AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0782090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0782090 MtrunA17_Chr5g0439121 81.652 1259 119 9 1 1183 667 1889 0.0 2004
Msa0782090 MtrunA17_Chr3g0108011 27.124 977 510 34 23 913 730 1590 2.59e-66 246
Msa0782090 MtrunA17_Chr3g0107931 27.364 994 536 37 23 916 725 1632 2.99e-64 240
Msa0782090 MtrunA17_Chr3g0091861 26.326 999 574 31 18 918 632 1566 8.36e-61 229
Msa0782090 MtrunA17_Chr3g0105551 27.890 839 396 33 23 805 690 1375 5.15e-53 204
Msa0782090 MtrunA17_Chr3g0108151 32.934 501 251 13 316 775 747 1203 2.59e-52 201
Msa0782090 MtrunA17_Chr3g0108151 24.956 569 305 17 5 493 646 1172 2.49e-28 124
Msa0782090 MtrunA17_Chr1g0160951 32.265 499 264 16 317 790 804 1253 2.65e-50 195
Msa0782090 MtrunA17_Chr1g0160951 23.441 401 244 12 116 493 841 1201 3.17e-16 84.7
Msa0782090 MtrunA17_Chr1g0160951 25.000 548 276 25 14 464 600 1109 2.19e-14 78.6
Msa0782090 MtrunA17_Chr3g0105481 27.436 780 382 24 91 773 563 1255 3.57e-50 194
Msa0782090 MtrunA17_Chr3g0105481 24.593 614 294 20 23 493 639 1226 3.80e-29 126
Msa0782090 MtrunA17_Chr5g0443761 30.380 553 311 17 316 827 635 1154 4.40e-46 181
Msa0782090 MtrunA17_Chr5g0443761 28.114 562 306 19 14 501 531 1068 2.14e-33 140
Msa0782090 MtrunA17_Chr3g0108821 29.795 537 296 18 349 861 1042 1521 3.81e-45 179
Msa0782090 MtrunA17_Chr3g0108821 27.729 458 251 15 316 766 796 1180 3.86e-21 100
Msa0782090 MtrunA17_Chr3g0108821 29.137 278 139 8 19 258 697 954 4.92e-18 90.5
Msa0782090 MtrunA17_Chr3g0108821 23.762 404 236 12 118 503 1044 1393 9.34e-17 86.3
Msa0782090 MtrunA17_Chr3g0108171 26.755 755 341 26 320 932 822 1506 2.35e-43 173
Msa0782090 MtrunA17_Chr3g0108171 23.889 540 285 15 23 463 723 1235 2.58e-28 124
Msa0782090 MtrunA17_Chr3g0108171 25.000 328 192 10 178 503 1053 1328 6.89e-14 77.0
Msa0782090 MtrunA17_Chr3g0108071 26.308 669 369 22 130 775 2 569 1.97e-42 169
Msa0782090 MtrunA17_Chr3g0108071 27.764 407 226 12 362 763 1 344 1.50e-16 85.5
Msa0782090 MtrunA17_Chr3g0108071 25.602 332 170 10 118 398 213 518 1.68e-12 72.4
Msa0782090 MtrunA17_Chr3g0108111 30.675 489 266 17 449 874 55 533 5.57e-42 164
Msa0782090 MtrunA17_Chr3g0108111 24.084 382 236 12 129 493 5 349 9.34e-15 79.0
Msa0782090 MtrunA17_Chr8g0360991 29.530 447 247 13 353 786 836 1227 1.02e-38 157
Msa0782090 MtrunA17_Chr8g0360991 25.046 539 308 14 8 497 695 1186 9.79e-25 112
Msa0782090 MtrunA17_Chr3g0099591 28.868 530 300 17 13 497 693 1190 1.85e-38 156
Msa0782090 MtrunA17_Chr3g0099591 29.208 404 233 8 355 748 832 1192 4.65e-36 149
Msa0782090 MtrunA17_Chr3g0100261 30.752 439 229 14 349 767 838 1221 7.97e-36 148
Msa0782090 MtrunA17_Chr3g0100261 26.306 536 311 15 9 497 701 1199 3.25e-29 126
Msa0782090 MtrunA17_Chr3g0108811 29.885 348 195 8 355 698 1069 1371 1.15e-34 145
Msa0782090 MtrunA17_Chr3g0108811 22.090 842 487 32 113 861 900 1665 1.23e-24 112
Msa0782090 MtrunA17_Chr3g0108811 28.043 460 255 16 316 766 809 1201 6.02e-23 106
Msa0782090 MtrunA17_Chr3g0108811 28.328 293 158 9 6 258 695 975 1.21e-18 92.8
Msa0782090 MtrunA17_Chr3g0105601 27.624 543 292 18 317 815 18 503 6.83e-33 134
Msa0782090 MtrunA17_Chr3g0105601 23.738 535 295 17 160 685 4 434 1.15e-19 94.0
Msa0782090 MtrunA17_Chr3g0105521 24.181 641 318 18 14 493 561 1194 9.98e-32 135
Msa0782090 MtrunA17_Chr3g0105521 38.693 199 116 4 575 770 1025 1220 3.15e-26 117
Msa0782090 MtrunA17_Chr3g0105521 25.800 469 278 15 320 774 668 1080 1.45e-20 99.0
Msa0782090 MtrunA17_Chr3g0107271 34.016 244 144 8 543 782 8 238 5.86e-30 119
Msa0782090 MtrunA17_Chr3g0099571 28.256 407 211 12 29 390 711 1081 1.18e-25 115
Msa0782090 MtrunA17_Chr3g0099571 24.789 355 199 9 290 630 774 1074 1.91e-17 88.6
Msa0782090 MtrunA17_Chr3g0105501 37.436 195 111 5 584 777 5 189 1.51e-25 105
Msa0782090 MtrunA17_Chr3g0097601 32.569 218 133 4 584 798 48 254 1.48e-23 101
Msa0782090 MtrunA17_Chr3g0100241 35.106 188 115 5 586 767 17 203 1.56e-21 94.4
Msa0782090 MtrunA17_Chr3g0100241 30.935 139 89 3 119 253 46 181 9.41e-11 63.2
Msa0782090 MtrunA17_Chr3g0107181 26.537 309 183 7 14 287 676 975 1.66e-21 101
Msa0782090 MtrunA17_Chr3g0107181 36.464 181 93 5 320 499 784 943 1.79e-18 91.7
Msa0782090 MtrunA17_Chr3g0107081 36.264 182 101 4 608 789 34 200 1.73e-21 94.4
Msa0782090 MtrunA17_Chr3g0106011 33.161 193 112 2 316 508 16 191 2.29e-21 95.5
Msa0782090 MtrunA17_Chr3g0106011 33.514 185 102 5 91 266 20 192 1.91e-15 78.2
Msa0782090 MtrunA17_Chr3g0096721 23.587 513 290 16 14 513 686 1109 3.09e-21 100
Msa0782090 MtrunA17_Chr3g0096721 27.446 419 229 14 313 710 729 1093 2.34e-17 88.2
Msa0782090 MtrunA17_Chr3g0096701 30.345 290 183 7 608 884 39 322 9.66e-21 98.6
Msa0782090 MtrunA17_Chr3g0097621 30.712 267 141 7 33 260 111 372 1.16e-20 96.7
Msa0782090 MtrunA17_Chr3g0097621 35.106 188 105 4 316 501 197 369 7.22e-18 88.2
Msa0782090 MtrunA17_Chr3g0096821 28.541 473 250 17 313 770 730 1129 1.42e-20 98.6
Msa0782090 MtrunA17_Chr3g0096821 27.778 252 137 7 14 255 687 903 2.18e-15 81.6
Msa0782090 MtrunA17_Chr3g0091851 25.901 444 254 15 10 396 621 1046 2.43e-19 94.7
Msa0782090 MtrunA17_Chr3g0091851 43.697 119 67 0 348 466 758 876 8.50e-15 79.7
Msa0782090 MtrunA17_Chr3g0107281 26.214 515 277 16 267 773 59 478 5.50e-19 92.0
Msa0782090 MtrunA17_Chr3g0107281 29.697 165 84 5 118 278 338 474 5.57e-13 73.2
Msa0782090 MtrunA17_Chr3g0107211 32.995 197 121 3 316 508 854 1043 1.42e-18 92.0
Msa0782090 MtrunA17_Chr3g0107211 27.586 290 167 7 116 367 891 1175 9.77e-18 89.4
Msa0782090 MtrunA17_Chr3g0107211 24.889 225 128 5 23 212 707 925 4.31e-11 67.8
Msa0782090 MtrunA17_Chr3g0097021 34.239 184 102 4 316 499 58 222 4.51e-18 86.7
Msa0782090 MtrunA17_Chr3g0106021 25.850 441 248 13 192 616 3 380 1.50e-17 86.3
Msa0782090 MtrunA17_Chr1g0174511 22.066 639 398 19 186 763 967 1566 1.68e-17 89.0
Msa0782090 MtrunA17_Chr7g0229721 31.250 256 155 9 14 263 687 927 2.42e-17 88.2
Msa0782090 MtrunA17_Chr1g0163991 22.154 650 411 17 118 716 626 1231 3.11e-17 87.8
Msa0782090 MtrunA17_Chr1g0163991 22.074 675 399 21 143 742 380 1002 4.70e-15 80.9
Msa0782090 MtrunA17_Chr3g0107071 28.571 245 138 6 14 255 7 217 4.95e-17 83.2
Msa0782090 MtrunA17_Chr3g0107071 35.450 189 99 5 313 499 50 217 1.53e-13 72.8
Msa0782090 MtrunA17_Chr3g0100231 37.888 161 82 6 349 498 541 694 1.82e-15 81.6
Msa0782090 MtrunA17_Chr3g0100231 26.641 259 143 6 9 224 404 658 8.36e-14 76.3
Msa0782090 MtrunA17_Chr3g0107981 30.734 218 125 7 43 255 1 197 2.27e-15 76.3
Msa0782090 MtrunA17_Chr2g0288311 37.879 132 76 4 621 752 31 156 4.82e-15 74.7
Msa0782090 MtrunA17_Chr1g0146241 20.584 685 431 21 115 752 898 1516 8.39e-15 80.1
Msa0782090 MtrunA17_Chr1g0172231 21.845 737 445 25 52 709 413 1097 9.05e-15 79.7
Msa0782090 MtrunA17_Chr1g0167981 21.446 802 513 26 27 765 736 1483 3.58e-14 78.2
Msa0782090 MtrunA17_Chr1g0167981 21.823 724 419 28 116 771 1366 2010 2.75e-11 68.6
Msa0782090 MtrunA17_Chr1g0172051 22.409 714 401 26 181 763 1394 2085 4.93e-14 77.8
Msa0782090 MtrunA17_Chr2g0323691 22.835 635 398 20 186 763 970 1569 9.76e-14 76.6
Msa0782090 MtrunA17_Chr8g0359891 21.651 642 397 20 186 763 846 1445 1.29e-13 76.3
Msa0782090 MtrunA17_Chr8g0359891 23.175 630 392 21 181 763 430 1014 8.19e-12 70.5
Msa0782090 MtrunA17_Chr3g0107631 35.862 145 85 3 362 506 1 137 1.51e-13 70.9
Msa0782090 MtrunA17_Chr3g0107631 33.333 135 76 3 130 255 2 131 6.22e-13 68.9
Msa0782090 MtrunA17_Chr1g0163891 22.118 642 394 22 186 763 983 1582 3.35e-13 74.7
Msa0782090 MtrunA17_Chr6g0474571 21.456 522 316 14 201 698 764 1215 5.31e-13 74.3
Msa0782090 MtrunA17_Chr6g0474571 22.833 600 373 21 186 771 969 1492 2.26e-11 68.9
Msa0782090 MtrunA17_Chr1g0163791 21.656 628 414 20 186 763 967 1566 1.89e-12 72.4
Msa0782090 MtrunA17_Chr3g0097641 38.788 165 92 4 346 508 786 943 2.50e-12 71.6
Msa0782090 MtrunA17_Chr1g0170881 21.473 638 403 20 186 763 968 1567 1.42e-11 69.3
Msa0782090 MtrunA17_Chr1g0163761 22.008 727 433 28 143 777 1343 2027 2.36e-11 68.9
Msa0782090 MtrunA17_Chr2g0313491 21.827 788 460 37 24 716 741 1467 3.76e-11 68.2
Msa0782090 MtrunA17_Chr7g0255111 24.547 497 273 23 317 770 948 1385 3.82e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 224 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTTGTTTCTCAGTTATT+TGG 0.160303 5_2:+64744293 Msa0782090:CDS
GTTGAAGTTATTGAGAATTT+TGG 0.185354 5_2:-64747326 None:intergenic
CCAAAACAGGAAGCTCAATT+TGG 0.188028 5_2:-64746321 None:intergenic
AAACACAAAGTGTGGTTATT+TGG 0.189214 5_2:-64749152 None:intergenic
GGACATATGGCGATCATATT+TGG 0.196248 5_2:-64746367 None:intergenic
CCAAATTGAGCTTCCTGTTT+TGG 0.204288 5_2:+64746321 Msa0782090:CDS
ACAGAGGGAAGCAGCTTTAA+AGG 0.223551 5_2:+64749518 Msa0782090:CDS
CCTGAGTTGAAATATATATT+TGG 0.225564 5_2:+64746268 Msa0782090:CDS
GAGAATTTGAAATACGTATT+TGG 0.226685 5_2:+64744897 Msa0782090:CDS
TTCCAAAGCAAACAGTTTCT+TGG 0.227880 5_2:+64749485 Msa0782090:CDS
ACTGTTTGCTTTGGAAATTT+TGG 0.237768 5_2:-64749478 None:intergenic
AATAATTTGATGGTTGATTC+TGG 0.267671 5_2:+64746457 Msa0782090:CDS
TTAAAGCAATTAGTAACTTA+TGG 0.270832 5_2:+64746061 Msa0782090:CDS
TGCTCAAAATCTGGCGCAAC+TGG 0.277872 5_2:+64744665 Msa0782090:CDS
TGCAAGAGGACTGGTAAAAT+TGG 0.285380 5_2:+64746222 Msa0782090:CDS
AATCAAATCGTTGAGGATAT+TGG 0.306245 5_2:+64745454 Msa0782090:CDS
TGCTAAAACCTTGACTTCAT+TGG 0.306886 5_2:+64746009 Msa0782090:CDS
ATCCAAGAAACTGTTTGCTT+TGG 0.314694 5_2:-64749487 None:intergenic
AGCTCAATTTGGAACTTGTT+TGG 0.319304 5_2:-64746310 None:intergenic
GGTCACAGAAAATTTGTCTA+TGG 0.326277 5_2:-64749418 None:intergenic
TATTTGAGGTCGATTATAAA+TGG 0.326623 5_2:+64749694 Msa0782090:CDS
AGGGTAAGATATTCCAGTTC+TGG 0.327387 5_2:-64747122 None:intergenic
TCCCTTGACATACATCATTC+AGG 0.329018 5_2:-64747259 None:intergenic
TCAGACACTGACCAATCTTT+TGG 0.333014 5_2:+64747292 Msa0782090:CDS
AATTGAGCATATGAAGCATT+TGG 0.337966 5_2:+64744536 Msa0782090:CDS
TCAAGTTTGGTAAAGGAATA+GGG 0.338346 5_2:-64747606 None:intergenic
AAATTTGTCTATGGTAATAA+AGG 0.340812 5_2:-64749409 None:intergenic
GGACAAATGCTATTGATATT+CGG 0.346837 5_2:-64744990 None:intergenic
TTGGACAATGACTTATATAT+AGG 0.353133 5_2:-64744614 None:intergenic
GTCAAGTTTGGTAAAGGAAT+AGG 0.353400 5_2:-64747607 None:intergenic
AGCTCAAGGCCTTGTACAAC+TGG 0.354325 5_2:+64744851 Msa0782090:CDS
GCATCCTCAAAGACTCTTCC+AGG 0.361705 5_2:-64749218 None:intergenic
AGCATTACATGTTTCAGTTT+CGG 0.362165 5_2:-64747221 None:intergenic
CACATTAGATAACAATCTTC+TGG 0.365720 5_2:-64745011 None:intergenic
GGTAGAACAGTGTGAGGAAT+TGG 0.367063 5_2:+64746959 Msa0782090:CDS
TTTGTGTAGGAGTTGGTTAA+AGG 0.368467 5_2:+64747992 Msa0782090:intron
TAATGCCGCGATCAAGGATT+TGG 0.368482 5_2:+64744323 Msa0782090:CDS
TGTGAAGCTTCATTGATTAT+CGG 0.370501 5_2:-64745119 None:intergenic
TTGGTCTTCCCAGTCTTATA+AGG 0.372003 5_2:+64745936 Msa0782090:CDS
CCTTGTACAACTGGAGTGTT+TGG 0.372146 5_2:+64744860 Msa0782090:CDS
ATCCCATGTGTTTCCAGAAC+TGG 0.375180 5_2:+64747109 Msa0782090:CDS
TTCTGAGGGGATAGAATGTT+TGG 0.376627 5_2:+64744455 Msa0782090:CDS
AAAGGAACAGATCATTCAAT+TGG 0.379504 5_2:+64749536 Msa0782090:CDS
ACTTGCAGTTGCTCAAAATC+TGG 0.381898 5_2:+64744656 Msa0782090:CDS
GAGAAGATAGACTTTAGTTT+CGG 0.384241 5_2:-64746894 None:intergenic
TGAAAGAGCATAAGATGCTT+TGG 0.384295 5_2:-64749380 None:intergenic
CTGACCTGGAAGAGTCTTTG+AGG 0.384601 5_2:+64749214 Msa0782090:CDS
TTGAAGGCTTACACTATGTT+TGG 0.386061 5_2:-64746841 None:intergenic
GAAGAGATCAGAAAACTAGA+AGG 0.386150 5_2:+64746083 Msa0782090:CDS
ATCCATATGTACATTAGCTT+TGG 0.388881 5_2:-64746813 None:intergenic
ACTAATATCATGTCCGATGC+TGG 0.392088 5_2:+64745964 Msa0782090:CDS
ATTAGTATATGCTGAAGTTC+AGG 0.397345 5_2:-64744711 None:intergenic
TTGGCAAATTGACACACTTA+AGG 0.399656 5_2:-64746794 None:intergenic
TAACAAGAGTAAGCTCTTCC+AGG 0.406999 5_2:-64744962 None:intergenic
TATCGTACCTCTGTCAAGTT+TGG 0.408698 5_2:-64747619 None:intergenic
GAGAAACTCGTCCTGGAAAC+CGG 0.413836 5_2:-64744259 None:intergenic
TATTGTTGTAAGTATCAGTT+TGG 0.414344 5_2:-64749047 None:intergenic
AGAAGTTAAGAGCCGTTAGA+AGG 0.415578 5_2:-64749281 None:intergenic
TTTATACTTTGAAATATGTC+AGG 0.417098 5_2:-64744405 None:intergenic
GTGAAGAGACATGTTAGCTT+TGG 0.418399 5_2:-64744633 None:intergenic
ATGTCTGTTATTATTGAAAA+CGG 0.420882 5_2:+64746693 Msa0782090:CDS
CTATGTTGAGAGATAGCTAA+TGG 0.421122 5_2:-64748768 None:intergenic
ATTGAGCATATGAAGCATTT+GGG 0.421651 5_2:+64744537 Msa0782090:CDS
AGGCCTTGAGCTAAAGTGAT+TGG 0.422035 5_2:-64744840 None:intergenic
ACAATTGTGCACCAAAAGAT+TGG 0.425990 5_2:-64747303 None:intergenic
TATAAATACAAGAGAAAACT+TGG 0.427928 5_2:+64749089 Msa0782090:CDS
TCTATCAATGAATAATTTGA+TGG 0.428913 5_2:+64746447 Msa0782090:CDS
TCTTCTTCTGCAAGTTGCAT+TGG 0.430866 5_2:+64744508 Msa0782090:CDS
GTCAATAACTGTGAGTTAGA+AGG 0.430891 5_2:+64745173 Msa0782090:CDS
GATCATTGAGCTTTCTGCCC+TGG 0.434908 5_2:+64744944 Msa0782090:CDS
TGAAGGCATCTTTCAAATGA+AGG 0.439651 5_2:+64746725 Msa0782090:CDS
GGAACTTGTTTGGATATTGA+TGG 0.439754 5_2:-64746300 None:intergenic
TTCCATAGGATTGAGATCAT+TGG 0.442197 5_2:-64749115 None:intergenic
TTTGCAAATTGAATTGAAGC+AGG 0.444835 5_2:-64745040 None:intergenic
ACTTCTTGTCCATTCTCACT+TGG 0.445242 5_2:-64746753 None:intergenic
GGCCTTGAGCTAAAGTGATT+GGG 0.450874 5_2:-64744839 None:intergenic
TAGTGTTAACCTTATAAGAC+TGG 0.453487 5_2:-64745945 None:intergenic
TGCCAAAGCTAATGTACATA+TGG 0.453580 5_2:+64746811 Msa0782090:CDS
TGACATACATCATTCAGGTT+TGG 0.454788 5_2:-64747254 None:intergenic
CAATTCAATTTGCAAAATTG+TGG 0.456051 5_2:+64745047 Msa0782090:CDS
GATACAAGATTTAGAATCAC+AGG 0.459572 5_2:+64747570 Msa0782090:CDS
ATCTTTAGCGCTTTCAATTG+AGG 0.459966 5_2:-64745412 None:intergenic
CTAGTTCAAGTGTTTAAAGT+TGG 0.464453 5_2:+64747161 Msa0782090:CDS
CCTTCATCATACTCTTCCAT+AGG 0.468941 5_2:-64749129 None:intergenic
ATAGAGGGCCTAAGCATTCA+AGG 0.470650 5_2:+64748542 Msa0782090:CDS
TACAATGGTCAAATGCCTCT+TGG 0.471459 5_2:+64744567 Msa0782090:CDS
CATGCTACAAAGCTTTGATC+GGG 0.473282 5_2:+64747364 Msa0782090:CDS
CTTACCATTACATATTCAAA+AGG 0.475866 5_2:-64748605 None:intergenic
TGTTAGAGAGTGTGGTGTGC+TGG 0.480269 5_2:+64744806 Msa0782090:CDS
TGGGCTTGATTGTGAGCAAT+CGG 0.481155 5_2:-64748748 None:intergenic
CTTCTTGTCCATTCTCACTT+GGG 0.481507 5_2:-64746752 None:intergenic
TATATCTAATGCCGCGATCA+AGG 0.482151 5_2:+64744317 Msa0782090:CDS
AAATGCATTGAAGAAACTAT+AGG 0.482552 5_2:+64749594 Msa0782090:CDS
CCAAACACTCCAGTTGTACA+AGG 0.482754 5_2:-64744860 None:intergenic
CAGTCCTCTTGCAAATGAAA+CGG 0.483083 5_2:-64746212 None:intergenic
TGCAGATAACTTAGTCGAAA+AGG 0.483271 5_2:+64749185 Msa0782090:CDS
TAGAAGGGGAGAAATAGTTC+AGG 0.486235 5_2:+64746099 Msa0782090:CDS
GATCAAGGATTTGGCCGAAA+AGG 0.487795 5_2:+64744332 Msa0782090:CDS
ACCTCTGTCAAGTTTGGTAA+AGG 0.487864 5_2:-64747613 None:intergenic
GGCCAATGATCTCAATCCTA+TGG 0.489154 5_2:+64749113 Msa0782090:CDS
CGAAAAGGCCCTTTCTGACC+TGG 0.489288 5_2:+64749200 Msa0782090:CDS
AAGGGAGTCCCAAGTGAGAA+TGG 0.489677 5_2:+64746744 Msa0782090:CDS
GGCCTCGTTGTGATGAGCTT+CGG 0.490127 5_2:-64749439 None:intergenic
CAAGTGTTTAAAGTTGGTCC+TGG 0.491588 5_2:+64747167 Msa0782090:CDS
ATTTACTGAATTCATCTAGC+AGG 0.492565 5_2:-64749765 None:intergenic
AGTCCTCTTGCAAATGAAAC+GGG 0.493402 5_2:-64746211 None:intergenic
ATAAGTTGTACAACAACAAA+CGG 0.502098 5_2:+64747511 Msa0782090:CDS
TTGGATATTGATGGGAAGAA+TGG 0.503363 5_2:-64746291 None:intergenic
CGGATTGTTGTGTAAAGCCA+TGG 0.503533 5_2:-64745099 None:intergenic
AAGACTCTTCCAGGTCAGAA+AGG 0.505049 5_2:-64749209 None:intergenic
CGTTTCATTTGCAAGAGGAC+TGG 0.505232 5_2:+64746213 Msa0782090:CDS
AAGTTTCATGTTAGAGAGTG+TGG 0.505294 5_2:+64744798 Msa0782090:CDS
TACACTTTATAAGATAAGAT+AGG 0.508869 5_2:+64749818 Msa0782090:three_prime_UTR
GTTGGTTAAAGGACAATCAA+TGG 0.515267 5_2:+64748003 Msa0782090:CDS
ACAGTGTCTCAAAGAAATAG+AGG 0.515813 5_2:+64748526 Msa0782090:intron
GCAGAGGTCTTGTGTATAGC+AGG 0.518876 5_2:+64744354 Msa0782090:CDS
TATGTTGAGAGATAGCTAAT+GGG 0.520460 5_2:-64748767 None:intergenic
AGACTCTTCCAGGTCAGAAA+GGG 0.530342 5_2:-64749208 None:intergenic
CTTCTTGTCATGAACGATGT+TGG 0.530497 5_2:+64746424 Msa0782090:CDS
AAAGTGTATTTATTACATGT+AGG 0.530950 5_2:-64749803 None:intergenic
TTGTGTATAGCAGGTATTGA+GGG 0.534614 5_2:+64744363 Msa0782090:CDS
ATGGACAAGAAGTGATATCC+TGG 0.536585 5_2:+64746763 Msa0782090:CDS
TTACTAATTGCTTTAAACCA+TGG 0.537762 5_2:-64746054 None:intergenic
CAGAAGATTGTTATCTAATG+TGG 0.538683 5_2:+64745012 Msa0782090:CDS
CAATTCTTCCAATGAAGTCA+AGG 0.539953 5_2:-64746017 None:intergenic
ATAAATACAAGAGAAAACTT+GGG 0.544896 5_2:+64749090 Msa0782090:CDS
TAGACTAGAGTCTTGATTGA+GGG 0.544985 5_2:-64747141 None:intergenic
AACATATCTTCAAGAGGAGA+AGG 0.547440 5_2:+64749569 Msa0782090:CDS
ATGAGCCAACAAAAGCCACT+TGG 0.548390 5_2:+64748040 Msa0782090:CDS
GATGATTGAGAAACTCGTCC+TGG 0.551510 5_2:-64744266 None:intergenic
AGAAGCAAACTTGAGGACTC+TGG 0.551808 5_2:-64747022 None:intergenic
GGTGTCTATCAATACTTCCA+TGG 0.552802 5_2:+64745082 Msa0782090:CDS
TATAGGCTACAAAACGGAGT+TGG 0.554635 5_2:+64749611 Msa0782090:CDS
ACATGCTACAAAGCTTTGAT+CGG 0.555163 5_2:+64747363 Msa0782090:CDS
CTAGGATCTTCAACAGAGGC+AGG 0.555271 5_2:-64746935 None:intergenic
ATTGGCACTGCAATTCCCTC+AGG 0.555694 5_2:+64745472 Msa0782090:CDS
GTCTTTGAGGATGCCTCTGA+AGG 0.556623 5_2:+64749227 Msa0782090:CDS
AGCTCGGCAACAAATATTTG+AGG 0.556668 5_2:+64749680 Msa0782090:CDS
TTGGTCCTGGTGTGAGAGAT+GGG 0.556938 5_2:+64747180 Msa0782090:CDS
AGAAATAACATATCTTCAAG+AGG 0.557377 5_2:+64749563 Msa0782090:CDS
TTGGTTAAAGGACAATCAAT+GGG 0.559031 5_2:+64748004 Msa0782090:CDS
ACATCGTTCATGACAAGAAG+TGG 0.559036 5_2:-64746421 None:intergenic
TTGCAAATTGAATTGAAGCA+GGG 0.559445 5_2:-64745039 None:intergenic
GAAGGCATCTTTCAAATGAA+GGG 0.560600 5_2:+64746726 Msa0782090:CDS
CCAAATATATATTTCAACTC+AGG 0.561483 5_2:-64746268 None:intergenic
CTAATATCATGTCCGATGCT+GGG 0.561510 5_2:+64745965 Msa0782090:CDS
GAAAACGGATCTGAAATTGA+AGG 0.564218 5_2:+64746708 Msa0782090:CDS
TTATACTTTGAAATATGTCA+GGG 0.566335 5_2:-64744404 None:intergenic
AATGGTCAAATGCCTCTTGG+TGG 0.566581 5_2:+64744570 Msa0782090:CDS
CTAGACTAGAGTCTTGATTG+AGG 0.567258 5_2:-64747142 None:intergenic
AACAAGAGTAAGCTCTTCCA+GGG 0.567593 5_2:-64744961 None:intergenic
AAAGCTAATGTACATATGGA+TGG 0.567886 5_2:+64746815 Msa0782090:CDS
TGGAAGATCAAATGAAAGCT+CGG 0.568431 5_2:+64749664 Msa0782090:CDS
CCTCACACTGTTCTACCACT+AGG 0.569504 5_2:-64746953 None:intergenic
AAAGATGTAGCTCTATCAGA+TGG 0.570186 5_2:+64749321 Msa0782090:CDS
ACACTTAAGGTCTTCTAACC+AGG 0.570784 5_2:-64746781 None:intergenic
ATCCCAATCACTTTAGCTCA+AGG 0.571511 5_2:+64744837 Msa0782090:CDS
AAGAGATCAGAAAACTAGAA+GGG 0.571970 5_2:+64746084 Msa0782090:CDS
GTTGGTCCTGGTGTGAGAGA+TGG 0.572229 5_2:+64747179 Msa0782090:CDS
CTTGTGTATAGCAGGTATTG+AGG 0.573493 5_2:+64744362 Msa0782090:CDS
CCTATGGAAGAGTATGATGA+AGG 0.576533 5_2:+64749129 Msa0782090:CDS
CAGGACTCTCAAGACAGAGA+TGG 0.577774 5_2:-64746916 None:intergenic
TCTTGTGCAGAGAGTTGAGA+AGG 0.579325 5_2:+64748662 Msa0782090:intron
GAACTTGTTTGGATATTGAT+GGG 0.579702 5_2:-64746299 None:intergenic
GGATTTGGCCGAAAAGGCAG+AGG 0.584723 5_2:+64744338 Msa0782090:CDS
CTACCCGTTTCATTTGCAAG+AGG 0.585330 5_2:+64746208 Msa0782090:CDS
CATTTGGGAGCTTTATACAA+TGG 0.585469 5_2:+64744552 Msa0782090:CDS
AAATTGAATTGAAGCAGGGA+TGG 0.585976 5_2:-64745035 None:intergenic
ACCTGAATGATGTATGTCAA+GGG 0.587195 5_2:+64747258 Msa0782090:CDS
TAAGAGCCGTTAGAAGGCGA+AGG 0.589692 5_2:-64749275 None:intergenic
AGTTGAGAAGGCTACTGAAG+AGG 0.589930 5_2:+64748674 Msa0782090:CDS
AGAAACTATAGGCTACAAAA+CGG 0.591909 5_2:+64749605 Msa0782090:CDS
ATGAAACGGGTAGTATACAC+TGG 0.593405 5_2:-64746198 None:intergenic
TAAATACAAGAGAAAACTTG+GGG 0.593544 5_2:+64749091 Msa0782090:CDS
CAAGTTTGGTAAAGGAATAG+GGG 0.594297 5_2:-64747605 None:intergenic
AACTTCAACAACTACTGTTG+AGG 0.594959 5_2:+64747340 Msa0782090:CDS
CTTGGATGATGCTCAACAGA+GGG 0.597612 5_2:+64749503 Msa0782090:CDS
AAGCTAATGTACATATGGAT+GGG 0.601355 5_2:+64746816 Msa0782090:CDS
TTATGTCGTGTAAGTGTGGA+CGG 0.601754 5_2:-64747492 None:intergenic
AGTGTTAACCTTATAAGACT+GGG 0.605559 5_2:-64745944 None:intergenic
AACCTGAATGATGTATGTCA+AGG 0.607213 5_2:+64747257 Msa0782090:CDS
GCATAGTGTCTATTATAGCT+CGG 0.611068 5_2:-64749347 None:intergenic
GGTTGACACTTGTCTGATCG+AGG 0.612913 5_2:+64744476 Msa0782090:CDS
AACTGTGAGAAGCAAACTTG+AGG 0.613619 5_2:-64747029 None:intergenic
CTTCTGATACGTGATTCTGA+GGG 0.613722 5_2:+64744441 Msa0782090:CDS
CTGGAAACACATGGGATGTG+CGG 0.615815 5_2:-64747103 None:intergenic
GCTTCTGATACGTGATTCTG+AGG 0.618264 5_2:+64744440 Msa0782090:CDS
TGGTGTGAGAGATGGGAGAG+TGG 0.618911 5_2:+64747187 Msa0782090:CDS
TTGACAATACAAGATTGCCA+TGG 0.622401 5_2:+64746037 Msa0782090:CDS
CAGGATTTCTTGCAACAATG+TGG 0.623390 5_2:-64749746 None:intergenic
TCCTTTACCAAACTTGACAG+AGG 0.623727 5_2:+64747612 Msa0782090:CDS
TAGAGGGCCTAAGCATTCAA+GGG 0.623984 5_2:+64748543 Msa0782090:CDS
ACTCTCCCATCTCTCACACC+AGG 0.624756 5_2:-64747185 None:intergenic
GTACTTACAGATTCTCCAAG+TGG 0.627401 5_2:-64748055 None:intergenic
CACTTCAGAAACACAAAGTG+TGG 0.629775 5_2:-64749160 None:intergenic
ATTCCAGTTCTGGAAACACA+TGG 0.630750 5_2:-64747112 None:intergenic
TTCGGCCAAATCCTTGATCG+CGG 0.631077 5_2:-64744328 None:intergenic
AAACGGAGTTGGAGAATGTG+AGG 0.631772 5_2:+64749622 Msa0782090:CDS
CAACTTATGTCGTGTAAGTG+TGG 0.633609 5_2:-64747496 None:intergenic
AGAGATCAGAAAACTAGAAG+GGG 0.634835 5_2:+64746085 Msa0782090:CDS
TTTGGAAGAAAGAGTAATGG+CGG 0.638745 5_2:-64749460 None:intergenic
TAACAGCCTTCGCCTTCTAA+CGG 0.640328 5_2:+64749269 Msa0782090:CDS
ATGAACAATGAACCCAGCAT+CGG 0.640559 5_2:-64745977 None:intergenic
AGAGGGCCTAAGCATTCAAG+GGG 0.645817 5_2:+64748544 Msa0782090:CDS
GCAAAGACGAGCATGTTGCA+TGG 0.646809 5_2:-64746399 None:intergenic
CAGTGTCTCAAAGAAATAGA+GGG 0.647088 5_2:+64748527 Msa0782090:intron
ACCACTAGGATCTTCAACAG+AGG 0.648649 5_2:-64746939 None:intergenic
CCTAGTGGTAGAACAGTGTG+AGG 0.655007 5_2:+64746953 Msa0782090:CDS
GCCTCTGTTGAAGATCCTAG+TGG 0.655823 5_2:+64746938 Msa0782090:CDS
TCTTGGATGATGCTCAACAG+AGG 0.659133 5_2:+64749502 Msa0782090:CDS
GACACTTGTCTGATCGAGGT+AGG 0.661498 5_2:+64744480 Msa0782090:CDS
TCAGCTCAATCAAATCGTTG+AGG 0.662541 5_2:+64745447 Msa0782090:CDS
GAGCTAGCTATGTCCTTCAG+AGG 0.665087 5_2:-64749240 None:intergenic
TTCTCAAAATGACCACCAAG+AGG 0.666178 5_2:-64744582 None:intergenic
TTCCAGTTCTGGAAACACAT+GGG 0.669141 5_2:-64747111 None:intergenic
TTCTGATACGTGATTCTGAG+GGG 0.679667 5_2:+64744442 Msa0782090:CDS
TGTATAGCAGGTATTGAGGG+AGG 0.682161 5_2:+64744366 Msa0782090:CDS
AGTATGCTATTACAGGACGA+AGG 0.704451 5_2:+64746639 Msa0782090:intron
TATATCTGCATTCTTGAACG+CGG 0.708004 5_2:-64748700 None:intergenic
ATGCTACAAAGCTTTGATCG+GGG 0.723716 5_2:+64747365 Msa0782090:CDS
AAATACAAGAGAAAACTTGG+GGG 0.739234 5_2:+64749092 Msa0782090:CDS
GAAGGACATAGCTAGCTCAG+AGG 0.748939 5_2:+64749245 Msa0782090:CDS
GACCGAAGCTCATCACAACG+AGG 0.775182 5_2:+64749437 Msa0782090:CDS
GAGGGCCTAAGCATTCAAGG+GGG 0.812207 5_2:+64748545 Msa0782090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATGAAACTTTTTTAATTT+TGG - chr5_2:64744789-64744808 None:intergenic 15.0%
!!! AACAGTAATTTAATTTTACT+TGG - chr5_2:64748355-64748374 None:intergenic 15.0%
!! AGAATAAGATTATTAATGTA+GGG - chr5_2:64748429-64748448 None:intergenic 15.0%
!! AAGAATAAGATTATTAATGT+AGG - chr5_2:64748430-64748449 None:intergenic 15.0%
!! TACAACAATAAAAAAAACAA+AGG + chr5_2:64749060-64749079 Msa0782090:CDS 15.0%
!!! AATTTTTTTATATCAATGCA+TGG + chr5_2:64749912-64749931 Msa0782090:three_prime_UTR 15.0%
!!! TTATACTTTGAAATATGTCA+GGG - chr5_2:64744407-64744426 None:intergenic 20.0%
!!! TTTATACTTTGAAATATGTC+AGG - chr5_2:64744408-64744427 None:intergenic 20.0%
!!! GCTAAATGTTATGAAAATTT+TGG + chr5_2:64745568-64745587 Msa0782090:intron 20.0%
!! TAGATCATTTCTAATATACA+AGG + chr5_2:64745874-64745893 Msa0782090:intron 20.0%
!! TTAAAGCAATTAGTAACTTA+TGG + chr5_2:64746061-64746080 Msa0782090:CDS 20.0%
!! TCTATCAATGAATAATTTGA+TGG + chr5_2:64746447-64746466 Msa0782090:CDS 20.0%
!! ATGTCTGTTATTATTGAAAA+CGG + chr5_2:64746693-64746712 Msa0782090:CDS 20.0%
!!! TTTTCTCAAAGATTATAACT+TGG + chr5_2:64747429-64747448 Msa0782090:intron 20.0%
!!! ACAATATGTTATTTTAGACA+AGG + chr5_2:64747453-64747472 Msa0782090:intron 20.0%
!! AAAAAAAGAGAGAAACAAAA+TGG - chr5_2:64748195-64748214 None:intergenic 20.0%
!!! TTTTGTTTCTCTCTTTTTTT+TGG + chr5_2:64748195-64748214 Msa0782090:intron 20.0%
!! CTTATCTATATATCAACTAT+CGG - chr5_2:64748309-64748328 None:intergenic 20.0%
!! TTATAAAAGAAACTTACATG+TGG - chr5_2:64748801-64748820 None:intergenic 20.0%
!!! ATAAATCAGTACTATTTTGT+TGG - chr5_2:64748835-64748854 None:intergenic 20.0%
!!! AAGTTTTCTCTTGTATTTAT+AGG - chr5_2:64749090-64749109 None:intergenic 20.0%
!! TATAAATACAAGAGAAAACT+TGG + chr5_2:64749089-64749108 Msa0782090:CDS 20.0%
!! ATAAATACAAGAGAAAACTT+GGG + chr5_2:64749090-64749109 Msa0782090:CDS 20.0%
!! AAATTTGTCTATGGTAATAA+AGG - chr5_2:64749412-64749431 None:intergenic 20.0%
!! AAAGTGTATTTATTACATGT+AGG - chr5_2:64749806-64749825 None:intergenic 20.0%
!! TACACTTTATAAGATAAGAT+AGG + chr5_2:64749818-64749837 Msa0782090:three_prime_UTR 20.0%
!! AACTTTGTTTCTCAGTTATT+TGG + chr5_2:64744293-64744312 Msa0782090:CDS 25.0%
! TTGGACAATGACTTATATAT+AGG - chr5_2:64744617-64744636 None:intergenic 25.0%
!! GAGAATTTGAAATACGTATT+TGG + chr5_2:64744897-64744916 Msa0782090:CDS 25.0%
! CAATTCAATTTGCAAAATTG+TGG + chr5_2:64745047-64745066 Msa0782090:CDS 25.0%
! ATGTTTGGAAATGTTGTATT+TGG + chr5_2:64745250-64745269 Msa0782090:intron 25.0%
!! ATTTGTTGAAGATTTGGAAT+TGG - chr5_2:64745331-64745350 None:intergenic 25.0%
! AATTCCAAATCTTCAACAAA+TGG + chr5_2:64745330-64745349 Msa0782090:intron 25.0%
! CTGTAACTCTTATGTTAAAT+TGG + chr5_2:64745519-64745538 Msa0782090:intron 25.0%
! TTCTGTCTGTATATAATTCA+TGG + chr5_2:64745671-64745690 Msa0782090:intron 25.0%
!! TAATTCATGGTGATTTTCTA+TGG + chr5_2:64745684-64745703 Msa0782090:intron 25.0%
! TTGAATAAAATGTGCTTTGA+AGG + chr5_2:64745731-64745750 Msa0782090:intron 25.0%
!!! ATTTTGTTTTTCTTACCAAC+GGG - chr5_2:64745801-64745820 None:intergenic 25.0%
!!! GATTTTGTTTTTCTTACCAA+CGG - chr5_2:64745802-64745821 None:intergenic 25.0%
! ATTGTTAAATCTACCATGTA+TGG - chr5_2:64745849-64745868 None:intergenic 25.0%
!! TTACTAATTGCTTTAAACCA+TGG - chr5_2:64746057-64746076 None:intergenic 25.0%
! CCAAATATATATTTCAACTC+AGG - chr5_2:64746271-64746290 None:intergenic 25.0%
!! CCTGAGTTGAAATATATATT+TGG + chr5_2:64746268-64746287 Msa0782090:CDS 25.0%
!! AATAATTTGATGGTTGATTC+TGG + chr5_2:64746457-64746476 Msa0782090:CDS 25.0%
!!! TTTTAAGAAAGACAATGAGA+GGG - chr5_2:64746533-64746552 None:intergenic 25.0%
! AACAATTTCTATAGACATGT+GGG - chr5_2:64746594-64746613 None:intergenic 25.0%
! TAACAATTTCTATAGACATG+TGG - chr5_2:64746595-64746614 None:intergenic 25.0%
! TACTTAACATTAAGTCTGAT+AGG - chr5_2:64746623-64746642 None:intergenic 25.0%
! AATGTTAAGTATGCTATTAC+AGG + chr5_2:64746632-64746651 Msa0782090:intron 25.0%
!!! TTATTTTGTGAAGATGTTGA+AGG - chr5_2:64746860-64746879 None:intergenic 25.0%
!! GTTGAAGTTATTGAGAATTT+TGG - chr5_2:64747329-64747348 None:intergenic 25.0%
! ATAAGTTGTACAACAACAAA+CGG + chr5_2:64747511-64747530 Msa0782090:CDS 25.0%
!! TATATCTGGTTTCTTAAAAG+AGG - chr5_2:64747655-64747674 None:intergenic 25.0%
! AAGAAACCAGATATATTAGA+TGG + chr5_2:64747660-64747679 Msa0782090:intron 25.0%
! CAAATTCATAACTGATTGAA+AGG + chr5_2:64747749-64747768 Msa0782090:intron 25.0%
! ATATCAAAATGACTAGGAAT+TGG - chr5_2:64747775-64747794 None:intergenic 25.0%
! TGGTAAATATCAAAATGACT+AGG - chr5_2:64747781-64747800 None:intergenic 25.0%
! TGTATGGTGTAAAATAATCA+TGG - chr5_2:64747801-64747820 None:intergenic 25.0%
!!! AAGAAAAAGTTTTAGGTGTA+TGG - chr5_2:64747817-64747836 None:intergenic 25.0%
!! AAGGGAAAAGAAAAAGTTTT+AGG - chr5_2:64747824-64747843 None:intergenic 25.0%
! ATTTGTTCATTACTTTGTGT+AGG + chr5_2:64747979-64747998 Msa0782090:intron 25.0%
!!! ACAAAATGGTGATTTTTTTC+CGG - chr5_2:64748181-64748200 None:intergenic 25.0%
!! TTTTGGTAGAACAATCTTTA+AGG + chr5_2:64748212-64748231 Msa0782090:intron 25.0%
!! ATAATCTTTTATCACCAGAA+AGG + chr5_2:64748242-64748261 Msa0782090:intron 25.0%
! GCTTAAAGATTATCTTTAGT+AGG - chr5_2:64748287-64748306 None:intergenic 25.0%
! AAGATGTACTGTAATTCTAT+TGG - chr5_2:64748459-64748478 None:intergenic 25.0%
! CTTACCATTACATATTCAAA+AGG - chr5_2:64748608-64748627 None:intergenic 25.0%
!!! AACAGTTTTTTGGATTAAAG+TGG - chr5_2:64748968-64748987 None:intergenic 25.0%
! TTTAATCCAAAAAACTGTTG+TGG + chr5_2:64748969-64748988 Msa0782090:intron 25.0%
!!! AAAAACAAAAAAGGCATTAC+CGG - chr5_2:64748999-64749018 None:intergenic 25.0%
! TATTGTTGTAAGTATCAGTT+TGG - chr5_2:64749050-64749069 None:intergenic 25.0%
! TAAATACAAGAGAAAACTTG+GGG + chr5_2:64749091-64749110 Msa0782090:CDS 25.0%
!!! TACATCTTTTAAAGAAAGGT+GGG - chr5_2:64749310-64749329 None:intergenic 25.0%
!!! AATTTTGGAAGAAAGAGTAA+TGG - chr5_2:64749466-64749485 None:intergenic 25.0%
! AGAAATAACATATCTTCAAG+AGG + chr5_2:64749563-64749582 Msa0782090:CDS 25.0%
! AAATGCATTGAAGAAACTAT+AGG + chr5_2:64749594-64749613 Msa0782090:CDS 25.0%
! GAAAGACAAAAATCAAATTG+TGG + chr5_2:64749644-64749663 Msa0782090:CDS 25.0%
!! TATTTGAGGTCGATTATAAA+TGG + chr5_2:64749694-64749713 Msa0782090:CDS 25.0%
! AATTGAGCATATGAAGCATT+TGG + chr5_2:64744536-64744555 Msa0782090:CDS 30.0%
! ATTGAGCATATGAAGCATTT+GGG + chr5_2:64744537-64744556 Msa0782090:CDS 30.0%
ATTAGTATATGCTGAAGTTC+AGG - chr5_2:64744714-64744733 None:intergenic 30.0%
GGACAAATGCTATTGATATT+CGG - chr5_2:64744993-64745012 None:intergenic 30.0%
CACATTAGATAACAATCTTC+TGG - chr5_2:64745014-64745033 None:intergenic 30.0%
CAGAAGATTGTTATCTAATG+TGG + chr5_2:64745012-64745031 Msa0782090:CDS 30.0%
TTGCAAATTGAATTGAAGCA+GGG - chr5_2:64745042-64745061 None:intergenic 30.0%
TTTGCAAATTGAATTGAAGC+AGG - chr5_2:64745043-64745062 None:intergenic 30.0%
! AAATTGTGGAGAGTTTTTCA+TGG + chr5_2:64745061-64745080 Msa0782090:CDS 30.0%
! TGTGAAGCTTCATTGATTAT+CGG - chr5_2:64745122-64745141 None:intergenic 30.0%
! ATCTCCATTTGTTGAAGATT+TGG - chr5_2:64745337-64745356 None:intergenic 30.0%
AATCAAATCGTTGAGGATAT+TGG + chr5_2:64745454-64745473 Msa0782090:CDS 30.0%
!! AAAATGTGCTTTGAAGGATA+AGG + chr5_2:64745737-64745756 Msa0782090:intron 30.0%
!! AAATGTGCTTTGAAGGATAA+GGG + chr5_2:64745738-64745757 Msa0782090:intron 30.0%
AGTGTTAACCTTATAAGACT+GGG - chr5_2:64745947-64745966 None:intergenic 30.0%
TAGTGTTAACCTTATAAGAC+TGG - chr5_2:64745948-64745967 None:intergenic 30.0%
AAGAGATCAGAAAACTAGAA+GGG + chr5_2:64746084-64746103 Msa0782090:CDS 30.0%
! GAACTTGTTTGGATATTGAT+GGG - chr5_2:64746302-64746321 None:intergenic 30.0%
! AGTGCAAATTTTTCCAAAAC+AGG - chr5_2:64746337-64746356 None:intergenic 30.0%
!!! GTTTTAAGAAAGACAATGAG+AGG - chr5_2:64746534-64746553 None:intergenic 30.0%
! ATCCATATGTACATTAGCTT+TGG - chr5_2:64746816-64746835 None:intergenic 30.0%
AAAGCTAATGTACATATGGA+TGG + chr5_2:64746815-64746834 Msa0782090:CDS 30.0%
AAGCTAATGTACATATGGAT+GGG + chr5_2:64746816-64746835 Msa0782090:CDS 30.0%
! GAGAAGATAGACTTTAGTTT+CGG - chr5_2:64746897-64746916 None:intergenic 30.0%
! CTAGTTCAAGTGTTTAAAGT+TGG + chr5_2:64747161-64747180 Msa0782090:CDS 30.0%
AGCATTACATGTTTCAGTTT+CGG - chr5_2:64747224-64747243 None:intergenic 30.0%
AAAGCACAAAATGAAACAGA+GGG - chr5_2:64747407-64747426 None:intergenic 30.0%
! AAAAGCACAAAATGAAACAG+AGG - chr5_2:64747408-64747427 None:intergenic 30.0%
!! TGTTTTTGTTCTTCGATGTA+AGG - chr5_2:64747546-64747565 None:intergenic 30.0%
! GATACAAGATTTAGAATCAC+AGG + chr5_2:64747570-64747589 Msa0782090:CDS 30.0%
TCAAGTTTGGTAAAGGAATA+GGG - chr5_2:64747609-64747628 None:intergenic 30.0%
TCTTCTCCATCTAATATATC+TGG - chr5_2:64747669-64747688 None:intergenic 30.0%
TATATTAGATGGAGAAGAGT+TGG + chr5_2:64747671-64747690 Msa0782090:intron 30.0%
ATTTCATTCTGCGGTAAAAA+GGG - chr5_2:64747842-64747861 None:intergenic 30.0%
!!! GTGACTGAAACATTTTTTCT+TGG + chr5_2:64747887-64747906 Msa0782090:intron 30.0%
TTGGTTAAAGGACAATCAAT+GGG + chr5_2:64748004-64748023 Msa0782090:CDS 30.0%
GAAAAAAAAACCAAGAACAC+CGG + chr5_2:64748159-64748178 Msa0782090:intron 30.0%
CAAAGTTATTATGACCTTTC+TGG - chr5_2:64748259-64748278 None:intergenic 30.0%
CATAAAAGAAAACAAGCTGT+AGG - chr5_2:64748502-64748521 None:intergenic 30.0%
! TCGTCCTTTTGAATATGTAA+TGG + chr5_2:64748601-64748620 Msa0782090:CDS 30.0%
TATGTTGAGAGATAGCTAAT+GGG - chr5_2:64748770-64748789 None:intergenic 30.0%
AAATACAAGAGAAAACTTGG+GGG + chr5_2:64749092-64749111 Msa0782090:CDS 30.0%
AAACACAAAGTGTGGTTATT+TGG - chr5_2:64749155-64749174 None:intergenic 30.0%
!! CTACATCTTTTAAAGAAAGG+TGG - chr5_2:64749311-64749330 None:intergenic 30.0%
!! GAGCTACATCTTTTAAAGAA+AGG - chr5_2:64749314-64749333 None:intergenic 30.0%
!!! ACTGTTTGCTTTGGAAATTT+TGG - chr5_2:64749481-64749500 None:intergenic 30.0%
AAAGGAACAGATCATTCAAT+TGG + chr5_2:64749536-64749555 Msa0782090:CDS 30.0%
AGAAACTATAGGCTACAAAA+CGG + chr5_2:64749605-64749624 Msa0782090:CDS 30.0%
ATTTACTGAATTCATCTAGC+AGG - chr5_2:64749768-64749787 None:intergenic 30.0%
!! TTGTGTATAGCAGGTATTGA+GGG + chr5_2:64744363-64744382 Msa0782090:CDS 35.0%
! CATTTGGGAGCTTTATACAA+TGG + chr5_2:64744552-64744571 Msa0782090:CDS 35.0%
AAGTTTCATGTTAGAGAGTG+TGG + chr5_2:64744798-64744817 Msa0782090:CDS 35.0%
AAATTGAATTGAAGCAGGGA+TGG - chr5_2:64745038-64745057 None:intergenic 35.0%
GTCAATAACTGTGAGTTAGA+AGG + chr5_2:64745173-64745192 Msa0782090:CDS 35.0%
! TGGATCTTTTTCTCCATCAT+TGG - chr5_2:64745222-64745241 None:intergenic 35.0%
ATTTCCAAACATGATGTCAG+TGG - chr5_2:64745242-64745261 None:intergenic 35.0%
! TGTTGAAGATTTGGAATTGG+AGG - chr5_2:64745328-64745347 None:intergenic 35.0%
CTTCAACAAATGGAGATAAG+TGG + chr5_2:64745340-64745359 Msa0782090:intron 35.0%
ATCTTTAGCGCTTTCAATTG+AGG - chr5_2:64745415-64745434 None:intergenic 35.0%
TGTCATCTGATGTTGTAGTA+AGG - chr5_2:64745606-64745625 None:intergenic 35.0%
TACAGACAGAATACACACTT+TGG - chr5_2:64745662-64745681 None:intergenic 35.0%
! ATTTGCTTGATGACCATACA+TGG + chr5_2:64745833-64745852 Msa0782090:intron 35.0%
CAAATGATCCTGAAAAGTAG+TGG - chr5_2:64745919-64745938 None:intergenic 35.0%
!! CACTACTTTTCAGGATCATT+TGG + chr5_2:64745917-64745936 Msa0782090:intron 35.0%
TGCTAAAACCTTGACTTCAT+TGG + chr5_2:64746009-64746028 Msa0782090:CDS 35.0%
CAATTCTTCCAATGAAGTCA+AGG - chr5_2:64746020-64746039 None:intergenic 35.0%
TTGACAATACAAGATTGCCA+TGG + chr5_2:64746037-64746056 Msa0782090:CDS 35.0%
GAAGAGATCAGAAAACTAGA+AGG + chr5_2:64746083-64746102 Msa0782090:CDS 35.0%
AGAGATCAGAAAACTAGAAG+GGG + chr5_2:64746085-64746104 Msa0782090:CDS 35.0%
TTGGATATTGATGGGAAGAA+TGG - chr5_2:64746294-64746313 None:intergenic 35.0%
! GGAACTTGTTTGGATATTGA+TGG - chr5_2:64746303-64746322 None:intergenic 35.0%
! AGCTCAATTTGGAACTTGTT+TGG - chr5_2:64746313-64746332 None:intergenic 35.0%
! ATGGTAGTTTTCTGGACATA+TGG - chr5_2:64746383-64746402 None:intergenic 35.0%
! GAAAACGGATCTGAAATTGA+AGG + chr5_2:64746708-64746727 Msa0782090:CDS 35.0%
!! TGAAGGCATCTTTCAAATGA+AGG + chr5_2:64746725-64746744 Msa0782090:CDS 35.0%
!! GAAGGCATCTTTCAAATGAA+GGG + chr5_2:64746726-64746745 Msa0782090:CDS 35.0%
TTGGCAAATTGACACACTTA+AGG - chr5_2:64746797-64746816 None:intergenic 35.0%
TGCCAAAGCTAATGTACATA+TGG + chr5_2:64746811-64746830 Msa0782090:CDS 35.0%
TTGAAGGCTTACACTATGTT+TGG - chr5_2:64746844-64746863 None:intergenic 35.0%
TAGACTAGAGTCTTGATTGA+GGG - chr5_2:64747144-64747163 None:intergenic 35.0%
! TGACATACATCATTCAGGTT+TGG - chr5_2:64747257-64747276 None:intergenic 35.0%
AACCTGAATGATGTATGTCA+AGG + chr5_2:64747257-64747276 Msa0782090:CDS 35.0%
ACCTGAATGATGTATGTCAA+GGG + chr5_2:64747258-64747277 Msa0782090:CDS 35.0%
ACAATTGTGCACCAAAAGAT+TGG - chr5_2:64747306-64747325 None:intergenic 35.0%
AACTTCAACAACTACTGTTG+AGG + chr5_2:64747340-64747359 Msa0782090:CDS 35.0%
! ACATGCTACAAAGCTTTGAT+CGG + chr5_2:64747363-64747382 Msa0782090:CDS 35.0%
CAAGTTTGGTAAAGGAATAG+GGG - chr5_2:64747608-64747627 None:intergenic 35.0%
GTCAAGTTTGGTAAAGGAAT+AGG - chr5_2:64747610-64747629 None:intergenic 35.0%
GATTTCATTCTGCGGTAAAA+AGG - chr5_2:64747843-64747862 None:intergenic 35.0%
!! ATAACCCTTTTTCACAGTGT+TGG + chr5_2:64747923-64747942 Msa0782090:intron 35.0%
TCATTACTTTGTGTAGGAGT+TGG + chr5_2:64747985-64748004 Msa0782090:intron 35.0%
! TTTGTGTAGGAGTTGGTTAA+AGG + chr5_2:64747992-64748011 Msa0782090:intron 35.0%
GTTGGTTAAAGGACAATCAA+TGG + chr5_2:64748003-64748022 Msa0782090:CDS 35.0%
!!! TTTTGTTGGCTCATCAAACA+TGG - chr5_2:64748034-64748053 None:intergenic 35.0%
AGCTGGTATTACATTGTTTG+AGG - chr5_2:64748091-64748110 None:intergenic 35.0%
!!! TGATTTTTTTCCGGTGTTCT+TGG - chr5_2:64748172-64748191 None:intergenic 35.0%
!! TCTATTTCTTTGAGACACTG+TGG - chr5_2:64748527-64748546 None:intergenic 35.0%
ACAGTGTCTCAAAGAAATAG+AGG + chr5_2:64748526-64748545 Msa0782090:intron 35.0%
CAGTGTCTCAAAGAAATAGA+GGG + chr5_2:64748527-64748546 Msa0782090:intron 35.0%
TATATCTGCATTCTTGAACG+CGG - chr5_2:64748703-64748722 None:intergenic 35.0%
CTATGTTGAGAGATAGCTAA+TGG - chr5_2:64748771-64748790 None:intergenic 35.0%
TGATTTATTGTTTGCCACAG+AGG + chr5_2:64748847-64748866 Msa0782090:intron 35.0%
AAAAAACTGTTGTGGCTAAC+CGG + chr5_2:64748977-64748996 Msa0782090:intron 35.0%
GGCAGGAACAAAAACAAAAA+AGG - chr5_2:64749008-64749027 None:intergenic 35.0%
TTCCATAGGATTGAGATCAT+TGG - chr5_2:64749118-64749137 None:intergenic 35.0%
TGCAGATAACTTAGTCGAAA+AGG + chr5_2:64749185-64749204 Msa0782090:CDS 35.0%
! AAAGATGTAGCTCTATCAGA+TGG + chr5_2:64749321-64749340 Msa0782090:CDS 35.0%
GCATAGTGTCTATTATAGCT+CGG - chr5_2:64749350-64749369 None:intergenic 35.0%
! TGAAAGAGCATAAGATGCTT+TGG - chr5_2:64749383-64749402 None:intergenic 35.0%
GGTCACAGAAAATTTGTCTA+TGG - chr5_2:64749421-64749440 None:intergenic 35.0%
TTTGGAAGAAAGAGTAATGG+CGG - chr5_2:64749463-64749482 None:intergenic 35.0%
TTCCAAAGCAAACAGTTTCT+TGG + chr5_2:64749485-64749504 Msa0782090:CDS 35.0%
ATCCAAGAAACTGTTTGCTT+TGG - chr5_2:64749490-64749509 None:intergenic 35.0%
AACATATCTTCAAGAGGAGA+AGG + chr5_2:64749569-64749588 Msa0782090:CDS 35.0%
TGGAAGATCAAATGAAAGCT+CGG + chr5_2:64749664-64749683 Msa0782090:CDS 35.0%
TATATCTAATGCCGCGATCA+AGG + chr5_2:64744317-64744336 Msa0782090:CDS 40.0%
! CTTGTGTATAGCAGGTATTG+AGG + chr5_2:64744362-64744381 Msa0782090:CDS 40.0%
CTTCTGATACGTGATTCTGA+GGG + chr5_2:64744441-64744460 Msa0782090:CDS 40.0%
TTCTGATACGTGATTCTGAG+GGG + chr5_2:64744442-64744461 Msa0782090:CDS 40.0%
! TTCTGAGGGGATAGAATGTT+TGG + chr5_2:64744455-64744474 Msa0782090:CDS 40.0%
TCTTCTTCTGCAAGTTGCAT+TGG + chr5_2:64744508-64744527 Msa0782090:CDS 40.0%
TACAATGGTCAAATGCCTCT+TGG + chr5_2:64744567-64744586 Msa0782090:CDS 40.0%
TTCTCAAAATGACCACCAAG+AGG - chr5_2:64744585-64744604 None:intergenic 40.0%
! GTGAAGAGACATGTTAGCTT+TGG - chr5_2:64744636-64744655 None:intergenic 40.0%
ACTTGCAGTTGCTCAAAATC+TGG + chr5_2:64744656-64744675 Msa0782090:CDS 40.0%
! ATCCCAATCACTTTAGCTCA+AGG + chr5_2:64744837-64744856 Msa0782090:CDS 40.0%
AACAAGAGTAAGCTCTTCCA+GGG - chr5_2:64744964-64744983 None:intergenic 40.0%
TAACAAGAGTAAGCTCTTCC+AGG - chr5_2:64744965-64744984 None:intergenic 40.0%
GGTGTCTATCAATACTTCCA+TGG + chr5_2:64745082-64745101 Msa0782090:CDS 40.0%
!! GAAGGTATCTTTCAGCTAGT+TGG + chr5_2:64745191-64745210 Msa0782090:intron 40.0%
CTAGTTGGACTAACCAATGA+TGG + chr5_2:64745206-64745225 Msa0782090:intron 40.0%
AGATCCACTGACATCATGTT+TGG + chr5_2:64745235-64745254 Msa0782090:intron 40.0%
TTACATACATACCTGAGCTG+AGG - chr5_2:64745284-64745303 None:intergenic 40.0%
CTCAGGTATGTATGTAAGAG+TGG + chr5_2:64745287-64745306 Msa0782090:intron 40.0%
ATCTTCTCATCCTGTTTAGC+AGG + chr5_2:64745382-64745401 Msa0782090:intron 40.0%
TCAGCTCAATCAAATCGTTG+AGG + chr5_2:64745447-64745466 Msa0782090:CDS 40.0%
AGAGTTACAGCAAGAGTAAG+TGG - chr5_2:64745509-64745528 None:intergenic 40.0%
! ACAGAATACACACTTTGGAG+TGG - chr5_2:64745657-64745676 None:intergenic 40.0%
!!! AAGAATCTGCTTTTTCCCGT+TGG + chr5_2:64745783-64745802 Msa0782090:intron 40.0%
! TTGGTCTTCCCAGTCTTATA+AGG + chr5_2:64745936-64745955 Msa0782090:CDS 40.0%
ACTAATATCATGTCCGATGC+TGG + chr5_2:64745964-64745983 Msa0782090:CDS 40.0%
CTAATATCATGTCCGATGCT+GGG + chr5_2:64745965-64745984 Msa0782090:CDS 40.0%
ATGAACAATGAACCCAGCAT+CGG - chr5_2:64745980-64745999 None:intergenic 40.0%
!! TGAAGTCAAGGTTTTAGCAG+TGG - chr5_2:64746008-64746027 None:intergenic 40.0%
TAGAAGGGGAGAAATAGTTC+AGG + chr5_2:64746099-64746118 Msa0782090:CDS 40.0%
ATGAAACGGGTAGTATACAC+TGG - chr5_2:64746201-64746220 None:intergenic 40.0%
AGTCCTCTTGCAAATGAAAC+GGG - chr5_2:64746214-64746233 None:intergenic 40.0%
CAGTCCTCTTGCAAATGAAA+CGG - chr5_2:64746215-64746234 None:intergenic 40.0%
! TGCAAGAGGACTGGTAAAAT+TGG + chr5_2:64746222-64746241 Msa0782090:CDS 40.0%
CCAAAACAGGAAGCTCAATT+TGG - chr5_2:64746324-64746343 None:intergenic 40.0%
! CCAAATTGAGCTTCCTGTTT+TGG + chr5_2:64746321-64746340 Msa0782090:CDS 40.0%
GGACATATGGCGATCATATT+TGG - chr5_2:64746370-64746389 None:intergenic 40.0%
! CATGTTGCATGGTAGTTTTC+TGG - chr5_2:64746391-64746410 None:intergenic 40.0%
ACATCGTTCATGACAAGAAG+TGG - chr5_2:64746424-64746443 None:intergenic 40.0%
CTTCTTGTCATGAACGATGT+TGG + chr5_2:64746424-64746443 Msa0782090:CDS 40.0%
AAGACAATGAGAGGGTGAAA+AGG - chr5_2:64746525-64746544 None:intergenic 40.0%
AGTATGCTATTACAGGACGA+AGG + chr5_2:64746639-64746658 Msa0782090:intron 40.0%
CTTCTTGTCCATTCTCACTT+GGG - chr5_2:64746755-64746774 None:intergenic 40.0%
ACTTCTTGTCCATTCTCACT+TGG - chr5_2:64746756-64746775 None:intergenic 40.0%
ATGGACAAGAAGTGATATCC+TGG + chr5_2:64746763-64746782 Msa0782090:CDS 40.0%
ACACTTAAGGTCTTCTAACC+AGG - chr5_2:64746784-64746803 None:intergenic 40.0%
AACTGTGAGAAGCAAACTTG+AGG - chr5_2:64747032-64747051 None:intergenic 40.0%
!! TTCCAGTTCTGGAAACACAT+GGG - chr5_2:64747114-64747133 None:intergenic 40.0%
!! ATTCCAGTTCTGGAAACACA+TGG - chr5_2:64747115-64747134 None:intergenic 40.0%
AGGGTAAGATATTCCAGTTC+TGG - chr5_2:64747125-64747144 None:intergenic 40.0%
CTAGACTAGAGTCTTGATTG+AGG - chr5_2:64747145-64747164 None:intergenic 40.0%
! CAAGTGTTTAAAGTTGGTCC+TGG + chr5_2:64747167-64747186 Msa0782090:CDS 40.0%
TCCCTTGACATACATCATTC+AGG - chr5_2:64747262-64747281 None:intergenic 40.0%
! TCAGACACTGACCAATCTTT+TGG + chr5_2:64747292-64747311 Msa0782090:CDS 40.0%
! CATGCTACAAAGCTTTGATC+GGG + chr5_2:64747364-64747383 Msa0782090:CDS 40.0%
! ATGCTACAAAGCTTTGATCG+GGG + chr5_2:64747365-64747384 Msa0782090:CDS 40.0%
TTATGTCGTGTAAGTGTGGA+CGG - chr5_2:64747495-64747514 None:intergenic 40.0%
CAACTTATGTCGTGTAAGTG+TGG - chr5_2:64747499-64747518 None:intergenic 40.0%
TCCTTTACCAAACTTGACAG+AGG + chr5_2:64747612-64747631 Msa0782090:CDS 40.0%
ACCTCTGTCAAGTTTGGTAA+AGG - chr5_2:64747616-64747635 None:intergenic 40.0%
TATCGTACCTCTGTCAAGTT+TGG - chr5_2:64747622-64747641 None:intergenic 40.0%
TTTACCGCAGAATGAAATCG+TGG + chr5_2:64747844-64747863 Msa0782090:intron 40.0%
TCCTCCAACACTGTGAAAAA+GGG - chr5_2:64747930-64747949 None:intergenic 40.0%
TTCCTCCAACACTGTGAAAA+AGG - chr5_2:64747931-64747950 None:intergenic 40.0%
! ATTCTCCAAGTGGCTTTTGT+TGG - chr5_2:64748048-64748067 None:intergenic 40.0%
GTACTTACAGATTCTCCAAG+TGG - chr5_2:64748058-64748077 None:intergenic 40.0%
GTACAGTATATACGTTCAGC+TGG - chr5_2:64748108-64748127 None:intergenic 40.0%
!!! GGTTAGCCACAACAGTTTTT+TGG - chr5_2:64748978-64748997 None:intergenic 40.0%
CCTTCATCATACTCTTCCAT+AGG - chr5_2:64749132-64749151 None:intergenic 40.0%
! CCTATGGAAGAGTATGATGA+AGG + chr5_2:64749129-64749148 Msa0782090:CDS 40.0%
CACTTCAGAAACACAAAGTG+TGG - chr5_2:64749163-64749182 None:intergenic 40.0%
AGAAGTTAAGAGCCGTTAGA+AGG - chr5_2:64749284-64749303 None:intergenic 40.0%
TATAGGCTACAAAACGGAGT+TGG + chr5_2:64749611-64749630 Msa0782090:CDS 40.0%
AGCTCGGCAACAAATATTTG+AGG + chr5_2:64749680-64749699 Msa0782090:CDS 40.0%
CAGGATTTCTTGCAACAATG+TGG - chr5_2:64749749-64749768 None:intergenic 40.0%
GATGATTGAGAAACTCGTCC+TGG - chr5_2:64744269-64744288 None:intergenic 45.0%
TAATGCCGCGATCAAGGATT+TGG + chr5_2:64744323-64744342 Msa0782090:CDS 45.0%
GATCAAGGATTTGGCCGAAA+AGG + chr5_2:64744332-64744351 Msa0782090:CDS 45.0%
! ACACAAGACCTCTGCCTTTT+CGG - chr5_2:64744349-64744368 None:intergenic 45.0%
!! TGTATAGCAGGTATTGAGGG+AGG + chr5_2:64744366-64744385 Msa0782090:CDS 45.0%
GCTTCTGATACGTGATTCTG+AGG + chr5_2:64744440-64744459 Msa0782090:CDS 45.0%
AATGGTCAAATGCCTCTTGG+TGG + chr5_2:64744570-64744589 Msa0782090:CDS 45.0%
GGCCTTGAGCTAAAGTGATT+GGG - chr5_2:64744842-64744861 None:intergenic 45.0%
AGGCCTTGAGCTAAAGTGAT+TGG - chr5_2:64744843-64744862 None:intergenic 45.0%
CCAAACACTCCAGTTGTACA+AGG - chr5_2:64744863-64744882 None:intergenic 45.0%
! CCTTGTACAACTGGAGTGTT+TGG + chr5_2:64744860-64744879 Msa0782090:CDS 45.0%
CGGATTGTTGTGTAAAGCCA+TGG - chr5_2:64745102-64745121 None:intergenic 45.0%
TTCTCATCCTGTTTAGCAGG+AGG + chr5_2:64745385-64745404 Msa0782090:intron 45.0%
TCTCATCCTGTTTAGCAGGA+GGG + chr5_2:64745386-64745405 Msa0782090:intron 45.0%
GTGGATGTTTGTGTACCTGA+GGG - chr5_2:64745490-64745509 None:intergenic 45.0%
AGTGGATGTTTGTGTACCTG+AGG - chr5_2:64745491-64745510 None:intergenic 45.0%
!! CTACTGTGCCACTACTTTTC+AGG + chr5_2:64745908-64745927 Msa0782090:intron 45.0%
CTACCCGTTTCATTTGCAAG+AGG + chr5_2:64746208-64746227 Msa0782090:CDS 45.0%
CGTTTCATTTGCAAGAGGAC+TGG + chr5_2:64746213-64746232 Msa0782090:CDS 45.0%
ACCACTAGGATCTTCAACAG+AGG - chr5_2:64746942-64746961 None:intergenic 45.0%
GGTAGAACAGTGTGAGGAAT+TGG + chr5_2:64746959-64746978 Msa0782090:CDS 45.0%
AGAAGCAAACTTGAGGACTC+TGG - chr5_2:64747025-64747044 None:intergenic 45.0%
ATCCCATGTGTTTCCAGAAC+TGG + chr5_2:64747109-64747128 Msa0782090:CDS 45.0%
CCTTCCACGATTTCATTCTG+CGG - chr5_2:64747851-64747870 None:intergenic 45.0%
!! ACCCTTTTTCACAGTGTTGG+AGG + chr5_2:64747926-64747945 Msa0782090:intron 45.0%
ATGAGCCAACAAAAGCCACT+TGG + chr5_2:64748040-64748059 Msa0782090:CDS 45.0%
ATAGAGGGCCTAAGCATTCA+AGG + chr5_2:64748542-64748561 Msa0782090:CDS 45.0%
TAGAGGGCCTAAGCATTCAA+GGG + chr5_2:64748543-64748562 Msa0782090:CDS 45.0%
TAGAACCCCCTTGAATGCTT+AGG - chr5_2:64748553-64748572 None:intergenic 45.0%
TCTTGTGCAGAGAGTTGAGA+AGG + chr5_2:64748662-64748681 Msa0782090:intron 45.0%
AGTTGAGAAGGCTACTGAAG+AGG + chr5_2:64748674-64748693 Msa0782090:CDS 45.0%
TGGGCTTGATTGTGAGCAAT+CGG - chr5_2:64748751-64748770 None:intergenic 45.0%
! GAAGCTGATTTCATACTGGC+AGG - chr5_2:64749025-64749044 None:intergenic 45.0%
! GGCTGAAGCTGATTTCATAC+TGG - chr5_2:64749029-64749048 None:intergenic 45.0%
GGCCAATGATCTCAATCCTA+TGG + chr5_2:64749113-64749132 Msa0782090:CDS 45.0%
AGACTCTTCCAGGTCAGAAA+GGG - chr5_2:64749211-64749230 None:intergenic 45.0%
AAGACTCTTCCAGGTCAGAA+AGG - chr5_2:64749212-64749231 None:intergenic 45.0%
TAACAGCCTTCGCCTTCTAA+CGG + chr5_2:64749269-64749288 Msa0782090:CDS 45.0%
TCTTGGATGATGCTCAACAG+AGG + chr5_2:64749502-64749521 Msa0782090:CDS 45.0%
CTTGGATGATGCTCAACAGA+GGG + chr5_2:64749503-64749522 Msa0782090:CDS 45.0%
! ACAGAGGGAAGCAGCTTTAA+AGG + chr5_2:64749518-64749537 Msa0782090:CDS 45.0%
AAACGGAGTTGGAGAATGTG+AGG + chr5_2:64749622-64749641 Msa0782090:CDS 45.0%
GAGAAACTCGTCCTGGAAAC+CGG - chr5_2:64744262-64744281 None:intergenic 50.0%
TTCGGCCAAATCCTTGATCG+CGG - chr5_2:64744331-64744350 None:intergenic 50.0%
! GCAGAGGTCTTGTGTATAGC+AGG + chr5_2:64744354-64744373 Msa0782090:CDS 50.0%
GGTTGACACTTGTCTGATCG+AGG + chr5_2:64744476-64744495 Msa0782090:CDS 50.0%
GACACTTGTCTGATCGAGGT+AGG + chr5_2:64744480-64744499 Msa0782090:CDS 50.0%
TGCTCAAAATCTGGCGCAAC+TGG + chr5_2:64744665-64744684 Msa0782090:CDS 50.0%
! TGTTAGAGAGTGTGGTGTGC+TGG + chr5_2:64744806-64744825 Msa0782090:CDS 50.0%
! AGCTCAAGGCCTTGTACAAC+TGG + chr5_2:64744851-64744870 Msa0782090:CDS 50.0%
GATCATTGAGCTTTCTGCCC+TGG + chr5_2:64744944-64744963 Msa0782090:CDS 50.0%
TGGAGAATCTACCTCAGCTC+AGG + chr5_2:64745270-64745289 Msa0782090:intron 50.0%
ATTGGCACTGCAATTCCCTC+AGG + chr5_2:64745472-64745491 Msa0782090:CDS 50.0%
GCAAAGACGAGCATGTTGCA+TGG - chr5_2:64746402-64746421 None:intergenic 50.0%
AAGGGAGTCCCAAGTGAGAA+TGG + chr5_2:64746744-64746763 Msa0782090:CDS 50.0%
CAGGACTCTCAAGACAGAGA+TGG - chr5_2:64746919-64746938 None:intergenic 50.0%
CTAGGATCTTCAACAGAGGC+AGG - chr5_2:64746938-64746957 None:intergenic 50.0%
GCCTCTGTTGAAGATCCTAG+TGG + chr5_2:64746938-64746957 Msa0782090:CDS 50.0%
CCTCACACTGTTCTACCACT+AGG - chr5_2:64746956-64746975 None:intergenic 50.0%
CCTAGTGGTAGAACAGTGTG+AGG + chr5_2:64746953-64746972 Msa0782090:CDS 50.0%
CTGGAAACACATGGGATGTG+CGG - chr5_2:64747106-64747125 None:intergenic 50.0%
TTGGTCCTGGTGTGAGAGAT+GGG + chr5_2:64747180-64747199 Msa0782090:CDS 50.0%
CCGCAGAATGAAATCGTGGA+AGG + chr5_2:64747848-64747867 Msa0782090:intron 50.0%
AGAGGGCCTAAGCATTCAAG+GGG + chr5_2:64748544-64748563 Msa0782090:CDS 50.0%
GTTTCTCGATCTTGCCTCTG+TGG - chr5_2:64748864-64748883 None:intergenic 50.0%
CTGACCTGGAAGAGTCTTTG+AGG + chr5_2:64749214-64749233 Msa0782090:CDS 50.0%
GCATCCTCAAAGACTCTTCC+AGG - chr5_2:64749221-64749240 None:intergenic 50.0%
! GTCTTTGAGGATGCCTCTGA+AGG + chr5_2:64749227-64749246 Msa0782090:CDS 50.0%
TAAGAGCCGTTAGAAGGCGA+AGG - chr5_2:64749278-64749297 None:intergenic 50.0%
GGATTTGGCCGAAAAGGCAG+AGG + chr5_2:64744338-64744357 Msa0782090:CDS 55.0%
GTTGGTCCTGGTGTGAGAGA+TGG + chr5_2:64747179-64747198 Msa0782090:CDS 55.0%
ACTCTCCCATCTCTCACACC+AGG - chr5_2:64747188-64747207 None:intergenic 55.0%
TGGTGTGAGAGATGGGAGAG+TGG + chr5_2:64747187-64747206 Msa0782090:CDS 55.0%
GAGGGCCTAAGCATTCAAGG+GGG + chr5_2:64748545-64748564 Msa0782090:CDS 55.0%
CGAAAAGGCCCTTTCTGACC+TGG + chr5_2:64749200-64749219 Msa0782090:CDS 55.0%
GACCGAAGCTCATCACAACG+AGG + chr5_2:64749437-64749456 Msa0782090:CDS 55.0%
GGCCTCGTTGTGATGAGCTT+CGG - chr5_2:64749442-64749461 None:intergenic 55.0%
AGGCAGCCCTCCTGCTAAAC+AGG - chr5_2:64745395-64745414 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 64744252 64749951 64744252 ID=Msa0782090;Name=Msa0782090
chr5_2 mRNA 64744252 64749951 64744252 ID=Msa0782090-mRNA-1;Parent=Msa0782090;Name=Msa0782090-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.75|0.66|1|1|1|9|175|1184
chr5_2 exon 64744252 64745194 64744252 ID=Msa0782090-mRNA-1:exon:19423;Parent=Msa0782090-mRNA-1
chr5_2 exon 64745404 64745493 64745404 ID=Msa0782090-mRNA-1:exon:19424;Parent=Msa0782090-mRNA-1
chr5_2 exon 64745930 64746513 64745930 ID=Msa0782090-mRNA-1:exon:19425;Parent=Msa0782090-mRNA-1
chr5_2 exon 64746654 64747386 64746654 ID=Msa0782090-mRNA-1:exon:19426;Parent=Msa0782090-mRNA-1
chr5_2 exon 64747470 64747633 64747470 ID=Msa0782090-mRNA-1:exon:19427;Parent=Msa0782090-mRNA-1
chr5_2 exon 64748001 64748069 64748001 ID=Msa0782090-mRNA-1:exon:19428;Parent=Msa0782090-mRNA-1
chr5_2 exon 64748530 64748622 64748530 ID=Msa0782090-mRNA-1:exon:19429;Parent=Msa0782090-mRNA-1
chr5_2 exon 64748672 64748803 64748672 ID=Msa0782090-mRNA-1:exon:19430;Parent=Msa0782090-mRNA-1
chr5_2 exon 64749030 64749951 64749030 ID=Msa0782090-mRNA-1:exon:19431;Parent=Msa0782090-mRNA-1
chr5_2 CDS 64744252 64745194 64744252 ID=Msa0782090-mRNA-1:cds;Parent=Msa0782090-mRNA-1
chr5_2 CDS 64745404 64745493 64745404 ID=Msa0782090-mRNA-1:cds;Parent=Msa0782090-mRNA-1
chr5_2 CDS 64745930 64746513 64745930 ID=Msa0782090-mRNA-1:cds;Parent=Msa0782090-mRNA-1
chr5_2 CDS 64746654 64747386 64746654 ID=Msa0782090-mRNA-1:cds;Parent=Msa0782090-mRNA-1
chr5_2 CDS 64747470 64747633 64747470 ID=Msa0782090-mRNA-1:cds;Parent=Msa0782090-mRNA-1
chr5_2 CDS 64748001 64748069 64748001 ID=Msa0782090-mRNA-1:cds;Parent=Msa0782090-mRNA-1
chr5_2 CDS 64748530 64748622 64748530 ID=Msa0782090-mRNA-1:cds;Parent=Msa0782090-mRNA-1
chr5_2 CDS 64748672 64748803 64748672 ID=Msa0782090-mRNA-1:cds;Parent=Msa0782090-mRNA-1
chr5_2 CDS 64749030 64749776 64749030 ID=Msa0782090-mRNA-1:cds;Parent=Msa0782090-mRNA-1
chr5_2 three_prime_UTR 64749777 64749951 64749777 ID=Msa0782090-mRNA-1:three_prime_utr;Parent=Msa0782090-mRNA-1
Gene Sequence

>Msa0782090

ATGTTTTCCGGTTTCCAGGACGAGTTTCTCAATCATCACAGAACTTTGTTTCTCAGTTATTTGGATATATCTAATGCCGCGATCAAGGATTTGGCCGAAAAGGCAGAGGTCTTGTGTATAGCAGGTATTGAGGGAGGTGCTAAAAATATTATCCCTGACATATTTCAAAGTATAAATCATTTAAATGAGCTTCTGATACGTGATTCTGAGGGGATAGAATGTTTGGTTGACACTTGTCTGATCGAGGTAGGAACTCTCTTCTTCTGCAAGTTGCATTGGCTAAGAATTGAGCATATGAAGCATTTGGGAGCTTTATACAATGGTCAAATGCCTCTTGGTGGTCATTTTGAGAATCTAGAAGACCTATATATAAGTCATTGTCCAAAGCTAACATGTCTCTTCACACTTGCAGTTGCTCAAAATCTGGCGCAACTGGAAAAATTACAAGTATTATCTTGTCCTGAACTTCAGCATATACTAATCGATGATGATAGAGATGAGATAAGTGCGTATGATCACAGACTACTGTTGTTTCCAAAATTAAAAAAGTTTCATGTTAGAGAGTGTGGTGTGCTGGAATACATAATCCCAATCACTTTAGCTCAAGGCCTTGTACAACTGGAGTGTTTGGAAATTGTATGTAATGAGAATTTGAAATACGTATTTGGTCAAAGCACACGAAATGAACTCAAGATCATTGAGCTTTCTGCCCTGGAAGAGCTTACTCTTGTTAACTTGCCGAATATCAATAGCATTTGTCCAGAAGATTGTTATCTAATGTGGCCATCCCTGCTTCAATTCAATTTGCAAAATTGTGGAGAGTTTTTCATGGTGTCTATCAATACTTCCATGGCTTTACACAACAATCCGATAATCAATGAAGCTTCACATCAAACTTTGCAAAATATAACAGAAGTTCGAGTCAATAACTGTGAGTTAGAAGGAGGGCTGCCTCAATTGAAAGCGCTAAAGATAGAAAAGTGCAATCAGCTCAATCAAATCGTTGAGGATATTGGCACTGCAATTCCCTCAGGATCATTTGGTCTTCCCAGTCTTATAAGGTTAACACTAATATCATGTCCGATGCTGGGTTCATTGTTCATAGCATCCACTGCTAAAACCTTGACTTCATTGGAAGAATTGACAATACAAGATTGCCATGGTTTAAAGCAATTAGTAACTTATGGAAGAGATCAGAAAACTAGAAGGGGAGAAATAGTTCAGGATAATCATGACTTTCAGAGTTATACATCAATGTTCGAAAGCTTGAAAAAGATTAGTGTTATGAGATGTCATCTGCTCCAGTGTATACTACCCGTTTCATTTGCAAGAGGACTGGTAAAATTGGAAGCTATAGAAATCACAGACACTCCTGAGTTGAAATATATATTTGGCCATTCTTCCCATCAATATCCAAACAAGTTCCAAATTGAGCTTCCTGTTTTGGAAAAATTTGCACTCTACGATATACCAAATATGATCGCCATATGTCCAGAAAACTACCATGCAACATGCTCGTCTTTGCCACTTCTTGTCATGAACGATGTTGGTCTATCAATGAATAATTTGATGGTTGATTCTGGAGCGACACACTCAGATCTTAGTTCTGATAAAACAGACGAAGGAGAAACGAGTATGAGTATTGAGAAGAAGTTAATGTCTGTTATTATTGAAAACGGATCTGAAATTGAAGGCATCTTTCAAATGAAGGGAGTCCCAAGTGAGAATGGACAAGAAGTGATATCCTGGTTAGAAGACCTTAAGTGTGTCAATTTGCCAAAGCTAATGTACATATGGATGGGTGCCAAACATAGTGTAAGCCTTCAACATCTTCACAAAATAAACATTTGCAATTGTCCGAAACTAAAGTCTATCTTCTCCATCTCTGTCTTGAGAGTCCTGCCTCTGTTGAAGATCCTAGTGGTAGAACAGTGTGAGGAATTGGAGCAAATCATTGAAGATGATGCTGAAGAAAATGAAAATGTCCAGAGTCCTCAAGTTTGCTTCTCACAGTTAAAGTTTCTTCTTGTCACACACTGCAACAAATTGAAGCATTTGTTTTATATCCGCACATCCCATGTGTTTCCAGAACTGGAATATCTTACCCTCAATCAAGACTCTAGTCTAGTTCAAGTGTTTAAAGTTGGTCCTGGTGTGAGAGATGGGAGAGTGGAAGTTTTGCTTCCGAAACTGAAACATGTAATGCTAATGCAACTGCCAAACCTGAATGATGTATGTCAAGGGATTGTTGAGTTTCAGACACTGACCAATCTTTTGGTGCACAATTGTCCAAAATTCTCAATAACTTCAACAACTACTGTTGAGGACATGCTACAAAGCTTTGATCGGGACAAGGAATTTGATTTCTATCTCCGTCCACACTTACACGACATAAGTTGTACAACAACAAACGGACACGTGCTCCTTACATCGAAGAACAAAAACAAAGAGATACAAGATTTAGAATCACAGGAGCAGAAACTGTCCCCTATTCCTTTACCAAACTTGACAGAGGAGTTGGTTAAAGGACAATCAATGGGTGAACCATGTTTGATGAGCCAACAAAAGCCACTTGGAGAATCTTGTCTCAAAGAAATAGAGGGCCTAAGCATTCAAGGGGGTTCTATATTAGAGAAAAATGTAACAGCAACAACTCGTCCTTTTGAATATGTAATGAGAGTTGAGAAGGCTACTGAAGAGGAAACCGCGTTCAAGAATGCAGATATAGTAACTTCGTCAATTCATTCTGAATCCGATTGCTCACAATCAAGCCCATTAGCTATCTCTCAACATAGACGACATCCACATTATGAAATCAGCTTCAGCCAAACTGATACTTACAACAATAAAAAAAACAAAGGATGTCCTATAAATACAAGAGAAAACTTGGGGGCCAATGATCTCAATCCTATGGAAGAGTATGATGAAGGCCAAATAACCACACTTTGTGTTTCTGAAGTGACTGCAGATAACTTAGTCGAAAAGGCCCTTTCTGACCTGGAAGAGTCTTTGAGGATGCCTCTGAAGGACATAGCTAGCTCAGAGGCTAACAGCCTTCGCCTTCTAACGGCTCTTAACTTCTTGTCCCACCTTTCTTTAAAAGATGTAGCTCTATCAGATGGACTCCGAGCTATAATAGACACTATGCACACAGAATTCCAAAGCATCTTATGCTCTTTCAAGCAAGCCTTTATTACCATAGACAAATTTTCTGTGACCGAAGCTCATCACAACGAGGCCGCCATTACTCTTTCTTCCAAAATTTCCAAAGCAAACAGTTTCTTGGATGATGCTCAACAGAGGGAAGCAGCTTTAAAGGAACAGATCATTCAATTGGAGAAAGAAATAACATATCTTCAAGAGGAGAAGGACAAATGCATTGAAGAAACTATAGGCTACAAAACGGAGTTGGAGAATGTGAGGAAAGACAAAAATCAAATTGTGGAAGATCAAATGAAAGCTCGGCAACAAATATTTGAGGTCGATTATAAATGGTCTGCTCTACGTAGTCAGTTTCAGTACAACCACATTGTTGCAAGAAATCCTGCTAGATGA

Protein sequence

>Msa0782090

MFSGFQDEFLNHHRTLFLSYLDISNAAIKDLAEKAEVLCIAGIEGGAKNIIPDIFQSINHLNELLIRDSEGIECLVDTCLIEVGTLFFCKLHWLRIEHMKHLGALYNGQMPLGGHFENLEDLYISHCPKLTCLFTLAVAQNLAQLEKLQVLSCPELQHILIDDDRDEISAYDHRLLLFPKLKKFHVRECGVLEYIIPITLAQGLVQLECLEIVCNENLKYVFGQSTRNELKIIELSALEELTLVNLPNINSICPEDCYLMWPSLLQFNLQNCGEFFMVSINTSMALHNNPIINEASHQTLQNITEVRVNNCELEGGLPQLKALKIEKCNQLNQIVEDIGTAIPSGSFGLPSLIRLTLISCPMLGSLFIASTAKTLTSLEELTIQDCHGLKQLVTYGRDQKTRRGEIVQDNHDFQSYTSMFESLKKISVMRCHLLQCILPVSFARGLVKLEAIEITDTPELKYIFGHSSHQYPNKFQIELPVLEKFALYDIPNMIAICPENYHATCSSLPLLVMNDVGLSMNNLMVDSGATHSDLSSDKTDEGETSMSIEKKLMSVIIENGSEIEGIFQMKGVPSENGQEVISWLEDLKCVNLPKLMYIWMGAKHSVSLQHLHKINICNCPKLKSIFSISVLRVLPLLKILVVEQCEELEQIIEDDAEENENVQSPQVCFSQLKFLLVTHCNKLKHLFYIRTSHVFPELEYLTLNQDSSLVQVFKVGPGVRDGRVEVLLPKLKHVMLMQLPNLNDVCQGIVEFQTLTNLLVHNCPKFSITSTTTVEDMLQSFDRDKEFDFYLRPHLHDISCTTTNGHVLLTSKNKNKEIQDLESQEQKLSPIPLPNLTEELVKGQSMGEPCLMSQQKPLGESCLKEIEGLSIQGGSILEKNVTATTRPFEYVMRVEKATEEETAFKNADIVTSSIHSESDCSQSSPLAISQHRRHPHYEISFSQTDTYNNKKNKGCPINTRENLGANDLNPMEEYDEGQITTLCVSEVTADNLVEKALSDLEESLRMPLKDIASSEANSLRLLTALNFLSHLSLKDVALSDGLRAIIDTMHTEFQSILCSFKQAFITIDKFSVTEAHHNEAAITLSSKISKANSFLDDAQQREAALKEQIIQLEKEITYLQEEKDKCIEETIGYKTELENVRKDKNQIVEDQMKARQQIFEVDYKWSALRSQFQYNHIVARNPAR*