Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607410 | XP_003607319.1 | 96.452 | 310 | 11 | 0 | 3 | 312 | 20 | 329 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607410 | sp|P23547|E13G_TOBAC | 58.280 | 314 | 126 | 3 | 4 | 312 | 30 | 343 | 1.73e-128 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014790 | Msa0607410 | 0.812909 | 3.343696e-51 | -8.615850e-47 |
| Msa0026120 | Msa0607410 | 0.843954 | 1.019870e-58 | -8.615850e-47 |
| Msa0043370 | Msa0607410 | 0.808554 | 2.925621e-50 | -8.615850e-47 |
| Msa0047230 | Msa0607410 | 0.803010 | 4.274800e-49 | -8.615850e-47 |
| Msa0070090 | Msa0607410 | 0.805513 | 1.287620e-49 | -8.615850e-47 |
| Msa0072830 | Msa0607410 | 0.808763 | 2.639748e-50 | -8.615850e-47 |
| Msa0072860 | Msa0607410 | 0.807874 | 4.083727e-50 | -8.615850e-47 |
| Msa0089010 | Msa0607410 | 0.808875 | 2.498385e-50 | -8.615850e-47 |
| Msa0090350 | Msa0607410 | 0.816087 | 6.623721e-52 | -8.615850e-47 |
| Msa0104390 | Msa0607410 | 0.811280 | 7.575016e-51 | -8.615850e-47 |
| Msa0112800 | Msa0607410 | 0.844636 | 6.688533e-59 | -8.615850e-47 |
| Msa0117300 | Msa0607410 | 0.811706 | 6.122723e-51 | -8.615850e-47 |
| Msa0607390 | Msa0607410 | 0.928797 | 1.734818e-92 | -8.615850e-47 |
| Msa0607400 | Msa0607410 | 0.864610 | 1.074036e-64 | -8.615850e-47 |
| Msa0607410 | Msa0607620 | 0.857663 | 1.399687e-62 | -8.615850e-47 |
| Msa0607410 | Msa0618260 | 0.804090 | 2.552755e-49 | -8.615850e-47 |
| Msa0607410 | Msa0629960 | 0.802410 | 5.684963e-49 | -8.615850e-47 |
| Msa0607410 | Msa0630000 | 0.808163 | 3.545113e-50 | -8.615850e-47 |
| Msa0607410 | Msa0636760 | 0.811333 | 7.378502e-51 | -8.615850e-47 |
| Msa0607410 | Msa0639880 | 0.814778 | 1.295674e-51 | -8.615850e-47 |
| Msa0607410 | Msa0641030 | 0.817401 | 3.360958e-52 | -8.615850e-47 |
| Msa0607410 | Msa0647620 | 0.808950 | 2.407410e-50 | -8.615850e-47 |
| Msa0607410 | Msa0647860 | 0.829857 | 4.071676e-55 | -8.615850e-47 |
| Msa0607410 | Msa0648200 | 0.814664 | 1.372775e-51 | -8.615850e-47 |
| Msa0607410 | Msa0657860 | 0.803151 | 3.997227e-49 | -8.615850e-47 |
| Msa0607410 | Msa0668000 | 0.800608 | 1.330902e-48 | -8.615850e-47 |
| Msa0607410 | Msa0684910 | 0.808616 | 2.838023e-50 | -8.615850e-47 |
| Msa0607410 | Msa0690410 | 0.937376 | 3.828546e-98 | -8.615850e-47 |
| Msa0607410 | Msa0690580 | 0.825489 | 4.557920e-54 | -8.615850e-47 |
| Msa0607410 | Msa0691140 | 0.812481 | 4.147746e-51 | -8.615850e-47 |
| Msa0607410 | Msa0691180 | 0.809671 | 1.685903e-50 | -8.615850e-47 |
| Msa0607410 | Msa0718920 | 0.821128 | 4.759649e-53 | -8.615850e-47 |
| Msa0607410 | Msa0741710 | 0.809371 | 1.955453e-50 | -8.615850e-47 |
| Msa0607410 | Msa0752540 | 0.836946 | 6.945634e-57 | -8.615850e-47 |
| Msa0607410 | Msa0752580 | 0.815744 | 7.900947e-52 | -8.615850e-47 |
| Msa0607410 | Msa0754190 | 0.836790 | 7.610640e-57 | -8.615850e-47 |
| Msa0607410 | Msa0754500 | 0.812069 | 5.103311e-51 | -8.615850e-47 |
| Msa0607410 | Msa0765040 | 0.814718 | 1.335883e-51 | -8.615850e-47 |
| Msa0607410 | Msa0770890 | 0.803237 | 3.837319e-49 | -8.615850e-47 |
| Msa0607410 | Msa0797240 | 0.800925 | 1.146299e-48 | -8.615850e-47 |
| Msa0607410 | Msa0807130 | 0.814790 | 1.287484e-51 | -8.615850e-47 |
| Msa0607410 | Msa0833080 | 0.818652 | 1.752667e-52 | -8.615850e-47 |
| Msa0607410 | Msa0840450 | 0.803726 | 3.037625e-49 | -8.615850e-47 |
| Msa0607410 | Msa0867810 | 0.814629 | 1.398017e-51 | -8.615850e-47 |
| Msa0607410 | Msa0883390 | 0.820648 | 6.136989e-53 | -8.615850e-47 |
| Msa0607410 | Msa0883410 | 0.831610 | 1.513756e-55 | -8.615850e-47 |
| Msa0607410 | Msa0883690 | 0.804125 | 2.509462e-49 | -8.615850e-47 |
| Msa0607410 | Msa0883700 | 0.803784 | 2.955015e-49 | -8.615850e-47 |
| Msa0607410 | Msa0936650 | 0.808217 | 3.451301e-50 | -8.615850e-47 |
| Msa0607410 | Msa0957800 | 0.809212 | 2.115879e-50 | -8.615850e-47 |
| Msa0607410 | Msa0964150 | 0.806060 | 9.880097e-50 | -8.615850e-47 |
| Msa0607410 | Msa0984820 | 0.847083 | 1.447163e-59 | -8.615850e-47 |
| Msa0607410 | Msa0984830 | 0.814292 | 1.659306e-51 | -8.615850e-47 |
| Msa0607410 | Msa0984840 | 0.828553 | 8.433337e-55 | -8.615850e-47 |
| Msa0607410 | Msa0985040 | 0.824048 | 9.966425e-54 | -8.615850e-47 |
| Msa0607410 | Msa0986870 | 0.802628 | 5.125537e-49 | -8.615850e-47 |
| Msa0607410 | Msa1005490 | 0.804132 | 2.501269e-49 | -8.615850e-47 |
| Msa0607410 | Msa1006460 | 0.804111 | 2.526382e-49 | -8.615850e-47 |
| Msa0607410 | Msa1008960 | 0.829790 | 4.226961e-55 | -8.615850e-47 |
| Msa0607410 | Msa1009150 | 0.826820 | 2.199444e-54 | -8.615850e-47 |
| Msa0607410 | Msa1009170 | 0.830912 | 2.247932e-55 | -8.615850e-47 |
| Msa0607410 | Msa1031220 | 0.818916 | 1.527040e-52 | -8.615850e-47 |
| Msa0607410 | Msa1033670 | 0.812597 | 3.914331e-51 | -8.615850e-47 |
| Msa0607410 | Msa1043020 | 0.806093 | 9.724148e-50 | -8.615850e-47 |
| Msa0607410 | Msa1050320 | 0.844209 | 8.710591e-59 | -8.615850e-47 |
| Msa0607410 | Msa1052030 | 0.824497 | 7.818838e-54 | -8.615850e-47 |
| Msa0607410 | Msa1052080 | 0.813690 | 2.252358e-51 | -8.615850e-47 |
| Msa0607410 | Msa1089130 | 0.816475 | 5.424757e-52 | -8.615850e-47 |
| Msa0607410 | Msa1096520 | 0.809612 | 1.736359e-50 | -8.615850e-47 |
| Msa0607410 | Msa1096570 | 0.809878 | 1.521756e-50 | -8.615850e-47 |
| Msa0607410 | Msa1098350 | 0.817114 | 3.900957e-52 | -8.615850e-47 |
| Msa0607410 | Msa1098380 | 0.803962 | 2.713528e-49 | -8.615850e-47 |
| Msa0607410 | Msa1113210 | 0.824154 | 9.411538e-54 | -8.615850e-47 |
| Msa0607410 | Msa1113280 | 0.801137 | 1.037730e-48 | -8.615850e-47 |
| Msa0607410 | Msa1138450 | 0.808232 | 3.425938e-50 | -8.615850e-47 |
| Msa0607410 | Msa1138480 | 0.841095 | 5.848851e-58 | -8.615850e-47 |
| Msa0607410 | Msa1138490 | 0.814576 | 1.435706e-51 | -8.615850e-47 |
| Msa0607410 | Msa1140460 | 0.816895 | 4.367052e-52 | -8.615850e-47 |
| Msa0607410 | Msa1175850 | 0.802669 | 5.027844e-49 | -8.615850e-47 |
| Msa0607410 | Msa1182400 | 0.814056 | 1.871357e-51 | -8.615850e-47 |
| Msa0607410 | Msa1182780 | 0.804983 | 1.662262e-49 | -8.615850e-47 |
| Msa0607410 | Msa1199750 | 0.840246 | 9.760598e-58 | -8.615850e-47 |
| Msa0607410 | Msa1204470 | 0.821751 | 3.418098e-53 | -8.615850e-47 |
| Msa0607410 | Msa1204710 | 0.804185 | 2.439288e-49 | -8.615850e-47 |
| Msa0607410 | Msa1207760 | 0.810092 | 1.368731e-50 | -8.615850e-47 |
| Msa0607410 | Msa1208250 | 0.818799 | 1.623141e-52 | -8.615850e-47 |
| Msa0607410 | Msa1216700 | 0.800150 | 1.649581e-48 | -8.615850e-47 |
| Msa0607410 | Msa1223510 | 0.815182 | 1.054145e-51 | -8.615850e-47 |
| Msa0607410 | Msa1228280 | 0.816992 | 4.154128e-52 | -8.615850e-47 |
| Msa0607410 | Msa1228330 | 0.811217 | 7.820021e-51 | -8.615850e-47 |
| Msa0607410 | Msa1235940 | 0.827313 | 1.676544e-54 | -8.615850e-47 |
| Msa0607410 | Msa1247720 | 0.820899 | 5.375067e-53 | -8.615850e-47 |
| Msa0607410 | Msa1256430 | 0.817541 | 3.125320e-52 | -8.615850e-47 |
| Msa0607410 | Msa1277580 | 0.830438 | 2.936622e-55 | -8.615850e-47 |
| Msa0607410 | Msa1279310 | 0.859955 | 2.889615e-63 | -8.615850e-47 |
| Msa0607410 | Msa1279320 | 0.844370 | 7.883150e-59 | -8.615850e-47 |
| Msa0607410 | Msa1297540 | 0.805040 | 1.617279e-49 | -8.615850e-47 |
| Msa0607410 | Msa1308460 | 0.810993 | 8.745280e-51 | -8.615850e-47 |
| Msa0607410 | Msa1328600 | 0.828923 | 6.861763e-55 | -8.615850e-47 |
| Msa0607410 | Msa1339310 | 0.808562 | 2.914123e-50 | -8.615850e-47 |
| Msa0607410 | Msa1354210 | 0.807766 | 4.305681e-50 | -8.615850e-47 |
| Msa0607410 | Msa1357380 | 0.821155 | 4.693612e-53 | -8.615850e-47 |
| Msa0607410 | Msa1366700 | 0.821156 | 4.688890e-53 | -8.615850e-47 |
| Msa0607410 | Msa1368660 | 0.832215 | 1.073660e-55 | -8.615850e-47 |
| Msa0607410 | Msa1386020 | 0.823640 | 1.242443e-53 | -8.615850e-47 |
| Msa0607410 | Msa1391600 | 0.800771 | 1.232469e-48 | -8.615850e-47 |
| Msa0607410 | Msa1396820 | 0.806926 | 6.489776e-50 | -8.615850e-47 |
| Msa0607410 | Msa1408900 | 0.824695 | 7.023255e-54 | -8.615850e-47 |
| Msa0607410 | Msa1412280 | 0.804268 | 2.343371e-49 | -8.615850e-47 |
| Msa0607410 | Msa1432250 | 0.801167 | 1.023309e-48 | -8.615850e-47 |
| Msa0607410 | Msa1433380 | 0.817201 | 3.728950e-52 | -8.615850e-47 |
| Msa0607410 | Msa1443440 | 0.842163 | 3.058834e-58 | -8.615850e-47 |
| Msa0607410 | Msa1445250 | 0.808271 | 3.361328e-50 | -8.615850e-47 |
| Msa0607410 | Msa1446220 | 0.841699 | 4.056262e-58 | -8.615850e-47 |
| Msa0607410 | Msa1459170 | 0.809624 | 1.726323e-50 | -8.615850e-47 |
| Msa0607410 | Msa1459630 | 0.833290 | 5.805270e-56 | -8.615850e-47 |
| Msa0147800 | Msa0607410 | 0.849390 | 3.333709e-60 | -8.615850e-47 |
| Msa0148430 | Msa0607410 | 0.809302 | 2.024132e-50 | -8.615850e-47 |
| Msa0160650 | Msa0607410 | 0.809124 | 2.209313e-50 | -8.615850e-47 |
| Msa0164630 | Msa0607410 | 0.803616 | 3.202621e-49 | -8.615850e-47 |
| Msa0166580 | Msa0607410 | 0.843796 | 1.124355e-58 | -8.615850e-47 |
| Msa0184030 | Msa0607410 | 0.830352 | 3.082020e-55 | -8.615850e-47 |
| Msa0194870 | Msa0607410 | 0.811352 | 7.307316e-51 | -8.615850e-47 |
| Msa0194900 | Msa0607410 | 0.809191 | 2.137800e-50 | -8.615850e-47 |
| Msa0206600 | Msa0607410 | 0.805426 | 1.342909e-49 | -8.615850e-47 |
| Msa0210870 | Msa0607410 | 0.800456 | 1.428928e-48 | -8.615850e-47 |
| Msa0218430 | Msa0607410 | 0.815070 | 1.116001e-51 | -8.615850e-47 |
| Msa0232860 | Msa0607410 | 0.828962 | 6.715484e-55 | -8.615850e-47 |
| Msa0367310 | Msa0607410 | 0.815546 | 8.748967e-52 | -8.615850e-47 |
| Msa0372990 | Msa0607410 | 0.806609 | 7.570799e-50 | -8.615850e-47 |
| Msa0389050 | Msa0607410 | 0.806817 | 6.842950e-50 | -8.615850e-47 |
| Msa0408160 | Msa0607410 | 0.839487 | 1.538334e-57 | -8.615850e-47 |
| Msa0409000 | Msa0607410 | 0.804453 | 2.144152e-49 | -8.615850e-47 |
| Msa0410960 | Msa0607410 | 0.820638 | 6.170962e-53 | -8.615850e-47 |
| Msa0421390 | Msa0607410 | 0.817819 | 2.706067e-52 | -8.615850e-47 |
| Msa0431940 | Msa0607410 | 0.834387 | 3.087177e-56 | -8.615850e-47 |
| Msa0444310 | Msa0607410 | 0.816883 | 4.394073e-52 | -8.615850e-47 |
| Msa0452010 | Msa0607410 | 0.844561 | 7.003914e-59 | -8.615850e-47 |
| Msa0452180 | Msa0607410 | 0.808382 | 3.183662e-50 | -8.615850e-47 |
| Msa0481320 | Msa0607410 | 0.826524 | 2.587244e-54 | -8.615850e-47 |
| Msa0239610 | Msa0607410 | 0.826129 | 3.213879e-54 | -8.615850e-47 |
| Msa0272420 | Msa0607410 | 0.824089 | 9.747798e-54 | -8.615850e-47 |
| Msa0312570 | Msa0607410 | 0.805705 | 1.173587e-49 | -8.615850e-47 |
| Msa0315390 | Msa0607410 | 0.800543 | 1.372190e-48 | -8.615850e-47 |
| Msa0328840 | Msa0607410 | 0.809013 | 2.333269e-50 | -8.615850e-47 |
| Msa0339340 | Msa0607410 | 0.805131 | 1.548010e-49 | -8.615850e-47 |
| Msa0340530 | Msa0607410 | 0.802593 | 5.212137e-49 | -8.615850e-47 |
| Msa0486870 | Msa0607410 | 0.803811 | 2.917590e-49 | -8.615850e-47 |
| Msa0492050 | Msa0607410 | 0.809707 | 1.656099e-50 | -8.615850e-47 |
| Msa0503620 | Msa0607410 | 0.818345 | 2.057541e-52 | -8.615850e-47 |
| Msa0520810 | Msa0607410 | 0.839666 | 1.382721e-57 | -8.615850e-47 |
| Msa0543310 | Msa0607410 | 0.805249 | 1.462452e-49 | -8.615850e-47 |
| Msa0553280 | Msa0607410 | 0.878348 | 3.020132e-69 | -8.615850e-47 |
| Msa0553290 | Msa0607410 | 0.881985 | 1.522036e-70 | -8.615850e-47 |
| Msa0553570 | Msa0607410 | 0.805843 | 1.097647e-49 | -8.615850e-47 |
| Msa0555510 | Msa0607410 | 0.817158 | 3.811632e-52 | -8.615850e-47 |
| Msa0566010 | Msa0607410 | 0.809808 | 1.575658e-50 | -8.615850e-47 |
| Msa0599250 | Msa0607410 | 0.800422 | 1.452232e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607410 | MtrunA17_Chr4g0038981 | 96.452 | 310 | 11 | 0 | 3 | 312 | 20 | 329 | 0.0 | 611 |
| Msa0607410 | MtrunA17_Chr4g0039011 | 86.645 | 307 | 40 | 1 | 5 | 310 | 41 | 347 | 0.0 | 551 |
| Msa0607410 | MtrunA17_Chr4g0038961 | 85.806 | 310 | 44 | 0 | 3 | 312 | 20 | 329 | 0.0 | 550 |
| Msa0607410 | MtrunA17_Chr4g0038971 | 83.871 | 310 | 50 | 0 | 3 | 312 | 20 | 329 | 0.0 | 549 |
| Msa0607410 | MtrunA17_Chr4g0038941 | 71.290 | 310 | 87 | 2 | 4 | 312 | 50 | 358 | 1.15e-158 | 447 |
| Msa0607410 | MtrunA17_Chr4g0039021 | 63.481 | 293 | 101 | 5 | 26 | 312 | 1 | 293 | 6.12e-126 | 361 |
| Msa0607410 | MtrunA17_Chr4g0039071 | 57.051 | 312 | 127 | 4 | 4 | 308 | 23 | 334 | 9.42e-126 | 364 |
| Msa0607410 | MtrunA17_Chr2g0294601 | 55.414 | 314 | 131 | 4 | 6 | 311 | 59 | 371 | 3.11e-117 | 343 |
| Msa0607410 | MtrunA17_Chr2g0294591 | 52.866 | 314 | 139 | 4 | 6 | 311 | 30 | 342 | 4.88e-109 | 321 |
| Msa0607410 | MtrunA17_Chr1g0174261 | 55.789 | 285 | 115 | 5 | 35 | 310 | 1 | 283 | 4.10e-104 | 308 |
| Msa0607410 | MtrunA17_Chr7g0250301 | 44.194 | 310 | 162 | 8 | 6 | 307 | 8 | 314 | 2.39e-82 | 251 |
| Msa0607410 | MtrunA17_Chr5g0439251 | 42.271 | 317 | 167 | 8 | 6 | 307 | 25 | 340 | 8.68e-79 | 248 |
| Msa0607410 | MtrunA17_Chr3g0119541 | 41.121 | 321 | 175 | 8 | 5 | 311 | 25 | 345 | 2.18e-76 | 238 |
| Msa0607410 | MtrunA17_Chr4g0026321 | 38.486 | 317 | 180 | 6 | 5 | 307 | 28 | 343 | 2.01e-72 | 228 |
| Msa0607410 | MtrunA17_Chr2g0321511 | 37.654 | 324 | 183 | 7 | 1 | 307 | 20 | 341 | 5.62e-72 | 227 |
| Msa0607410 | MtrunA17_Chr8g0389741 | 36.364 | 319 | 190 | 6 | 6 | 311 | 28 | 346 | 4.28e-71 | 228 |
| Msa0607410 | MtrunA17_Chr4g0003281 | 38.580 | 324 | 185 | 6 | 2 | 311 | 36 | 359 | 1.47e-70 | 224 |
| Msa0607410 | MtrunA17_Chr4g0034901 | 39.130 | 322 | 180 | 7 | 6 | 312 | 29 | 349 | 7.24e-70 | 224 |
| Msa0607410 | MtrunA17_Chr4g0043851 | 39.308 | 318 | 180 | 7 | 3 | 307 | 29 | 346 | 3.24e-69 | 220 |
| Msa0607410 | MtrunA17_Chr6g0487261 | 35.423 | 319 | 193 | 6 | 6 | 311 | 27 | 345 | 3.72e-68 | 221 |
| Msa0607410 | MtrunA17_Chr1g0177171 | 38.801 | 317 | 180 | 7 | 5 | 307 | 37 | 353 | 5.10e-68 | 220 |
| Msa0607410 | MtrunA17_Chr1g0146831 | 38.629 | 321 | 176 | 9 | 3 | 307 | 28 | 343 | 5.30e-68 | 216 |
| Msa0607410 | MtrunA17_Chr1g0189111 | 38.750 | 320 | 184 | 8 | 5 | 312 | 30 | 349 | 6.53e-68 | 218 |
| Msa0607410 | MtrunA17_Chr4g0064021 | 35.385 | 325 | 196 | 7 | 2 | 312 | 22 | 346 | 1.18e-67 | 216 |
| Msa0607410 | MtrunA17_Chr7g0250321 | 43.511 | 262 | 141 | 5 | 4 | 260 | 26 | 285 | 1.99e-67 | 212 |
| Msa0607410 | MtrunA17_Chr3g0144531 | 37.855 | 317 | 181 | 7 | 6 | 307 | 28 | 343 | 1.84e-66 | 215 |
| Msa0607410 | MtrunA17_Chr1g0155001 | 38.801 | 317 | 179 | 8 | 6 | 307 | 24 | 340 | 3.04e-66 | 213 |
| Msa0607410 | MtrunA17_Chr7g0234821 | 36.025 | 322 | 181 | 11 | 7 | 307 | 27 | 344 | 7.98e-63 | 206 |
| Msa0607410 | MtrunA17_Chr1g0161011 | 37.097 | 310 | 179 | 6 | 6 | 299 | 24 | 333 | 2.08e-62 | 205 |
| Msa0607410 | MtrunA17_Chr2g0285901 | 37.898 | 314 | 181 | 7 | 7 | 307 | 25 | 337 | 1.03e-61 | 201 |
| Msa0607410 | MtrunA17_Chr7g0223961 | 36.760 | 321 | 184 | 10 | 3 | 309 | 20 | 335 | 1.44e-61 | 202 |
| Msa0607410 | MtrunA17_Chr8g0339191 | 35.202 | 321 | 187 | 9 | 7 | 308 | 30 | 348 | 1.57e-60 | 199 |
| Msa0607410 | MtrunA17_Chr3g0110371 | 36.656 | 311 | 181 | 6 | 6 | 300 | 24 | 334 | 1.85e-60 | 200 |
| Msa0607410 | MtrunA17_Chr5g0434591 | 35.370 | 311 | 185 | 6 | 6 | 300 | 23 | 333 | 3.36e-59 | 197 |
| Msa0607410 | MtrunA17_Chr4g0046311 | 33.746 | 323 | 191 | 9 | 6 | 307 | 23 | 343 | 1.66e-57 | 192 |
| Msa0607410 | MtrunA17_Chr7g0253091 | 34.783 | 322 | 193 | 8 | 2 | 307 | 22 | 342 | 6.16e-57 | 191 |
| Msa0607410 | MtrunA17_Chr8g0383311 | 33.846 | 325 | 199 | 8 | 3 | 312 | 40 | 363 | 5.69e-56 | 189 |
| Msa0607410 | MtrunA17_Chr3g0121271 | 33.333 | 324 | 199 | 7 | 6 | 312 | 26 | 349 | 9.74e-56 | 188 |
| Msa0607410 | MtrunA17_Chr6g0461601 | 33.951 | 324 | 195 | 8 | 2 | 307 | 22 | 344 | 2.86e-55 | 186 |
| Msa0607410 | MtrunA17_Chr4g0062771 | 34.557 | 327 | 182 | 10 | 6 | 308 | 31 | 349 | 5.56e-53 | 181 |
| Msa0607410 | MtrunA17_Chr4g0075031 | 33.019 | 318 | 197 | 6 | 6 | 307 | 45 | 362 | 2.51e-52 | 179 |
| Msa0607410 | MtrunA17_Chr8g0378621 | 31.056 | 322 | 206 | 6 | 6 | 311 | 26 | 347 | 1.29e-49 | 172 |
| Msa0607410 | MtrunA17_Chr3g0129341 | 32.615 | 325 | 201 | 10 | 3 | 312 | 31 | 352 | 1.55e-48 | 169 |
| Msa0607410 | MtrunA17_Chr4g0069801 | 31.629 | 313 | 198 | 8 | 10 | 307 | 32 | 343 | 1.90e-47 | 166 |
| Msa0607410 | MtrunA17_Chr4g0043511 | 34.069 | 317 | 191 | 10 | 6 | 307 | 62 | 375 | 3.32e-47 | 166 |
| Msa0607410 | MtrunA17_Chr3g0105981 | 32.915 | 319 | 198 | 11 | 4 | 308 | 25 | 341 | 7.26e-47 | 163 |
| Msa0607410 | MtrunA17_Chr2g0290821 | 32.609 | 322 | 195 | 10 | 5 | 307 | 27 | 345 | 5.39e-46 | 162 |
| Msa0607410 | MtrunA17_Chr3g0138741 | 33.230 | 322 | 197 | 10 | 3 | 308 | 28 | 347 | 1.12e-44 | 158 |
| Msa0607410 | MtrunA17_Chr2g0306311 | 30.259 | 347 | 196 | 10 | 6 | 308 | 30 | 374 | 2.87e-44 | 157 |
| Msa0607410 | MtrunA17_Chr1g0148391 | 32.508 | 323 | 202 | 8 | 3 | 310 | 23 | 344 | 3.94e-43 | 154 |
| Msa0607410 | MtrunA17_Chr4g0076581 | 32.087 | 321 | 196 | 11 | 5 | 307 | 32 | 348 | 4.90e-42 | 151 |
| Msa0607410 | MtrunA17_Chr2g0294581 | 42.857 | 175 | 85 | 5 | 6 | 173 | 76 | 242 | 1.52e-34 | 127 |
| Msa0607410 | MtrunA17_Chr2g0294581 | 52.525 | 99 | 44 | 3 | 215 | 311 | 187 | 284 | 3.54e-26 | 104 |
| Msa0607410 | MtrunA17_Chr5g0436361 | 29.210 | 291 | 186 | 11 | 32 | 307 | 63 | 348 | 6.28e-32 | 122 |
| Msa0607410 | MtrunA17_Chr4g0018861 | 61.364 | 88 | 33 | 1 | 224 | 310 | 87 | 174 | 1.59e-31 | 117 |
| Msa0607410 | MtrunA17_Chr4g0018861 | 53.731 | 67 | 31 | 0 | 4 | 70 | 20 | 86 | 1.23e-20 | 88.6 |
| Msa0607410 | MtrunA17_Chr4g0018771 | 58.242 | 91 | 37 | 1 | 221 | 310 | 86 | 176 | 2.80e-31 | 117 |
| Msa0607410 | MtrunA17_Chr4g0018771 | 52.857 | 70 | 33 | 0 | 4 | 73 | 24 | 93 | 4.71e-20 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607410 | AT4G16260.1 | 51.111 | 315 | 145 | 5 | 4 | 311 | 22 | 334 | 2.90e-111 | 326 |
| Msa0607410 | AT3G57260.1 | 53.674 | 313 | 134 | 7 | 6 | 312 | 32 | 339 | 6.61e-110 | 323 |
| Msa0607410 | AT3G57260.2 | 53.674 | 313 | 134 | 7 | 6 | 312 | 48 | 355 | 1.45e-109 | 322 |
| Msa0607410 | AT3G57270.1 | 51.118 | 313 | 146 | 4 | 6 | 311 | 27 | 339 | 1.95e-106 | 314 |
| Msa0607410 | AT4G16260.2 | 50.163 | 307 | 144 | 5 | 12 | 311 | 1 | 305 | 7.29e-105 | 309 |
| Msa0607410 | AT3G57240.1 | 50.629 | 318 | 141 | 7 | 3 | 312 | 32 | 341 | 6.97e-104 | 307 |
| Msa0607410 | AT5G20390.1 | 42.345 | 307 | 163 | 9 | 5 | 301 | 32 | 334 | 3.25e-77 | 239 |
| Msa0607410 | AT4G26830.1 | 40.439 | 319 | 177 | 6 | 6 | 311 | 25 | 343 | 4.59e-76 | 240 |
| Msa0607410 | AT4G26830.2 | 40.439 | 319 | 177 | 6 | 6 | 311 | 29 | 347 | 4.73e-76 | 240 |
| Msa0607410 | AT5G56590.1 | 38.006 | 321 | 184 | 6 | 6 | 311 | 26 | 346 | 1.00e-75 | 241 |
| Msa0607410 | AT5G20340.1 | 41.234 | 308 | 167 | 9 | 5 | 302 | 42 | 345 | 2.28e-75 | 235 |
| Msa0607410 | AT2G05790.1 | 39.564 | 321 | 180 | 7 | 5 | 311 | 24 | 344 | 3.14e-74 | 236 |
| Msa0607410 | AT1G77790.1 | 39.744 | 312 | 174 | 8 | 7 | 307 | 31 | 339 | 7.75e-73 | 228 |
| Msa0607410 | AT5G55180.2 | 38.941 | 321 | 182 | 8 | 6 | 312 | 27 | 347 | 1.87e-72 | 231 |
| Msa0607410 | AT5G55180.1 | 38.941 | 321 | 182 | 8 | 6 | 312 | 27 | 347 | 2.11e-72 | 231 |
| Msa0607410 | AT2G16230.1 | 40.823 | 316 | 173 | 7 | 6 | 307 | 25 | 340 | 2.14e-72 | 232 |
| Msa0607410 | AT5G20330.1 | 40.717 | 307 | 168 | 9 | 5 | 301 | 33 | 335 | 3.80e-72 | 226 |
| Msa0607410 | AT4G18340.2 | 38.700 | 323 | 185 | 6 | 3 | 312 | 31 | 353 | 2.14e-71 | 226 |
| Msa0607410 | AT4G18340.1 | 38.700 | 323 | 185 | 6 | 3 | 312 | 31 | 353 | 3.17e-71 | 226 |
| Msa0607410 | AT5G42100.1 | 40.867 | 323 | 175 | 7 | 1 | 307 | 22 | 344 | 1.64e-70 | 225 |
| Msa0607410 | AT5G42100.2 | 40.867 | 323 | 175 | 7 | 1 | 307 | 22 | 344 | 1.73e-70 | 224 |
| Msa0607410 | AT1G32860.1 | 37.578 | 322 | 186 | 7 | 5 | 311 | 28 | 349 | 7.80e-70 | 223 |
| Msa0607410 | AT1G33220.1 | 39.869 | 306 | 170 | 9 | 5 | 299 | 33 | 335 | 5.57e-69 | 218 |
| Msa0607410 | AT2G01630.2 | 39.355 | 310 | 172 | 7 | 6 | 299 | 23 | 332 | 6.63e-68 | 217 |
| Msa0607410 | AT2G01630.3 | 39.355 | 310 | 172 | 7 | 6 | 299 | 23 | 332 | 3.08e-67 | 217 |
| Msa0607410 | AT2G26600.1 | 34.462 | 325 | 199 | 8 | 2 | 312 | 30 | 354 | 4.01e-67 | 215 |
| Msa0607410 | AT2G27500.2 | 36.164 | 318 | 189 | 8 | 4 | 307 | 27 | 344 | 4.07e-67 | 214 |
| Msa0607410 | AT5G42720.1 | 39.117 | 317 | 178 | 8 | 6 | 307 | 26 | 342 | 4.71e-67 | 216 |
| Msa0607410 | AT2G27500.1 | 36.164 | 318 | 189 | 8 | 4 | 307 | 27 | 344 | 8.58e-67 | 214 |
| Msa0607410 | AT1G30080.2 | 37.736 | 318 | 185 | 7 | 3 | 307 | 33 | 350 | 1.31e-66 | 214 |
| Msa0607410 | AT2G01630.1 | 39.355 | 310 | 172 | 7 | 6 | 299 | 23 | 332 | 1.36e-66 | 217 |
| Msa0607410 | AT4G34480.2 | 40.823 | 316 | 173 | 7 | 6 | 307 | 26 | 341 | 1.48e-66 | 213 |
| Msa0607410 | AT1G30080.1 | 37.736 | 318 | 185 | 7 | 3 | 307 | 33 | 350 | 1.50e-66 | 214 |
| Msa0607410 | AT4G34480.1 | 40.823 | 316 | 173 | 7 | 6 | 307 | 26 | 341 | 1.29e-64 | 212 |
| Msa0607410 | AT5G24318.4 | 36.991 | 319 | 180 | 9 | 5 | 307 | 29 | 342 | 3.52e-64 | 207 |
| Msa0607410 | AT1G77780.1 | 36.452 | 310 | 184 | 9 | 7 | 307 | 25 | 330 | 7.99e-64 | 206 |
| Msa0607410 | AT3G15800.1 | 35.826 | 321 | 191 | 7 | 2 | 307 | 39 | 359 | 1.01e-63 | 206 |
| Msa0607410 | AT5G24318.2 | 36.991 | 319 | 180 | 9 | 5 | 307 | 29 | 342 | 8.97e-63 | 206 |
| Msa0607410 | AT5G24318.1 | 36.991 | 319 | 180 | 9 | 5 | 307 | 29 | 342 | 1.23e-62 | 205 |
| Msa0607410 | AT3G61810.1 | 33.851 | 322 | 194 | 6 | 6 | 312 | 55 | 372 | 2.06e-61 | 200 |
| Msa0607410 | AT3G07320.1 | 33.951 | 324 | 195 | 8 | 2 | 307 | 21 | 343 | 2.07e-59 | 197 |
| Msa0607410 | AT5G20560.1 | 35.621 | 306 | 184 | 8 | 6 | 301 | 34 | 336 | 2.33e-59 | 193 |
| Msa0607410 | AT4G29360.1 | 35.110 | 319 | 194 | 6 | 6 | 311 | 27 | 345 | 4.14e-58 | 195 |
| Msa0607410 | AT4G29360.2 | 35.110 | 319 | 194 | 6 | 6 | 311 | 37 | 355 | 5.39e-58 | 195 |
| Msa0607410 | AT1G66250.1 | 35.849 | 318 | 187 | 7 | 6 | 307 | 32 | 348 | 8.60e-58 | 194 |
| Msa0607410 | AT4G14080.1 | 33.642 | 324 | 195 | 9 | 6 | 311 | 42 | 363 | 7.10e-56 | 188 |
| Msa0607410 | AT3G23770.1 | 34.462 | 325 | 194 | 9 | 6 | 311 | 37 | 361 | 3.01e-55 | 186 |
| Msa0607410 | AT2G27500.3 | 37.549 | 253 | 145 | 7 | 68 | 307 | 14 | 266 | 2.81e-54 | 179 |
| Msa0607410 | AT5G18220.1 | 32.915 | 319 | 198 | 7 | 3 | 307 | 27 | 343 | 7.81e-54 | 183 |
| Msa0607410 | AT2G19440.2 | 33.540 | 322 | 198 | 8 | 1 | 307 | 16 | 336 | 3.27e-53 | 181 |
| Msa0607410 | AT2G19440.1 | 33.540 | 322 | 198 | 8 | 1 | 307 | 16 | 336 | 3.27e-53 | 181 |
| Msa0607410 | AT2G26600.2 | 34.884 | 258 | 155 | 7 | 68 | 312 | 3 | 260 | 4.33e-53 | 176 |
| Msa0607410 | AT1G11820.1 | 31.935 | 310 | 195 | 6 | 6 | 299 | 44 | 353 | 8.41e-53 | 178 |
| Msa0607410 | AT3G13560.4 | 32.075 | 318 | 200 | 6 | 6 | 307 | 26 | 343 | 1.46e-52 | 180 |
| Msa0607410 | AT3G13560.1 | 32.075 | 318 | 200 | 6 | 6 | 307 | 26 | 343 | 1.46e-52 | 180 |
| Msa0607410 | AT3G13560.2 | 32.075 | 318 | 200 | 6 | 6 | 307 | 26 | 343 | 1.46e-52 | 180 |
| Msa0607410 | AT3G13560.5 | 32.075 | 318 | 200 | 6 | 6 | 307 | 26 | 343 | 1.46e-52 | 180 |
| Msa0607410 | AT3G13560.3 | 32.075 | 318 | 200 | 6 | 6 | 307 | 26 | 343 | 1.46e-52 | 180 |
| Msa0607410 | AT1G11820.3 | 31.935 | 310 | 195 | 6 | 6 | 299 | 44 | 353 | 1.15e-51 | 177 |
| Msa0607410 | AT1G11820.2 | 31.935 | 310 | 195 | 6 | 6 | 299 | 44 | 353 | 2.78e-51 | 177 |
| Msa0607410 | AT1G64760.1 | 32.919 | 322 | 200 | 8 | 1 | 307 | 20 | 340 | 3.99e-51 | 176 |
| Msa0607410 | AT1G64760.2 | 32.919 | 322 | 200 | 8 | 1 | 307 | 20 | 340 | 3.99e-51 | 176 |
| Msa0607410 | AT5G58480.1 | 33.742 | 326 | 198 | 11 | 3 | 312 | 23 | 346 | 1.54e-50 | 174 |
| Msa0607410 | AT5G58090.1 | 33.962 | 318 | 194 | 9 | 5 | 307 | 21 | 337 | 3.60e-50 | 173 |
| Msa0607410 | AT3G55430.1 | 33.438 | 320 | 192 | 11 | 3 | 307 | 26 | 339 | 1.39e-48 | 168 |
| Msa0607410 | AT3G46570.1 | 34.688 | 320 | 185 | 12 | 6 | 307 | 27 | 340 | 1.50e-48 | 166 |
| Msa0607410 | AT3G04010.1 | 31.902 | 326 | 202 | 9 | 3 | 311 | 30 | 352 | 6.11e-48 | 167 |
| Msa0607410 | AT4G31140.1 | 32.716 | 324 | 202 | 9 | 3 | 311 | 24 | 346 | 2.89e-47 | 166 |
| Msa0607410 | AT2G39640.1 | 33.758 | 314 | 191 | 10 | 5 | 307 | 29 | 336 | 6.30e-47 | 166 |
| Msa0607410 | AT3G24330.1 | 32.609 | 322 | 195 | 11 | 6 | 308 | 39 | 357 | 9.41e-47 | 164 |
| Msa0607410 | AT5G64790.1 | 30.462 | 325 | 210 | 8 | 2 | 311 | 24 | 347 | 2.42e-44 | 158 |
| Msa0607410 | AT4G34480.3 | 42.982 | 228 | 117 | 6 | 93 | 307 | 3 | 230 | 4.26e-44 | 155 |
| Msa0607410 | AT4G17180.1 | 31.348 | 319 | 198 | 9 | 5 | 308 | 24 | 336 | 6.01e-44 | 156 |
| Msa0607410 | AT5G24318.3 | 39.904 | 208 | 107 | 7 | 113 | 307 | 1 | 203 | 4.16e-41 | 145 |
| Msa0607410 | AT5G20870.1 | 30.990 | 313 | 189 | 11 | 23 | 311 | 47 | 356 | 2.10e-40 | 147 |
| Msa0607410 | AT3G55780.1 | 27.564 | 312 | 203 | 11 | 19 | 312 | 48 | 354 | 8.91e-35 | 130 |
Find 81 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTATGTTGGAACCTTTA+AGG | 0.089668 | 4_2:-54201800 | None:intergenic |
| CAAGCCCTTCAAGCCCTTAA+AGG | 0.219614 | 4_2:+54201786 | Msa0607410:CDS |
| GCTTGAAGGGCTTGTTCGTC+TGG | 0.228164 | 4_2:-54201777 | None:intergenic |
| TTCTTTAGGAAGTCTATTAT+TGG | 0.255166 | 4_2:-54202140 | None:intergenic |
| ATGCCAATCAAGCTACAAAT+TGG | 0.258407 | 4_2:+54201865 | Msa0607410:CDS |
| GCAGCAACCGAACAACATTT+TGG | 0.258550 | 4_2:+54202527 | Msa0607410:CDS |
| TTCTATGTTGGAACCTTTAA+GGG | 0.304709 | 4_2:-54201799 | None:intergenic |
| CATGGCAGTGGCAATGTATT+GGG | 0.316261 | 4_2:-54201976 | None:intergenic |
| TCCACAACTTCTTGACTTGA+TGG | 0.320456 | 4_2:-54201711 | None:intergenic |
| CCGCATATACCGAGTCTAAC+TGG | 0.321766 | 4_2:-54202298 | None:intergenic |
| CATAGGGTGTCACATACTTT+TGG | 0.328516 | 4_2:-54201890 | None:intergenic |
| TCAATAGCTCCGGGTCTCTT+AGG | 0.330851 | 4_2:-54202461 | None:intergenic |
| TATTGGGCTTCATTGTCATT+AGG | 0.337583 | 4_2:-54201960 | None:intergenic |
| ACTGGGCATCAAAGAGGTTT+TGG | 0.338461 | 4_2:-54202280 | None:intergenic |
| GACCCAATTTGTAGCTTGAT+TGG | 0.339546 | 4_2:-54201868 | None:intergenic |
| GTGGTGCTCCATTGTTCTTT+AGG | 0.350917 | 4_2:-54202154 | None:intergenic |
| TATCCGTACTTCGCTTATAT+CGG | 0.370137 | 4_2:+54202191 | Msa0607410:CDS |
| TTGCTGTTGAGACCTTGATT+TGG | 0.384562 | 4_2:-54202040 | None:intergenic |
| GCATGGCAGTGGCAATGTAT+TGG | 0.397820 | 4_2:-54201977 | None:intergenic |
| ATGCGGCTCTTGAGAAAGTT+GGG | 0.402933 | 4_2:+54202315 | Msa0607410:CDS |
| CTTGAAGGGCTTGTTCGTCT+GGG | 0.403107 | 4_2:-54201776 | None:intergenic |
| GTCAGTGAAAACACCATCAT+TGG | 0.415151 | 4_2:-54202096 | None:intergenic |
| AAAGAGACCAAAATGTTGTT+CGG | 0.442878 | 4_2:-54202534 | None:intergenic |
| TTGATCAATCACGTCAAGAA+TGG | 0.444453 | 4_2:+54202434 | Msa0607410:CDS |
| TGGAACCTTTAAGGGCTTGA+AGG | 0.446944 | 4_2:-54201791 | None:intergenic |
| ATTTCATCTGCAAGTTTACA+AGG | 0.456121 | 4_2:+54202017 | Msa0607410:CDS |
| TGATATTTAGATGATTTGTC+AGG | 0.458349 | 4_2:-54202560 | None:intergenic |
| CAAGTAAGTCTCAATAGCTC+CGG | 0.465955 | 4_2:-54202471 | None:intergenic |
| GAGAGAAGAAAGGGTTTCCT+TGG | 0.473937 | 4_2:-54201838 | None:intergenic |
| TATGCGGCTCTTGAGAAAGT+TGG | 0.477765 | 4_2:+54202314 | Msa0607410:CDS |
| GTGGATTTATACAAGTCAAA+TGG | 0.478333 | 4_2:+54201729 | Msa0607410:CDS |
| TGATCAATCACGTCAAGAAT+GGG | 0.496832 | 4_2:+54202435 | Msa0607410:CDS |
| AACAAGGAAACAATGAGGTT+GGG | 0.499103 | 4_2:+54202255 | Msa0607410:CDS |
| TGCCAATCAAGCTACAAATT+GGG | 0.500599 | 4_2:+54201866 | Msa0607410:CDS |
| GGAGTTTGCTATGGAATGCT+TGG | 0.503294 | 4_2:+54201678 | Msa0607410:CDS |
| CAACAAGGAAACAATGAGGT+TGG | 0.509335 | 4_2:+54202254 | Msa0607410:CDS |
| AAAATCAAGTACATCAGTGT+TGG | 0.515246 | 4_2:+54201924 | Msa0607410:CDS |
| CGCATATACCGAGTCTAACT+GGG | 0.519959 | 4_2:-54202297 | None:intergenic |
| GGCATCTGTGAGAGAAGAAA+GGG | 0.523286 | 4_2:-54201847 | None:intergenic |
| TGGATATGAATTACCGATCA+AGG | 0.524141 | 4_2:-54202072 | None:intergenic |
| GGAACCTTTAAGGGCTTGAA+GGG | 0.527762 | 4_2:-54201790 | None:intergenic |
| GGAAATAACATGTGCACACA+TGG | 0.539256 | 4_2:-54202658 | None:intergenic |
| ACCATCAAGTCAAGAAGTTG+TGG | 0.540439 | 4_2:+54201710 | Msa0607410:CDS |
| TGGCATCTGTGAGAGAAGAA+AGG | 0.541551 | 4_2:-54201848 | None:intergenic |
| TTGAAGGGCTTGTTCGTCTG+GGG | 0.546385 | 4_2:-54201775 | None:intergenic |
| ATCAAGGATCAATTCTATGT+TGG | 0.547280 | 4_2:-54201811 | None:intergenic |
| ATCAGATGGCCATCCACTCT+CGG | 0.548201 | 4_2:-54202363 | None:intergenic |
| AATTCATATCCACCCAATGA+TGG | 0.548869 | 4_2:+54202083 | Msa0607410:CDS |
| GATCAAATTAGTATAATATG+TGG | 0.552087 | 4_2:-54202417 | None:intergenic |
| TCAGTGAAAACACCATCATT+GGG | 0.553202 | 4_2:-54202095 | None:intergenic |
| ATTGATCCTTGATGTGGCCA+AGG | 0.559139 | 4_2:+54201821 | Msa0607410:CDS |
| AAGTAAGTCTCAATAGCTCC+GGG | 0.561080 | 4_2:-54202470 | None:intergenic |
| GGGTTTCCTTGGCCACATCA+AGG | 0.566068 | 4_2:-54201827 | None:intergenic |
| GCAATTGACATGACCTTGAT+CGG | 0.567946 | 4_2:+54202059 | Msa0607410:CDS |
| TTTGATGAAAATCAGAAGAC+TGG | 0.571271 | 4_2:+54202503 | Msa0607410:CDS |
| CTTTGATGCCCAGTTAGACT+CGG | 0.571891 | 4_2:+54202289 | Msa0607410:CDS |
| TAGTTGTGTCCGAGAGTGGA+TGG | 0.576028 | 4_2:+54202354 | Msa0607410:CDS |
| AAGTTTACAAGGCCAAATCA+AGG | 0.576214 | 4_2:+54202028 | Msa0607410:CDS |
| TGCGGCTCTTGAGAAAGTTG+GGG | 0.586062 | 4_2:+54202316 | Msa0607410:CDS |
| AAGATAGTTGTGTCCGAGAG+TGG | 0.586296 | 4_2:+54202350 | Msa0607410:CDS |
| ATAGACTTCCTAAAGAACAA+TGG | 0.595560 | 4_2:+54202146 | Msa0607410:CDS |
| ACATTACATACATAGAAAGA+TGG | 0.602724 | 4_2:-54202679 | None:intergenic |
| GCACTATCTCCACCATCAGA+TGG | 0.608276 | 4_2:-54202377 | None:intergenic |
| CAATCCGTAGGAGTTTGCTA+TGG | 0.608807 | 4_2:+54201669 | Msa0607410:CDS |
| GGATACACATTGGCAAGAAG+TGG | 0.610222 | 4_2:-54202173 | None:intergenic |
| GAGAGTGGATGGCCATCTGA+TGG | 0.610447 | 4_2:+54202365 | Msa0607410:CDS |
| TAAACAACAAGGAAACAATG+AGG | 0.614647 | 4_2:+54202250 | Msa0607410:CDS |
| TACGCAGTTGTGCAATCCGT+AGG | 0.619675 | 4_2:+54201657 | Msa0607410:intron |
| CATAGAATTGATCCTTGATG+TGG | 0.622652 | 4_2:+54201815 | Msa0607410:CDS |
| CAAACTAAAATATAATGCAA+TGG | 0.623077 | 4_2:-54202751 | None:intergenic |
| AGTCTAACTGGGCATCAAAG+AGG | 0.625012 | 4_2:-54202286 | None:intergenic |
| CATTCCATAGCAAACTCCTA+CGG | 0.625812 | 4_2:-54201673 | None:intergenic |
| CCAGTTAGACTCGGTATATG+CGG | 0.629503 | 4_2:+54202298 | Msa0607410:CDS |
| TTACCGATATAAGCGAAGTA+CGG | 0.629947 | 4_2:-54202194 | None:intergenic |
| AATGGGACTCCTAAGAGACC+CGG | 0.649769 | 4_2:+54202452 | Msa0607410:CDS |
| TGTGGAAGCATTGTCAGTTG+AGG | 0.652637 | 4_2:-54202399 | None:intergenic |
| AGCGAAGTACGGATACACAT+TGG | 0.661063 | 4_2:-54202183 | None:intergenic |
| GTGAAAACACCATCATTGGG+TGG | 0.672842 | 4_2:-54202092 | None:intergenic |
| AGTGGATGGCCATCTGATGG+TGG | 0.674681 | 4_2:+54202368 | Msa0607410:CDS |
| GCGGCTCTTGAGAAAGTTGG+GGG | 0.680343 | 4_2:+54202317 | Msa0607410:CDS |
| GGACACAACTATCTTCACAT+CGG | 0.708430 | 4_2:-54202342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTTTTTTGAAGAAT+TGG | - | chr4_2:54199913-54199932 | None:intergenic | 10.0% |
| !! | TAAATCAAAAAAAAATTACA+GGG | - | chr4_2:54200957-54200976 | None:intergenic | 10.0% |
| !!! | AGTTTAAAATAAATTAAAGT+AGG | - | chr4_2:54201538-54201557 | None:intergenic | 10.0% |
| !! | AAAATTAAATCTTAGTTGAT+CGG | - | chr4_2:54199703-54199722 | None:intergenic | 15.0% |
| !! | TTTCGATATTAATTATTACT+AGG | + | chr4_2:54199720-54199739 | Msa0607410:intron | 15.0% |
| !!! | CGAATAATATAATTTGATTT+TGG | - | chr4_2:54199946-54199965 | None:intergenic | 15.0% |
| !!! | AGTTCACATTATAATATTTT+GGG | + | chr4_2:54200132-54200151 | Msa0607410:intron | 15.0% |
| !! | AAAAAATATAAAGGGTTAAT+AGG | + | chr4_2:54200892-54200911 | Msa0607410:intron | 15.0% |
| !! | AAATCAAAAAAAAATTACAG+GGG | - | chr4_2:54200956-54200975 | None:intergenic | 15.0% |
| !! | GTAAATCAAAAAAAAATTAC+AGG | - | chr4_2:54200958-54200977 | None:intergenic | 15.0% |
| !!! | AAAACAATTTTTTTTTACAG+AGG | + | chr4_2:54201085-54201104 | Msa0607410:intron | 15.0% |
| !!! | AAACAATTTTTTTTTACAGA+GGG | + | chr4_2:54201086-54201105 | Msa0607410:intron | 15.0% |
| !! | GGTAAATAAAAAAAAATTAC+AGG | + | chr4_2:54201107-54201126 | Msa0607410:intron | 15.0% |
| !! | AATAAAAAAAAATTACAGGA+AGG | + | chr4_2:54201111-54201130 | Msa0607410:intron | 15.0% |
| !! | TAAAAGTAAAAAATTGTGTT+TGG | - | chr4_2:54201432-54201451 | None:intergenic | 15.0% |
| !!! | GTTTTTATATAGTATAACAT+GGG | - | chr4_2:54201493-54201512 | None:intergenic | 15.0% |
| !!! | AGTTTTTATATAGTATAACA+TGG | - | chr4_2:54201494-54201513 | None:intergenic | 15.0% |
| !! | ATATCTTGATTTCATATTGA+TGG | + | chr4_2:54199772-54199791 | Msa0607410:intron | 20.0% |
| !! | ACAACATAAACAACAAAATA+AGG | - | chr4_2:54199850-54199869 | None:intergenic | 20.0% |
| !! | TGTGTAACTTCAATAAAATA+AGG | + | chr4_2:54200056-54200075 | Msa0607410:intron | 20.0% |
| !!! | GAGTTCACATTATAATATTT+TGG | + | chr4_2:54200131-54200150 | Msa0607410:intron | 20.0% |
| !!! | AATATTTTACTGTGTATAAG+TGG | + | chr4_2:54200316-54200335 | Msa0607410:intron | 20.0% |
| !!! | TTTGTTATTTGAACTATTTG+TGG | + | chr4_2:54200427-54200446 | Msa0607410:intron | 20.0% |
| !!! | TTGTTATTTGAACTATTTGT+GGG | + | chr4_2:54200428-54200447 | Msa0607410:intron | 20.0% |
| !! | TATTTGTAATTCTATCTACT+CGG | - | chr4_2:54200652-54200671 | None:intergenic | 20.0% |
| !! | ACTTAAAATTCTGAATATGT+AGG | + | chr4_2:54200842-54200861 | Msa0607410:intron | 20.0% |
| !! | AATCAAAAAAAAATTACAGG+GGG | - | chr4_2:54200955-54200974 | None:intergenic | 20.0% |
| !!! | TCCAAACAATTTTTTTTACA+GGG | - | chr4_2:54200982-54201001 | None:intergenic | 20.0% |
| !!! | ATCCAAACAATTTTTTTTAC+AGG | - | chr4_2:54200983-54201002 | None:intergenic | 20.0% |
| !!! | AAAAAAAATCGGTTTTTGTT+TGG | - | chr4_2:54201021-54201040 | None:intergenic | 20.0% |
| !!! | AAGAAATTTTCGTTTTTGTT+TGG | + | chr4_2:54201044-54201063 | Msa0607410:intron | 20.0% |
| !! | TAATTTATACTTGGGTTAAT+AGG | - | chr4_2:54201175-54201194 | None:intergenic | 20.0% |
| !! | CTCAATCTTAATTTATACTT+GGG | - | chr4_2:54201183-54201202 | None:intergenic | 20.0% |
| !! | AAAAAAAATTGTTAGCAACT+TGG | - | chr4_2:54201215-54201234 | None:intergenic | 20.0% |
| !! | GATCAAATTAGTATAATATG+TGG | - | chr4_2:54202420-54202439 | None:intergenic | 20.0% |
| !! | CAAACTAAAATATAATGCAA+TGG | - | chr4_2:54202754-54202773 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTCTTTTTCCGTT+TGG | + | chr4_2:54199625-54199644 | Msa0607410:intron | 25.0% |
| !! | GAATCAAGTGTTATTAGAAA+AGG | + | chr4_2:54200564-54200583 | Msa0607410:intron | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | + | chr4_2:54200703-54200722 | Msa0607410:intron | 25.0% |
| ! | TGCATAATATATGTAAGGTT+CGG | + | chr4_2:54200708-54200727 | Msa0607410:intron | 25.0% |
| ! | ATGTAGGTTACTTGTATTAT+AGG | + | chr4_2:54200858-54200877 | Msa0607410:intron | 25.0% |
| ! | ACGACGATGAAAAAATATAA+AGG | + | chr4_2:54200883-54200902 | Msa0607410:intron | 25.0% |
| ! | CGACGATGAAAAAATATAAA+GGG | + | chr4_2:54200884-54200903 | Msa0607410:intron | 25.0% |
| ! | AGAAATGACATATATTACAG+GGG | - | chr4_2:54200926-54200945 | None:intergenic | 25.0% |
| ! | CAGAAATGACATATATTACA+GGG | - | chr4_2:54200927-54200946 | None:intergenic | 25.0% |
| ! | TCAGAAATGACATATATTAC+AGG | - | chr4_2:54200928-54200947 | None:intergenic | 25.0% |
| !!! | CAAACAATTTTTTTTACAGG+GGG | - | chr4_2:54200980-54200999 | None:intergenic | 25.0% |
| !!! | CCAAACAATTTTTTTTACAG+GGG | - | chr4_2:54200981-54201000 | None:intergenic | 25.0% |
| ! | CCAATAATATAGATCATTTC+CGG | - | chr4_2:54201141-54201160 | None:intergenic | 25.0% |
| ! | CGGAAATGATCTATATTATT+GGG | + | chr4_2:54201139-54201158 | Msa0607410:intron | 25.0% |
| ! | GGAAATGATCTATATTATTG+GGG | + | chr4_2:54201140-54201159 | Msa0607410:intron | 25.0% |
| ! | GAAATGATCTATATTATTGG+GGG | + | chr4_2:54201141-54201160 | Msa0607410:intron | 25.0% |
| ! | AAATGATCTATATTATTGGG+GGG | + | chr4_2:54201142-54201161 | Msa0607410:intron | 25.0% |
| ! | CCTCAATCTTAATTTATACT+TGG | - | chr4_2:54201184-54201203 | None:intergenic | 25.0% |
| ! | CCAAGTATAAATTAAGATTG+AGG | + | chr4_2:54201181-54201200 | Msa0607410:intron | 25.0% |
| ! | TTTATATAGTATAACATGGG+AGG | - | chr4_2:54201490-54201509 | None:intergenic | 25.0% |
| !! | ATTTTTACATCTTGAGCATA+GGG | - | chr4_2:54201909-54201928 | None:intergenic | 25.0% |
| !!! | GTTGTAAATATTGTTTTGCT+TGG | - | chr4_2:54202121-54202140 | None:intergenic | 25.0% |
| !! | TTCTTTAGGAAGTCTATTAT+TGG | - | chr4_2:54202143-54202162 | None:intergenic | 25.0% |
| !! | TATGCTCTTTTTAAACAACA+AGG | + | chr4_2:54202239-54202258 | Msa0607410:CDS | 25.0% |
| !! | TGATATTTAGATGATTTGTC+AGG | - | chr4_2:54202563-54202582 | None:intergenic | 25.0% |
| ! | ACATTACATACATAGAAAGA+TGG | - | chr4_2:54202682-54202701 | None:intergenic | 25.0% |
| TTGAAGTTACACATCCTTAA+GGG | - | chr4_2:54200049-54200068 | None:intergenic | 30.0% | |
| ATTGAAGTTACACATCCTTA+AGG | - | chr4_2:54200050-54200069 | None:intergenic | 30.0% | |
| AATTTATTGTGTCCCTTGAA+AGG | - | chr4_2:54200100-54200119 | None:intergenic | 30.0% | |
| ACTTCTAAATTTGTGACTTC+AGG | - | chr4_2:54200174-54200193 | None:intergenic | 30.0% | |
| ! | AAAATGTCGGTTGACAAAAA+TGG | - | chr4_2:54200378-54200397 | None:intergenic | 30.0% |
| TTTAATATTTATGATGGCCG+AGG | - | chr4_2:54200741-54200760 | None:intergenic | 30.0% | |
| ! | AATAATTGTCTAAAGTGAGC+TGG | - | chr4_2:54200797-54200816 | None:intergenic | 30.0% |
| AAATGACATATATTACAGGG+GGG | - | chr4_2:54200924-54200943 | None:intergenic | 30.0% | |
| GAAATGACATATATTACAGG+GGG | - | chr4_2:54200925-54200944 | None:intergenic | 30.0% | |
| CCCCTGTAAAAAAAATTGTT+TGG | + | chr4_2:54200978-54200997 | Msa0607410:intron | 30.0% | |
| !! | TCGTTTTTGTTTGGCATATT+AGG | + | chr4_2:54201053-54201072 | Msa0607410:intron | 30.0% |
| !! | CGTTTTTGTTTGGCATATTA+GGG | + | chr4_2:54201054-54201073 | Msa0607410:intron | 30.0% |
| !! | GTTTTTGTTTGGCATATTAG+GGG | + | chr4_2:54201055-54201074 | Msa0607410:intron | 30.0% |
| !! | TTTTTGTTTGGCATATTAGG+GGG | + | chr4_2:54201056-54201075 | Msa0607410:intron | 30.0% |
| AAAATTACAGGAAGGAAAAC+CGG | + | chr4_2:54201119-54201138 | Msa0607410:intron | 30.0% | |
| CCGGAAATGATCTATATTAT+TGG | + | chr4_2:54201138-54201157 | Msa0607410:intron | 30.0% | |
| AATGATCTATATTATTGGGG+GGG | + | chr4_2:54201143-54201162 | Msa0607410:intron | 30.0% | |
| AAGCAAGCGTATTTATAAAG+AGG | + | chr4_2:54201265-54201284 | Msa0607410:intron | 30.0% | |
| ! | GTTGCAAACGACAAATTTTA+GGG | - | chr4_2:54201613-54201632 | None:intergenic | 30.0% |
| GTGGATTTATACAAGTCAAA+TGG | + | chr4_2:54201729-54201748 | Msa0607410:CDS | 30.0% | |
| TTCTATGTTGGAACCTTTAA+GGG | - | chr4_2:54201802-54201821 | None:intergenic | 30.0% | |
| ATTCTATGTTGGAACCTTTA+AGG | - | chr4_2:54201803-54201822 | None:intergenic | 30.0% | |
| ATCAAGGATCAATTCTATGT+TGG | - | chr4_2:54201814-54201833 | None:intergenic | 30.0% | |
| ! | GATTTTTACATCTTGAGCAT+AGG | - | chr4_2:54201910-54201929 | None:intergenic | 30.0% |
| AAAATCAAGTACATCAGTGT+TGG | + | chr4_2:54201924-54201943 | Msa0607410:CDS | 30.0% | |
| ! | TGCATTTTGAATGTTTTGCA+TGG | - | chr4_2:54201997-54202016 | None:intergenic | 30.0% |
| ATTTCATCTGCAAGTTTACA+AGG | + | chr4_2:54202017-54202036 | Msa0607410:CDS | 30.0% | |
| ATAGACTTCCTAAAGAACAA+TGG | + | chr4_2:54202146-54202165 | Msa0607410:CDS | 30.0% | |
| TAAACAACAAGGAAACAATG+AGG | + | chr4_2:54202250-54202269 | Msa0607410:CDS | 30.0% | |
| TTTGATGAAAATCAGAAGAC+TGG | + | chr4_2:54202503-54202522 | Msa0607410:CDS | 30.0% | |
| AAAGAGACCAAAATGTTGTT+CGG | - | chr4_2:54202537-54202556 | None:intergenic | 30.0% | |
| !!! | TTTTTCCGTTTGGTGCATAT+TGG | + | chr4_2:54199635-54199654 | Msa0607410:intron | 35.0% |
| GAAAGGTAGACATAGTCATT+TGG | - | chr4_2:54200083-54200102 | None:intergenic | 35.0% | |
| ATGACTATGTCTACCTTTCA+AGG | + | chr4_2:54200084-54200103 | Msa0607410:intron | 35.0% | |
| TGACTATGTCTACCTTTCAA+GGG | + | chr4_2:54200085-54200104 | Msa0607410:intron | 35.0% | |
| !! | ATCTTTAGCTTGTGCCTTTA+GGG | + | chr4_2:54200274-54200293 | Msa0607410:intron | 35.0% |
| GTTCAAATAACAAACCTCTG+CGG | - | chr4_2:54200421-54200440 | None:intergenic | 35.0% | |
| ! | TGAACTTAACTCAGTTGGTA+GGG | + | chr4_2:54200681-54200700 | Msa0607410:intron | 35.0% |
| GTTTGGATTTAACCCCTAAT+AGG | + | chr4_2:54200995-54201014 | Msa0607410:intron | 35.0% | |
| !! | GTTTTTGTTTGGCCTATTAG+GGG | - | chr4_2:54201010-54201029 | None:intergenic | 35.0% |
| !! | GGTTTTTGTTTGGCCTATTA+GGG | - | chr4_2:54201011-54201030 | None:intergenic | 35.0% |
| !! | AGGTTGATGGTTAGTTTGTT+AGG | - | chr4_2:54201242-54201261 | None:intergenic | 35.0% |
| TATAAATACGCTTGCTTGAG+AGG | - | chr4_2:54201262-54201281 | None:intergenic | 35.0% | |
| GTACACGTATGATACTTGTT+TGG | + | chr4_2:54201304-54201323 | Msa0607410:intron | 35.0% | |
| ! | CGTTGCAAACGACAAATTTT+AGG | - | chr4_2:54201614-54201633 | None:intergenic | 35.0% |
| CATAGAATTGATCCTTGATG+TGG | + | chr4_2:54201815-54201834 | Msa0607410:CDS | 35.0% | |
| ATGCCAATCAAGCTACAAAT+TGG | + | chr4_2:54201865-54201884 | Msa0607410:CDS | 35.0% | |
| TGCCAATCAAGCTACAAATT+GGG | + | chr4_2:54201866-54201885 | Msa0607410:CDS | 35.0% | |
| TATTGGGCTTCATTGTCATT+AGG | - | chr4_2:54201963-54201982 | None:intergenic | 35.0% | |
| AAGTTTACAAGGCCAAATCA+AGG | + | chr4_2:54202028-54202047 | Msa0607410:CDS | 35.0% | |
| TGGATATGAATTACCGATCA+AGG | - | chr4_2:54202075-54202094 | None:intergenic | 35.0% | |
| AATTCATATCCACCCAATGA+TGG | + | chr4_2:54202083-54202102 | Msa0607410:CDS | 35.0% | |
| TCAGTGAAAACACCATCATT+GGG | - | chr4_2:54202098-54202117 | None:intergenic | 35.0% | |
| TATCCGTACTTCGCTTATAT+CGG | + | chr4_2:54202191-54202210 | Msa0607410:CDS | 35.0% | |
| TTACCGATATAAGCGAAGTA+CGG | - | chr4_2:54202197-54202216 | None:intergenic | 35.0% | |
| AACAAGGAAACAATGAGGTT+GGG | + | chr4_2:54202255-54202274 | Msa0607410:CDS | 35.0% | |
| TTGATCAATCACGTCAAGAA+TGG | + | chr4_2:54202434-54202453 | Msa0607410:CDS | 35.0% | |
| TGATCAATCACGTCAAGAAT+GGG | + | chr4_2:54202435-54202454 | Msa0607410:CDS | 35.0% | |
| ACAGACCAATATGCACCAAA+CGG | - | chr4_2:54199643-54199662 | None:intergenic | 40.0% | |
| ACACTTATGAGGTAGGTGTA+TGG | - | chr4_2:54200017-54200036 | None:intergenic | 40.0% | |
| !! | GATCTTTAGCTTGTGCCTTT+AGG | + | chr4_2:54200273-54200292 | Msa0607410:intron | 40.0% |
| ! | TCAACCGACATTTTGCTCAA+GGG | + | chr4_2:54200384-54200403 | Msa0607410:intron | 40.0% |
| CATTCCCTTGAGCAAAATGT+CGG | - | chr4_2:54200391-54200410 | None:intergenic | 40.0% | |
| TCTCGTGAACTTAACTCAGT+TGG | + | chr4_2:54200676-54200695 | Msa0607410:intron | 40.0% | |
| GTGAACTTAACTCAGTTGGT+AGG | + | chr4_2:54200680-54200699 | Msa0607410:intron | 40.0% | |
| !! | CGGTTTTTGTTTGGCCTATT+AGG | - | chr4_2:54201012-54201031 | None:intergenic | 40.0% |
| AAGAGGTTAAGTACCTGTAC+TGG | + | chr4_2:54201282-54201301 | Msa0607410:intron | 40.0% | |
| TATCATACGTGTACCAGTAC+AGG | - | chr4_2:54201298-54201317 | None:intergenic | 40.0% | |
| TTCGTTGTGAGTGATGTTTG+TGG | + | chr4_2:54201349-54201368 | Msa0607410:intron | 40.0% | |
| GTATGCGTAAGGTAACAATG+CGG | - | chr4_2:54201576-54201595 | None:intergenic | 40.0% | |
| ATGATGCACATGTATGCGTA+AGG | - | chr4_2:54201587-54201606 | None:intergenic | 40.0% | |
| CATTCCATAGCAAACTCCTA+CGG | - | chr4_2:54201676-54201695 | None:intergenic | 40.0% | |
| ACCATCAAGTCAAGAAGTTG+TGG | + | chr4_2:54201710-54201729 | Msa0607410:CDS | 40.0% | |
| ! | TCCACAACTTCTTGACTTGA+TGG | - | chr4_2:54201714-54201733 | None:intergenic | 40.0% |
| GACCCAATTTGTAGCTTGAT+TGG | - | chr4_2:54201871-54201890 | None:intergenic | 40.0% | |
| !! | CATAGGGTGTCACATACTTT+TGG | - | chr4_2:54201893-54201912 | None:intergenic | 40.0% |
| ! | TTGAATGTTTTGCATGGCAG+TGG | - | chr4_2:54201991-54202010 | None:intergenic | 40.0% |
| ! | TTGCTGTTGAGACCTTGATT+TGG | - | chr4_2:54202043-54202062 | None:intergenic | 40.0% |
| GCAATTGACATGACCTTGAT+CGG | + | chr4_2:54202059-54202078 | Msa0607410:CDS | 40.0% | |
| GTCAGTGAAAACACCATCAT+TGG | - | chr4_2:54202099-54202118 | None:intergenic | 40.0% | |
| CAACAAGGAAACAATGAGGT+TGG | + | chr4_2:54202254-54202273 | Msa0607410:CDS | 40.0% | |
| GGACACAACTATCTTCACAT+CGG | - | chr4_2:54202345-54202364 | None:intergenic | 40.0% | |
| AAGTAAGTCTCAATAGCTCC+GGG | - | chr4_2:54202473-54202492 | None:intergenic | 40.0% | |
| CAAGTAAGTCTCAATAGCTC+CGG | - | chr4_2:54202474-54202493 | None:intergenic | 40.0% | |
| GGAAATAACATGTGCACACA+TGG | - | chr4_2:54202661-54202680 | None:intergenic | 40.0% | |
| ACACCTACCTCATAAGTGTG+AGG | + | chr4_2:54200018-54200037 | Msa0607410:intron | 45.0% | |
| GTTACACATCCTTAAGGGTG+AGG | - | chr4_2:54200044-54200063 | None:intergenic | 45.0% | |
| ! | GTCAACCGACATTTTGCTCA+AGG | + | chr4_2:54200383-54200402 | Msa0607410:intron | 45.0% |
| TAAGGTTCGGAGTTCAACCT+CGG | + | chr4_2:54200721-54200740 | Msa0607410:intron | 45.0% | |
| !! | CAATCCGTAGGAGTTTGCTA+TGG | + | chr4_2:54201669-54201688 | Msa0607410:CDS | 45.0% |
| !! | GGAGTTTGCTATGGAATGCT+TGG | + | chr4_2:54201678-54201697 | Msa0607410:CDS | 45.0% |
| ! | GGAACCTTTAAGGGCTTGAA+GGG | - | chr4_2:54201793-54201812 | None:intergenic | 45.0% |
| ! | TGGAACCTTTAAGGGCTTGA+AGG | - | chr4_2:54201794-54201813 | None:intergenic | 45.0% |
| ATTGATCCTTGATGTGGCCA+AGG | + | chr4_2:54201821-54201840 | Msa0607410:CDS | 45.0% | |
| GAGAGAAGAAAGGGTTTCCT+TGG | - | chr4_2:54201841-54201860 | None:intergenic | 45.0% | |
| GGCATCTGTGAGAGAAGAAA+GGG | - | chr4_2:54201850-54201869 | None:intergenic | 45.0% | |
| TGGCATCTGTGAGAGAAGAA+AGG | - | chr4_2:54201851-54201870 | None:intergenic | 45.0% | |
| CATGGCAGTGGCAATGTATT+GGG | - | chr4_2:54201979-54201998 | None:intergenic | 45.0% | |
| GTGAAAACACCATCATTGGG+TGG | - | chr4_2:54202095-54202114 | None:intergenic | 45.0% | |
| GTGGTGCTCCATTGTTCTTT+AGG | - | chr4_2:54202157-54202176 | None:intergenic | 45.0% | |
| GGATACACATTGGCAAGAAG+TGG | - | chr4_2:54202176-54202195 | None:intergenic | 45.0% | |
| AGCGAAGTACGGATACACAT+TGG | - | chr4_2:54202186-54202205 | None:intergenic | 45.0% | |
| ! | ACTGGGCATCAAAGAGGTTT+TGG | - | chr4_2:54202283-54202302 | None:intergenic | 45.0% |
| AGTCTAACTGGGCATCAAAG+AGG | - | chr4_2:54202289-54202308 | None:intergenic | 45.0% | |
| CTTTGATGCCCAGTTAGACT+CGG | + | chr4_2:54202289-54202308 | Msa0607410:CDS | 45.0% | |
| CGCATATACCGAGTCTAACT+GGG | - | chr4_2:54202300-54202319 | None:intergenic | 45.0% | |
| ! | CCAGTTAGACTCGGTATATG+CGG | + | chr4_2:54202298-54202317 | Msa0607410:CDS | 45.0% |
| TATGCGGCTCTTGAGAAAGT+TGG | + | chr4_2:54202314-54202333 | Msa0607410:CDS | 45.0% | |
| ATGCGGCTCTTGAGAAAGTT+GGG | + | chr4_2:54202315-54202334 | Msa0607410:CDS | 45.0% | |
| AAGATAGTTGTGTCCGAGAG+TGG | + | chr4_2:54202350-54202369 | Msa0607410:CDS | 45.0% | |
| !! | TGTGGAAGCATTGTCAGTTG+AGG | - | chr4_2:54202402-54202421 | None:intergenic | 45.0% |
| ! | GCAGCAACCGAACAACATTT+TGG | + | chr4_2:54202527-54202546 | Msa0607410:CDS | 45.0% |
| !!! | ATTTTTTTTAATATTTATGA+TGG | - | chr4_2:54200747-54200766 | None:intergenic | 5.0% |
| !! | AATTTCTTAAAAAAAAAAAT+CGG | - | chr4_2:54201032-54201051 | None:intergenic | 5.0% |
| TAACACTCGTGCGTTTGCAC+GGG | - | chr4_2:54199985-54200004 | None:intergenic | 50.0% | |
| GTAACACTCGTGCGTTTGCA+CGG | - | chr4_2:54199986-54200005 | None:intergenic | 50.0% | |
| AGGCCTCACACTTATGAGGT+AGG | - | chr4_2:54200024-54200043 | None:intergenic | 50.0% | |
| ! | CGTGCTAACTTGTGCCCTAA+AGG | - | chr4_2:54200291-54200310 | None:intergenic | 50.0% |
| GGGAATGCAAATTTCCGCAG+AGG | + | chr4_2:54200404-54200423 | Msa0607410:intron | 50.0% | |
| ACGCTTGCTTGAGAGGTTGA+TGG | - | chr4_2:54201255-54201274 | None:intergenic | 50.0% | |
| CGTTTGCAACGACTCACACT+TGG | + | chr4_2:54201623-54201642 | Msa0607410:intron | 50.0% | |
| TACGCAGTTGTGCAATCCGT+AGG | + | chr4_2:54201657-54201676 | Msa0607410:intron | 50.0% | |
| ! | TTGAAGGGCTTGTTCGTCTG+GGG | - | chr4_2:54201778-54201797 | None:intergenic | 50.0% |
| ! | CTTGAAGGGCTTGTTCGTCT+GGG | - | chr4_2:54201779-54201798 | None:intergenic | 50.0% |
| CAAGCCCTTCAAGCCCTTAA+AGG | + | chr4_2:54201786-54201805 | Msa0607410:CDS | 50.0% | |
| GCATGGCAGTGGCAATGTAT+TGG | - | chr4_2:54201980-54201999 | None:intergenic | 50.0% | |
| CCGCATATACCGAGTCTAAC+TGG | - | chr4_2:54202301-54202320 | None:intergenic | 50.0% | |
| TGCGGCTCTTGAGAAAGTTG+GGG | + | chr4_2:54202316-54202335 | Msa0607410:CDS | 50.0% | |
| TAGTTGTGTCCGAGAGTGGA+TGG | + | chr4_2:54202354-54202373 | Msa0607410:CDS | 50.0% | |
| ATCAGATGGCCATCCACTCT+CGG | - | chr4_2:54202366-54202385 | None:intergenic | 50.0% | |
| GCACTATCTCCACCATCAGA+TGG | - | chr4_2:54202380-54202399 | None:intergenic | 50.0% | |
| AATGGGACTCCTAAGAGACC+CGG | + | chr4_2:54202452-54202471 | Msa0607410:CDS | 50.0% | |
| TCAATAGCTCCGGGTCTCTT+AGG | - | chr4_2:54202464-54202483 | None:intergenic | 50.0% | |
| GGTGAGGCCTCACACTTATG+AGG | - | chr4_2:54200028-54200047 | None:intergenic | 55.0% | |
| AGTGTGAGGCCTCACCCTTA+AGG | + | chr4_2:54200032-54200051 | Msa0607410:intron | 55.0% | |
| ! | GCTTGAAGGGCTTGTTCGTC+TGG | - | chr4_2:54201780-54201799 | None:intergenic | 55.0% |
| GGGTTTCCTTGGCCACATCA+AGG | - | chr4_2:54201830-54201849 | None:intergenic | 55.0% | |
| GCGGCTCTTGAGAAAGTTGG+GGG | + | chr4_2:54202317-54202336 | Msa0607410:CDS | 55.0% | |
| GAGAGTGGATGGCCATCTGA+TGG | + | chr4_2:54202365-54202384 | Msa0607410:CDS | 55.0% | |
| AGTGGATGGCCATCTGATGG+TGG | + | chr4_2:54202368-54202387 | Msa0607410:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 54199619 | 54202775 | 54199619 | ID=Msa0607410;Name=Msa0607410 |
| chr4_2 | mRNA | 54199619 | 54202775 | 54199619 | ID=Msa0607410-mRNA-1;Parent=Msa0607410;Name=Msa0607410-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0.5|0.5|0|0.5|2|177|312 |
| chr4_2 | exon | 54199619 | 54199622 | 54199619 | ID=Msa0607410-mRNA-1:exon:13548;Parent=Msa0607410-mRNA-1 |
| chr4_2 | exon | 54201664 | 54202775 | 54201664 | ID=Msa0607410-mRNA-1:exon:13549;Parent=Msa0607410-mRNA-1 |
| chr4_2 | CDS | 54199619 | 54199622 | 54199619 | ID=Msa0607410-mRNA-1:cds;Parent=Msa0607410-mRNA-1 |
| chr4_2 | CDS | 54201664 | 54202598 | 54201664 | ID=Msa0607410-mRNA-1:cds;Parent=Msa0607410-mRNA-1 |
| chr4_2 | three_prime_UTR | 54202599 | 54202775 | 54202599 | ID=Msa0607410-mRNA-1:three_prime_utr;Parent=Msa0607410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
