AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607400 MtrunA17_Chr4g0038981 89.032 310 13 1 3 291 20 329 0.0 551
Msa0607400 MtrunA17_Chr4g0038961 78.065 310 47 1 3 291 20 329 1.99e-175 487
Msa0607400 MtrunA17_Chr4g0038971 75.806 310 54 1 3 291 20 329 5.64e-175 486
Msa0607400 MtrunA17_Chr4g0039011 78.176 307 45 2 5 289 41 347 9.83e-174 484
Msa0607400 MtrunA17_Chr4g0038941 65.484 310 84 3 4 291 50 358 4.00e-139 396
Msa0607400 MtrunA17_Chr4g0039071 52.885 312 119 5 4 287 23 334 1.43e-110 325
Msa0607400 MtrunA17_Chr4g0039021 58.362 293 95 6 26 291 1 293 2.67e-108 316
Msa0607400 MtrunA17_Chr2g0294601 50.000 314 127 5 6 290 59 371 4.48e-98 293
Msa0607400 MtrunA17_Chr2g0294591 49.682 314 128 5 6 290 30 342 1.44e-97 291
Msa0607400 MtrunA17_Chr1g0174261 51.930 285 105 6 35 289 1 283 1.95e-90 272
Msa0607400 MtrunA17_Chr7g0250301 41.935 310 148 10 6 286 8 314 4.13e-71 222
Msa0607400 MtrunA17_Chr5g0439251 39.117 317 156 8 6 286 25 340 8.74e-69 221
Msa0607400 MtrunA17_Chr3g0119541 38.629 321 162 8 5 290 25 345 6.85e-67 213
Msa0607400 MtrunA17_Chr4g0003281 37.654 324 167 7 2 290 36 359 7.34e-65 208
Msa0607400 MtrunA17_Chr8g0389741 35.110 319 173 7 6 290 28 346 1.15e-63 208
Msa0607400 MtrunA17_Chr4g0026321 36.278 317 166 7 5 286 28 343 5.79e-63 203
Msa0607400 MtrunA17_Chr4g0034901 36.646 322 167 8 6 291 29 349 1.10e-61 202
Msa0607400 MtrunA17_Chr6g0487261 34.169 319 176 7 6 290 27 345 1.70e-60 200
Msa0607400 MtrunA17_Chr4g0043851 36.792 318 167 8 3 286 29 346 6.10e-60 196
Msa0607400 MtrunA17_Chr2g0321511 34.877 324 171 8 1 286 20 341 6.25e-60 195
Msa0607400 MtrunA17_Chr1g0177171 36.593 317 166 7 5 286 37 353 9.19e-60 197
Msa0607400 MtrunA17_Chr3g0144531 35.962 317 166 8 6 286 28 343 5.96e-59 194
Msa0607400 MtrunA17_Chr1g0146831 35.826 321 164 9 3 286 28 343 6.40e-59 192
Msa0607400 MtrunA17_Chr1g0189111 36.250 320 171 9 5 291 30 349 6.82e-58 191
Msa0607400 MtrunA17_Chr4g0064021 32.923 325 183 8 2 291 22 346 9.98e-58 189
Msa0607400 MtrunA17_Chr7g0250321 41.221 262 126 7 4 239 26 285 6.11e-57 184
Msa0607400 MtrunA17_Chr1g0155001 36.278 317 166 9 6 286 24 340 1.38e-56 187
Msa0607400 MtrunA17_Chr7g0234821 33.022 321 171 10 7 286 27 344 3.01e-54 182
Msa0607400 MtrunA17_Chr1g0161011 35.806 310 162 7 6 278 24 333 4.92e-54 182
Msa0607400 MtrunA17_Chr7g0223961 34.268 321 171 9 3 288 20 335 7.17e-54 181
Msa0607400 MtrunA17_Chr2g0285901 35.535 318 162 9 7 286 25 337 1.82e-53 179
Msa0607400 MtrunA17_Chr7g0253091 34.472 322 173 9 2 286 22 342 7.96e-53 179
Msa0607400 MtrunA17_Chr8g0383311 32.308 325 183 8 3 291 40 363 2.96e-51 175
Msa0607400 MtrunA17_Chr3g0110371 34.727 311 166 7 6 279 24 334 4.22e-51 175
Msa0607400 MtrunA17_Chr5g0434591 34.084 311 168 7 6 279 23 333 1.15e-50 174
Msa0607400 MtrunA17_Chr8g0339191 31.250 320 180 8 7 287 30 348 4.17e-49 169
Msa0607400 MtrunA17_Chr6g0461601 33.333 324 176 9 2 286 22 344 6.70e-49 169
Msa0607400 MtrunA17_Chr4g0046311 30.745 322 181 8 6 286 23 343 3.89e-48 166
Msa0607400 MtrunA17_Chr4g0062771 33.540 322 171 10 6 287 31 349 5.08e-48 167
Msa0607400 MtrunA17_Chr3g0121271 31.481 324 184 8 6 291 26 349 2.17e-47 165
Msa0607400 MtrunA17_Chr4g0075031 32.075 318 179 7 6 286 45 362 2.86e-46 162
Msa0607400 MtrunA17_Chr4g0043511 32.492 317 175 10 6 286 62 375 8.24e-46 162
Msa0607400 MtrunA17_Chr4g0069801 31.310 313 178 9 10 286 32 343 9.85e-45 158
Msa0607400 MtrunA17_Chr3g0105981 32.288 319 179 11 4 287 25 341 2.97e-44 155
Msa0607400 MtrunA17_Chr2g0290821 31.677 322 177 10 5 286 27 345 1.18e-43 155
Msa0607400 MtrunA17_Chr8g0378621 30.124 322 188 7 6 290 26 347 1.43e-43 155
Msa0607400 MtrunA17_Chr3g0129341 31.077 325 185 10 3 291 31 352 4.61e-43 153
Msa0607400 MtrunA17_Chr3g0138741 32.609 322 178 10 3 287 28 347 5.00e-41 148
Msa0607400 MtrunA17_Chr2g0306311 29.107 347 179 10 6 287 30 374 1.18e-40 147
Msa0607400 MtrunA17_Chr1g0148391 32.407 324 180 10 3 289 23 344 3.86e-40 145
Msa0607400 MtrunA17_Chr4g0076581 30.938 320 180 11 5 286 32 348 6.52e-38 139
Msa0607400 MtrunA17_Chr2g0294581 47.015 134 67 2 6 135 76 209 8.91e-33 122
Msa0607400 MtrunA17_Chr2g0294581 53.535 99 43 3 194 290 187 284 2.66e-27 107
Msa0607400 MtrunA17_Chr4g0018861 60.227 88 34 1 203 289 87 174 2.00e-31 116
Msa0607400 MtrunA17_Chr4g0018861 53.030 66 31 0 4 69 20 85 5.99e-20 86.3
Msa0607400 MtrunA17_Chr4g0018771 57.143 91 38 1 200 289 86 176 3.11e-31 116
Msa0607400 MtrunA17_Chr4g0018771 53.030 66 31 0 4 69 24 89 1.55e-19 85.1
Msa0607400 MtrunA17_Chr5g0436361 28.082 292 167 9 32 286 63 348 2.34e-28 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607400 AT3G57260.1 52.077 313 118 8 6 291 32 339 1.66e-101 300
Msa0607400 AT3G57260.2 52.077 313 118 8 6 291 48 355 2.58e-101 301
Msa0607400 AT4G16260.1 46.984 315 137 6 4 290 22 334 7.25e-96 286
Msa0607400 AT3G57240.1 47.634 317 131 7 3 291 32 341 1.21e-92 278
Msa0607400 AT3G57270.1 46.645 313 139 5 6 290 27 339 3.04e-90 272
Msa0607400 AT4G16260.2 45.928 307 136 6 12 290 1 305 2.99e-89 268
Msa0607400 AT5G56590.1 37.072 321 166 7 6 290 26 346 4.72e-68 220
Msa0607400 AT2G05790.1 37.695 321 165 7 5 290 24 344 9.71e-67 216
Msa0607400 AT5G20340.1 38.562 306 157 9 5 281 42 345 2.86e-65 208
Msa0607400 AT4G26830.1 38.558 319 162 8 6 290 25 343 1.71e-64 209
Msa0607400 AT4G26830.2 38.558 319 162 8 6 290 29 347 1.96e-64 209
Msa0607400 AT5G20390.1 38.158 304 157 9 6 280 33 334 5.92e-64 205
Msa0607400 AT5G55180.2 37.383 321 166 9 6 291 27 347 2.28e-63 207
Msa0607400 AT4G34480.2 37.975 316 161 8 6 286 26 341 2.31e-63 204
Msa0607400 AT5G55180.1 37.383 321 166 9 6 291 27 347 2.57e-63 206
Msa0607400 AT5G42100.2 38.700 323 161 8 1 286 22 344 3.00e-63 205
Msa0607400 AT5G42100.1 38.700 323 161 8 1 286 22 344 4.68e-63 205
Msa0607400 AT2G16230.1 38.291 316 160 9 6 286 25 340 2.93e-62 205
Msa0607400 AT1G32860.1 36.025 322 170 8 5 290 28 349 5.55e-62 202
Msa0607400 AT1G77790.1 36.859 312 162 9 7 286 31 339 7.13e-62 199
Msa0607400 AT4G18340.2 36.223 323 172 7 3 291 31 353 1.52e-61 199
Msa0607400 AT4G34480.1 37.975 316 161 8 6 286 26 341 1.83e-61 202
Msa0607400 AT4G18340.1 36.223 323 172 7 3 291 31 353 2.04e-61 200
Msa0607400 AT5G20330.1 37.377 305 160 9 5 280 33 335 9.37e-61 196
Msa0607400 AT5G42720.1 37.224 317 163 9 6 286 26 342 9.79e-61 199
Msa0607400 AT1G33220.1 37.801 291 151 8 5 266 33 322 4.89e-60 194
Msa0607400 AT2G26600.1 32.615 325 184 8 2 291 30 354 1.24e-59 195
Msa0607400 AT1G30080.2 36.478 318 168 9 3 286 33 350 2.31e-59 194
Msa0607400 AT2G01630.2 36.792 318 164 8 6 286 23 340 2.49e-59 194
Msa0607400 AT1G30080.1 36.478 318 168 9 3 286 33 350 4.22e-59 194
Msa0607400 AT2G01630.3 36.792 318 164 8 6 286 23 340 8.25e-59 194
Msa0607400 AT5G24318.4 34.277 318 169 8 5 286 29 342 2.86e-58 191
Msa0607400 AT2G01630.1 37.419 310 157 8 6 278 23 332 3.86e-58 194
Msa0607400 AT3G15800.1 34.891 321 173 8 2 286 39 359 7.26e-58 191
Msa0607400 AT2G27500.2 33.962 318 175 9 4 286 27 344 1.80e-57 189
Msa0607400 AT3G61810.1 33.230 322 175 6 6 291 55 372 3.05e-57 188
Msa0607400 AT2G27500.1 33.962 318 175 9 4 286 27 344 3.38e-57 189
Msa0607400 AT5G24318.2 34.277 318 169 8 5 286 29 342 9.50e-57 189
Msa0607400 AT4G29360.1 34.169 319 176 7 6 290 27 345 1.44e-56 191
Msa0607400 AT5G24318.1 34.277 318 169 8 5 286 29 342 1.60e-56 189
Msa0607400 AT4G29360.2 34.169 319 176 7 6 290 37 355 1.75e-56 191
Msa0607400 AT5G20560.1 34.211 304 170 8 6 280 34 336 5.97e-55 181
Msa0607400 AT1G77780.1 33.981 309 172 10 7 286 25 330 1.73e-53 178
Msa0607400 AT1G66250.1 34.906 318 169 8 6 286 32 348 9.48e-51 174
Msa0607400 AT3G07320.1 30.341 323 187 7 2 286 21 343 1.07e-49 171
Msa0607400 AT2G19440.2 33.127 323 177 9 1 286 16 336 1.97e-49 171
Msa0607400 AT2G19440.1 33.127 323 177 9 1 286 16 336 1.97e-49 171
Msa0607400 AT3G46570.1 33.438 320 168 11 6 286 27 340 3.24e-48 164
Msa0607400 AT5G58480.1 32.927 328 177 12 3 291 23 346 3.42e-48 167
Msa0607400 AT5G18220.1 31.761 318 182 7 3 286 27 343 5.40e-48 167
Msa0607400 AT5G58090.1 33.019 318 176 9 5 286 21 337 2.59e-47 165
Msa0607400 AT1G64760.1 31.988 322 182 8 1 286 20 340 3.06e-47 165
Msa0607400 AT1G64760.2 31.988 322 182 8 1 286 20 340 3.06e-47 165
Msa0607400 AT4G14080.1 30.650 323 185 8 6 290 42 363 1.32e-46 163
Msa0607400 AT3G55430.1 32.177 317 179 10 3 286 26 339 6.17e-46 160
Msa0607400 AT1G11820.1 31.290 310 176 7 6 278 44 353 7.50e-46 159
Msa0607400 AT2G27500.3 35.178 253 130 8 68 286 14 266 3.43e-45 155
Msa0607400 AT2G26600.2 32.171 258 141 7 68 291 3 260 5.65e-45 154
Msa0607400 AT1G11820.3 31.290 310 176 7 6 278 44 353 5.87e-45 159
Msa0607400 AT3G23770.1 30.769 325 185 8 6 290 37 361 6.08e-45 159
Msa0607400 AT1G11820.2 31.290 310 176 7 6 278 44 353 1.27e-44 158
Msa0607400 AT3G13560.4 31.132 318 182 8 6 286 26 343 1.76e-44 158
Msa0607400 AT3G13560.1 31.132 318 182 8 6 286 26 343 1.76e-44 158
Msa0607400 AT3G13560.2 31.132 318 182 8 6 286 26 343 1.76e-44 158
Msa0607400 AT3G13560.5 31.132 318 182 8 6 286 26 343 1.76e-44 158
Msa0607400 AT3G13560.3 31.132 318 182 8 6 286 26 343 1.76e-44 158
Msa0607400 AT4G31140.1 31.790 324 184 9 3 290 24 346 1.72e-43 155
Msa0607400 AT3G24330.1 31.776 321 178 11 6 287 39 357 4.01e-43 154
Msa0607400 AT3G04010.1 29.630 324 191 8 3 290 30 352 1.60e-41 150
Msa0607400 AT2G39640.1 32.166 314 175 11 5 286 29 336 3.57e-41 149
Msa0607400 AT5G64790.1 29.231 325 193 8 2 290 24 347 5.21e-40 145
Msa0607400 AT4G34480.3 38.596 228 106 7 93 286 3 230 5.59e-40 144
Msa0607400 AT4G17180.1 29.874 318 183 9 5 287 24 336 6.12e-40 145
Msa0607400 AT5G20870.1 29.712 313 172 11 23 290 47 356 1.50e-36 136
Msa0607400 AT5G24318.3 36.232 207 95 6 113 286 1 203 7.01e-36 131
Msa0607400 AT3G55780.1 27.483 302 175 10 29 291 58 354 4.39e-32 122

Find 68 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTATGTTGGAACCTTTA+AGG 0.089668 4_2:-54191023 None:intergenic
CAAGCCCTTCAAGCCCTTAA+AGG 0.219614 4_2:+54191009 Msa0607400:CDS
GCTTGAAGGGCTTGTTCGTC+TGG 0.228164 4_2:-54191000 None:intergenic
CAGCGTATACTGAGTCTAAT+TGG 0.233502 4_2:-54191458 None:intergenic
GAAGCAACTGAACAACATTT+TGG 0.249494 4_2:+54191687 Msa0607400:CDS
TTCTTTAGGAAGTCTATTAT+TGG 0.255166 4_2:-54191300 None:intergenic
ATATCATATATTGTTACTTA+TGG 0.257904 4_2:+54191875 Msa0607400:three_prime_UTR
ATTGGGCATCAAAGAGGTTT+TGG 0.289119 4_2:-54191440 None:intergenic
GTGGCGCTCCATTGTTCTTT+AGG 0.292675 4_2:-54191314 None:intergenic
CATCGCAGTGGCAATGTATT+CGG 0.303400 4_2:-54191199 None:intergenic
TTCTATGTTGGAACCTTTAA+GGG 0.304709 4_2:-54191022 None:intergenic
TCCACAACTTCTTGACTTGA+TGG 0.320456 4_2:-54190934 None:intergenic
ATGGCAATGAAGCTACAAAT+TGG 0.321660 4_2:+54191088 Msa0607400:CDS
TCAATAGCTCCGGGTCTCTT+AGG 0.330851 4_2:-54191621 None:intergenic
TATTCGGCTTCATTGTCATT+AGG 0.345438 4_2:-54191183 None:intergenic
ACGCTGCTCTTGAGAAAGTT+GGG 0.379600 4_2:+54191475 Msa0607400:CDS
CTTGAAGGGCTTGTTCGTCT+GGG 0.403107 4_2:-54190999 None:intergenic
GTGGATGGCCATCGGAAGGC+GGG 0.410865 4_2:+54191529 Msa0607400:CDS
TTGATCAATCACGTCAAGAA+TGG 0.432895 4_2:+54191594 Msa0607400:CDS
CAACAAGGAAACAATGAAGT+TGG 0.438007 4_2:+54191414 Msa0607400:CDS
TACGCTGCTCTTGAGAAAGT+TGG 0.441895 4_2:+54191474 Msa0607400:CDS
TGGAACCTTTAAGGGCTTGA+AGG 0.446944 4_2:-54191014 None:intergenic
TGATATTTAGATGATTTGTC+AGG 0.458349 4_2:-54191720 None:intergenic
CAAGTAAGTCTCAATAGCTC+CGG 0.459135 4_2:-54191631 None:intergenic
GTGGATTTATATAAGTCAAA+TGG 0.466757 4_2:+54190952 Msa0607400:CDS
GCCATCTGTAAGAGAAGAAA+GGG 0.468174 4_2:-54191070 None:intergenic
TTCCGATGGCCATCCACTCT+CGG 0.475708 4_2:-54191523 None:intergenic
AAGAGAAGAAAGGGTTTCCT+TGG 0.481114 4_2:-54191061 None:intergenic
AGCGTATACTGAGTCTAATT+GGG 0.488716 4_2:-54191457 None:intergenic
TGATCAATCACGTCAAGAAT+GGG 0.496832 4_2:+54191595 Msa0607400:CDS
TGGCAATGAAGCTACAAATT+GGG 0.496926 4_2:+54191089 Msa0607400:CDS
GGAGTTTGCTATGGAATGCT+TGG 0.498177 4_2:+54190901 Msa0607400:CDS
AACAAGGAAACAATGAAGTT+GGG 0.501730 4_2:+54191415 Msa0607400:CDS
AAAATCAAGTACATCAGTGT+TGG 0.515246 4_2:+54191147 Msa0607400:CDS
TGCCATCTGTAAGAGAAGAA+AGG 0.516666 4_2:-54191071 None:intergenic
GGAACCTTTAAGGGCTTGAA+GGG 0.527762 4_2:-54191013 None:intergenic
ACCCTTTCTTCTCTTACAGA+TGG 0.527847 4_2:+54191069 Msa0607400:CDS
ATTTCATCAGCAAATTTACA+AGG 0.530020 4_2:+54191240 Msa0607400:CDS
GCACTATCCCCGCCTTCCGA+TGG 0.531293 4_2:-54191537 None:intergenic
CAATCCGTCGGAGTTTGCTA+TGG 0.536167 4_2:+54190892 Msa0607400:CDS
TTATCTTTATAAGCGATGTA+CGG 0.538117 4_2:-54191354 None:intergenic
ACCATCAAGTCAAGAAGTTG+TGG 0.540439 4_2:+54190933 Msa0607400:CDS
CGCTGCTCTTGAGAAAGTTG+GGG 0.541508 4_2:+54191476 Msa0607400:CDS
TTGAAGGGCTTGTTCGTCTG+GGG 0.546385 4_2:-54190998 None:intergenic
ATCAAGGATCAATTCTATGT+TGG 0.547280 4_2:-54191034 None:intergenic
AAGTAAGTCTCAATAGCTCC+GGG 0.554259 4_2:-54191630 None:intergenic
TCATTATATACATAGAAAGA+TGG 0.557328 4_2:-54191838 None:intergenic
AAATTTACAAGGACAAATCA+AGG 0.558957 4_2:+54191251 Msa0607400:CDS
ATTGATCCTTGATGTGGCCA+AGG 0.559139 4_2:+54191044 Msa0607400:CDS
AGTGGATGGCCATCGGAAGG+CGG 0.559906 4_2:+54191528 Msa0607400:CDS
GGGTTTCCTTGGCCACATCA+AGG 0.566068 4_2:-54191050 None:intergenic
GTCCGAGAGTGGATGGCCAT+CGG 0.573233 4_2:+54191521 Msa0607400:CDS
TTTGATGAAAATCAGAAGAA+TGG 0.575433 4_2:+54191663 Msa0607400:CDS
TAGTTGTGTCCGAGAGTGGA+TGG 0.576028 4_2:+54191514 Msa0607400:CDS
TACACAGTTGTGCAATCCGT+CGG 0.578893 4_2:+54190880 Msa0607400:intron
AGTCTAATTGGGCATCAAAG+AGG 0.581605 4_2:-54191446 None:intergenic
AAGATAGTTGTGTCCGAGAG+TGG 0.586296 4_2:+54191510 Msa0607400:CDS
TGGATGGCCATCGGAAGGCG+GGG 0.589764 4_2:+54191530 Msa0607400:CDS
ATAGACTTCCTAAAGAACAA+TGG 0.595560 4_2:+54191306 Msa0607400:CDS
GAGAGTGGATGGCCATCGGA+AGG 0.597361 4_2:+54191525 Msa0607400:CDS
GGATACACATTGGCAAGAAG+TGG 0.604193 4_2:-54191333 None:intergenic
CATAGAATTGATCCTTGATG+TGG 0.622652 4_2:+54191038 Msa0607400:CDS
TGTGGAAGCATTATCAGTTG+AGG 0.636860 4_2:-54191559 None:intergenic
AATGGGACTCCTAAGAGACC+CGG 0.649769 4_2:+54191612 Msa0607400:CDS
AGCGATGTACGGATACACAT+TGG 0.667248 4_2:-54191343 None:intergenic
GCTGCTCTTGAGAAAGTTGG+GGG 0.679213 4_2:+54191477 Msa0607400:CDS
CATTCCATAGCAAACTCCGA+CGG 0.691117 4_2:-54190896 None:intergenic
GGACACAACTATCTTCACAT+CGG 0.708430 4_2:-54191502 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTTTTGAAGAAT+TGG - chr4_2:54188494-54188513 None:intergenic 10.0%
!!! TATTTTTTTAATATTTGTGA+TGG - chr4_2:54189347-54189366 None:intergenic 10.0%
!!! CATTTTATTAATATTTATGA+TGG - chr4_2:54189430-54189449 None:intergenic 10.0%
!!! AGTTTAAAATAAATTAAAGT+AGG - chr4_2:54190761-54190780 None:intergenic 10.0%
!! AAAATTAAATCTTAGTTGAT+CGG - chr4_2:54188284-54188303 None:intergenic 15.0%
!! TTTCGATATTAATTATTACT+AGG + chr4_2:54188301-54188320 Msa0607400:intron 15.0%
!! TCGAATAATATAATTTGAAT+TGG - chr4_2:54188526-54188545 None:intergenic 15.0%
!!! AGTTCACATTATAATATTTT+GGG + chr4_2:54188711-54188730 Msa0607400:intron 15.0%
!! AAAAAATATAAAGGGTTAAT+AGG + chr4_2:54189573-54189592 Msa0607400:intron 15.0%
!! TAAATCAAAAAACAATTACA+GGG - chr4_2:54189638-54189657 None:intergenic 15.0%
!!! AAAACAATTTTTTTTTACAG+GGG - chr4_2:54189662-54189681 None:intergenic 15.0%
!!! CAAAACAATTTTTTTTTACA+GGG - chr4_2:54189663-54189682 None:intergenic 15.0%
!!! TCAAAACAATTTTTTTTTAC+AGG - chr4_2:54189664-54189683 None:intergenic 15.0%
!!! AAGAAATTTTCATTTTTGTA+TGG + chr4_2:54189733-54189752 Msa0607400:intron 15.0%
!!! ATCAAAACAAATTTTTTTAC+AGG + chr4_2:54189773-54189792 Msa0607400:intron 15.0%
!!! TCAAAACAAATTTTTTTACA+GGG + chr4_2:54189774-54189793 Msa0607400:intron 15.0%
!! TAAATAAAAAAATTTACAGG+AGG + chr4_2:54189799-54189818 Msa0607400:intron 15.0%
!! AAATAAAAAAATTTACAGGA+GGG + chr4_2:54189800-54189819 Msa0607400:intron 15.0%
!!! TATTATTTTTTTTGTTTCCA+AGG + chr4_2:54190288-54190307 Msa0607400:intron 15.0%
!! TAATGTGTAATATTATCAAA+TGG + chr4_2:54190337-54190356 Msa0607400:intron 15.0%
!! TAAAAGTAAAAAATTGTGTT+TGG - chr4_2:54190655-54190674 None:intergenic 15.0%
!!! GTTTTTATATAGTATAACAT+GGG - chr4_2:54190716-54190735 None:intergenic 15.0%
!!! AGTTTTTATATAGTATAACA+TGG - chr4_2:54190717-54190736 None:intergenic 15.0%
!!! ATATCATATATTGTTACTTA+TGG + chr4_2:54191875-54191894 Msa0607400:three_prime_UTR 15.0%
!! ATATCTTGATTTCATATTGA+TGG + chr4_2:54188353-54188372 Msa0607400:intron 20.0%
!! ACAACATAAACAACAAAATA+AGG - chr4_2:54188431-54188450 None:intergenic 20.0%
!! TGTGTAACTTCAATAAAATA+TGG + chr4_2:54188635-54188654 Msa0607400:intron 20.0%
!!! GAGTTCACATTATAATATTT+TGG + chr4_2:54188710-54188729 Msa0607400:intron 20.0%
!! AAAGATATACAAAGAAAAGT+AGG + chr4_2:54189067-54189086 Msa0607400:intron 20.0%
!! TATTTGTAATTCTATCTACT+TGG - chr4_2:54189251-54189270 None:intergenic 20.0%
!! AAATCAAAAAACAATTACAG+GGG - chr4_2:54189637-54189656 None:intergenic 20.0%
!! GTAAATCAAAAAACAATTAC+AGG - chr4_2:54189639-54189658 None:intergenic 20.0%
!!! AAACAATTTTTTTTTACAGG+GGG - chr4_2:54189661-54189680 None:intergenic 20.0%
!!! AAATAAAATCGGTTTTTGTT+TGG - chr4_2:54189702-54189721 None:intergenic 20.0%
!!! CAAAACAAATTTTTTTACAG+GGG + chr4_2:54189775-54189794 Msa0607400:intron 20.0%
!!! AAAACAAATTTTTTTACAGG+GGG + chr4_2:54189776-54189795 Msa0607400:intron 20.0%
!! GGGTAAATAAAAAAATTTAC+AGG + chr4_2:54189796-54189815 Msa0607400:intron 20.0%
!! TAATTTATACTTGGGTTAAT+AGG - chr4_2:54189863-54189882 None:intergenic 20.0%
!! CTCAATCTTAATTTATACTT+GGG - chr4_2:54189871-54189890 None:intergenic 20.0%
!!! AAAAAAATTTGTTAGCAACT+TGG - chr4_2:54189903-54189922 None:intergenic 20.0%
!!! GATCAAATTTTGATAATATG+TGG - chr4_2:54191580-54191599 None:intergenic 20.0%
!! TCATTATATACATAGAAAGA+TGG - chr4_2:54191841-54191860 None:intergenic 20.0%
!!! CTTTTTTTTCTTTTTCCGTT+TGG + chr4_2:54188206-54188225 Msa0607400:intron 25.0%
!! CTAATATTTTACTGTGTTAG+TGG + chr4_2:54188914-54188933 Msa0607400:intron 25.0%
!! AAAATGTCGATTGACAAAAA+TGG - chr4_2:54188976-54188995 None:intergenic 25.0%
!!! TTTGTTATTTGAACCATTTG+TGG + chr4_2:54189025-54189044 Msa0607400:intron 25.0%
!!! TTGTTATTTGAACCATTTGT+GGG + chr4_2:54189026-54189045 Msa0607400:intron 25.0%
!! GAATCAAGTGTTATTAGAAA+AGG + chr4_2:54189162-54189181 Msa0607400:intron 25.0%
! GACAATGCATAATATATGTA+AGG + chr4_2:54189302-54189321 Msa0607400:intron 25.0%
!! AATAATTGTCTAAAATGAGC+TGG - chr4_2:54189478-54189497 None:intergenic 25.0%
! ACTTACAATTCAGAATATGT+AGG + chr4_2:54189523-54189542 Msa0607400:intron 25.0%
! ATGTAGGTTACTTGTATTAT+AGG + chr4_2:54189539-54189558 Msa0607400:intron 25.0%
! ACGACGATGAAAAAATATAA+AGG + chr4_2:54189564-54189583 Msa0607400:intron 25.0%
! CGACGATGAAAAAATATAAA+GGG + chr4_2:54189565-54189584 Msa0607400:intron 25.0%
! AAATGACATATATTACAGGA+GGG - chr4_2:54189605-54189624 None:intergenic 25.0%
! AATCAAAAAACAATTACAGG+GGG - chr4_2:54189636-54189655 None:intergenic 25.0%
!! ATTTTTGTATGGCCTATATT+AGG + chr4_2:54189744-54189763 Msa0607400:intron 25.0%
!! TTTTTGTATGGCCTATATTA+GGG + chr4_2:54189745-54189764 Msa0607400:intron 25.0%
! CCAATAATATAGATCATTTC+CGG - chr4_2:54189830-54189849 None:intergenic 25.0%
! CGGAAATGATCTATATTATT+GGG + chr4_2:54189828-54189847 Msa0607400:intron 25.0%
! GGAAATGATCTATATTATTG+GGG + chr4_2:54189829-54189848 Msa0607400:intron 25.0%
! GAAATGATCTATATTATTGG+GGG + chr4_2:54189830-54189849 Msa0607400:intron 25.0%
! AAATGATCTATATTATTGGG+GGG + chr4_2:54189831-54189850 Msa0607400:intron 25.0%
! CCTCAATCTTAATTTATACT+TGG - chr4_2:54189872-54189891 None:intergenic 25.0%
! CCAAGTATAAATTAAGATTG+AGG + chr4_2:54189869-54189888 Msa0607400:intron 25.0%
! TAACCTCTTTATAAATAGAG+TGG - chr4_2:54190161-54190180 None:intergenic 25.0%
!!! TTTTTGATTCATGATTCAGT+GGG + chr4_2:54190387-54190406 Msa0607400:intron 25.0%
!! ATCCTTTAAAAACTAAAACC+AGG + chr4_2:54190500-54190519 Msa0607400:intron 25.0%
! TTTATATAGTATAACATGGG+AGG - chr4_2:54190713-54190732 None:intergenic 25.0%
! GTGGATTTATATAAGTCAAA+TGG + chr4_2:54190952-54190971 Msa0607400:CDS 25.0%
!! ATTTTTACATCTTGAGCATA+GGG - chr4_2:54191132-54191151 None:intergenic 25.0%
! ATTTCATCAGCAAATTTACA+AGG + chr4_2:54191240-54191259 Msa0607400:CDS 25.0%
! AAATTTACAAGGACAAATCA+AGG + chr4_2:54191251-54191270 Msa0607400:CDS 25.0%
!! TTCTTTAGGAAGTCTATTAT+TGG - chr4_2:54191303-54191322 None:intergenic 25.0%
! TTATCTTTATAAGCGATGTA+CGG - chr4_2:54191357-54191376 None:intergenic 25.0%
!! TATGCTCTTTTTAAACAACA+AGG + chr4_2:54191399-54191418 Msa0607400:CDS 25.0%
! TTTGATGAAAATCAGAAGAA+TGG + chr4_2:54191663-54191682 Msa0607400:CDS 25.0%
!! TGATATTTAGATGATTTGTC+AGG - chr4_2:54191723-54191742 None:intergenic 25.0%
GACATGCAACTTACAAAATA+AGG - chr4_2:54188397-54188416 None:intergenic 30.0%
TTGAAGTTACACATCCTTAA+GGG - chr4_2:54188628-54188647 None:intergenic 30.0%
ATTGAAGTTACACATCCTTA+AGG - chr4_2:54188629-54188648 None:intergenic 30.0%
AATTTATTGTGTCCCTTGAA+AGG - chr4_2:54188679-54188698 None:intergenic 30.0%
!! ATCTTTAACTTGTGCCTTTA+GGG + chr4_2:54188874-54188893 Msa0607400:intron 30.0%
TTTAATATTTGTGATGGTCG+AGG - chr4_2:54189341-54189360 None:intergenic 30.0%
ATTAATATTTATGATGGCCG+AGG - chr4_2:54189424-54189443 None:intergenic 30.0%
GAAATGACATATATTACAGG+AGG - chr4_2:54189606-54189625 None:intergenic 30.0%
CCAGAAATGACATATATTAC+AGG - chr4_2:54189609-54189628 None:intergenic 30.0%
! CCTGTAATATATGTCATTTC+TGG + chr4_2:54189606-54189625 Msa0607400:intron 30.0%
! TTTTGTATGGCCTATATTAG+GGG + chr4_2:54189746-54189765 Msa0607400:intron 30.0%
CCGGAAATGATCTATATTAT+TGG + chr4_2:54189827-54189846 Msa0607400:intron 30.0%
TCACCACTCTATTTATAAAG+AGG + chr4_2:54190155-54190174 Msa0607400:intron 30.0%
!! CTTTTTGATTCATGATTCAG+TGG + chr4_2:54190386-54190405 Msa0607400:intron 30.0%
!! TTTTGATTCATGATTCAGTG+GGG + chr4_2:54190388-54190407 Msa0607400:intron 30.0%
! GTTGCAAACGACAAATTTTA+GGG - chr4_2:54190836-54190855 None:intergenic 30.0%
TTCTATGTTGGAACCTTTAA+GGG - chr4_2:54191025-54191044 None:intergenic 30.0%
ATTCTATGTTGGAACCTTTA+AGG - chr4_2:54191026-54191045 None:intergenic 30.0%
ATCAAGGATCAATTCTATGT+TGG - chr4_2:54191037-54191056 None:intergenic 30.0%
! GATTTTTACATCTTGAGCAT+AGG - chr4_2:54191133-54191152 None:intergenic 30.0%
AAAATCAAGTACATCAGTGT+TGG + chr4_2:54191147-54191166 Msa0607400:CDS 30.0%
ATAGACTTCCTAAAGAACAA+TGG + chr4_2:54191306-54191325 Msa0607400:CDS 30.0%
AACAAGGAAACAATGAAGTT+GGG + chr4_2:54191415-54191434 Msa0607400:CDS 30.0%
! CTTCTGATTTTCATCAAACA+TGG - chr4_2:54191661-54191680 None:intergenic 30.0%
!!! TTTTTCCGTTTGGTGCATAT+CGG + chr4_2:54188216-54188235 Msa0607400:intron 35.0%
GAAAGGTAGACATAGTCATT+TGG - chr4_2:54188662-54188681 None:intergenic 35.0%
ATGACTATGTCTACCTTTCA+AGG + chr4_2:54188663-54188682 Msa0607400:intron 35.0%
TGACTATGTCTACCTTTCAA+GGG + chr4_2:54188664-54188683 Msa0607400:intron 35.0%
!! GATCTTTAACTTGTGCCTTT+AGG + chr4_2:54188873-54188892 Msa0607400:intron 35.0%
! TCAATCGACATTTTGCTCAA+GGG + chr4_2:54188982-54189001 Msa0607400:intron 35.0%
GTTCAAATAACAAACCTCTG+CGG - chr4_2:54189019-54189038 None:intergenic 35.0%
TTTGTCAATTGTCCCACAAA+TGG - chr4_2:54189041-54189060 None:intergenic 35.0%
! TGAACTTAACTCAGTTGGTA+GGG + chr4_2:54189280-54189299 Msa0607400:intron 35.0%
!!! TGTTTTGATTTACCCCCAAT+AGG + chr4_2:54189676-54189695 Msa0607400:intron 35.0%
TTTGTATGGCCTATATTAGG+GGG + chr4_2:54189747-54189766 Msa0607400:intron 35.0%
TTTGATTCACCCCCTAATAT+AGG - chr4_2:54189759-54189778 None:intergenic 35.0%
AAATTTACAGGAGGGAAAAC+CGG + chr4_2:54189808-54189827 Msa0607400:intron 35.0%
!! AGGTTGATGGTTAGTTTGTT+AGG - chr4_2:54189930-54189949 None:intergenic 35.0%
TATAAATACGCTTGCTTGAG+AGG - chr4_2:54189950-54189969 None:intergenic 35.0%
CTCAAGCAAGCGTATTTATA+AGG + chr4_2:54189950-54189969 Msa0607400:intron 35.0%
! CAATGAGGAGTATGGATAAA+GGG - chr4_2:54189993-54190012 None:intergenic 35.0%
! ACAATGAGGAGTATGGATAA+AGG - chr4_2:54189994-54190013 None:intergenic 35.0%
CAAAATATCCCTAATGCATG+GGG - chr4_2:54190020-54190039 None:intergenic 35.0%
CCAAAATATCCCTAATGCAT+GGG - chr4_2:54190021-54190040 None:intergenic 35.0%
ACCAAAATATCCCTAATGCA+TGG - chr4_2:54190022-54190041 None:intergenic 35.0%
ACTCTCTCTTCTATTTGTGT+GGG + chr4_2:54190061-54190080 Msa0607400:intron 35.0%
! AGAATTTTGTGTGGGTGTAA+AGG + chr4_2:54190103-54190122 Msa0607400:intron 35.0%
! GAATTTTGTGTGGGTGTAAA+GGG + chr4_2:54190104-54190123 Msa0607400:intron 35.0%
AAGAGGTTAAGTACCTATAC+TGG + chr4_2:54190172-54190191 Msa0607400:intron 35.0%
TATCATACGTGTACCAGTAT+AGG - chr4_2:54190188-54190207 None:intergenic 35.0%
GTACACGTATGATACTTGTT+TGG + chr4_2:54190194-54190213 Msa0607400:intron 35.0%
TATGATACTTGTTTGGTACC+AGG + chr4_2:54190201-54190220 Msa0607400:intron 35.0%
ATGATACTTGTTTGGTACCA+GGG + chr4_2:54190202-54190221 Msa0607400:intron 35.0%
TTTCCAAGGCACGAAAATAT+TGG + chr4_2:54190302-54190321 Msa0607400:intron 35.0%
! TAACCAATATTTTCGTGCCT+TGG - chr4_2:54190308-54190327 None:intergenic 35.0%
TTTGATTCATGATTCAGTGG+GGG + chr4_2:54190389-54190408 Msa0607400:intron 35.0%
!!! GGCCTGGTTTTAGTTTTTAA+AGG - chr4_2:54190505-54190524 None:intergenic 35.0%
AAAAACTAAAACCAGGCCTA+CGG + chr4_2:54190507-54190526 Msa0607400:intron 35.0%
AAAGTAGATCGTACCAAACA+GGG - chr4_2:54190547-54190566 None:intergenic 35.0%
AAAAGTAGATCGTACCAAAC+AGG - chr4_2:54190548-54190567 None:intergenic 35.0%
! CGTTGCAAACGACAAATTTT+AGG - chr4_2:54190837-54190856 None:intergenic 35.0%
CATAGAATTGATCCTTGATG+TGG + chr4_2:54191038-54191057 Msa0607400:CDS 35.0%
ATGGCAATGAAGCTACAAAT+TGG + chr4_2:54191088-54191107 Msa0607400:CDS 35.0%
TGGCAATGAAGCTACAAATT+GGG + chr4_2:54191089-54191108 Msa0607400:CDS 35.0%
!! CATAGGGTGTCACATATTTT+TGG - chr4_2:54191116-54191135 None:intergenic 35.0%
TATTCGGCTTCATTGTCATT+AGG - chr4_2:54191186-54191205 None:intergenic 35.0%
CAACAAGGAAACAATGAAGT+TGG + chr4_2:54191414-54191433 Msa0607400:CDS 35.0%
AGCGTATACTGAGTCTAATT+GGG - chr4_2:54191460-54191479 None:intergenic 35.0%
TTGATCAATCACGTCAAGAA+TGG + chr4_2:54191594-54191613 Msa0607400:CDS 35.0%
TGATCAATCACGTCAAGAAT+GGG + chr4_2:54191595-54191614 Msa0607400:CDS 35.0%
! GAAGCAACTGAACAACATTT+TGG + chr4_2:54191687-54191706 Msa0607400:CDS 35.0%
ACACTTATGAGGTAGGTGTA+TGG - chr4_2:54188596-54188615 None:intergenic 40.0%
AATGCTCATTTGTGTCCTGA+AGG + chr4_2:54188735-54188754 Msa0607400:intron 40.0%
ACTTCTAAACTTGTGCCTTC+AGG - chr4_2:54188753-54188772 None:intergenic 40.0%
! GTCAATCGACATTTTGCTCA+AGG + chr4_2:54188981-54189000 Msa0607400:intron 40.0%
GTGAACTTAACTCAGTTGGT+AGG + chr4_2:54189279-54189298 Msa0607400:intron 40.0%
! ATTTGAAGTCCAGCTCACTT+TGG + chr4_2:54189384-54189403 Msa0607400:intron 40.0%
!! GTTTTTGTTTGGCCTATTGG+GGG - chr4_2:54189691-54189710 None:intergenic 40.0%
!! GGTTTTTGTTTGGCCTATTG+GGG - chr4_2:54189692-54189711 None:intergenic 40.0%
!! CGGTTTTTGTTTGGCCTATT+GGG - chr4_2:54189693-54189712 None:intergenic 40.0%
!! TCGGTTTTTGTTTGGCCTAT+TGG - chr4_2:54189694-54189713 None:intergenic 40.0%
ATTGTACACCCCATGCATTA+GGG + chr4_2:54190009-54190028 Msa0607400:intron 40.0%
! CCCATGCATTAGGGATATTT+TGG + chr4_2:54190018-54190037 Msa0607400:intron 40.0%
CACAAATAGAAGAGAGAGTG+TGG - chr4_2:54190060-54190079 None:intergenic 40.0%
CACTCTCTCTTCTATTTGTG+TGG + chr4_2:54190060-54190079 Msa0607400:intron 40.0%
CTCTCTCTTCTATTTGTGTG+GGG + chr4_2:54190062-54190081 Msa0607400:intron 40.0%
! CACGTGTCAGAATTTTGTGT+GGG + chr4_2:54190095-54190114 Msa0607400:intron 40.0%
TTTGGGCCCCAAAAAAATTG+AGG - chr4_2:54190267-54190286 None:intergenic 40.0%
TTCGTTGTGAGTGATGTTTG+TGG + chr4_2:54190576-54190595 Msa0607400:intron 40.0%
ACCATCAAGTCAAGAAGTTG+TGG + chr4_2:54190933-54190952 Msa0607400:CDS 40.0%
! TCCACAACTTCTTGACTTGA+TGG - chr4_2:54190937-54190956 None:intergenic 40.0%
AAGAGAAGAAAGGGTTTCCT+TGG - chr4_2:54191064-54191083 None:intergenic 40.0%
ACCCTTTCTTCTCTTACAGA+TGG + chr4_2:54191069-54191088 Msa0607400:CDS 40.0%
GCCATCTGTAAGAGAAGAAA+GGG - chr4_2:54191073-54191092 None:intergenic 40.0%
TGCCATCTGTAAGAGAAGAA+AGG - chr4_2:54191074-54191093 None:intergenic 40.0%
! TTGAATGTTTTGCATCGCAG+TGG - chr4_2:54191214-54191233 None:intergenic 40.0%
! ATTGGGCATCAAAGAGGTTT+TGG - chr4_2:54191443-54191462 None:intergenic 40.0%
AGTCTAATTGGGCATCAAAG+AGG - chr4_2:54191449-54191468 None:intergenic 40.0%
CAGCGTATACTGAGTCTAAT+TGG - chr4_2:54191461-54191480 None:intergenic 40.0%
GGACACAACTATCTTCACAT+CGG - chr4_2:54191505-54191524 None:intergenic 40.0%
!! TGTGGAAGCATTATCAGTTG+AGG - chr4_2:54191562-54191581 None:intergenic 40.0%
AAGTAAGTCTCAATAGCTCC+GGG - chr4_2:54191633-54191652 None:intergenic 40.0%
CAAGTAAGTCTCAATAGCTC+CGG - chr4_2:54191634-54191653 None:intergenic 40.0%
ACAGACCGATATGCACCAAA+CGG - chr4_2:54188224-54188243 None:intergenic 45.0%
ACACCTACCTCATAAGTGTG+AGG + chr4_2:54188597-54188616 Msa0607400:intron 45.0%
GTTACACATCCTTAAGGGTG+AGG - chr4_2:54188623-54188642 None:intergenic 45.0%
CCAACTGAGTTAAGTTCACG+AGG - chr4_2:54189278-54189297 None:intergenic 45.0%
CCTCGTGAACTTAACTCAGT+TGG + chr4_2:54189275-54189294 Msa0607400:intron 45.0%
AGTCCAGCTCACTTTGGATT+CGG + chr4_2:54189390-54189409 Msa0607400:intron 45.0%
TGGATTCGGAGTTCAAACCT+CGG + chr4_2:54189404-54189423 Msa0607400:intron 45.0%
AATGCATGGGGTGTACAATG+AGG - chr4_2:54190008-54190027 None:intergenic 45.0%
CATTGTACACCCCATGCATT+AGG + chr4_2:54190008-54190027 Msa0607400:intron 45.0%
CCACACAAAATTCTGACACG+TGG - chr4_2:54190097-54190116 None:intergenic 45.0%
! CCACGTGTCAGAATTTTGTG+TGG + chr4_2:54190094-54190113 Msa0607400:intron 45.0%
! TAAAGGGTGTATTGCCACGT+AGG + chr4_2:54190120-54190139 Msa0607400:intron 45.0%
! AAAGGGTGTATTGCCACGTA+GGG + chr4_2:54190121-54190140 Msa0607400:intron 45.0%
!!! ACACCGGGCCTCAATTTTTT+TGG + chr4_2:54190256-54190275 Msa0607400:intron 45.0%
!!! CACCGGGCCTCAATTTTTTT+GGG + chr4_2:54190257-54190276 Msa0607400:intron 45.0%
!!! ACCGGGCCTCAATTTTTTTG+GGG + chr4_2:54190258-54190277 Msa0607400:intron 45.0%
!! AATGGATTGCAGTGCATCAG+TGG + chr4_2:54190355-54190374 Msa0607400:intron 45.0%
TCTTAACAAATCCGTAGGCC+TGG - chr4_2:54190521-54190540 None:intergenic 45.0%
!! GGCCTACGGATTTGTTAAGA+CGG + chr4_2:54190521-54190540 Msa0607400:intron 45.0%
TTTGTTAAGACGGCCCTGTT+TGG + chr4_2:54190531-54190550 Msa0607400:intron 45.0%
GTACGCGTAAGGTAACAATG+CGG - chr4_2:54190799-54190818 None:intergenic 45.0%
ATGATGCACATGTACGCGTA+AGG - chr4_2:54190810-54190829 None:intergenic 45.0%
TACACAGTTGTGCAATCCGT+CGG + chr4_2:54190880-54190899 Msa0607400:intron 45.0%
CATTCCATAGCAAACTCCGA+CGG - chr4_2:54190899-54190918 None:intergenic 45.0%
!! GGAGTTTGCTATGGAATGCT+TGG + chr4_2:54190901-54190920 Msa0607400:CDS 45.0%
! GGAACCTTTAAGGGCTTGAA+GGG - chr4_2:54191016-54191035 None:intergenic 45.0%
! TGGAACCTTTAAGGGCTTGA+AGG - chr4_2:54191017-54191036 None:intergenic 45.0%
ATTGATCCTTGATGTGGCCA+AGG + chr4_2:54191044-54191063 Msa0607400:CDS 45.0%
CATCGCAGTGGCAATGTATT+CGG - chr4_2:54191202-54191221 None:intergenic 45.0%
GGATACACATTGGCAAGAAG+TGG - chr4_2:54191336-54191355 None:intergenic 45.0%
AGCGATGTACGGATACACAT+TGG - chr4_2:54191346-54191365 None:intergenic 45.0%
TACGCTGCTCTTGAGAAAGT+TGG + chr4_2:54191474-54191493 Msa0607400:CDS 45.0%
ACGCTGCTCTTGAGAAAGTT+GGG + chr4_2:54191475-54191494 Msa0607400:CDS 45.0%
AAGATAGTTGTGTCCGAGAG+TGG + chr4_2:54191510-54191529 Msa0607400:CDS 45.0%
!! GAAAAAAAATAAAATAAAAT+CGG - chr4_2:54189713-54189732 None:intergenic 5.0%
!!! AACAAAAAAAATAATATTTT+GGG - chr4_2:54190284-54190303 None:intergenic 5.0%
!!! AAACAAAAAAAATAATATTT+TGG - chr4_2:54190285-54190304 None:intergenic 5.0%
!!! TTTTTTTAATGTTTTTTTTT+TGG + chr4_2:54190455-54190474 Msa0607400:intron 5.0%
!!! TGTAAAAAAAATTAAATTTT+AGG - chr4_2:54190481-54190500 None:intergenic 5.0%
AGGCCTCACACTTATGAGGT+AGG - chr4_2:54188603-54188622 None:intergenic 50.0%
! CGTGCTAACTTGTGCCCTAA+AGG - chr4_2:54188891-54188910 None:intergenic 50.0%
GGGAATGCAAATTTCCGCAG+AGG + chr4_2:54189002-54189021 Msa0607400:intron 50.0%
ACTCCGAATCCAAAGTGAGC+TGG - chr4_2:54189396-54189415 None:intergenic 50.0%
ACGCTTGCTTGAGAGGTTGA+TGG - chr4_2:54189943-54189962 None:intergenic 50.0%
GGGGTGTACAATGAGGAGTA+TGG - chr4_2:54190001-54190020 None:intergenic 50.0%
CTTCTATTTGTGTGGGGTCC+AGG + chr4_2:54190068-54190087 Msa0607400:intron 50.0%
AATTCTGACACGTGGCAACC+TGG - chr4_2:54190089-54190108 None:intergenic 50.0%
GATACATGTACCACCCTACG+TGG - chr4_2:54190137-54190156 None:intergenic 50.0%
TACTTGTTTGGTACCAGGGC+CGG + chr4_2:54190206-54190225 Msa0607400:intron 50.0%
TGTCATAGCCCAGCTTCAAC+GGG - chr4_2:54190239-54190258 None:intergenic 50.0%
GTGTCATAGCCCAGCTTCAA+CGG - chr4_2:54190240-54190259 None:intergenic 50.0%
TTGAAGCTGGGCTATGACAC+CGG + chr4_2:54190240-54190259 Msa0607400:intron 50.0%
GCCCCAAAAAAATTGAGGCC+CGG - chr4_2:54190262-54190281 None:intergenic 50.0%
ATTGCAGTGCATCAGTGGCA+TGG + chr4_2:54190360-54190379 Msa0607400:intron 50.0%
GATTCATGATTCAGTGGGGG+TGG + chr4_2:54190392-54190411 Msa0607400:intron 50.0%
GGCCGTCTTAACAAATCCGT+AGG - chr4_2:54190526-54190545 None:intergenic 50.0%
CGTTTGCAACGACTCACACT+TGG + chr4_2:54190846-54190865 Msa0607400:intron 50.0%
!! CAATCCGTCGGAGTTTGCTA+TGG + chr4_2:54190892-54190911 Msa0607400:CDS 50.0%
! TTGAAGGGCTTGTTCGTCTG+GGG - chr4_2:54191001-54191020 None:intergenic 50.0%
! CTTGAAGGGCTTGTTCGTCT+GGG - chr4_2:54191002-54191021 None:intergenic 50.0%
CAAGCCCTTCAAGCCCTTAA+AGG + chr4_2:54191009-54191028 Msa0607400:CDS 50.0%
GTGGCGCTCCATTGTTCTTT+AGG - chr4_2:54191317-54191336 None:intergenic 50.0%
CGCTGCTCTTGAGAAAGTTG+GGG + chr4_2:54191476-54191495 Msa0607400:CDS 50.0%
GCTGCTCTTGAGAAAGTTGG+GGG + chr4_2:54191477-54191496 Msa0607400:CDS 50.0%
TAGTTGTGTCCGAGAGTGGA+TGG + chr4_2:54191514-54191533 Msa0607400:CDS 50.0%
AATGGGACTCCTAAGAGACC+CGG + chr4_2:54191612-54191631 Msa0607400:CDS 50.0%
TCAATAGCTCCGGGTCTCTT+AGG - chr4_2:54191624-54191643 None:intergenic 50.0%
GGTGAGGCCTCACACTTATG+AGG - chr4_2:54188607-54188626 None:intergenic 55.0%
AGTGTGAGGCCTCACCCTTA+AGG + chr4_2:54188611-54188630 Msa0607400:intron 55.0%
ACTTGTTTGGTACCAGGGCC+GGG + chr4_2:54190207-54190226 Msa0607400:intron 55.0%
TGAAGCTGGGCTATGACACC+GGG + chr4_2:54190241-54190260 Msa0607400:intron 55.0%
TGATTCAGTGGGGGTGGTCA+TGG + chr4_2:54190398-54190417 Msa0607400:intron 55.0%
GATTCAGTGGGGGTGGTCAT+GGG + chr4_2:54190399-54190418 Msa0607400:intron 55.0%
! GCTTGAAGGGCTTGTTCGTC+TGG - chr4_2:54191003-54191022 None:intergenic 55.0%
GGGTTTCCTTGGCCACATCA+AGG - chr4_2:54191053-54191072 None:intergenic 55.0%
TTCCGATGGCCATCCACTCT+CGG - chr4_2:54191526-54191545 None:intergenic 55.0%
CGTTAACCCGTGCGAACGCA+CGG + chr4_2:54188555-54188574 Msa0607400:intron 60.0%
GTTAACCCGTGCGAACGCAC+GGG + chr4_2:54188556-54188575 Msa0607400:intron 60.0%
TAACACCCGTGCGTTCGCAC+GGG - chr4_2:54188564-54188583 None:intergenic 60.0%
GTAACACCCGTGCGTTCGCA+CGG - chr4_2:54188565-54188584 None:intergenic 60.0%
GGGTGTATTGCCACGTAGGG+TGG + chr4_2:54190124-54190143 Msa0607400:intron 60.0%
!! AGCTTCAACGGGCTATGGCC+CGG - chr4_2:54190228-54190247 None:intergenic 60.0%
GGCCATAGCCCGTTGAAGCT+GGG + chr4_2:54190228-54190247 Msa0607400:intron 60.0%
!! AGCCCAGCTTCAACGGGCTA+TGG - chr4_2:54190233-54190252 None:intergenic 60.0%
GTCCGAGAGTGGATGGCCAT+CGG + chr4_2:54191521-54191540 Msa0607400:CDS 60.0%
GAGAGTGGATGGCCATCGGA+AGG + chr4_2:54191525-54191544 Msa0607400:CDS 60.0%
AGTGGATGGCCATCGGAAGG+CGG + chr4_2:54191528-54191547 Msa0607400:CDS 60.0%
GGGCCATAGCCCGTTGAAGC+TGG + chr4_2:54190227-54190246 Msa0607400:intron 65.0%
GTGGATGGCCATCGGAAGGC+GGG + chr4_2:54191529-54191548 Msa0607400:CDS 65.0%
TGGATGGCCATCGGAAGGCG+GGG + chr4_2:54191530-54191549 Msa0607400:CDS 65.0%
GCACTATCCCCGCCTTCCGA+TGG - chr4_2:54191540-54191559 None:intergenic 65.0%
!! AACGGGCTATGGCCCGGCCC+TGG - chr4_2:54190222-54190241 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 54188200 54191931 54188200 ID=Msa0607400;Name=Msa0607400
chr4_2 mRNA 54188200 54191931 54188200 ID=Msa0607400-mRNA-1;Parent=Msa0607400;Name=Msa0607400-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0.5|0.5|0|0.5|2|173|291
chr4_2 exon 54188200 54188203 54188200 ID=Msa0607400-mRNA-1:exon:13550;Parent=Msa0607400-mRNA-1
chr4_2 exon 54190887 54191931 54190887 ID=Msa0607400-mRNA-1:exon:13551;Parent=Msa0607400-mRNA-1
chr4_2 CDS 54188200 54188203 54188200 ID=Msa0607400-mRNA-1:cds;Parent=Msa0607400-mRNA-1
chr4_2 CDS 54190887 54191758 54190887 ID=Msa0607400-mRNA-1:cds;Parent=Msa0607400-mRNA-1
chr4_2 three_prime_UTR 54191759 54191931 54191759 ID=Msa0607400-mRNA-1:three_prime_utr;Parent=Msa0607400-mRNA-1
Gene Sequence

>Msa0607400

ATGTTTGTGCAATCCGTCGGAGTTTGCTATGGAATGCTTGGCGATAATCTACCATCAAGTCAAGAAGTTGTGGATTTATATAAGTCAAATGGCATTGACAAAATGCGTATATACTCCCCAGACGAACAAGCCCTTCAAGCCCTTAAAGGTTCCAACATAGAATTGATCCTTGATGTGGCCAAGGAAACCCTTTCTTCTCTTACAGATGGCAATGAAGCTACAAATTGGGTCCAAAAATATGTGACACCCTATGCTCAAGATGTAAAAATCAAGTACATCAGTGTTGGAAATGAAATTAAACCTAATGACAATGAAGCCGAATACATTGCCACTGCGATGCAAAACATTCAAAATGCAATTTCATCAGCAAATTTACAAGGACAAATCAAGGTCTCAACAGCAAAACAATATTTACAACCAATAATAGACTTCCTAAAGAACAATGGAGCGCCACTTCTTGCCAATGTGTATCCGTACATCGCTTATAAAGATAATAAACAAAGCATTTCTCTTGACTATGCTCTTTTTAAACAACAAGGAAACAATGAAGTTGGGTACCAAAACCTCTTTGATGCCCAATTAGACTCAGTATACGCTGCTCTTGAGAAAGTTGGGGGTTCCGATGTGAAGATAGTTGTGTCCGAGAGTGGATGGCCATCGGAAGGCGGGGATAGTGCCTCAACTGATAATGCTTCCACATATTATCAAAATTTGATCAATCACGTCAAGAATGGGACTCCTAAGAGACCCGGAGCTATTGAGACTTACTTGTTTGCCATGTTTGATGAAAATCAGAAGAATGGTGAAGCAACTGAACAACATTTTGGTCTCTTTAATCCTGACAAATCATCTAAATATCAAACAAGTTTCAATTGA
Protein sequence

>Msa0607400

MFVQSVGVCYGMLGDNLPSSQEVVDLYKSNGIDKMRIYSPDEQALQALKGSNIELILDVAKETLSSLTDGNEATNWVQKYVTPYAQDVKIKYISVGNEIKPNDNEAEYIATAMQNIQNAISSANLQGQIKVSTAKQYLQPIIDFLKNNGAPLLANVYPYIAYKDNKQSISLDYALFKQQGNNEVGYQNLFDAQLDSVYAALEKVGGSDVKIVVSESGWPSEGGDSASTDNASTYYQNLINHVKNGTPKRPGAIETYLFAMFDENQKNGEATEQHFGLFNPDKSSKYQTSFN*