AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0553290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553290 MtrunA17_Chr4g0038981 97.872 329 7 0 1 329 1 329 0.0 654
Msa0553290 MtrunA17_Chr4g0038961 85.714 329 47 0 1 329 1 329 0.0 582
Msa0553290 MtrunA17_Chr4g0038971 84.498 329 51 0 1 329 1 329 0.0 581
Msa0553290 MtrunA17_Chr4g0039011 81.556 347 44 3 1 327 1 347 0.0 566
Msa0553290 MtrunA17_Chr4g0038941 70.253 316 92 2 15 329 44 358 4.90e-159 448
Msa0553290 MtrunA17_Chr4g0039021 63.481 293 101 5 43 329 1 293 2.76e-125 360
Msa0553290 MtrunA17_Chr4g0039071 57.051 312 127 4 21 325 23 334 7.67e-125 362
Msa0553290 MtrunA17_Chr2g0294601 53.916 332 144 4 5 328 41 371 8.54e-120 350
Msa0553290 MtrunA17_Chr2g0294591 52.000 325 146 5 12 328 20 342 3.85e-110 325
Msa0553290 MtrunA17_Chr1g0174261 55.477 283 119 4 52 327 1 283 1.77e-103 307
Msa0553290 MtrunA17_Chr7g0250301 43.671 316 167 8 17 324 2 314 2.89e-83 254
Msa0553290 MtrunA17_Chr5g0439251 42.902 317 165 9 23 324 25 340 4.37e-78 246
Msa0553290 MtrunA17_Chr3g0119541 41.433 321 174 8 22 328 25 345 6.68e-76 237
Msa0553290 MtrunA17_Chr4g0026321 38.801 317 179 6 22 324 28 343 7.89e-73 230
Msa0553290 MtrunA17_Chr2g0321511 37.730 326 182 7 12 324 24 341 1.83e-71 226
Msa0553290 MtrunA17_Chr8g0389741 36.677 319 189 6 23 328 28 346 3.83e-71 229
Msa0553290 MtrunA17_Chr4g0034901 39.286 336 189 8 4 324 9 344 5.28e-71 228
Msa0553290 MtrunA17_Chr4g0003281 38.081 344 194 7 4 328 16 359 1.21e-69 222
Msa0553290 MtrunA17_Chr6g0487261 34.604 341 210 6 1 328 5 345 1.24e-69 225
Msa0553290 MtrunA17_Chr4g0043851 38.941 321 183 7 17 324 26 346 3.02e-69 221
Msa0553290 MtrunA17_Chr3g0144531 38.095 336 193 8 4 324 8 343 4.93e-69 222
Msa0553290 MtrunA17_Chr7g0250321 42.349 281 154 6 2 277 8 285 4.47e-68 214
Msa0553290 MtrunA17_Chr1g0146831 38.580 324 178 9 17 324 25 343 1.43e-67 216
Msa0553290 MtrunA17_Chr1g0189111 38.580 324 187 8 18 329 26 349 2.91e-67 216
Msa0553290 MtrunA17_Chr1g0177171 38.801 317 180 7 22 324 37 353 4.67e-67 218
Msa0553290 MtrunA17_Chr4g0064021 35.625 320 192 7 24 329 27 346 1.25e-66 214
Msa0553290 MtrunA17_Chr1g0155001 39.117 317 178 8 23 324 24 340 9.06e-66 213
Msa0553290 MtrunA17_Chr1g0161011 37.082 329 191 6 4 316 5 333 1.20e-64 212
Msa0553290 MtrunA17_Chr2g0285901 36.607 336 195 8 6 324 3 337 7.82e-63 204
Msa0553290 MtrunA17_Chr7g0234821 35.514 321 184 10 24 324 27 344 1.44e-62 206
Msa0553290 MtrunA17_Chr7g0223961 37.152 323 184 10 18 326 18 335 4.69e-62 204
Msa0553290 MtrunA17_Chr3g0110371 36.202 337 192 8 1 317 1 334 3.88e-61 202
Msa0553290 MtrunA17_Chr8g0339191 33.908 348 202 10 1 325 6 348 1.97e-60 200
Msa0553290 MtrunA17_Chr5g0434591 35.370 311 185 6 23 317 23 333 1.34e-58 196
Msa0553290 MtrunA17_Chr7g0253091 34.125 337 203 9 4 324 9 342 5.28e-57 191
Msa0553290 MtrunA17_Chr4g0046311 32.919 322 195 8 23 324 23 343 1.91e-56 190
Msa0553290 MtrunA17_Chr8g0383311 34.154 325 198 8 20 329 40 363 2.31e-56 190
Msa0553290 MtrunA17_Chr3g0121271 33.333 324 199 7 23 329 26 349 8.24e-55 186
Msa0553290 MtrunA17_Chr6g0461601 34.049 326 196 8 17 324 20 344 1.34e-54 185
Msa0553290 MtrunA17_Chr4g0062771 33.524 349 197 11 1 325 12 349 3.29e-54 184
Msa0553290 MtrunA17_Chr4g0075031 32.704 318 198 6 23 324 45 362 3.11e-51 177
Msa0553290 MtrunA17_Chr8g0378621 30.321 343 219 7 2 328 9 347 2.21e-49 172
Msa0553290 MtrunA17_Chr3g0129341 32.164 342 214 10 3 329 14 352 4.34e-49 171
Msa0553290 MtrunA17_Chr4g0069801 31.629 313 198 8 27 324 32 343 2.08e-46 164
Msa0553290 MtrunA17_Chr4g0043511 34.069 317 191 10 23 324 62 375 2.94e-46 164
Msa0553290 MtrunA17_Chr3g0105981 32.609 322 201 11 18 325 22 341 4.43e-46 161
Msa0553290 MtrunA17_Chr3g0138741 33.232 328 201 10 14 325 22 347 4.56e-45 160
Msa0553290 MtrunA17_Chr2g0290821 32.609 322 195 10 22 324 27 345 5.61e-45 160
Msa0553290 MtrunA17_Chr2g0306311 29.565 345 201 9 23 325 30 374 2.26e-43 156
Msa0553290 MtrunA17_Chr1g0148391 32.817 323 201 9 20 327 23 344 9.09e-43 154
Msa0553290 MtrunA17_Chr4g0076581 31.858 339 206 12 7 324 14 348 2.72e-42 152
Msa0553290 MtrunA17_Chr2g0294581 41.935 186 92 6 12 190 66 242 1.15e-35 130
Msa0553290 MtrunA17_Chr2g0294581 52.525 99 44 3 232 328 187 284 4.77e-26 105
Msa0553290 MtrunA17_Chr5g0436361 28.866 291 187 11 49 324 63 348 1.87e-31 121
Msa0553290 MtrunA17_Chr4g0018861 61.364 88 33 1 241 327 87 174 2.36e-31 117
Msa0553290 MtrunA17_Chr4g0018861 51.136 88 38 2 1 86 1 85 1.78e-22 93.6
Msa0553290 MtrunA17_Chr4g0018771 58.242 91 37 1 238 327 86 176 4.55e-31 116
Msa0553290 MtrunA17_Chr4g0018771 54.545 66 30 0 21 86 24 89 7.38e-20 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0553290 AT4G16260.1 49.702 336 159 6 1 328 1 334 1.20e-112 330
Msa0553290 AT3G57260.1 52.252 333 147 8 3 329 13 339 2.10e-110 325
Msa0553290 AT3G57260.2 52.252 333 147 8 3 329 29 355 2.56e-110 325
Msa0553290 AT3G57270.1 50.479 313 148 4 23 328 27 339 9.44e-105 310
Msa0553290 AT4G16260.2 50.163 307 144 5 29 328 1 305 6.60e-104 307
Msa0553290 AT3G57240.1 50.625 320 142 7 18 329 30 341 6.92e-104 308
Msa0553290 AT5G20390.1 42.671 307 162 9 22 318 32 334 1.04e-76 239
Msa0553290 AT4G26830.1 41.379 319 174 7 23 328 25 343 3.09e-76 241
Msa0553290 AT4G26830.2 41.379 319 174 7 23 328 29 347 4.16e-76 241
Msa0553290 AT5G20340.1 41.883 308 165 9 22 319 42 345 7.22e-76 237
Msa0553290 AT5G56590.1 38.318 321 183 6 23 328 26 346 8.49e-76 241
Msa0553290 AT1G77790.1 40.385 312 172 8 24 324 31 339 9.14e-74 231
Msa0553290 AT2G05790.1 39.564 321 180 7 22 328 24 344 2.76e-73 234
Msa0553290 AT4G18340.2 37.758 339 198 6 4 329 15 353 1.07e-72 230
Msa0553290 AT5G20330.1 40.836 311 170 9 18 318 29 335 1.07e-72 229
Msa0553290 AT4G18340.1 37.758 339 198 6 4 329 15 353 1.23e-72 230
Msa0553290 AT5G55180.2 39.039 333 185 10 14 329 16 347 2.60e-72 231
Msa0553290 AT5G55180.1 39.039 333 185 10 14 329 16 347 2.84e-72 231
Msa0553290 AT2G16230.1 40.823 316 173 7 23 324 25 340 1.40e-71 230
Msa0553290 AT5G42100.2 41.304 322 173 7 19 324 23 344 3.77e-71 227
Msa0553290 AT5G42100.1 41.304 322 173 7 19 324 23 344 4.77e-71 227
Msa0553290 AT1G32860.1 38.199 322 184 7 22 328 28 349 2.27e-70 225
Msa0553290 AT1G33220.1 40.523 306 168 9 22 316 33 335 1.09e-69 221
Msa0553290 AT1G30080.2 37.574 338 196 8 2 324 13 350 1.52e-68 219
Msa0553290 AT1G30080.1 37.574 338 196 8 2 324 13 350 2.35e-68 219
Msa0553290 AT2G27500.2 36.164 318 189 8 21 324 27 344 4.73e-67 215
Msa0553290 AT5G42720.1 38.053 339 194 9 2 324 4 342 5.38e-67 217
Msa0553290 AT2G27500.1 36.164 318 189 8 21 324 27 344 6.16e-67 215
Msa0553290 AT4G34480.2 40.533 338 186 8 1 324 5 341 6.82e-67 214
Msa0553290 AT2G01630.2 38.710 310 174 6 23 316 23 332 1.17e-66 214
Msa0553290 AT2G01630.3 39.032 310 173 7 23 316 23 332 5.15e-66 214
Msa0553290 AT2G26600.1 34.259 324 199 8 20 329 31 354 1.14e-65 212
Msa0553290 AT2G01630.1 39.032 310 173 7 23 316 23 332 2.89e-65 214
Msa0553290 AT4G34480.1 40.533 338 186 8 1 324 5 341 4.35e-65 213
Msa0553290 AT5G24318.4 36.795 337 191 10 4 324 12 342 1.22e-64 209
Msa0553290 AT1G77780.1 35.030 334 200 10 4 324 1 330 2.65e-64 207
Msa0553290 AT5G24318.2 36.795 337 191 10 4 324 12 342 2.44e-63 207
Msa0553290 AT3G15800.1 36.061 330 196 7 10 324 30 359 4.07e-63 206
Msa0553290 AT5G24318.1 36.795 337 191 10 4 324 12 342 4.59e-63 207
Msa0553290 AT3G61810.1 33.851 322 194 6 23 329 55 372 6.26e-61 199
Msa0553290 AT5G20560.1 36.774 310 175 9 23 318 34 336 2.53e-60 196
Msa0553290 AT4G29360.1 34.218 339 209 7 3 328 8 345 6.96e-60 201
Msa0553290 AT4G29360.2 34.557 327 201 6 15 328 29 355 1.90e-58 197
Msa0553290 AT3G07320.1 33.856 319 192 8 24 324 26 343 2.37e-58 195
Msa0553290 AT1G66250.1 35.535 318 188 7 23 324 32 348 1.82e-56 191
Msa0553290 AT4G14080.1 32.722 327 202 8 19 328 38 363 1.46e-55 188
Msa0553290 AT3G23770.1 33.535 331 201 8 17 328 31 361 5.85e-55 186
Msa0553290 AT2G27500.3 37.549 253 145 7 85 324 14 266 1.98e-54 181
Msa0553290 AT5G18220.1 33.134 335 206 8 4 324 13 343 4.70e-54 184
Msa0553290 AT2G19440.2 33.038 339 209 9 1 324 1 336 1.07e-53 183
Msa0553290 AT2G19440.1 33.038 339 209 9 1 324 1 336 1.07e-53 183
Msa0553290 AT2G26600.2 34.496 258 156 6 85 329 3 260 9.94e-53 176
Msa0553290 AT1G11820.1 31.613 310 196 6 23 316 44 353 9.70e-52 176
Msa0553290 AT3G13560.4 32.075 318 200 6 23 324 26 343 1.32e-51 178
Msa0553290 AT3G13560.1 32.075 318 200 6 23 324 26 343 1.32e-51 178
Msa0553290 AT3G13560.2 32.075 318 200 6 23 324 26 343 1.32e-51 178
Msa0553290 AT3G13560.5 32.075 318 200 6 23 324 26 343 1.32e-51 178
Msa0553290 AT3G13560.3 32.075 318 200 6 23 324 26 343 1.32e-51 178
Msa0553290 AT1G64760.1 32.743 339 211 9 2 324 3 340 1.51e-51 177
Msa0553290 AT1G64760.2 32.743 339 211 9 2 324 3 340 1.51e-51 177
Msa0553290 AT1G11820.3 31.613 310 196 6 23 316 44 353 1.37e-50 175
Msa0553290 AT3G46570.1 35.119 336 188 13 10 324 14 340 2.17e-50 171
Msa0553290 AT1G11820.2 31.613 310 196 6 23 316 44 353 2.99e-50 174
Msa0553290 AT5G58480.1 33.731 335 200 12 13 329 16 346 3.86e-50 174
Msa0553290 AT5G58090.1 34.277 318 193 9 22 324 21 337 4.06e-50 174
Msa0553290 AT3G55430.1 33.333 321 193 11 19 324 25 339 1.80e-48 169
Msa0553290 AT4G31140.1 32.647 340 212 11 4 328 9 346 1.24e-47 167
Msa0553290 AT3G04010.1 32.070 343 208 10 3 328 18 352 1.67e-47 167
Msa0553290 AT2G39640.1 33.535 331 203 10 5 324 12 336 5.76e-47 166
Msa0553290 AT3G24330.1 32.249 338 209 11 5 325 23 357 6.39e-47 166
Msa0553290 AT5G64790.1 30.539 334 216 9 10 328 15 347 1.19e-44 159
Msa0553290 AT4G34480.3 43.421 228 116 6 110 324 3 230 2.75e-44 156
Msa0553290 AT4G17180.1 31.366 322 200 9 19 325 21 336 1.48e-43 156
Msa0553290 AT5G24318.3 39.904 208 107 7 130 324 1 203 2.63e-40 144
Msa0553290 AT5G20870.1 30.990 313 189 11 40 328 47 356 2.54e-39 145
Msa0553290 AT3G55780.1 26.923 312 205 11 36 329 48 354 3.03e-34 129

Find 95 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTATGTTGGAACCTTTA+AGG 0.089668 4_1:-50240219 None:intergenic
TATTATTATGCATATAAATA+TGG 0.212598 4_1:+50234024 Msa0553290:five_prime_UTR
CAAGCCCTTCAAGCCCTTAA+AGG 0.219614 4_1:+50240205 Msa0553290:CDS
GCTTGAAGGGCTTGTTCGTC+TGG 0.228164 4_1:-50240196 None:intergenic
TTCTTTAGGAAGTCTATTAT+TGG 0.255166 4_1:-50240559 None:intergenic
GCAGCAACCGAACAACATTT+TGG 0.258550 4_1:+50240946 Msa0553290:CDS
TCCATTGGACTAAAATTTAC+AGG 0.273977 4_1:+50234187 Msa0553290:CDS
TTCTATGTTGGAACCTTTAA+GGG 0.304709 4_1:-50240218 None:intergenic
GGGCTCAGAGTCTTCCTTAT+TGG 0.315641 4_1:+50233956 Msa0553290:five_prime_UTR
CATGGCAGTGGCAATGTATT+GGG 0.316261 4_1:-50240395 None:intergenic
CTATTCCTTGTACTAATTGC+AGG 0.317744 4_1:-50233987 None:intergenic
TCCACAACTTCTTGACTTGA+TGG 0.320456 4_1:-50240130 None:intergenic
TCAATAGCTCCAGGTCTCTT+AGG 0.321509 4_1:-50240880 None:intergenic
ATGGCAATGAAGCTACAAAT+TGG 0.321660 4_1:+50240284 Msa0553290:CDS
CCGCATATACCGAGTCTAAC+TGG 0.321766 4_1:-50240717 None:intergenic
TATTGGGCTTCATTGTCATT+AGG 0.337583 4_1:-50240379 None:intergenic
ACTGGGCATCAAAGAGGTTT+TGG 0.338461 4_1:-50240699 None:intergenic
GTGGTGCTCCATTGTTCTTT+AGG 0.350917 4_1:-50240573 None:intergenic
GCAATTGACATGACTTTGAT+TGG 0.370164 4_1:+50240478 Msa0553290:CDS
TATATACTTGGTTTATACTT+TGG 0.378699 4_1:+50234080 Msa0553290:five_prime_UTR
TTGCTGTTGAGACCTTGATT+TGG 0.384562 4_1:-50240459 None:intergenic
TGCAGGGTGATCCTCCAATA+AGG 0.392171 4_1:-50233970 None:intergenic
TTGATTAATCACGTCAAGAA+TGG 0.394189 4_1:+50240853 Msa0553290:CDS
GCATGGCAGTGGCAATGTAT+TGG 0.397820 4_1:-50240396 None:intergenic
TGATATTTAGATGATTTGTC+AGG 0.399073 4_1:-50240979 None:intergenic
ATGCGGCTCTTGAGAAAGTT+GGG 0.402933 4_1:+50240734 Msa0553290:CDS
CTTGAAGGGCTTGTTCGTCT+GGG 0.403107 4_1:-50240195 None:intergenic
TATCCATACTTCGCTTATAT+CGG 0.412913 4_1:+50240610 Msa0553290:CDS
TTACCGATATAAGCGAAGTA+TGG 0.415976 4_1:-50240613 None:intergenic
CTCAGAGTCTTCCTTATTGG+AGG 0.441169 4_1:+50233959 Msa0553290:five_prime_UTR
TGGAACCTTTAAGGGCTTGA+AGG 0.446944 4_1:-50240210 None:intergenic
AAAGAGACCAAAATGTTGTT+CGG 0.456281 4_1:-50240953 None:intergenic
ATCAAAGCTGCATATATACT+TGG 0.465869 4_1:+50234068 Msa0553290:five_prime_UTR
GCCATCTGTAAGAGAAGAAA+GGG 0.468174 4_1:-50240266 None:intergenic
TCAAAGGAAAATTAATGCTA+TGG 0.473337 4_1:-50233923 None:intergenic
TATGCGGCTCTTGAGAAAGT+TGG 0.477765 4_1:+50240733 Msa0553290:CDS
GTGGATTTATACAAGTCAAA+TGG 0.478333 4_1:+50240148 Msa0553290:CDS
CAACAAGGAAACAATGATGT+TGG 0.478493 4_1:+50240673 Msa0553290:CDS
AAGAGAAGAAAGGGTTTCCT+TGG 0.481114 4_1:-50240257 None:intergenic
ATTTCATCAGCAAGTTTACA+AGG 0.485536 4_1:+50240436 Msa0553290:CDS
TGATTAATCACGTCAAGAAT+GGG 0.486109 4_1:+50240854 Msa0553290:CDS
GCATATAAATATGGACTAGC+AGG 0.489578 4_1:+50234033 Msa0553290:five_prime_UTR
AACAAGGAAACAATGATGTT+GGG 0.493013 4_1:+50240674 Msa0553290:CDS
CTTGTTGGTATACTGTCCAT+TGG 0.493070 4_1:+50234172 Msa0553290:CDS
TCAGTGAAAACACCATCATT+AGG 0.495646 4_1:-50240514 None:intergenic
TGGCAATGAAGCTACAAATT+GGG 0.496926 4_1:+50240285 Msa0553290:CDS
GGAGTTTGCTATGGAATGCT+TGG 0.503294 4_1:+50240097 Msa0553290:CDS
AAAATCAAGTACATCACTGT+TGG 0.508377 4_1:+50240343 Msa0553290:CDS
TGCCATCTGTAAGAGAAGAA+AGG 0.516666 4_1:-50240267 None:intergenic
CGCATATACCGAGTCTAACT+GGG 0.519959 4_1:-50240716 None:intergenic
GGAACCTTTAAGGGCTTGAA+GGG 0.527762 4_1:-50240209 None:intergenic
ACCCTTTCTTCTCTTACAGA+TGG 0.527847 4_1:+50240265 Msa0553290:CDS
AAGTAAGTCTCAATAGCTCC+AGG 0.534921 4_1:-50240889 None:intergenic
TACTATGAATAATTGTGCCA+TGG 0.537682 4_1:+50241060 Msa0553290:three_prime_UTR
ACCATCAAGTCAAGAAGTTG+TGG 0.540439 4_1:+50240129 Msa0553290:CDS
GGAAATAACATGTGCACCCA+TGG 0.541357 4_1:-50241077 None:intergenic
AATTCATATCCACCTAATGA+TGG 0.542843 4_1:+50240502 Msa0553290:CDS
AATCAAATTAGTATAATATG+TGG 0.545267 4_1:-50240836 None:intergenic
TTGAAGGGCTTGTTCGTCTG+GGG 0.546385 4_1:-50240194 None:intergenic
ATCAAGGATCAATTCTATGT+TGG 0.547280 4_1:-50240230 None:intergenic
ATCAGATGGCCATCCACTCT+CGG 0.548201 4_1:-50240782 None:intergenic
ATTGATCCTTGATGTGGCCA+AGG 0.559139 4_1:+50240240 Msa0553290:CDS
ATTAGTACAAGGAATAGTAT+TGG 0.561193 4_1:+50233993 Msa0553290:five_prime_UTR
AAGTTTACAAGGCCAAATCA+AGG 0.562685 4_1:+50240447 Msa0553290:CDS
TATTCCTTGTACTAATTGCA+GGG 0.564647 4_1:-50233986 None:intergenic
GGGTTTCCTTGGCCACATCA+AGG 0.566068 4_1:-50240246 None:intergenic
CTTTGATGCCCAGTTAGACT+CGG 0.571891 4_1:+50240708 Msa0553290:CDS
GATATTTAGATGATTTGTCA+GGG 0.572786 4_1:-50240978 None:intergenic
TAGTTGTGTCCGAGAGTGGA+TGG 0.576028 4_1:+50240773 Msa0553290:CDS
TTTGATGAAAATCAGAAGAC+TGG 0.578091 4_1:+50240922 Msa0553290:CDS
ACTATGAATAATTGTGCCAT+GGG 0.581902 4_1:+50241061 Msa0553290:three_prime_UTR
TGCGGCTCTTGAGAAAGTTG+GGG 0.586062 4_1:+50240735 Msa0553290:CDS
AAGATAGTTGTGTCCGAGAG+TGG 0.586296 4_1:+50240769 Msa0553290:CDS
ATAGACTTCCTAAAGAACAA+TGG 0.595560 4_1:+50240565 Msa0553290:CDS
GAGCCCCGTCAATCACTCAA+AGG 0.596330 4_1:-50233939 None:intergenic
ACATTACATACATAGAAAGA+TGG 0.602724 4_1:-50241098 None:intergenic
ATCACCCTGCAATTAGTACA+AGG 0.605090 4_1:+50233982 Msa0553290:five_prime_UTR
GCACTATCTCCACCATCAGA+TGG 0.608276 4_1:-50240796 None:intergenic
CAATCCGTAGGAGTTTGCTA+TGG 0.608807 4_1:+50240088 Msa0553290:CDS
GAGAGTGGATGGCCATCTGA+TGG 0.610447 4_1:+50240784 Msa0553290:CDS
GGATACACATTAGCAAGAAG+TGG 0.612943 4_1:-50240592 None:intergenic
AATGGGACTCCTAAGAGACC+TGG 0.613801 4_1:+50240871 Msa0553290:CDS
CAAACTAAAATATAATGCAA+TGG 0.619199 4_1:-50241170 None:intergenic
TACGCAGTTGTGCAATCCGT+AGG 0.619675 4_1:+50240076 Msa0553290:intron
TATAAATATGGACTAGCAGG+TGG 0.619782 4_1:+50234036 Msa0553290:five_prime_UTR
CATAGAATTGATCCTTGATG+TGG 0.622652 4_1:+50240234 Msa0553290:CDS
AGTCTAACTGGGCATCAAAG+AGG 0.625012 4_1:-50240705 None:intergenic
CATTCCATAGCAAACTCCTA+CGG 0.625812 4_1:-50240092 None:intergenic
CCAGTTAGACTCGGTATATG+CGG 0.629503 4_1:+50240717 Msa0553290:CDS
TGTGGAAGCATTGTCAGTTG+AGG 0.652637 4_1:-50240818 None:intergenic
GTGAAAACACCATCATTAGG+TGG 0.653737 4_1:-50240511 None:intergenic
AGTGGATGGCCATCTGATGG+TGG 0.674681 4_1:+50240787 Msa0553290:CDS
GCGGCTCTTGAGAAAGTTGG+GGG 0.680343 4_1:+50240736 Msa0553290:CDS
GGACACAACTATCTTCACAT+CGG 0.708430 4_1:-50240761 None:intergenic
TTTCCTTTGAGTGATTGACG+GGG 0.765605 4_1:+50233936 Msa0553290:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATATAAAATATTT+AGG + chr4_1:50235091-50235110 Msa0553290:intron 0.0%
!! TATTATTATGCATATAAATA+TGG + chr4_1:50234024-50234043 Msa0553290:five_prime_UTR 10.0%
!!! GTTTATATATTTTTATATGT+TGG + chr4_1:50234286-50234305 Msa0553290:intron 10.0%
!!! TATATTTTTATTAACTTACT+TGG - chr4_1:50235083-50235102 None:intergenic 10.0%
!! AAAACAAATAGAAATAAAAA+TGG - chr4_1:50236049-50236068 None:intergenic 10.0%
!!! TATTTTTTTTAGAGAAATAT+AGG + chr4_1:50236161-50236180 Msa0553290:intron 10.0%
!!! ATTTTTTTTAGAGAAATATA+GGG + chr4_1:50236162-50236181 Msa0553290:intron 10.0%
!!! ACTATAAATTTTAAAGTTAT+AGG - chr4_1:50236188-50236207 None:intergenic 10.0%
!!! ATTCAATTCAAAATTTTTAT+AGG + chr4_1:50236355-50236374 Msa0553290:intron 10.0%
!!! TTCAATTCAAAATTTTTATA+GGG + chr4_1:50236356-50236375 Msa0553290:intron 10.0%
!!! ATTTTTGATAAAATATTATG+GGG - chr4_1:50236434-50236453 None:intergenic 10.0%
!!! TTGTTTTTATTATTTTCAAT+AGG - chr4_1:50236729-50236748 None:intergenic 10.0%
!!! AATTATTTTTTTTGAAGAAT+TGG - chr4_1:50238096-50238115 None:intergenic 10.0%
!!! TATTTTTTTAATATTTGTGA+TGG - chr4_1:50239074-50239093 None:intergenic 10.0%
!! AAATCAAAAAAAAAAATTAC+CGG - chr4_1:50239370-50239389 None:intergenic 10.0%
!!! AAAACAATTTTTTTTTACAA+GGG - chr4_1:50239397-50239416 None:intergenic 10.0%
!! GTAAATAAAAAAAAAATTAC+AGG + chr4_1:50239528-50239547 Msa0553290:intron 10.0%
!!! AGTTTAAAATAAATTAAAGT+AGG - chr4_1:50239957-50239976 None:intergenic 10.0%
!!! GGTATATATAAATTTTTGAA+AGG + chr4_1:50234563-50234582 Msa0553290:intron 15.0%
!!! CTAATTTTTTTTGTTTTTGA+CGG + chr4_1:50234602-50234621 Msa0553290:intron 15.0%
!! TTTAGTAAATTTACTGAATA+TGG - chr4_1:50234696-50234715 None:intergenic 15.0%
!! TAAAAAAACAAAAATTAACG+AGG + chr4_1:50234712-50234731 Msa0553290:intron 15.0%
!! AAAAAAGCTTCATTATTATA+AGG - chr4_1:50235034-50235053 None:intergenic 15.0%
!!! ATAATGAAGCTTTTTTTTTT+TGG + chr4_1:50235038-50235057 Msa0553290:intron 15.0%
!! TTATATATGAAAAGCTTAAT+AGG - chr4_1:50235430-50235449 None:intergenic 15.0%
!! AACTTCAAAAATATCAATAA+TGG - chr4_1:50235461-50235480 None:intergenic 15.0%
!!! ACTTTTTTTTTTTTTTGTGA+TGG - chr4_1:50235954-50235973 None:intergenic 15.0%
!! CTAAAAAAAATAGAAAGTTT+AGG - chr4_1:50236153-50236172 None:intergenic 15.0%
!!! ATTTTTTACTGGTATATATA+AGG - chr4_1:50236255-50236274 None:intergenic 15.0%
!!! TAAAGTTTTTATCAAATGAA+TGG + chr4_1:50236308-50236327 Msa0553290:intron 15.0%
!!! TCAATTCAAAATTTTTATAG+GGG + chr4_1:50236357-50236376 Msa0553290:intron 15.0%
!!! TTTTTGATAAAATATTATGG+GGG - chr4_1:50236433-50236452 None:intergenic 15.0%
!!! AGTGTAAGTATTATTTTTTT+TGG - chr4_1:50236669-50236688 None:intergenic 15.0%
!!! TTTTCAATAGGAAAATATTT+TGG - chr4_1:50236717-50236736 None:intergenic 15.0%
!!! TGTTTTTTTTAACTTGAATT+TGG + chr4_1:50236762-50236781 Msa0553290:intron 15.0%
!!! TTAAACCTATCTTATTTTAT+TGG + chr4_1:50236800-50236819 Msa0553290:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr4_1:50237509-50237528 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr4_1:50237508-50237527 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr4_1:50237417-50237436 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr4_1:50237317-50237336 Msa0553290:intron 15.0%
!!! AATTTTGCAATAATTTTTTG+CGG + chr4_1:50237352-50237371 Msa0553290:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr4_1:50237508-50237527 Msa0553290:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr4_1:50237509-50237528 Msa0553290:intron 15.0%
!! TATTCAACTCATTTAATATA+GGG - chr4_1:50237583-50237602 None:intergenic 15.0%
!! AATATCGAAAATTAAATCTT+GGG - chr4_1:50237893-50237912 None:intergenic 15.0%
!! TAATATCGAAAATTAAATCT+TGG - chr4_1:50237894-50237913 None:intergenic 15.0%
!! TTTCGATATTAATTATTACT+AGG + chr4_1:50237903-50237922 Msa0553290:intron 15.0%
!! TCGAATAATATAATTTGATT+TGG - chr4_1:50238127-50238146 None:intergenic 15.0%
!! TGTATAACTTCAATAAAATA+AGG + chr4_1:50238228-50238247 Msa0553290:intron 15.0%
!!! AGTTCACATTATAATATTTT+GGG + chr4_1:50238304-50238323 Msa0553290:intron 15.0%
!! AAAAAATATAAAGGGTTAAT+AGG + chr4_1:50239304-50239323 Msa0553290:intron 15.0%
!! AATCAAAAAAAAAAATTACC+GGG - chr4_1:50239369-50239388 None:intergenic 15.0%
!!! AAACAATTTTTTTTTACAAG+GGG - chr4_1:50239396-50239415 None:intergenic 15.0%
!!! CAAAACAATTTTTTTTTACA+AGG - chr4_1:50239398-50239417 None:intergenic 15.0%
!!! CTTGTAAAAAAAAATTGTTT+TGG + chr4_1:50239396-50239415 Msa0553290:intron 15.0%
!!! ATCAAAACAATTTTTTTTAC+AGG + chr4_1:50239503-50239522 Msa0553290:intron 15.0%
!!! TCAAAACAATTTTTTTTACA+GGG + chr4_1:50239504-50239523 Msa0553290:intron 15.0%
!! AATAAAAAAAAAATTACAGG+AGG + chr4_1:50239531-50239550 Msa0553290:intron 15.0%
!! ATAAAAAAAAAATTACAGGA+GGG + chr4_1:50239532-50239551 Msa0553290:intron 15.0%
!! TAAAAGTAAAAAATTGTGTT+TGG - chr4_1:50239851-50239870 None:intergenic 15.0%
!!! GTTTTTATATAGTATAACAT+GGG - chr4_1:50239912-50239931 None:intergenic 15.0%
!!! AGTTTTTATATAGTATAACA+TGG - chr4_1:50239913-50239932 None:intergenic 15.0%
!! AATCAAATTAGTATAATATG+TGG - chr4_1:50240839-50240858 None:intergenic 15.0%
!! TATATACTTGGTTTATACTT+TGG + chr4_1:50234080-50234099 Msa0553290:five_prime_UTR 20.0%
!! TGTAATTAAGCAAAATCATT+AGG - chr4_1:50234373-50234392 None:intergenic 20.0%
!! AAATTTACTGAATATGGTAA+CGG - chr4_1:50234690-50234709 None:intergenic 20.0%
!! ATAAGGCCTATTTAATTAAA+CGG + chr4_1:50235358-50235377 Msa0553290:intron 20.0%
!! CTAAATAACCAATTATATGA+AGG - chr4_1:50235502-50235521 None:intergenic 20.0%
!! TTATTTAGTAGCTGATATAT+TGG + chr4_1:50235514-50235533 Msa0553290:intron 20.0%
!! TAAATAATGAATTCTTACGA+AGG - chr4_1:50235550-50235569 None:intergenic 20.0%
!!! CATAAAATAGGCTTTTAAAT+AGG + chr4_1:50235653-50235672 Msa0553290:intron 20.0%
!!! TTTTATAGGACCTTTTTTTT+TGG - chr4_1:50235884-50235903 None:intergenic 20.0%
!!! CTCAAAAGTTGTAATTTTAT+AGG - chr4_1:50235898-50235917 None:intergenic 20.0%
!!! CTCAAATGTTGTAATTTTAT+AGG - chr4_1:50235977-50235996 None:intergenic 20.0%
!! AACTTTAATAAACAATGACA+TGG - chr4_1:50236295-50236314 None:intergenic 20.0%
!!! CAATTCAAAATTTTTATAGG+GGG + chr4_1:50236358-50236377 Msa0553290:intron 20.0%
!! TAGTGCATGTATTATATTAA+AGG + chr4_1:50237020-50237039 Msa0553290:intron 20.0%
!! AGTGCATGTATTATATTAAA+GGG + chr4_1:50237021-50237040 Msa0553290:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr4_1:50237446-50237465 Msa0553290:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr4_1:50237447-50237466 Msa0553290:intron 20.0%
!! GTATTCAACTCATTTAATAT+AGG - chr4_1:50237584-50237603 None:intergenic 20.0%
!! ATATCGAAAATTAAATCTTG+GGG - chr4_1:50237892-50237911 None:intergenic 20.0%
!! ATATCTTGATTTCATATTGA+TGG + chr4_1:50237955-50237974 Msa0553290:intron 20.0%
!! ACAACATAAACAACAAAATA+AGG - chr4_1:50238033-50238052 None:intergenic 20.0%
!!! GAGTTCACATTATAATATTT+TGG + chr4_1:50238303-50238322 Msa0553290:intron 20.0%
!!! TAAGCAAAAATCAACTTTTT+AGG + chr4_1:50238466-50238485 Msa0553290:intron 20.0%
!! CATTCATTAAATGATGTATT+TGG + chr4_1:50238491-50238510 Msa0553290:intron 20.0%
!! ATGTATTTGGTCTATATTAT+TGG + chr4_1:50238504-50238523 Msa0553290:intron 20.0%
!!! TAAGCAAAAATCAACTTTTT+AGG - chr4_1:50238466-50238485 None:intergenic 20.0%
!!! TTTGTTATTTGAACTATTTG+TGG + chr4_1:50238754-50238773 Msa0553290:intron 20.0%
!!! TTGTTATTTGAACTATTTGT+GGG + chr4_1:50238755-50238774 Msa0553290:intron 20.0%
!! TATTTGTAATTCTATCTACT+CGG - chr4_1:50238978-50238997 None:intergenic 20.0%
!! ATCAGAAATGACATATATTA+CGG - chr4_1:50239340-50239359 None:intergenic 20.0%
!! ATCAAAAAAAAAAATTACCG+GGG - chr4_1:50239368-50239387 None:intergenic 20.0%
!!! AACAATTTTTTTTTACAAGG+GGG - chr4_1:50239395-50239414 None:intergenic 20.0%
!!! AAATAAAATCGGTTTTTGTT+TGG - chr4_1:50239438-50239457 None:intergenic 20.0%
!!! AAGAAATTTTCGTTTTTGTT+TGG + chr4_1:50239465-50239484 Msa0553290:intron 20.0%
!!! CAAAACAATTTTTTTTACAG+GGG + chr4_1:50239505-50239524 Msa0553290:intron 20.0%
!!! AAAACAATTTTTTTTACAGG+GGG + chr4_1:50239506-50239525 Msa0553290:intron 20.0%
!! TAATTTATACTTGGGTTAAT+AGG - chr4_1:50239594-50239613 None:intergenic 20.0%
!! CTCAATCTTAATTTATACTT+GGG - chr4_1:50239602-50239621 None:intergenic 20.0%
!!! AAAATAATTTGTTAGCAACT+TGG - chr4_1:50239634-50239653 None:intergenic 20.0%
!! CAAACTAAAATATAATGCAA+TGG - chr4_1:50241173-50241192 None:intergenic 20.0%
! TCAAAGGAAAATTAATGCTA+TGG - chr4_1:50233926-50233945 None:intergenic 25.0%
! ATTAGTACAAGGAATAGTAT+TGG + chr4_1:50233993-50234012 Msa0553290:five_prime_UTR 25.0%
!!! TCTATCATTTTTCTACTTGT+TGG + chr4_1:50234157-50234176 Msa0553290:CDS 25.0%
! TGTAGAAATATGTATAGAGT+GGG - chr4_1:50234432-50234451 None:intergenic 25.0%
! TTGTAGAAATATGTATAGAG+TGG - chr4_1:50234433-50234452 None:intergenic 25.0%
! GGAGCTAAATATATACTTTA+AGG + chr4_1:50234623-50234642 Msa0553290:intron 25.0%
! TTGGTTTCAAAATTTAGTGA+CGG - chr4_1:50234777-50234796 None:intergenic 25.0%
! AAAAACATTTGTTCACTACT+AGG - chr4_1:50234859-50234878 None:intergenic 25.0%
! TTAATAGTTAAGTCCACATT+TGG + chr4_1:50234953-50234972 Msa0553290:intron 25.0%
! TAAGGCCTATTTAATTAAAC+GGG + chr4_1:50235359-50235378 Msa0553290:intron 25.0%
! ATATGAAAAGCTTAATAGGT+CGG - chr4_1:50235426-50235445 None:intergenic 25.0%
! ATATAGGGCAAAACTTATTA+AGG - chr4_1:50235600-50235619 None:intergenic 25.0%
!! TAATAAGTTTTGCCCTATAT+AGG + chr4_1:50235600-50235619 Msa0553290:intron 25.0%
!! TAAAAGCCTATTTTATGCTA+AGG - chr4_1:50235650-50235669 None:intergenic 25.0%
!! ATTTTTATGCATTGTCCATA+GGG - chr4_1:50235828-50235847 None:intergenic 25.0%
!!! TATTTTTATGCATTGTCCAT+AGG - chr4_1:50235829-50235848 None:intergenic 25.0%
! ACAATGCATAAAAATATGCA+AGG + chr4_1:50235833-50235852 Msa0553290:intron 25.0%
!! AGTTTAGTCTTTACATTACA+GGG + chr4_1:50235916-50235935 Msa0553290:intron 25.0%
!!! CTTAGAAGCTTATTTTTTAC+TGG - chr4_1:50236266-50236285 None:intergenic 25.0%
! TAAGTGATACTATGAGTTAT+GGG - chr4_1:50236619-50236638 None:intergenic 25.0%
! TTAAGTGATACTATGAGTTA+TGG - chr4_1:50236620-50236639 None:intergenic 25.0%
!!! TATCTTATTTTATTGGCGAA+GGG + chr4_1:50236807-50236826 Msa0553290:intron 25.0%
! ATTACACTACACAATCTATA+CGG - chr4_1:50236852-50236871 None:intergenic 25.0%
! TATAGATTGTGTAGTGTAAT+TGG + chr4_1:50236852-50236871 Msa0553290:intron 25.0%
!!! CTTTTTTTTCTTTTTCCGTT+TGG + chr4_1:50236980-50236999 Msa0553290:intron 25.0%
!!! TACAAAGTCGCTATTTTATA+GGG - chr4_1:50237064-50237083 None:intergenic 25.0%
!!! TTACAAAGTCGCTATTTTAT+AGG - chr4_1:50237065-50237084 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr4_1:50237157-50237176 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr4_1:50237158-50237177 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr4_1:50237480-50237499 Msa0553290:intron 25.0%
! TTGAAGTTATACATCCTTAA+GGG - chr4_1:50238221-50238240 None:intergenic 25.0%
! ATTGAAGTTATACATCCTTA+AGG - chr4_1:50238222-50238241 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr4_1:50238565-50238584 None:intergenic 25.0%
!! CTAATATTTTACTGTGTAAG+TGG + chr4_1:50238643-50238662 Msa0553290:intron 25.0%
! GACAATGCATAATATATGTA+AGG + chr4_1:50239029-50239048 Msa0553290:intron 25.0%
! TGCATAATATATGTAAGGTT+CGG + chr4_1:50239034-50239053 Msa0553290:intron 25.0%
! ACTTACAATTCTGAATATGT+AGG + chr4_1:50239254-50239273 Msa0553290:intron 25.0%
! ATGTAGGTTACTTGTATTAT+AGG + chr4_1:50239270-50239289 Msa0553290:intron 25.0%
! ACGATGCTGAAAAAATATAA+AGG + chr4_1:50239295-50239314 Msa0553290:intron 25.0%
! CGATGCTGAAAAAATATAAA+GGG + chr4_1:50239296-50239315 Msa0553290:intron 25.0%
! TCAGAAATGACATATATTAC+GGG - chr4_1:50239339-50239358 None:intergenic 25.0%
! TCAAAAAAAAAAATTACCGG+GGG - chr4_1:50239367-50239386 None:intergenic 25.0%
!!! ACAATTTTTTTTTACAAGGG+GGG - chr4_1:50239394-50239413 None:intergenic 25.0%
! ATCGGAAATGATCTAATTAT+TGG + chr4_1:50239558-50239577 Msa0553290:intron 25.0%
! TCGGAAATGATCTAATTATT+GGG + chr4_1:50239559-50239578 Msa0553290:intron 25.0%
! CCTCAATCTTAATTTATACT+TGG - chr4_1:50239603-50239622 None:intergenic 25.0%
! CCAAGTATAAATTAAGATTG+AGG + chr4_1:50239600-50239619 Msa0553290:intron 25.0%
! TTTATATAGTATAACATGGG+AGG - chr4_1:50239909-50239928 None:intergenic 25.0%
!! ATTTTTACATCTTGAGCATA+GGG - chr4_1:50240328-50240347 None:intergenic 25.0%
!!! GTTGTAAATATTGTTTTGCT+TGG - chr4_1:50240540-50240559 None:intergenic 25.0%
!! TTCTTTAGGAAGTCTATTAT+TGG - chr4_1:50240562-50240581 None:intergenic 25.0%
!! TATGCTCTTTTTAAACAACA+AGG + chr4_1:50240658-50240677 Msa0553290:CDS 25.0%
!! GATATTTAGATGATTTGTCA+GGG - chr4_1:50240981-50241000 None:intergenic 25.0%
!! TGATATTTAGATGATTTGTC+AGG - chr4_1:50240982-50241001 None:intergenic 25.0%
! ACATTACATACATAGAAAGA+TGG - chr4_1:50241101-50241120 None:intergenic 25.0%
! ATTTTCCTTTGAGTGATTGA+CGG + chr4_1:50233934-50233953 Msa0553290:five_prime_UTR 30.0%
TATTCCTTGTACTAATTGCA+GGG - chr4_1:50233989-50234008 None:intergenic 30.0%
ATCAAAGCTGCATATATACT+TGG + chr4_1:50234068-50234087 Msa0553290:five_prime_UTR 30.0%
TCCATTGGACTAAAATTTAC+AGG + chr4_1:50234187-50234206 Msa0553290:CDS 30.0%
!! ACCTGTAAATTTTAGTCCAA+TGG - chr4_1:50234191-50234210 None:intergenic 30.0%
! CTTTAAGGATGCATCTAATA+TGG + chr4_1:50234638-50234657 Msa0553290:intron 30.0%
!!! CACTTTGAACTATTTTTGAG+AGG - chr4_1:50234665-50234684 None:intergenic 30.0%
CTCTCAAAAATAGTTCAAAG+TGG + chr4_1:50234663-50234682 Msa0553290:intron 30.0%
TTAACGAGGAAAATTTAGTG+AGG + chr4_1:50234726-50234745 Msa0553290:intron 30.0%
TTGAAACCAAAGAATTTGTG+AGG + chr4_1:50234787-50234806 Msa0553290:intron 30.0%
TGAAACCAAAGAATTTGTGA+GGG + chr4_1:50234788-50234807 Msa0553290:intron 30.0%
AAAATCCCTCACAAATTCTT+TGG - chr4_1:50234796-50234815 None:intergenic 30.0%
! TCAGTTGGTATGAACAATTA+GGG + chr4_1:50235233-50235252 Msa0553290:intron 30.0%
! TCAGGCTCAAACTTTTTATA+AGG + chr4_1:50235341-50235360 Msa0553290:intron 30.0%
AACACAAGCCTTCATATAAT+TGG + chr4_1:50235491-50235510 Msa0553290:intron 30.0%
! TTTTTATGCATTGTCCATAG+GGG - chr4_1:50235827-50235846 None:intergenic 30.0%
! GAGTTTAGTCTTTACATTAC+AGG + chr4_1:50235915-50235934 Msa0553290:intron 30.0%
TCTTCTCATAGGTTTAATGT+GGG - chr4_1:50236387-50236406 None:intergenic 30.0%
CTTCGCCAATAAAATAAGAT+AGG - chr4_1:50236808-50236827 None:intergenic 30.0%
!!! CTATCTTATTTTATTGGCGA+AGG + chr4_1:50236806-50236825 Msa0553290:intron 30.0%
CAAGATTAGAACACTATGAA+AGG + chr4_1:50237220-50237239 Msa0553290:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr4_1:50237479-50237498 Msa0553290:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr4_1:50237539-50237558 Msa0553290:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr4_1:50237540-50237559 Msa0553290:intron 30.0%
GTGACTAATTCTTAGTTGAT+CGG - chr4_1:50237609-50237628 None:intergenic 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr4_1:50237669-50237688 None:intergenic 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr4_1:50237670-50237689 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG - chr4_1:50237698-50237717 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG + chr4_1:50237818-50237837 Msa0553290:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG + chr4_1:50237819-50237838 Msa0553290:intron 30.0%
GACATGCAACTTACAAAATA+AGG - chr4_1:50237999-50238018 None:intergenic 30.0%
AATTTATTGTGTCCCTTGAA+AGG - chr4_1:50238272-50238291 None:intergenic 30.0%
! TTTTGCTTATAATAGTGACC+GGG - chr4_1:50238566-50238585 None:intergenic 30.0%
AAAATATTAGAGTCGTGCTA+GGG - chr4_1:50238633-50238652 None:intergenic 30.0%
TAAAATATTAGAGTCGTGCT+AGG - chr4_1:50238634-50238653 None:intergenic 30.0%
! AAAATGTCGGTTGACAAAAA+TGG - chr4_1:50238705-50238724 None:intergenic 30.0%
TTTAATATTTGTGATGGCTG+AGG - chr4_1:50239068-50239087 None:intergenic 30.0%
TTTAATATTTATGATGGCCG+AGG - chr4_1:50239156-50239175 None:intergenic 30.0%
! AATAATTGTCTAAAGTGAGC+TGG - chr4_1:50239211-50239230 None:intergenic 30.0%
AGAAATGACATATATTACGG+GGG - chr4_1:50239337-50239356 None:intergenic 30.0%
CAGAAATGACATATATTACG+GGG - chr4_1:50239338-50239357 None:intergenic 30.0%
CAAAAAAAAAAATTACCGGG+GGG - chr4_1:50239366-50239385 None:intergenic 30.0%
AAAATTACAGGAGGGAAAAT+CGG + chr4_1:50239540-50239559 Msa0553290:intron 30.0%
CGGAAATGATCTAATTATTG+GGG + chr4_1:50239560-50239579 Msa0553290:intron 30.0%
GGAAATGATCTAATTATTGG+GGG + chr4_1:50239561-50239580 Msa0553290:intron 30.0%
GAAATGATCTAATTATTGGG+GGG + chr4_1:50239562-50239581 Msa0553290:intron 30.0%
! GTTGCAAACGACAAATTTTA+GGG - chr4_1:50240032-50240051 None:intergenic 30.0%
GTGGATTTATACAAGTCAAA+TGG + chr4_1:50240148-50240167 Msa0553290:CDS 30.0%
TTCTATGTTGGAACCTTTAA+GGG - chr4_1:50240221-50240240 None:intergenic 30.0%
ATTCTATGTTGGAACCTTTA+AGG - chr4_1:50240222-50240241 None:intergenic 30.0%
ATCAAGGATCAATTCTATGT+TGG - chr4_1:50240233-50240252 None:intergenic 30.0%
! GATTTTTACATCTTGAGCAT+AGG - chr4_1:50240329-50240348 None:intergenic 30.0%
AAAATCAAGTACATCACTGT+TGG + chr4_1:50240343-50240362 Msa0553290:CDS 30.0%
! TGCATTTTGAATGTTTTGCA+TGG - chr4_1:50240416-50240435 None:intergenic 30.0%
ATTTCATCAGCAAGTTTACA+AGG + chr4_1:50240436-50240455 Msa0553290:CDS 30.0%
AATTCATATCCACCTAATGA+TGG + chr4_1:50240502-50240521 Msa0553290:CDS 30.0%
ATAGACTTCCTAAAGAACAA+TGG + chr4_1:50240565-50240584 Msa0553290:CDS 30.0%
TATCCATACTTCGCTTATAT+CGG + chr4_1:50240610-50240629 Msa0553290:CDS 30.0%
AACAAGGAAACAATGATGTT+GGG + chr4_1:50240674-50240693 Msa0553290:CDS 30.0%
TTGATTAATCACGTCAAGAA+TGG + chr4_1:50240853-50240872 Msa0553290:CDS 30.0%
TGATTAATCACGTCAAGAAT+GGG + chr4_1:50240854-50240873 Msa0553290:CDS 30.0%
! CTTCTGATTTTCATCAAACA+TGG - chr4_1:50240920-50240939 None:intergenic 30.0%
TTTGATGAAAATCAGAAGAC+TGG + chr4_1:50240922-50240941 Msa0553290:CDS 30.0%
AAAGAGACCAAAATGTTGTT+CGG - chr4_1:50240956-50240975 None:intergenic 30.0%
TACTATGAATAATTGTGCCA+TGG + chr4_1:50241060-50241079 Msa0553290:three_prime_UTR 30.0%
ACTATGAATAATTGTGCCAT+GGG + chr4_1:50241061-50241080 Msa0553290:three_prime_UTR 30.0%
! TTTTCCTTTGAGTGATTGAC+GGG + chr4_1:50233935-50233954 Msa0553290:five_prime_UTR 35.0%
CTATTCCTTGTACTAATTGC+AGG - chr4_1:50233990-50234009 None:intergenic 35.0%
!! GCATATAAATATGGACTAGC+AGG + chr4_1:50234033-50234052 Msa0553290:five_prime_UTR 35.0%
!! TATAAATATGGACTAGCAGG+TGG + chr4_1:50234036-50234055 Msa0553290:five_prime_UTR 35.0%
AGGAAAAGCAAAACTAGGTA+GGG - chr4_1:50234839-50234858 None:intergenic 35.0%
TAGGAAAAGCAAAACTAGGT+AGG - chr4_1:50234840-50234859 None:intergenic 35.0%
CTACTAGGAAAAGCAAAACT+AGG - chr4_1:50234844-50234863 None:intergenic 35.0%
AGTTAAGTCCACATTTGGAT+AGG + chr4_1:50234958-50234977 Msa0553290:intron 35.0%
GTTAAGTCCACATTTGGATA+GGG + chr4_1:50234959-50234978 Msa0553290:intron 35.0%
! CTCAGTTGGTATGAACAATT+AGG + chr4_1:50235232-50235251 Msa0553290:intron 35.0%
! CAGTTGGTATGAACAATTAG+GGG + chr4_1:50235234-50235253 Msa0553290:intron 35.0%
AAAAAGCCTATTAAGCCCAT+CGG + chr4_1:50235399-50235418 Msa0553290:intron 35.0%
CAAGCATATTTGTGTGCTTT+AGG + chr4_1:50235574-50235593 Msa0553290:intron 35.0%
TGTAAGCCTACTCCTATATA+GGG - chr4_1:50235615-50235634 None:intergenic 35.0%
ATGTAAGCCTACTCCTATAT+AGG - chr4_1:50235616-50235635 None:intergenic 35.0%
! AGGCTTTTAAATAGGCTTTC+AGG + chr4_1:50235661-50235680 Msa0553290:intron 35.0%
!!! AGGCCTAACATTTTTGAAGT+AGG + chr4_1:50235755-50235774 Msa0553290:intron 35.0%
TGGCCTACTTCAAAAATGTT+AGG - chr4_1:50235761-50235780 None:intergenic 35.0%
!!! TAACATTTTTGAAGTAGGCC+AGG + chr4_1:50235760-50235779 Msa0553290:intron 35.0%
GCATAAAAATATGCAAGGTC+CGG + chr4_1:50235838-50235857 Msa0553290:intron 35.0%
CATAAAAATATGCAAGGTCC+GGG + chr4_1:50235839-50235858 Msa0553290:intron 35.0%
ATAAAAATATGCAAGGTCCG+GGG + chr4_1:50235840-50235859 Msa0553290:intron 35.0%
!!! AGGACCTTTTTTTTTGGTGA+TGG - chr4_1:50235878-50235897 None:intergenic 35.0%
!!! TTTTTTTTTTGTGATGGCCG+AGG - chr4_1:50235948-50235967 None:intergenic 35.0%
CTCTTCTCATAGGTTTAATG+TGG - chr4_1:50236388-50236407 None:intergenic 35.0%
! AAGAGCCTATGGATTTTACA+GGG + chr4_1:50236403-50236422 Msa0553290:intron 35.0%
! AACATTTTACACCTGCACAT+GGG + chr4_1:50236535-50236554 Msa0553290:intron 35.0%
!! TTATTTTATTGGCGAAGGGA+TGG + chr4_1:50236811-50236830 Msa0553290:intron 35.0%
!!! TTTTTCCGTTTGGTGCATAT+CGG + chr4_1:50236990-50237009 Msa0553290:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr4_1:50237524-50237543 Msa0553290:intron 35.0%
GACTAACAAAGTCTACATTC+AGG - chr4_1:50237699-50237718 None:intergenic 35.0%
ACTAACAAAGTCTGCATTCA+GGG - chr4_1:50237730-50237749 None:intergenic 35.0%
! AGTCACTTTAGTCCTTGAAT+GGG - chr4_1:50237865-50237884 None:intergenic 35.0%
! TAGTCACTTTAGTCCTTGAA+TGG - chr4_1:50237866-50237885 None:intergenic 35.0%
GAAAGGTAGACATAGTCATT+TGG - chr4_1:50238255-50238274 None:intergenic 35.0%
ATGACTATGTCTACCTTTCA+AGG + chr4_1:50238256-50238275 Msa0553290:intron 35.0%
TGACTATGTCTACCTTTCAA+GGG + chr4_1:50238257-50238276 Msa0553290:intron 35.0%
AATATAAAACTTACTCCCCC+CGG + chr4_1:50238434-50238453 Msa0553290:intron 35.0%
TTTGCTTATAATAGTGACCG+GGG - chr4_1:50238454-50238473 None:intergenic 35.0%
TTGCTTATAATAGTGACCAG+AGG + chr4_1:50238568-50238587 Msa0553290:intron 35.0%
TGCTTATAATAGTGACCAGA+GGG + chr4_1:50238569-50238588 Msa0553290:intron 35.0%
GAATTAAAACATACTCCCTC+TGG - chr4_1:50238587-50238606 None:intergenic 35.0%
! TCAACCGACATTTTACTCAA+GGG + chr4_1:50238711-50238730 Msa0553290:intron 35.0%
CATTCCCTTGAGTAAAATGT+CGG - chr4_1:50238718-50238737 None:intergenic 35.0%
GTTCAAATAACAAACCTCTG+CGG - chr4_1:50238748-50238767 None:intergenic 35.0%
! TGAACTTAACTCAGTTGGTA+GGG + chr4_1:50239007-50239026 Msa0553290:intron 35.0%
! ATTTAAAGTCCAGCTCACTT+TGG + chr4_1:50239116-50239135 Msa0553290:intron 35.0%
GAAATGACATATATTACGGG+GGG - chr4_1:50239336-50239355 None:intergenic 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG - chr4_1:50239477-50239496 None:intergenic 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG - chr4_1:50239476-50239495 None:intergenic 35.0%
!! GGTTTTTGTTTGGCCTATTA+GGG - chr4_1:50239428-50239447 None:intergenic 35.0%
!! TCGTTTTTGTTTGGCCTATT+AGG + chr4_1:50239474-50239493 Msa0553290:intron 35.0%
!! CGTTTTTGTTTGGCCTATTA+GGG + chr4_1:50239475-50239494 Msa0553290:intron 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG + chr4_1:50239476-50239495 Msa0553290:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG + chr4_1:50239477-50239496 Msa0553290:intron 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG - chr4_1:50239491-50239510 None:intergenic 35.0%
!! AGGTTGATGGTTAGTTTGTT+AGG - chr4_1:50239661-50239680 None:intergenic 35.0%
AAGCAAGCGTATTTATGAAG+AGG + chr4_1:50239684-50239703 Msa0553290:intron 35.0%
GTACACGTATGATACTTGTT+TGG + chr4_1:50239723-50239742 Msa0553290:intron 35.0%
TTCGTTATGAGTGATGTTTG+TGG + chr4_1:50239768-50239787 Msa0553290:intron 35.0%
! CGTTGCAAACGACAAATTTT+AGG - chr4_1:50240033-50240052 None:intergenic 35.0%
CATAGAATTGATCCTTGATG+TGG + chr4_1:50240234-50240253 Msa0553290:CDS 35.0%
ATGGCAATGAAGCTACAAAT+TGG + chr4_1:50240284-50240303 Msa0553290:CDS 35.0%
TGGCAATGAAGCTACAAATT+GGG + chr4_1:50240285-50240304 Msa0553290:CDS 35.0%
!! CATAGGGTGTCACATATTTT+TGG - chr4_1:50240312-50240331 None:intergenic 35.0%
TATTGGGCTTCATTGTCATT+AGG - chr4_1:50240382-50240401 None:intergenic 35.0%
AAGTTTACAAGGCCAAATCA+AGG + chr4_1:50240447-50240466 Msa0553290:CDS 35.0%
GCAATTGACATGACTTTGAT+TGG + chr4_1:50240478-50240497 Msa0553290:CDS 35.0%
TCAGTGAAAACACCATCATT+AGG - chr4_1:50240517-50240536 None:intergenic 35.0%
TTACCGATATAAGCGAAGTA+TGG - chr4_1:50240616-50240635 None:intergenic 35.0%
CAACAAGGAAACAATGATGT+TGG + chr4_1:50240673-50240692 Msa0553290:CDS 35.0%
TTTCCTTTGAGTGATTGACG+GGG + chr4_1:50233936-50233955 Msa0553290:five_prime_UTR 40.0%
ATCACCCTGCAATTAGTACA+AGG + chr4_1:50233982-50234001 Msa0553290:five_prime_UTR 40.0%
CTTGTTGGTATACTGTCCAT+TGG + chr4_1:50234172-50234191 Msa0553290:CDS 40.0%
CTAGGTAGGGAAATTAGTGA+TGG - chr4_1:50234826-50234845 None:intergenic 40.0%
TATCGTGAGCTTATCTCAGT+TGG + chr4_1:50235218-50235237 Msa0553290:intron 40.0%
TTGGTATGAACAATTAGGGG+TGG + chr4_1:50235237-50235256 Msa0553290:intron 40.0%
TGGTATGAACAATTAGGGGT+GGG + chr4_1:50235238-50235257 Msa0553290:intron 40.0%
AGTTAGGCCTTAAATAGGCT+AGG - chr4_1:50235296-50235315 None:intergenic 40.0%
! AGCCTATTTAAGGCCTAACT+CGG + chr4_1:50235296-50235315 Msa0553290:intron 40.0%
GCTCAGCTCGTTTATTAACA+AGG + chr4_1:50235318-50235337 Msa0553290:intron 40.0%
GCTCGTTTATTAACAAGGTC+AGG + chr4_1:50235323-50235342 Msa0553290:intron 40.0%
CCTGGCCCGTTTAATTAAAT+AGG - chr4_1:50235367-50235386 None:intergenic 40.0%
CCTATTTAATTAAACGGGCC+AGG + chr4_1:50235364-50235383 Msa0553290:intron 40.0%
AAAAGCCTATTAAGCCCATC+GGG + chr4_1:50235400-50235419 Msa0553290:intron 40.0%
! GTTTTGCCCTATATAGGAGT+AGG + chr4_1:50235606-50235625 Msa0553290:intron 40.0%
GTCAGGCCTTAGCATAAAAT+AGG + chr4_1:50235641-50235660 Msa0553290:intron 40.0%
! GCTTCATCAGGCCTTTAAAA+AGG + chr4_1:50235683-50235702 Msa0553290:intron 40.0%
! ATCAGGCCTTTAAAAAGGTC+AGG + chr4_1:50235688-50235707 Msa0553290:intron 40.0%
!!! TTTTTTTTTGGTGATGGCCG+AGG - chr4_1:50235872-50235891 None:intergenic 40.0%
TCGGCCATCACCAAAAAAAA+AGG + chr4_1:50235871-50235890 Msa0553290:intron 40.0%
AAACCTATGAGAAGAGCCTA+TGG + chr4_1:50236392-50236411 Msa0553290:intron 40.0%
AATCCATAGGCTCTTCTCAT+AGG - chr4_1:50236398-50236417 None:intergenic 40.0%
! GAAGAGCCTATGGATTTTAC+AGG + chr4_1:50236402-50236421 Msa0553290:intron 40.0%
GACATCCCTGTAAAATCCAT+AGG - chr4_1:50236411-50236430 None:intergenic 40.0%
GTGCAGGTGTAAAATGTTGA+AGG - chr4_1:50236533-50236552 None:intergenic 40.0%
! CAACATTTTACACCTGCACA+TGG + chr4_1:50236534-50236553 Msa0553290:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG + chr4_1:50237623-50237642 Msa0553290:intron 40.0%
GACTAACAAAGTCTGCATTC+AGG - chr4_1:50237731-50237750 None:intergenic 40.0%
ACTAACGGAGTCTACATTCA+GGG - chr4_1:50237762-50237781 None:intergenic 40.0%
TCAGGGACTAAAGTGACTAA+CGG - chr4_1:50237621-50237640 None:intergenic 40.0%
ACACTTATGAGGTAGGTGTA+TGG - chr4_1:50238189-50238208 None:intergenic 40.0%
GTTATACATCCTTAAGGGTG+AGG - chr4_1:50238216-50238235 None:intergenic 40.0%
AATGCTCATTTGTGTCCTGA+AGG + chr4_1:50238328-50238347 Msa0553290:intron 40.0%
ACTTCTAAACTTGTGCCTTC+AGG - chr4_1:50238346-50238365 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+GGG - chr4_1:50238453-50238472 None:intergenic 40.0%
! GTCAACCGACATTTTACTCA+AGG + chr4_1:50238710-50238729 Msa0553290:intron 40.0%
GTGAACTTAACTCAGTTGGT+AGG + chr4_1:50239006-50239025 Msa0553290:intron 40.0%
!!! GTTTTGGTTTACCCCCTAAT+AGG + chr4_1:50239412-50239431 Msa0553290:intron 40.0%
!! CGGTTTTTGTTTGGCCTATT+AGG - chr4_1:50239429-50239448 None:intergenic 40.0%
CATAAATACGCTTGCTTGAG+AGG - chr4_1:50239681-50239700 None:intergenic 40.0%
AAGAGGTTAAGTACCTGTAC+TGG + chr4_1:50239701-50239720 Msa0553290:intron 40.0%
TATCATACGTGTACCAGTAC+AGG - chr4_1:50239717-50239736 None:intergenic 40.0%
CATTCCATAGCAAACTCCTA+CGG - chr4_1:50240095-50240114 None:intergenic 40.0%
ACCATCAAGTCAAGAAGTTG+TGG + chr4_1:50240129-50240148 Msa0553290:CDS 40.0%
! TCCACAACTTCTTGACTTGA+TGG - chr4_1:50240133-50240152 None:intergenic 40.0%
AAGAGAAGAAAGGGTTTCCT+TGG - chr4_1:50240260-50240279 None:intergenic 40.0%
ACCCTTTCTTCTCTTACAGA+TGG + chr4_1:50240265-50240284 Msa0553290:CDS 40.0%
GCCATCTGTAAGAGAAGAAA+GGG - chr4_1:50240269-50240288 None:intergenic 40.0%
TGCCATCTGTAAGAGAAGAA+AGG - chr4_1:50240270-50240289 None:intergenic 40.0%
! TTGAATGTTTTGCATGGCAG+TGG - chr4_1:50240410-50240429 None:intergenic 40.0%
! TTGCTGTTGAGACCTTGATT+TGG - chr4_1:50240462-50240481 None:intergenic 40.0%
GTGAAAACACCATCATTAGG+TGG - chr4_1:50240514-50240533 None:intergenic 40.0%
GGATACACATTAGCAAGAAG+TGG - chr4_1:50240595-50240614 None:intergenic 40.0%
GGACACAACTATCTTCACAT+CGG - chr4_1:50240764-50240783 None:intergenic 40.0%
AAGTAAGTCTCAATAGCTCC+AGG - chr4_1:50240892-50240911 None:intergenic 40.0%
CTCAGAGTCTTCCTTATTGG+AGG + chr4_1:50233959-50233978 Msa0553290:five_prime_UTR 45.0%
CTTTCGACCCTATCCAAATG+TGG - chr4_1:50234969-50234988 None:intergenic 45.0%
CACATTTGGATAGGGTCGAA+AGG + chr4_1:50234967-50234986 Msa0553290:intron 45.0%
GAACAATTAGGGGTGGGAAT+AGG + chr4_1:50235244-50235263 Msa0553290:intron 45.0%
AGCCGAGTTAGGCCTTAAAT+AGG - chr4_1:50235301-50235320 None:intergenic 45.0%
!! CTTTTTCGCAAGTCTTAGCC+TGG - chr4_1:50235385-50235404 None:intergenic 45.0%
GTAGGCTTACATGTGTTGTC+AGG + chr4_1:50235624-50235643 Msa0553290:intron 45.0%
ATAGGCTTTCAGGCTTCATC+AGG + chr4_1:50235671-50235690 Msa0553290:intron 45.0%
CCTCGAAAATGAGCCTATGA+CGG + chr4_1:50235716-50235735 Msa0553290:intron 45.0%
CTCGAAAATGAGCCTATGAC+GGG + chr4_1:50235717-50235736 Msa0553290:intron 45.0%
!! ATGAGCCTATGACGGGTAAT+AGG + chr4_1:50235724-50235743 Msa0553290:intron 45.0%
AAAAATGTTAGGCCTGAGCC+TGG - chr4_1:50235750-50235769 None:intergenic 45.0%
!!! TTTTGAAGTAGGCCAGGCTT+AGG + chr4_1:50235766-50235785 Msa0553290:intron 45.0%
TTGTCCATAGGGGTGGAAAT+GGG - chr4_1:50235817-50235836 None:intergenic 45.0%
ATTGTCCATAGGGGTGGAAA+TGG - chr4_1:50235818-50235837 None:intergenic 45.0%
TTATGCATTGTCCATAGGGG+TGG - chr4_1:50235824-50235843 None:intergenic 45.0%
ACATTACAGGGTTCGAACCT+CGG + chr4_1:50235928-50235947 Msa0553290:intron 45.0%
AAGTTGCATTACCCATGTGC+AGG - chr4_1:50236549-50236568 None:intergenic 45.0%
ACACACCGATATGCACCAAA+CGG - chr4_1:50236998-50237017 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG + chr4_1:50237627-50237646 Msa0553290:intron 45.0%
CTTTAGTCCCTGAATCGGAA+GGG + chr4_1:50237628-50237647 Msa0553290:intron 45.0%
GACTAACGGAGTCTACATTC+AGG - chr4_1:50237763-50237782 None:intergenic 45.0%
TCCCTGAAATTGACCATGCA+GGG + chr4_1:50237790-50237809 Msa0553290:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG - chr4_1:50237794-50237813 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG - chr4_1:50237806-50237825 None:intergenic 45.0%
GACGAATCATCTCCCATTCA+AGG + chr4_1:50237850-50237869 Msa0553290:intron 45.0%
ACACCTACCTCATAAGTGTG+AGG + chr4_1:50238190-50238209 Msa0553290:intron 45.0%
TGCTTATAATAGTGACCGGG+GGG - chr4_1:50238452-50238471 None:intergenic 45.0%
CCAACTGAGTTAAGTTCACG+AGG - chr4_1:50239005-50239024 None:intergenic 45.0%
CCTCGTGAACTTAACTCAGT+TGG + chr4_1:50239002-50239021 Msa0553290:intron 45.0%
AGTCCAGCTCACTTTGGATT+CGG + chr4_1:50239122-50239141 Msa0553290:intron 45.0%
TGGATTCGGAGTTCAAACCT+CGG + chr4_1:50239136-50239155 Msa0553290:intron 45.0%
! GTCATTTCTGATTTTCCCCC+CGG + chr4_1:50239348-50239367 Msa0553290:intron 45.0%
GTACGCGTATGGTAACAATG+CGG - chr4_1:50239995-50240014 None:intergenic 45.0%
ATGATGCACATGTACGCGTA+TGG - chr4_1:50240006-50240025 None:intergenic 45.0%
!! CAATCCGTAGGAGTTTGCTA+TGG + chr4_1:50240088-50240107 Msa0553290:CDS 45.0%
!! GGAGTTTGCTATGGAATGCT+TGG + chr4_1:50240097-50240116 Msa0553290:CDS 45.0%
! GGAACCTTTAAGGGCTTGAA+GGG - chr4_1:50240212-50240231 None:intergenic 45.0%
! TGGAACCTTTAAGGGCTTGA+AGG - chr4_1:50240213-50240232 None:intergenic 45.0%
ATTGATCCTTGATGTGGCCA+AGG + chr4_1:50240240-50240259 Msa0553290:CDS 45.0%
CATGGCAGTGGCAATGTATT+GGG - chr4_1:50240398-50240417 None:intergenic 45.0%
GTGGTGCTCCATTGTTCTTT+AGG - chr4_1:50240576-50240595 None:intergenic 45.0%
! ACTGGGCATCAAAGAGGTTT+TGG - chr4_1:50240702-50240721 None:intergenic 45.0%
AGTCTAACTGGGCATCAAAG+AGG - chr4_1:50240708-50240727 None:intergenic 45.0%
CTTTGATGCCCAGTTAGACT+CGG + chr4_1:50240708-50240727 Msa0553290:CDS 45.0%
CGCATATACCGAGTCTAACT+GGG - chr4_1:50240719-50240738 None:intergenic 45.0%
! CCAGTTAGACTCGGTATATG+CGG + chr4_1:50240717-50240736 Msa0553290:CDS 45.0%
TATGCGGCTCTTGAGAAAGT+TGG + chr4_1:50240733-50240752 Msa0553290:CDS 45.0%
ATGCGGCTCTTGAGAAAGTT+GGG + chr4_1:50240734-50240753 Msa0553290:CDS 45.0%
AAGATAGTTGTGTCCGAGAG+TGG + chr4_1:50240769-50240788 Msa0553290:CDS 45.0%
!! TGTGGAAGCATTGTCAGTTG+AGG - chr4_1:50240821-50240840 None:intergenic 45.0%
TCAATAGCTCCAGGTCTCTT+AGG - chr4_1:50240883-50240902 None:intergenic 45.0%
! GCAGCAACCGAACAACATTT+TGG + chr4_1:50240946-50240965 Msa0553290:CDS 45.0%
GGAAATAACATGTGCACCCA+TGG - chr4_1:50241080-50241099 None:intergenic 45.0%
!! AAAAATTATTTATTAACTTT+AGG + chr4_1:50234542-50234561 Msa0553290:intron 5.0%
!!! TATTTTTGATAAAATATTAT+GGG - chr4_1:50236435-50236454 None:intergenic 5.0%
!!! ATATTTTTGATAAAATATTA+TGG - chr4_1:50236436-50236455 None:intergenic 5.0%
!! TGAAAAAAATAATAAATATA+TGG + chr4_1:50236499-50236518 Msa0553290:intron 5.0%
!! GAAAAAAATAATAAATATAT+GGG + chr4_1:50236500-50236519 Msa0553290:intron 5.0%
!!! TAAGTAATTTTTTTTTTATA+GGG - chr4_1:50237124-50237143 None:intergenic 5.0%
!!! ATAAGTAATTTTTTTTTTAT+AGG - chr4_1:50237125-50237144 None:intergenic 5.0%
!!! ATTTTTTTTAATATTTATGA+TGG - chr4_1:50239162-50239181 None:intergenic 5.0%
!! TCTTAAAAAAAAAATAAAAT+CGG - chr4_1:50239449-50239468 None:intergenic 5.0%
GGGCTCAGAGTCTTCCTTAT+TGG + chr4_1:50233956-50233975 Msa0553290:five_prime_UTR 50.0%
TGCAGGGTGATCCTCCAATA+AGG - chr4_1:50233973-50233992 None:intergenic 50.0%
CCTTAAATAGGCTAGGCCGT+AGG - chr4_1:50235289-50235308 None:intergenic 50.0%
CCTACGGCCTAGCCTATTTA+AGG + chr4_1:50235286-50235305 Msa0553290:intron 50.0%
TAAACGAGCTGAGCCGAGTT+AGG - chr4_1:50235312-50235331 None:intergenic 50.0%
! GCCTTTAAAAAGGTCAGGCC+AGG + chr4_1:50235693-50235712 Msa0553290:intron 50.0%
! GCCTGGCCTGACCTTTTTAA+AGG - chr4_1:50235697-50235716 None:intergenic 50.0%
!! ATAGGCTCATTTTCGAGGCC+TGG - chr4_1:50235714-50235733 None:intergenic 50.0%
! CCGTCATAGGCTCATTTTCG+AGG - chr4_1:50235719-50235738 None:intergenic 50.0%
GACGAATCCCTTCCGATTCA+GGG - chr4_1:50237638-50237657 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG - chr4_1:50237639-50237658 None:intergenic 50.0%
GTCCCTGAAATTGACCATGC+AGG + chr4_1:50237789-50237808 Msa0553290:intron 50.0%
GTCCCTGCATGGTCAATTTC+AGG - chr4_1:50237795-50237814 None:intergenic 50.0%
AAAGATACGTGCGAACGCAC+AGG + chr4_1:50238149-50238168 Msa0553290:intron 50.0%
AGGCCTCACACTTATGAGGT+AGG - chr4_1:50238196-50238215 None:intergenic 50.0%
GGGAATGCAAATTTCCGCAG+AGG + chr4_1:50238731-50238750 Msa0553290:intron 50.0%
ACTCCGAATCCAAAGTGAGC+TGG - chr4_1:50239128-50239147 None:intergenic 50.0%
ACGCTTGCTTGAGAGGTTGA+TGG - chr4_1:50239674-50239693 None:intergenic 50.0%
CGTTTGCAACGACTCACACT+TGG + chr4_1:50240042-50240061 Msa0553290:intron 50.0%
TACGCAGTTGTGCAATCCGT+AGG + chr4_1:50240076-50240095 Msa0553290:intron 50.0%
! TTGAAGGGCTTGTTCGTCTG+GGG - chr4_1:50240197-50240216 None:intergenic 50.0%
! CTTGAAGGGCTTGTTCGTCT+GGG - chr4_1:50240198-50240217 None:intergenic 50.0%
CAAGCCCTTCAAGCCCTTAA+AGG + chr4_1:50240205-50240224 Msa0553290:CDS 50.0%
GCATGGCAGTGGCAATGTAT+TGG - chr4_1:50240399-50240418 None:intergenic 50.0%
CCGCATATACCGAGTCTAAC+TGG - chr4_1:50240720-50240739 None:intergenic 50.0%
TGCGGCTCTTGAGAAAGTTG+GGG + chr4_1:50240735-50240754 Msa0553290:CDS 50.0%
TAGTTGTGTCCGAGAGTGGA+TGG + chr4_1:50240773-50240792 Msa0553290:CDS 50.0%
ATCAGATGGCCATCCACTCT+CGG - chr4_1:50240785-50240804 None:intergenic 50.0%
GCACTATCTCCACCATCAGA+TGG - chr4_1:50240799-50240818 None:intergenic 50.0%
AATGGGACTCCTAAGAGACC+TGG + chr4_1:50240871-50240890 Msa0553290:CDS 50.0%
GAGCCCCGTCAATCACTCAA+AGG - chr4_1:50233942-50233961 None:intergenic 55.0%
ATAGGCCAGACCGTCCAACA+AGG + chr4_1:50235262-50235281 Msa0553290:intron 55.0%
TAGGCCAGACCGTCCAACAA+GGG + chr4_1:50235263-50235282 Msa0553290:intron 55.0%
GCTTAATAGGTCGGCCCGAT+GGG - chr4_1:50235417-50235436 None:intergenic 55.0%
AGCTTAATAGGTCGGCCCGA+TGG - chr4_1:50235418-50235437 None:intergenic 55.0%
CCTGGCCTATTACCCGTCAT+AGG - chr4_1:50235732-50235751 None:intergenic 55.0%
!! CCTATGACGGGTAATAGGCC+AGG + chr4_1:50235729-50235748 Msa0553290:intron 55.0%
! GGCTTTGTAAGGCCTAAGCC+TGG - chr4_1:50235781-50235800 None:intergenic 55.0%
GGCTTAGGCCTTACAAAGCC+CGG + chr4_1:50235781-50235800 Msa0553290:intron 55.0%
! CATAGGGGTGGAAATGGGCT+AGG - chr4_1:50235812-50235831 None:intergenic 55.0%
CTAGCCCATTTCCACCCCTA+TGG + chr4_1:50235810-50235829 Msa0553290:intron 55.0%
GGTGAGGCCTCACACTTATG+AGG - chr4_1:50238200-50238219 None:intergenic 55.0%
AGTGTGAGGCCTCACCCTTA+AGG + chr4_1:50238204-50238223 Msa0553290:intron 55.0%
! GCTTGAAGGGCTTGTTCGTC+TGG - chr4_1:50240199-50240218 None:intergenic 55.0%
GGGTTTCCTTGGCCACATCA+AGG - chr4_1:50240249-50240268 None:intergenic 55.0%
GCGGCTCTTGAGAAAGTTGG+GGG + chr4_1:50240736-50240755 Msa0553290:CDS 55.0%
GAGAGTGGATGGCCATCTGA+TGG + chr4_1:50240784-50240803 Msa0553290:CDS 55.0%
AGTGGATGGCCATCTGATGG+TGG + chr4_1:50240787-50240806 Msa0553290:CDS 55.0%
TAGGCCCTTGTTGGACGGTC+TGG - chr4_1:50235270-50235289 None:intergenic 60.0%
GACCGTCCAACAAGGGCCTA+CGG + chr4_1:50235270-50235289 Msa0553290:intron 60.0%
! GTCGGCCCGATGGGCTTAAT+AGG - chr4_1:50235408-50235427 None:intergenic 60.0%
ACGGGTAATAGGCCAGGCTC+AGG + chr4_1:50235735-50235754 Msa0553290:intron 60.0%
AAGGTCCGGGGTTCGAACCT+CGG + chr4_1:50235852-50235871 Msa0553290:intron 60.0%
GGCCGTAGGCCCTTGTTGGA+CGG - chr4_1:50235275-50235294 None:intergenic 65.0%
GCTAGGCCGTAGGCCCTTGT+TGG - chr4_1:50235279-50235298 None:intergenic 65.0%
AGGCCTTACAAAGCCCGGCC+CGG + chr4_1:50235786-50235805 Msa0553290:intron 65.0%
!! GGGTGGAAATGGGCTAGGCC+GGG - chr4_1:50235807-50235826 None:intergenic 65.0%
!! GGGGTGGAAATGGGCTAGGC+CGG - chr4_1:50235808-50235827 None:intergenic 65.0%
GATGGCCGAGGTTCGAACCC+CGG - chr4_1:50235860-50235879 None:intergenic 65.0%
! AGGCCGGGCCGGGCTTTGTA+AGG - chr4_1:50235792-50235811 None:intergenic 70.0%
!! GAAATGGGCTAGGCCGGGCC+GGG - chr4_1:50235802-50235821 None:intergenic 70.0%
!! GGAAATGGGCTAGGCCGGGC+CGG - chr4_1:50235803-50235822 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 50233910 50241194 50233910 ID=Msa0553290;Name=Msa0553290
chr4_1 mRNA 50233910 50241194 50233910 ID=Msa0553290-mRNA-1;Parent=Msa0553290;Name=Msa0553290-mRNA-1;_AED=0.36;_eAED=0.36;_QI=244|1|1|1|0|0|2|177|329
chr4_1 exon 50233910 50234208 50233910 ID=Msa0553290-mRNA-1:exon:14222;Parent=Msa0553290-mRNA-1
chr4_1 exon 50240083 50241194 50240083 ID=Msa0553290-mRNA-1:exon:14223;Parent=Msa0553290-mRNA-1
chr4_1 five_prime_UTR 50233910 50234153 50233910 ID=Msa0553290-mRNA-1:five_prime_utr;Parent=Msa0553290-mRNA-1
chr4_1 CDS 50234154 50234208 50234154 ID=Msa0553290-mRNA-1:cds;Parent=Msa0553290-mRNA-1
chr4_1 CDS 50240083 50241017 50240083 ID=Msa0553290-mRNA-1:cds;Parent=Msa0553290-mRNA-1
chr4_1 three_prime_UTR 50241018 50241194 50241018 ID=Msa0553290-mRNA-1:three_prime_utr;Parent=Msa0553290-mRNA-1
Gene Sequence

>Msa0553290

ATGTCTATCATTTTTCTACTTGTTGGTATACTGTCCATTGGACTAAAATTTACAGTTGTGCAATCCGTAGGAGTTTGCTATGGAATGCTTGGCAATAATCTACCATCAAGTCAAGAAGTTGTGGATTTATACAAGTCAAATGGCATTGACAAAATGCGTATATACTCCCCAGACGAACAAGCCCTTCAAGCCCTTAAAGGTTCCAACATAGAATTGATCCTTGATGTGGCCAAGGAAACCCTTTCTTCTCTTACAGATGGCAATGAAGCTACAAATTGGGTCCAAAAATATGTGACACCCTATGCTCAAGATGTAAAAATCAAGTACATCACTGTTGGAAATGAAATTAAACCTAATGACAATGAAGCCCAATACATTGCCACTGCCATGCAAAACATTCAAAATGCAATTTCATCAGCAAGTTTACAAGGCCAAATCAAGGTCTCAACAGCAATTGACATGACTTTGATTGGTAATTCATATCCACCTAATGATGGTGTTTTCACTGACCAAGCAAAACAATATTTACAACCAATAATAGACTTCCTAAAGAACAATGGAGCACCACTTCTTGCTAATGTGTATCCATACTTCGCTTATATCGGTAATAAGCAAAGCATTTCTCTTGACTATGCTCTTTTTAAACAACAAGGAAACAATGATGTTGGGTACCAAAACCTCTTTGATGCCCAGTTAGACTCGGTATATGCGGCTCTTGAGAAAGTTGGGGGTTCCGATGTGAAGATAGTTGTGTCCGAGAGTGGATGGCCATCTGATGGTGGAGATAGTGCCTCAACTGACAATGCTTCCACATATTATACTAATTTGATTAATCACGTCAAGAATGGGACTCCTAAGAGACCTGGAGCTATTGAGACTTACTTGTTCGCCATGTTTGATGAAAATCAGAAGACTGGTGCAGCAACCGAACAACATTTTGGTCTCTTTAACCCTGACAAATCATCTAAATATCAAACAAGTTTCAATTGA
Protein sequence

>Msa0553290

MSIIFLLVGILSIGLKFTVVQSVGVCYGMLGNNLPSSQEVVDLYKSNGIDKMRIYSPDEQALQALKGSNIELILDVAKETLSSLTDGNEATNWVQKYVTPYAQDVKIKYITVGNEIKPNDNEAQYIATAMQNIQNAISSASLQGQIKVSTAIDMTLIGNSYPPNDGVFTDQAKQYLQPIIDFLKNNGAPLLANVYPYFAYIGNKQSISLDYALFKQQGNNDVGYQNLFDAQLDSVYAALEKVGGSDVKIVVSESGWPSDGGDSASTDNASTYYTNLINHVKNGTPKRPGAIETYLFAMFDENQKTGAATEQHFGLFNPDKSSKYQTSFN*