Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707360 | XP_013447210.1 | 98.837 | 344 | 4 | 0 | 1 | 344 | 1 | 344 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707360 | sp|Q680C0|GDL62_ARATH | 62.606 | 353 | 119 | 5 | 1 | 344 | 2 | 350 | 1.13e-158 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707360 | A0A072TUX4 | 98.837 | 344 | 4 | 0 | 1 | 344 | 1 | 344 | 0.0 | 709 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039750 | Msa0707360 | 0.859053 | 5.396271e-63 | -8.615850e-47 |
| Msa0044010 | Msa0707360 | 0.809758 | 1.615341e-50 | -8.615850e-47 |
| Msa0044530 | Msa0707360 | -0.822894 | 1.855508e-53 | -8.615850e-47 |
| Msa0091220 | Msa0707360 | -0.822350 | 2.483183e-53 | -8.615850e-47 |
| Msa0091240 | Msa0707360 | -0.822287 | 2.568191e-53 | -8.615850e-47 |
| Msa0092220 | Msa0707360 | 0.801130 | 1.040829e-48 | -8.615850e-47 |
| Msa0610690 | Msa0707360 | 0.822462 | 2.338694e-53 | -8.615850e-47 |
| Msa0630440 | Msa0707360 | 0.819199 | 1.316777e-52 | -8.615850e-47 |
| Msa0659020 | Msa0707360 | -0.812432 | 4.253193e-51 | -8.615850e-47 |
| Msa0661480 | Msa0707360 | 0.807964 | 3.907324e-50 | -8.615850e-47 |
| Msa0689830 | Msa0707360 | 0.819094 | 1.390742e-52 | -8.615850e-47 |
| Msa0703950 | Msa0707360 | 0.813158 | 2.948811e-51 | -8.615850e-47 |
| Msa0704690 | Msa0707360 | 0.810204 | 1.294990e-50 | -8.615850e-47 |
| Msa0707360 | Msa0745140 | 0.809213 | 2.114331e-50 | -8.615850e-47 |
| Msa0707360 | Msa0746650 | 0.845864 | 3.112661e-59 | -8.615850e-47 |
| Msa0707360 | Msa0776640 | 0.810085 | 1.373388e-50 | -8.615850e-47 |
| Msa0707360 | Msa0825920 | 0.806416 | 8.314745e-50 | -8.615850e-47 |
| Msa0707360 | Msa0865420 | 0.814911 | 1.210232e-51 | -8.615850e-47 |
| Msa0707360 | Msa0926240 | 0.801099 | 1.056376e-48 | -8.615850e-47 |
| Msa0707360 | Msa0930770 | 0.801887 | 7.281801e-49 | -8.615850e-47 |
| Msa0707360 | Msa0980890 | 0.814211 | 1.729674e-51 | -8.615850e-47 |
| Msa0707360 | Msa0981670 | 0.808919 | 2.444471e-50 | -8.615850e-47 |
| Msa0707360 | Msa0982730 | 0.842987 | 1.847844e-58 | -8.615850e-47 |
| Msa0707360 | Msa1014550 | -0.805110 | 1.563841e-49 | -8.615850e-47 |
| Msa0707360 | Msa1039440 | -0.803295 | 3.731174e-49 | -8.615850e-47 |
| Msa0707360 | Msa1041060 | 0.818496 | 1.901859e-52 | -8.615850e-47 |
| Msa0707360 | Msa1055520 | -0.800140 | 1.657085e-48 | -8.615850e-47 |
| Msa0707360 | Msa1093190 | -0.804334 | 2.270361e-49 | -8.615850e-47 |
| Msa0707360 | Msa1094810 | 0.803144 | 4.010980e-49 | -8.615850e-47 |
| Msa0707360 | Msa1124210 | 0.805001 | 1.648255e-49 | -8.615850e-47 |
| Msa0707360 | Msa1165460 | 0.821163 | 4.673254e-53 | -8.615850e-47 |
| Msa0707360 | Msa1190770 | 0.804500 | 2.096397e-49 | -8.615850e-47 |
| Msa0707360 | Msa1197720 | 0.825759 | 3.934655e-54 | -8.615850e-47 |
| Msa0707360 | Msa1220580 | 0.831993 | 1.217708e-55 | -8.615850e-47 |
| Msa0707360 | Msa1251410 | 0.824565 | 7.533855e-54 | -8.615850e-47 |
| Msa0707360 | Msa1294280 | 0.805533 | 1.275299e-49 | -8.615850e-47 |
| Msa0707360 | Msa1334560 | 0.830835 | 2.348057e-55 | -8.615850e-47 |
| Msa0707360 | Msa1347390 | 0.818224 | 2.191424e-52 | -8.615850e-47 |
| Msa0707360 | Msa1363280 | -0.813141 | 2.974845e-51 | -8.615850e-47 |
| Msa0707360 | Msa1372000 | 0.802701 | 4.952319e-49 | -8.615850e-47 |
| Msa0707360 | Msa1379940 | 0.807852 | 4.127894e-50 | -8.615850e-47 |
| Msa0707360 | Msa1387570 | 0.823245 | 1.536401e-53 | -8.615850e-47 |
| Msa0707360 | Msa1391500 | 0.806914 | 6.526605e-50 | -8.615850e-47 |
| Msa0707360 | Msa1421630 | 0.805793 | 1.124448e-49 | -8.615850e-47 |
| Msa0707360 | Msa1428230 | -0.816175 | 6.333067e-52 | -8.615850e-47 |
| Msa0707360 | Msa1457770 | 0.810954 | 8.913908e-51 | -8.615850e-47 |
| Msa0707360 | Msa1457890 | 0.801337 | 9.443033e-49 | -8.615850e-47 |
| Msa0707360 | Msa1462780 | 0.802696 | 4.963299e-49 | -8.615850e-47 |
| Msa0124910 | Msa0707360 | 0.812060 | 5.125293e-51 | -8.615850e-47 |
| Msa0142430 | Msa0707360 | 0.805416 | 1.349193e-49 | -8.615850e-47 |
| Msa0183310 | Msa0707360 | -0.827496 | 1.515156e-54 | -8.615850e-47 |
| Msa0192050 | Msa0707360 | 0.822462 | 2.338694e-53 | -8.615850e-47 |
| Msa0192250 | Msa0707360 | 0.840550 | 8.128774e-58 | -8.615850e-47 |
| Msa0195230 | Msa0707360 | 0.843254 | 1.568957e-58 | -8.615850e-47 |
| Msa0195260 | Msa0707360 | 0.838534 | 2.715722e-57 | -8.615850e-47 |
| Msa0204950 | Msa0707360 | 0.803598 | 3.229982e-49 | -8.615850e-47 |
| Msa0234170 | Msa0707360 | 0.819608 | 1.062191e-52 | -8.615850e-47 |
| Msa0368640 | Msa0707360 | 0.819579 | 1.078485e-52 | -8.615850e-47 |
| Msa0384590 | Msa0707360 | 0.811087 | 8.343445e-51 | -8.615850e-47 |
| Msa0385030 | Msa0707360 | 0.810320 | 1.222116e-50 | -8.615850e-47 |
| Msa0386880 | Msa0707360 | 0.803192 | 3.919443e-49 | -8.615850e-47 |
| Msa0389690 | Msa0707360 | 0.803851 | 2.861874e-49 | -8.615850e-47 |
| Msa0416210 | Msa0707360 | 0.805466 | 1.316801e-49 | -8.615850e-47 |
| Msa0433630 | Msa0707360 | 0.800748 | 1.245878e-48 | -8.615850e-47 |
| Msa0436440 | Msa0707360 | 0.815261 | 1.012403e-51 | -8.615850e-47 |
| Msa0479480 | Msa0707360 | 0.804473 | 2.124514e-49 | -8.615850e-47 |
| Msa0480280 | Msa0707360 | 0.829860 | 4.063942e-55 | -8.615850e-47 |
| Msa0240540 | Msa0707360 | 0.816500 | 5.355960e-52 | -8.615850e-47 |
| Msa0272790 | Msa0707360 | 0.805263 | 1.452639e-49 | -8.615850e-47 |
| Msa0279000 | Msa0707360 | 0.828996 | 6.588362e-55 | -8.615850e-47 |
| Msa0307430 | Msa0707360 | 0.810298 | 1.235650e-50 | -8.615850e-47 |
| Msa0320600 | Msa0707360 | 0.801139 | 1.036517e-48 | -8.615850e-47 |
| Msa0506750 | Msa0707360 | 0.831389 | 1.716311e-55 | -8.615850e-47 |
| Msa0518410 | Msa0707360 | 0.804575 | 2.022969e-49 | -8.615850e-47 |
| Msa0521510 | Msa0707360 | 0.813861 | 2.065660e-51 | -8.615850e-47 |
| Msa0521530 | Msa0707360 | 0.812955 | 3.266860e-51 | -8.615850e-47 |
| Msa0521610 | Msa0707360 | 0.824621 | 7.310832e-54 | -8.615850e-47 |
| Msa0522540 | Msa0707360 | 0.805780 | 1.131504e-49 | -8.615850e-47 |
| Msa0526150 | Msa0707360 | 0.831705 | 1.434877e-55 | -8.615850e-47 |
| Msa0567610 | Msa0707360 | 0.803091 | 4.112137e-49 | -8.615850e-47 |
| Msa0572360 | Msa0707360 | 0.812799 | 3.533868e-51 | -8.615850e-47 |
| Msa0572760 | Msa0707360 | 0.849147 | 3.896083e-60 | -8.615850e-47 |
| Msa0579080 | Msa0707360 | 0.840892 | 6.614279e-58 | -8.615850e-47 |
| Msa0579160 | Msa0707360 | 0.821726 | 3.463209e-53 | -8.615850e-47 |
| Msa0579220 | Msa0707360 | 0.826798 | 2.225759e-54 | -8.615850e-47 |
| Msa0601380 | Msa0707360 | 0.833769 | 4.408012e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707360 | MtrunA17_Chr8g0388281 | 98.837 | 344 | 4 | 0 | 1 | 344 | 1 | 344 | 0.0 | 709 |
| Msa0707360 | MtrunA17_Chr5g0396551 | 71.304 | 345 | 95 | 2 | 1 | 343 | 1 | 343 | 0.0 | 516 |
| Msa0707360 | MtrunA17_Chr5g0410331 | 67.147 | 347 | 108 | 2 | 1 | 344 | 1 | 344 | 9.95e-171 | 478 |
| Msa0707360 | MtrunA17_Chr3g0096121 | 32.507 | 363 | 203 | 8 | 7 | 344 | 40 | 385 | 1.57e-57 | 191 |
| Msa0707360 | MtrunA17_Chr5g0442991 | 31.978 | 369 | 195 | 9 | 6 | 344 | 15 | 357 | 3.39e-56 | 187 |
| Msa0707360 | MtrunA17_Chr5g0443021 | 29.326 | 341 | 196 | 6 | 21 | 339 | 35 | 352 | 1.58e-38 | 143 |
| Msa0707360 | MtrunA17_Chr5g0443011 | 29.352 | 293 | 167 | 7 | 64 | 339 | 12 | 281 | 5.56e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707360 | AT4G10955.2 | 62.606 | 353 | 119 | 5 | 1 | 344 | 2 | 350 | 1.15e-159 | 451 |
| Msa0707360 | AT4G10955.1 | 62.606 | 353 | 119 | 5 | 1 | 344 | 2 | 350 | 1.15e-159 | 451 |
| Msa0707360 | AT2G05260.1 | 58.056 | 360 | 133 | 4 | 1 | 344 | 1 | 358 | 3.53e-146 | 417 |
| Msa0707360 | AT5G24230.1 | 52.408 | 353 | 158 | 3 | 1 | 343 | 15 | 367 | 4.85e-126 | 366 |
| Msa0707360 | AT5G24230.3 | 52.408 | 353 | 158 | 3 | 1 | 343 | 15 | 367 | 4.85e-126 | 366 |
| Msa0707360 | AT5G24230.2 | 52.408 | 353 | 158 | 3 | 1 | 343 | 15 | 367 | 4.85e-126 | 366 |
| Msa0707360 | AT2G05260.2 | 60.000 | 285 | 103 | 2 | 1 | 276 | 1 | 283 | 1.30e-118 | 344 |
| Msa0707360 | AT5G24180.1 | 47.953 | 342 | 165 | 5 | 2 | 336 | 17 | 352 | 7.11e-105 | 312 |
| Msa0707360 | AT5G24220.1 | 45.401 | 337 | 172 | 6 | 3 | 333 | 20 | 350 | 8.29e-100 | 300 |
| Msa0707360 | AT5G24200.2 | 43.228 | 347 | 172 | 6 | 1 | 334 | 1 | 335 | 3.41e-84 | 258 |
| Msa0707360 | AT5G24200.3 | 43.228 | 347 | 172 | 6 | 1 | 334 | 1 | 335 | 3.41e-84 | 258 |
| Msa0707360 | AT5G24200.1 | 43.228 | 347 | 172 | 6 | 1 | 334 | 1 | 335 | 3.41e-84 | 258 |
| Msa0707360 | AT5G24210.2 | 38.764 | 356 | 192 | 8 | 2 | 343 | 7 | 350 | 6.63e-67 | 214 |
| Msa0707360 | AT5G24210.3 | 38.764 | 356 | 192 | 8 | 2 | 343 | 7 | 350 | 6.63e-67 | 214 |
| Msa0707360 | AT5G24210.1 | 38.764 | 356 | 192 | 8 | 2 | 343 | 7 | 350 | 6.63e-67 | 214 |
| Msa0707360 | AT5G50890.1 | 29.737 | 380 | 196 | 11 | 7 | 344 | 45 | 395 | 3.48e-51 | 175 |
| Msa0707360 | AT5G24190.1 | 40.084 | 237 | 119 | 5 | 120 | 339 | 3 | 233 | 1.06e-49 | 167 |
Find 118 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTACTATTGTAATTTAT+TGG | 0.144809 | 4_4:-80589176 | Msa0707360:three_prime_UTR |
| TTCAATAAAATTGCCATTCT+TGG | 0.149620 | 4_4:+80589688 | None:intergenic |
| CTTATGGAATATTGTTATTA+TGG | 0.167503 | 4_4:-80588919 | Msa0707360:three_prime_UTR |
| AATAACGTTGTTAGATGTTT+TGG | 0.210081 | 4_4:+80591945 | None:intergenic |
| AATTACTATTGTAATTTATT+GGG | 0.220371 | 4_4:-80589175 | Msa0707360:three_prime_UTR |
| GAAGACCTTGTCGGATAAAA+TGG | 0.245157 | 4_4:+80589843 | None:intergenic |
| CACGCAGACAAAGCGGTAAA+TGG | 0.291245 | 4_4:+80589509 | None:intergenic |
| GATGTTGATTCTTCAATCTT+TGG | 0.297635 | 4_4:-80589998 | Msa0707360:CDS |
| TTATTGGGGATCTCTGATTC+TGG | 0.309037 | 4_4:-80589160 | Msa0707360:three_prime_UTR |
| GCCTATTGATGGGTGCGTTT+GGG | 0.317566 | 4_4:-80589352 | Msa0707360:CDS |
| GGCCTATTGATGGGTGCGTT+TGG | 0.329441 | 4_4:-80589353 | Msa0707360:CDS |
| CATCTAACAACGTTATTGTT+TGG | 0.334020 | 4_4:-80591939 | Msa0707360:five_prime_UTR |
| TCAGCAATGGCGTTGCTTAC+CGG | 0.343704 | 4_4:-80589722 | Msa0707360:CDS |
| GCAACCGACATTCGATGATA+TGG | 0.350071 | 4_4:+80590148 | None:intergenic |
| TGCTCCACTTGAGAAGATTA+AGG | 0.353443 | 4_4:-80589636 | Msa0707360:CDS |
| GTGGACGAAGTAGCTGAAAA+TGG | 0.354438 | 4_4:+80590029 | None:intergenic |
| GATTCAAATGTTTGGTTAGC+TGG | 0.363493 | 4_4:-80589758 | Msa0707360:CDS |
| CATATATGTTCAGAGTATAT+TGG | 0.378678 | 4_4:-80589455 | Msa0707360:CDS |
| AATGTCGGTTGCTGCTTGTT+TGG | 0.384074 | 4_4:-80590137 | Msa0707360:CDS |
| CAATATACTCTGAACATATA+TGG | 0.388402 | 4_4:+80589456 | None:intergenic |
| CAAATCCTTTGGCTGCTGCT+TGG | 0.403289 | 4_4:+80589541 | None:intergenic |
| CAGATGCTCTCGCGCCACCT+TGG | 0.409462 | 4_4:-80590063 | Msa0707360:CDS |
| CAGCAATGGCGTTGCTTACC+GGG | 0.409487 | 4_4:-80589721 | Msa0707360:CDS |
| TGGAATATTGTTATTATGGT+GGG | 0.414312 | 4_4:-80588915 | Msa0707360:three_prime_UTR |
| CCGTAGGTGATTCAAATGTT+TGG | 0.418741 | 4_4:-80589766 | Msa0707360:CDS |
| AAGATTCATTTAAACTAAGC+AGG | 0.422694 | 4_4:-80589118 | Msa0707360:three_prime_UTR |
| ATGCTCTCGCGCCACCTTGG+TGG | 0.428156 | 4_4:-80590060 | Msa0707360:CDS |
| CTCACTTGGTGGCCTATTGA+TGG | 0.435218 | 4_4:-80589363 | Msa0707360:CDS |
| CTGCTTGGCTTTCATAGCTA+AGG | 0.439296 | 4_4:+80589556 | None:intergenic |
| GGATCAATGATCAAATCCTT+TGG | 0.440563 | 4_4:+80589530 | None:intergenic |
| ACCTATCTTCTATAAACTTA+CGG | 0.445185 | 4_4:+80589071 | None:intergenic |
| ACGCGAAACTGAGTGTGCTT+TGG | 0.446648 | 4_4:+80589883 | None:intergenic |
| CGTTATGTGATTGCCTTTCG+AGG | 0.456609 | 4_4:-80589914 | Msa0707360:CDS |
| GTTTATAGAAGATAGGTGTC+TGG | 0.461073 | 4_4:-80589065 | Msa0707360:three_prime_UTR |
| TGGTTAGCTGGACACTCCCT+AGG | 0.462096 | 4_4:-80589746 | Msa0707360:CDS |
| ATGGAATATTGTTATTATGG+TGG | 0.464338 | 4_4:-80588916 | Msa0707360:three_prime_UTR |
| TCCCAAACGCACCCATCAAT+AGG | 0.464827 | 4_4:+80589351 | None:intergenic |
| ACAGTATCAAGTGTTTGAAC+TGG | 0.467453 | 4_4:-80589036 | Msa0707360:three_prime_UTR |
| AAGGTGTTTACATTCTAGAA+AGG | 0.471907 | 4_4:-80590111 | Msa0707360:CDS |
| AATTGTAGAGCTTGTATTCG+AGG | 0.472190 | 4_4:+80589213 | None:intergenic |
| TTGTATTCGAGGCGCAAGTC+GGG | 0.477930 | 4_4:+80589224 | None:intergenic |
| GGAATATTGTTATTATGGTG+GGG | 0.485557 | 4_4:-80588914 | Msa0707360:three_prime_UTR |
| GAATATTGTTATTATGGTGG+GGG | 0.492658 | 4_4:-80588913 | Msa0707360:three_prime_UTR |
| TCAAGTGGAGCAGATACAAA+TGG | 0.493988 | 4_4:+80589647 | None:intergenic |
| TCTGAAGTTACTGATAAGAA+AGG | 0.495277 | 4_4:-80590969 | Msa0707360:intron |
| AGGAACAACGTCGTATGATC+CGG | 0.502570 | 4_4:+80591982 | None:intergenic |
| AAGTTTGATGAAGACCTTGT+CGG | 0.506452 | 4_4:+80589834 | None:intergenic |
| GTATCATTACATTGTGATGA+TGG | 0.508058 | 4_4:+80589953 | None:intergenic |
| GCAACGCCATTGCTGATCCT+AGG | 0.511330 | 4_4:+80589729 | None:intergenic |
| AACAGCTTGAATAGCTATGT+TGG | 0.513106 | 4_4:+80589805 | None:intergenic |
| AGGTGTTTACATTCTAGAAA+GGG | 0.514102 | 4_4:-80590110 | Msa0707360:CDS |
| ATTTACCGCTTTGTCTGCGT+GGG | 0.514949 | 4_4:-80589507 | Msa0707360:CDS |
| CATTTACCGCTTTGTCTGCG+TGG | 0.516796 | 4_4:-80589508 | Msa0707360:CDS |
| TTTATAGAAGATAGGTGTCT+GGG | 0.517869 | 4_4:-80589064 | Msa0707360:three_prime_UTR |
| CTTGTATTCGAGGCGCAAGT+CGG | 0.518354 | 4_4:+80589223 | None:intergenic |
| GTTGCTGCTTGTTTGGTCCA+AGG | 0.521199 | 4_4:-80590130 | Msa0707360:CDS |
| GGGAAAACCATGGCCAAGAA+TGG | 0.525436 | 4_4:-80589701 | Msa0707360:CDS |
| AAAATTGCCATTCTTGGCCA+TGG | 0.526431 | 4_4:+80589694 | None:intergenic |
| ATTACTATTGTAATTTATTG+GGG | 0.528224 | 4_4:-80589174 | Msa0707360:three_prime_UTR |
| GCTGGCAGCGTGATAACAGC+TGG | 0.531939 | 4_4:-80589584 | Msa0707360:CDS |
| TTTACATTCTAGAAAGGGAC+CGG | 0.537140 | 4_4:-80590105 | Msa0707360:CDS |
| CAACGCCATTGCTGATCCTA+GGG | 0.547334 | 4_4:+80589730 | None:intergenic |
| GACTGTCATGGCTTCTGAGA+GGG | 0.548702 | 4_4:-80590931 | Msa0707360:exon |
| GATAAGGAGGCCACTGGCGA+GGG | 0.554605 | 4_4:+80588879 | None:intergenic |
| CATTCTAGAAAGGGACCGGC+AGG | 0.558168 | 4_4:-80590101 | Msa0707360:CDS |
| TCTGATTTCAAAGAAGCTCA+TGG | 0.558600 | 4_4:-80589266 | Msa0707360:CDS |
| CTGATTTCAAAGAAGCTCAT+GGG | 0.558680 | 4_4:-80589265 | Msa0707360:CDS |
| TTTCTAGAATGTAAACACCT+TGG | 0.563258 | 4_4:+80590113 | None:intergenic |
| ATGTCAAAGAAGACAAGTAC+CGG | 0.567461 | 4_4:-80592001 | Msa0707360:five_prime_UTR |
| GCAACTCAAAACTCACTTGG+TGG | 0.567730 | 4_4:-80589374 | Msa0707360:CDS |
| AAACACGGGATTCGATTCGC+TGG | 0.570003 | 4_4:-80589602 | Msa0707360:CDS |
| TCATCCTTAATCTTCTCAAG+TGG | 0.570573 | 4_4:+80589632 | None:intergenic |
| GCTTCTTTGAAATCAGATGC+AGG | 0.570903 | 4_4:+80589272 | None:intergenic |
| CCAAACATTTGAATCACCTA+CGG | 0.570951 | 4_4:+80589766 | None:intergenic |
| ATTGATGGGTGCGTTTGGGA+AGG | 0.571774 | 4_4:-80589348 | Msa0707360:CDS |
| TCTGAACATATATGGTCAGA+TGG | 0.574886 | 4_4:+80589464 | None:intergenic |
| TCCGTAAGTTTATAGAAGAT+AGG | 0.576909 | 4_4:-80589072 | Msa0707360:three_prime_UTR |
| TCACAGAAGCTGAAGGAATG+AGG | 0.588402 | 4_4:+80589309 | None:intergenic |
| GCTGAAGGAATGAGGTGCAA+TGG | 0.593159 | 4_4:+80589317 | None:intergenic |
| AAAATGGAGGACATTGGCGC+CGG | 0.597776 | 4_4:-80589413 | Msa0707360:CDS |
| TCACTTGGTGGCCTATTGAT+GGG | 0.598019 | 4_4:-80589362 | Msa0707360:CDS |
| GAAAGCCAAGCAGCAGCCAA+AGG | 0.603055 | 4_4:-80589546 | Msa0707360:CDS |
| AAAACATAAGTCAAATGCAA+GGG | 0.606793 | 4_4:+80590888 | None:intergenic |
| AGATTCATTTAAACTAAGCA+GGG | 0.607035 | 4_4:-80589117 | Msa0707360:three_prime_UTR |
| CTCATGGGATTCATCAGTGG+TGG | 0.608672 | 4_4:-80589250 | Msa0707360:CDS |
| CGAAAGGCAATCACATAACG+TGG | 0.609030 | 4_4:+80589917 | None:intergenic |
| ACTGATAAGAAAGGCGAGGA+GGG | 0.610058 | 4_4:-80590960 | Msa0707360:five_prime_UTR |
| GAATCAACATCATCTACAAG+TGG | 0.610473 | 4_4:+80590010 | None:intergenic |
| TAAAACATAAGTCAAATGCA+AGG | 0.616175 | 4_4:+80590887 | None:intergenic |
| TTAGCAACTCAAAACTCACT+TGG | 0.622601 | 4_4:-80589377 | Msa0707360:CDS |
| TATTCAAGCTGTTCGAAACA+CGG | 0.626771 | 4_4:-80589795 | Msa0707360:CDS |
| TCATTACATTGTGATGATGG+AGG | 0.631323 | 4_4:+80589956 | None:intergenic |
| TACTGATAAGAAAGGCGAGG+AGG | 0.631717 | 4_4:-80590961 | Msa0707360:five_prime_UTR |
| TTAACTGTCACAGAAGCTGA+AGG | 0.632621 | 4_4:+80589302 | None:intergenic |
| GGAGGGTGCATAGACTGTCA+TGG | 0.636461 | 4_4:-80590943 | Msa0707360:exon |
| TTGGCGCCGGAGTGATCGAA+AGG | 0.637059 | 4_4:-80589400 | Msa0707360:CDS |
| TTTGGTTAGAGTTCCTCGAA+AGG | 0.637620 | 4_4:+80589901 | None:intergenic |
| GACCGGCAGGAAAAGCGTGA+AGG | 0.642700 | 4_4:-80590088 | Msa0707360:CDS |
| ATGGATTCACAAACAAACAC+GGG | 0.643233 | 4_4:+80589483 | None:intergenic |
| ATATTGGATACTTCGAACAC+AGG | 0.644924 | 4_4:-80589439 | Msa0707360:CDS |
| ATCTTACGTTAGAATCTGAG+AGG | 0.649802 | 4_4:+80591910 | None:intergenic |
| GTTGCTTACCGGGAAAACCA+TGG | 0.650087 | 4_4:-80589711 | Msa0707360:CDS |
| AGTGGAGCAGATACAAATGG+AGG | 0.652512 | 4_4:+80589650 | None:intergenic |
| AAGCTCATGGGATTCATCAG+TGG | 0.657129 | 4_4:-80589253 | Msa0707360:CDS |
| GATGGATTCACAAACAAACA+CGG | 0.657838 | 4_4:+80589482 | None:intergenic |
| TGCTAACCTTTCGATCACTC+CGG | 0.658661 | 4_4:+80589394 | None:intergenic |
| TAATCCATATCATCGAATGT+CGG | 0.661924 | 4_4:-80590152 | Msa0707360:CDS |
| GTGGAGCAGATACAAATGGA+GGG | 0.663461 | 4_4:+80589651 | None:intergenic |
| CGAAACACGGTAGCAACCGT+AGG | 0.667181 | 4_4:-80589782 | Msa0707360:CDS |
| AGGATGAGAGAGTAAAACAC+GGG | 0.670989 | 4_4:-80589616 | Msa0707360:CDS |
| AGACTGTCATGGCTTCTGAG+AGG | 0.679942 | 4_4:-80590932 | Msa0707360:exon |
| AGTTACTGATAAGAAAGGCG+AGG | 0.687145 | 4_4:-80590964 | Msa0707360:five_prime_UTR |
| TCTTACGTTAGAATCTGAGA+GGG | 0.687285 | 4_4:+80591911 | None:intergenic |
| TTATAGAAGATAGGTGTCTG+GGG | 0.689394 | 4_4:-80589063 | Msa0707360:three_prime_UTR |
| AAGGATGAGAGAGTAAAACA+CGG | 0.693045 | 4_4:-80589617 | Msa0707360:CDS |
| ACACTCCCTAGGATCAGCAA+TGG | 0.700419 | 4_4:-80589735 | Msa0707360:CDS |
| TCAAATGCAAGGGTCCTGAG+AGG | 0.714520 | 4_4:+80590898 | None:intergenic |
| CGGGACCCACGCAGACAAAG+CGG | 0.719734 | 4_4:+80589502 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATGAATTTGATTTTTA+AGG | + | chr4_4:80589410-80589429 | None:intergenic | 10.0% |
| !! | AATTAATCAAGTAAATAAAA+GGG | + | chr4_4:80589692-80589711 | None:intergenic | 10.0% |
| !! | AAATTAATCAAGTAAATAAA+AGG | + | chr4_4:80589693-80589712 | None:intergenic | 10.0% |
| !! | TAATTACTATTGTAATTTAT+TGG | - | chr4_4:80591754-80591773 | Msa0707360:intron | 10.0% |
| !! | AATTACTATTGTAATTTATT+GGG | - | chr4_4:80591755-80591774 | Msa0707360:intron | 10.0% |
| !!! | TAATTATTTGATTTTACTTA+TGG | - | chr4_4:80591919-80591938 | Msa0707360:five_prime_UTR | 10.0% |
| !! | GATTGTAAAAAAATTCAAAA+AGG | + | chr4_4:80589941-80589960 | None:intergenic | 15.0% |
| !! | TTCTGTTTATTAAAAACTTA+AGG | - | chr4_4:80590326-80590345 | Msa0707360:intron | 15.0% |
| !! | GATATGATATATACATATAA+TGG | + | chr4_4:80590728-80590747 | None:intergenic | 15.0% |
| !! | ATTACTATTGTAATTTATTG+GGG | - | chr4_4:80591756-80591775 | Msa0707360:intron | 15.0% |
| !! | TTGAAAGAATTAAATTTGAC+CGG | + | chr4_4:80589311-80589330 | None:intergenic | 20.0% |
| !! | TAAATGTAGAGAAGAAAAAT+AGG | + | chr4_4:80590290-80590309 | None:intergenic | 20.0% |
| !! | GTTTATTAAAAACTTAAGGT+AGG | - | chr4_4:80590330-80590349 | Msa0707360:intron | 20.0% |
| !! | AATCCTCATATATAACTATT+GGG | + | chr4_4:80590367-80590386 | None:intergenic | 20.0% |
| !! | CTTAGGAAAATACTTATAAT+AGG | + | chr4_4:80590406-80590425 | None:intergenic | 20.0% |
| !!! | ATACATATAATGGAAAAATG+TGG | + | chr4_4:80590718-80590737 | None:intergenic | 20.0% |
| !! | AAAAACAATTGTCAAATTTC+TGG | + | chr4_4:80591990-80592009 | None:intergenic | 20.0% |
| !!! | TTGACAATTGTTTTTTCTTA+TGG | - | chr4_4:80591995-80592014 | Msa0707360:five_prime_UTR | 20.0% |
| !!! | CTTATGGAATATTGTTATTA+TGG | - | chr4_4:80592011-80592030 | Msa0707360:five_prime_UTR | 20.0% |
| ! | CAACTAAAAAAGTGATATGT+CGG | - | chr4_4:80588902-80588921 | Msa0707360:three_prime_UTR | 25.0% |
| !! | AATAACGTTGTTAGATGTTT+TGG | + | chr4_4:80588988-80589007 | None:intergenic | 25.0% |
| ! | TGAAAGAATTAAATTTGACC+GGG | + | chr4_4:80589310-80589329 | None:intergenic | 25.0% |
| !!! | ATTTTTAAGGTATCAGATTC+TGG | + | chr4_4:80589397-80589416 | None:intergenic | 25.0% |
| ! | TTGAATTGTCAAACATGTTA+TGG | - | chr4_4:80589721-80589740 | Msa0707360:CDS | 25.0% |
| ! | TGAATTGTCAAACATGTTAT+GGG | - | chr4_4:80589722-80589741 | Msa0707360:CDS | 25.0% |
| ! | ACATACGTTGTTAACTAAAA+TGG | - | chr4_4:80589786-80589805 | Msa0707360:CDS | 25.0% |
| !! | TGATTCAGTTTATCTTGTTT+AGG | - | chr4_4:80589840-80589859 | Msa0707360:CDS | 25.0% |
| !! | GATTCAGTTTATCTTGTTTA+GGG | - | chr4_4:80589841-80589860 | Msa0707360:CDS | 25.0% |
| !! | ATTCAGTTTATCTTGTTTAG+GGG | - | chr4_4:80589842-80589861 | Msa0707360:CDS | 25.0% |
| ! | AAAACATAAGTCAAATGCAA+GGG | + | chr4_4:80590045-80590064 | None:intergenic | 25.0% |
| ! | TAAAACATAAGTCAAATGCA+AGG | + | chr4_4:80590046-80590065 | None:intergenic | 25.0% |
| !!! | TGCATTTGACTTATGTTTTA+TGG | - | chr4_4:80590046-80590065 | Msa0707360:CDS | 25.0% |
| ! | TTGCTCTTTATTATTGTACT+TGG | - | chr4_4:80590098-80590117 | Msa0707360:CDS | 25.0% |
| ! | AATCCCAATAGTTATATATG+AGG | - | chr4_4:80590361-80590380 | Msa0707360:intron | 25.0% |
| ! | CAATCCTCATATATAACTAT+TGG | + | chr4_4:80590368-80590387 | None:intergenic | 25.0% |
| ! | AGGAAAATACTTATAATAGG+TGG | + | chr4_4:80590403-80590422 | None:intergenic | 25.0% |
| ! | CAAATTCTTTACAATGACAT+TGG | + | chr4_4:80590686-80590705 | None:intergenic | 25.0% |
| ! | TTCAATAAAATTGCCATTCT+TGG | + | chr4_4:80591245-80591264 | None:intergenic | 25.0% |
| ! | CAATATACTCTGAACATATA+TGG | + | chr4_4:80591477-80591496 | None:intergenic | 25.0% |
| ! | CATATATGTTCAGAGTATAT+TGG | - | chr4_4:80591475-80591494 | Msa0707360:intron | 25.0% |
| ! | AAGATTCATTTAAACTAAGC+AGG | - | chr4_4:80591812-80591831 | Msa0707360:intron | 25.0% |
| ! | AGATTCATTTAAACTAAGCA+GGG | - | chr4_4:80591813-80591832 | Msa0707360:intron | 25.0% |
| ! | ACCTATCTTCTATAAACTTA+CGG | + | chr4_4:80591862-80591881 | None:intergenic | 25.0% |
| !! | ATGGAATATTGTTATTATGG+TGG | - | chr4_4:80592014-80592033 | Msa0707360:five_prime_UTR | 25.0% |
| !! | TGGAATATTGTTATTATGGT+GGG | - | chr4_4:80592015-80592034 | Msa0707360:five_prime_UTR | 25.0% |
| CATCTAACAACGTTATTGTT+TGG | - | chr4_4:80588991-80589010 | Msa0707360:three_prime_UTR | 30.0% | |
| AGTTGAAGGTGAATGAAAAT+GGG | + | chr4_4:80589054-80589073 | None:intergenic | 30.0% | |
| AAGTTGAAGGTGAATGAAAA+TGG | + | chr4_4:80589055-80589074 | None:intergenic | 30.0% | |
| TGATGATAGAAGAAAGTTGA+AGG | + | chr4_4:80589068-80589087 | None:intergenic | 30.0% | |
| ! | ATGATAATGAAGATAGCGAA+AGG | + | chr4_4:80589201-80589220 | None:intergenic | 30.0% |
| ATGATTCGACGATTTACTAT+TGG | - | chr4_4:80589275-80589294 | Msa0707360:CDS | 30.0% | |
| !! | TCAGATTCTGGAACATATTT+GGG | + | chr4_4:80589385-80589404 | None:intergenic | 30.0% |
| !! | ATCAGATTCTGGAACATATT+TGG | + | chr4_4:80589386-80589405 | None:intergenic | 30.0% |
| !!! | TATCGCAGAGCATTTTTTTA+AGG | - | chr4_4:80589567-80589586 | Msa0707360:CDS | 30.0% |
| ACTTGCACATTATGTTTGTT+TGG | - | chr4_4:80589591-80589610 | Msa0707360:CDS | 30.0% | |
| CTTGCACATTATGTTTGTTT+GGG | - | chr4_4:80589592-80589611 | Msa0707360:CDS | 30.0% | |
| ! | AATGCCAGAAATTTAGCTTA+TGG | - | chr4_4:80589649-80589668 | Msa0707360:CDS | 30.0% |
| ! | ATGCCAGAAATTTAGCTTAT+GGG | - | chr4_4:80589650-80589669 | Msa0707360:CDS | 30.0% |
| ! | TCTGAAGTTACTGATAAGAA+AGG | - | chr4_4:80589961-80589980 | Msa0707360:CDS | 30.0% |
| TTTCACTGTTATGTACAATG+AGG | + | chr4_4:80590198-80590217 | None:intergenic | 30.0% | |
| AATTGGACACTATTTGTCTT+AGG | + | chr4_4:80590423-80590442 | None:intergenic | 30.0% | |
| AAATAGTGTCCAATTCGAAT+CGG | - | chr4_4:80590428-80590447 | Msa0707360:intron | 30.0% | |
| !! | TTTTTGGTACAAAATGTCAC+AGG | + | chr4_4:80590495-80590514 | None:intergenic | 30.0% |
| TGAACATGTGTTTATAAGTG+GGG | + | chr4_4:80590625-80590644 | None:intergenic | 30.0% | |
| CTGAACATGTGTTTATAAGT+GGG | + | chr4_4:80590626-80590645 | None:intergenic | 30.0% | |
| CCTGAATCAAACAGTATAAT+GGG | + | chr4_4:80590756-80590775 | None:intergenic | 30.0% | |
| CCATTATACTGTTTGATTCA+GGG | - | chr4_4:80590754-80590773 | Msa0707360:intron | 30.0% | |
| TAATCCATATCATCGAATGT+CGG | - | chr4_4:80590778-80590797 | Msa0707360:intron | 30.0% | |
| !! | TTTCTAGAATGTAAACACCT+TGG | + | chr4_4:80590820-80590839 | None:intergenic | 30.0% |
| ! | AAGGTGTTTACATTCTAGAA+AGG | - | chr4_4:80590819-80590838 | Msa0707360:intron | 30.0% |
| ! | AGGTGTTTACATTCTAGAAA+GGG | - | chr4_4:80590820-80590839 | Msa0707360:intron | 30.0% |
| !! | GATGTTGATTCTTCAATCTT+TGG | - | chr4_4:80590932-80590951 | Msa0707360:exon | 30.0% |
| GTATCATTACATTGTGATGA+TGG | + | chr4_4:80590980-80590999 | None:intergenic | 30.0% | |
| TCCGTAAGTTTATAGAAGAT+AGG | - | chr4_4:80591858-80591877 | Msa0707360:intron | 30.0% | |
| TTTATAGAAGATAGGTGTCT+GGG | - | chr4_4:80591866-80591885 | Msa0707360:intron | 30.0% | |
| ! | GGAATATTGTTATTATGGTG+GGG | - | chr4_4:80592016-80592035 | Msa0707360:five_prime_UTR | 30.0% |
| ! | GAATATTGTTATTATGGTGG+GGG | - | chr4_4:80592017-80592036 | Msa0707360:five_prime_UTR | 30.0% |
| CTAAAAAAGTGATATGTCGG+TGG | - | chr4_4:80588905-80588924 | Msa0707360:three_prime_UTR | 35.0% | |
| ATGTCAAAGAAGACAAGTAC+CGG | - | chr4_4:80588929-80588948 | Msa0707360:three_prime_UTR | 35.0% | |
| ! | TTTTGGATCTGAGAAGTTTG+AGG | + | chr4_4:80588971-80588990 | None:intergenic | 35.0% |
| TCTTACGTTAGAATCTGAGA+GGG | + | chr4_4:80589022-80589041 | None:intergenic | 35.0% | |
| ATCTTACGTTAGAATCTGAG+AGG | + | chr4_4:80589023-80589042 | None:intergenic | 35.0% | |
| AGGTGAATGAAAATGGGAAA+GGG | + | chr4_4:80589048-80589067 | None:intergenic | 35.0% | |
| AAGGTGAATGAAAATGGGAA+AGG | + | chr4_4:80589049-80589068 | None:intergenic | 35.0% | |
| TACTATTGGATGTGATTTCC+CGG | - | chr4_4:80589289-80589308 | Msa0707360:CDS | 35.0% | |
| !! | TCTCTCTTTGTTATTCCTTC+TGG | - | chr4_4:80589522-80589541 | Msa0707360:CDS | 35.0% |
| !! | CTCTCTTTGTTATTCCTTCT+GGG | - | chr4_4:80589523-80589542 | Msa0707360:CDS | 35.0% |
| !! | TCTCTTTGTTATTCCTTCTG+GGG | - | chr4_4:80589524-80589543 | Msa0707360:CDS | 35.0% |
| ! | TGCCAGAAATTTAGCTTATG+GGG | - | chr4_4:80589651-80589670 | Msa0707360:CDS | 35.0% |
| !! | CTTGGTGGTATGTTTGTTTT+TGG | + | chr4_4:80590511-80590530 | None:intergenic | 35.0% |
| TCACTACATCCCTTTACATT+AGG | - | chr4_4:80590533-80590552 | Msa0707360:intron | 35.0% | |
| CACTACATCCCTTTACATTA+GGG | - | chr4_4:80590534-80590553 | Msa0707360:intron | 35.0% | |
| CTAAGAGACCCTAATGTAAA+GGG | + | chr4_4:80590545-80590564 | None:intergenic | 35.0% | |
| TCTAAGAGACCCTAATGTAA+AGG | + | chr4_4:80590546-80590565 | None:intergenic | 35.0% | |
| GAACATGTGTTTATAAGTGG+GGG | + | chr4_4:80590624-80590643 | None:intergenic | 35.0% | |
| CCTGAACATGTGTTTATAAG+TGG | + | chr4_4:80590627-80590646 | None:intergenic | 35.0% | |
| CCACTTATAAACACATGTTC+AGG | - | chr4_4:80590624-80590643 | Msa0707360:intron | 35.0% | |
| ACTATTAAAGAGTCCCTCAT+TGG | + | chr4_4:80590661-80590680 | None:intergenic | 35.0% | |
| CCCATTATACTGTTTGATTC+AGG | - | chr4_4:80590753-80590772 | Msa0707360:intron | 35.0% | |
| CCCTGAATCAAACAGTATAA+TGG | + | chr4_4:80590757-80590776 | None:intergenic | 35.0% | |
| ! | TTTACATTCTAGAAAGGGAC+CGG | - | chr4_4:80590825-80590844 | Msa0707360:intron | 35.0% |
| AAATGGAAAAATGTCCACCA+AGG | + | chr4_4:80590887-80590906 | None:intergenic | 35.0% | |
| GAATCAACATCATCTACAAG+TGG | + | chr4_4:80590923-80590942 | None:intergenic | 35.0% | |
| !! | TCATTACATTGTGATGATGG+AGG | + | chr4_4:80590977-80590996 | None:intergenic | 35.0% |
| ! | GATATCCATTTTATCCGACA+AGG | - | chr4_4:80591082-80591101 | Msa0707360:intron | 35.0% |
| AAGTTTGATGAAGACCTTGT+CGG | + | chr4_4:80591099-80591118 | None:intergenic | 35.0% | |
| AACAGCTTGAATAGCTATGT+TGG | + | chr4_4:80591128-80591147 | None:intergenic | 35.0% | |
| TATTCAAGCTGTTCGAAACA+CGG | - | chr4_4:80591135-80591154 | Msa0707360:intron | 35.0% | |
| CCAAACATTTGAATCACCTA+CGG | + | chr4_4:80591167-80591186 | None:intergenic | 35.0% | |
| GATTCAAATGTTTGGTTAGC+TGG | - | chr4_4:80591172-80591191 | Msa0707360:intron | 35.0% | |
| TCATCCTTAATCTTCTCAAG+TGG | + | chr4_4:80591301-80591320 | None:intergenic | 35.0% | |
| AAGGATGAGAGAGTAAAACA+CGG | - | chr4_4:80591313-80591332 | Msa0707360:intron | 35.0% | |
| GGATCAATGATCAAATCCTT+TGG | + | chr4_4:80591403-80591422 | None:intergenic | 35.0% | |
| ATGGATTCACAAACAAACAC+GGG | + | chr4_4:80591450-80591469 | None:intergenic | 35.0% | |
| ! | GATGGATTCACAAACAAACA+CGG | + | chr4_4:80591451-80591470 | None:intergenic | 35.0% |
| TCTGAACATATATGGTCAGA+TGG | + | chr4_4:80591469-80591488 | None:intergenic | 35.0% | |
| ATATTGGATACTTCGAACAC+AGG | - | chr4_4:80591491-80591510 | Msa0707360:intron | 35.0% | |
| TTAGCAACTCAAAACTCACT+TGG | - | chr4_4:80591553-80591572 | Msa0707360:intron | 35.0% | |
| TCTGATTTCAAAGAAGCTCA+TGG | - | chr4_4:80591664-80591683 | Msa0707360:intron | 35.0% | |
| CTGATTTCAAAGAAGCTCAT+GGG | - | chr4_4:80591665-80591684 | Msa0707360:intron | 35.0% | |
| AATTGTAGAGCTTGTATTCG+AGG | + | chr4_4:80591720-80591739 | None:intergenic | 35.0% | |
| GTTTATAGAAGATAGGTGTC+TGG | - | chr4_4:80591865-80591884 | Msa0707360:intron | 35.0% | |
| TTATAGAAGATAGGTGTCTG+GGG | - | chr4_4:80591867-80591886 | Msa0707360:intron | 35.0% | |
| ACAGTATCAAGTGTTTGAAC+TGG | - | chr4_4:80591894-80591913 | Msa0707360:intron | 35.0% | |
| GGTGAATGAAAATGGGAAAG+GGG | + | chr4_4:80589047-80589066 | None:intergenic | 40.0% | |
| AATGCTCTGCGATATTCACA+CGG | + | chr4_4:80589561-80589580 | None:intergenic | 40.0% | |
| CACCCCATAAGCTAAATTTC+TGG | + | chr4_4:80589656-80589675 | None:intergenic | 40.0% | |
| GGTTTGATGCATATCATGCA+GGG | - | chr4_4:80589743-80589762 | Msa0707360:CDS | 40.0% | |
| ATGCATATCATGCAGGGTAA+TGG | - | chr4_4:80589749-80589768 | Msa0707360:CDS | 40.0% | |
| TCAGCATGTCTATGCATAGA+TGG | + | chr4_4:80589881-80589900 | None:intergenic | 40.0% | |
| ! | AGACATGCTGAGAATCCTTT+TGG | - | chr4_4:80589890-80589909 | Msa0707360:CDS | 40.0% |
| AGTTACTGATAAGAAAGGCG+AGG | - | chr4_4:80589966-80589985 | Msa0707360:CDS | 40.0% | |
| ! | CTTCTCTGCCTTGTTAGTAT+TGG | - | chr4_4:80590168-80590187 | Msa0707360:intron | 40.0% |
| GAGGACAACCAATACTAACA+AGG | + | chr4_4:80590179-80590198 | None:intergenic | 40.0% | |
| CATCCCTAACTAGATCAATG+CGG | + | chr4_4:80590454-80590473 | None:intergenic | 40.0% | |
| ! | GCATTGATCTAGTTAGGGAT+GGG | - | chr4_4:80590453-80590472 | Msa0707360:intron | 40.0% |
| CATTGATCTAGTTAGGGATG+GGG | - | chr4_4:80590454-80590473 | Msa0707360:intron | 40.0% | |
| TAAAGGGATGTAGTGAAGCT+TGG | + | chr4_4:80590529-80590548 | None:intergenic | 40.0% | |
| TTAGGGTCTCTTAGAAATCG+TGG | - | chr4_4:80590551-80590570 | Msa0707360:intron | 40.0% | |
| GTCTCTTAGAAATCGTGGTT+GGG | - | chr4_4:80590556-80590575 | Msa0707360:intron | 40.0% | |
| TTTGGTTAGAGTTCCTCGAA+AGG | + | chr4_4:80591032-80591051 | None:intergenic | 40.0% | |
| GAAGACCTTGTCGGATAAAA+TGG | + | chr4_4:80591090-80591109 | None:intergenic | 40.0% | |
| CCGTAGGTGATTCAAATGTT+TGG | - | chr4_4:80591164-80591183 | Msa0707360:intron | 40.0% | |
| AAAATTGCCATTCTTGGCCA+TGG | + | chr4_4:80591239-80591258 | None:intergenic | 40.0% | |
| TCAAGTGGAGCAGATACAAA+TGG | + | chr4_4:80591286-80591305 | None:intergenic | 40.0% | |
| TGCTCCACTTGAGAAGATTA+AGG | - | chr4_4:80591294-80591313 | Msa0707360:intron | 40.0% | |
| AGGATGAGAGAGTAAAACAC+GGG | - | chr4_4:80591314-80591333 | Msa0707360:intron | 40.0% | |
| CTTCGAACACAGGAGAAAAA+TGG | - | chr4_4:80591501-80591520 | Msa0707360:intron | 40.0% | |
| AGGAGAAAAATGGAGGACAT+TGG | - | chr4_4:80591511-80591530 | Msa0707360:intron | 40.0% | |
| TTAACTGTCACAGAAGCTGA+AGG | + | chr4_4:80591631-80591650 | None:intergenic | 40.0% | |
| !! | GCTTCTTTGAAATCAGATGC+AGG | + | chr4_4:80591661-80591680 | None:intergenic | 40.0% |
| TTATTGGGGATCTCTGATTC+TGG | - | chr4_4:80591770-80591789 | Msa0707360:intron | 40.0% | |
| ! | TATTGTTATTATGGTGGGGG+CGG | - | chr4_4:80592020-80592039 | Msa0707360:five_prime_UTR | 40.0% |
| AGGAACAACGTCGTATGATC+CGG | + | chr4_4:80588951-80588970 | None:intergenic | 45.0% | |
| GGGTTTGATGCATATCATGC+AGG | - | chr4_4:80589742-80589761 | Msa0707360:CDS | 45.0% | |
| CAGATCAGTACTCAGCCAAA+AGG | + | chr4_4:80589908-80589927 | None:intergenic | 45.0% | |
| TACTGATAAGAAAGGCGAGG+AGG | - | chr4_4:80589969-80589988 | Msa0707360:CDS | 45.0% | |
| ACTGATAAGAAAGGCGAGGA+GGG | - | chr4_4:80589970-80589989 | Msa0707360:CDS | 45.0% | |
| !! | AGGGAAAGTTTTGACCTCTC+AGG | - | chr4_4:80590018-80590037 | Msa0707360:CDS | 45.0% |
| ! | CGCATTGATCTAGTTAGGGA+TGG | - | chr4_4:80590452-80590471 | Msa0707360:intron | 45.0% |
| GGTCTCTTAGAAATCGTGGT+TGG | - | chr4_4:80590555-80590574 | Msa0707360:intron | 45.0% | |
| CTAACACAACCCCACAAAAC+CGG | - | chr4_4:80590580-80590599 | Msa0707360:intron | 45.0% | |
| ! | AGGCCATCTTTTGTCCAATG+AGG | - | chr4_4:80590644-80590663 | Msa0707360:intron | 45.0% |
| ! | GGCCATCTTTTGTCCAATGA+GGG | - | chr4_4:80590645-80590664 | Msa0707360:intron | 45.0% |
| GTCCCTCATTGGACAAAAGA+TGG | + | chr4_4:80590650-80590669 | None:intergenic | 45.0% | |
| GCAACCGACATTCGATGATA+TGG | + | chr4_4:80590785-80590804 | None:intergenic | 45.0% | |
| ! | AATGTCGGTTGCTGCTTGTT+TGG | - | chr4_4:80590793-80590812 | Msa0707360:intron | 45.0% |
| TGGAAAAATGTCCACCAAGG+TGG | + | chr4_4:80590884-80590903 | None:intergenic | 45.0% | |
| GTGGACGAAGTAGCTGAAAA+TGG | + | chr4_4:80590904-80590923 | None:intergenic | 45.0% | |
| CGAAAGGCAATCACATAACG+TGG | + | chr4_4:80591016-80591035 | None:intergenic | 45.0% | |
| CGTTATGTGATTGCCTTTCG+AGG | - | chr4_4:80591016-80591035 | Msa0707360:intron | 45.0% | |
| ! | ATTCTTGGCCATGGTTTTCC+CGG | + | chr4_4:80591230-80591249 | None:intergenic | 45.0% |
| GTGGAGCAGATACAAATGGA+GGG | + | chr4_4:80591282-80591301 | None:intergenic | 45.0% | |
| AGTGGAGCAGATACAAATGG+AGG | + | chr4_4:80591283-80591302 | None:intergenic | 45.0% | |
| ! | CTGCTTGGCTTTCATAGCTA+AGG | + | chr4_4:80591377-80591396 | None:intergenic | 45.0% |
| ATTTACCGCTTTGTCTGCGT+GGG | - | chr4_4:80591423-80591442 | Msa0707360:intron | 45.0% | |
| CGAACACAGGAGAAAAATGG+AGG | - | chr4_4:80591504-80591523 | Msa0707360:intron | 45.0% | |
| TGCTAACCTTTCGATCACTC+CGG | + | chr4_4:80591539-80591558 | None:intergenic | 45.0% | |
| GCAACTCAAAACTCACTTGG+TGG | - | chr4_4:80591556-80591575 | Msa0707360:intron | 45.0% | |
| ! | TCACTTGGTGGCCTATTGAT+GGG | - | chr4_4:80591568-80591587 | Msa0707360:intron | 45.0% |
| TCACAGAAGCTGAAGGAATG+AGG | + | chr4_4:80591624-80591643 | None:intergenic | 45.0% | |
| AAGCTCATGGGATTCATCAG+TGG | - | chr4_4:80591677-80591696 | Msa0707360:intron | 45.0% | |
| AGACTGTCATGGCTTCTGAG+AGG | - | chr4_4:80589998-80590017 | Msa0707360:CDS | 50.0% | |
| ! | GACTGTCATGGCTTCTGAGA+GGG | - | chr4_4:80589999-80590018 | Msa0707360:CDS | 50.0% |
| TCAAATGCAAGGGTCCTGAG+AGG | + | chr4_4:80590035-80590054 | None:intergenic | 50.0% | |
| !! | TCAATGCGGCCGATTCGAAT+TGG | + | chr4_4:80590440-80590459 | None:intergenic | 50.0% |
| ! | TCGGCCGCATTGATCTAGTT+AGG | - | chr4_4:80590447-80590466 | Msa0707360:intron | 50.0% |
| ! | CGGCCGCATTGATCTAGTTA+GGG | - | chr4_4:80590448-80590467 | Msa0707360:intron | 50.0% |
| AGGGATGTAGTGAAGCTTGG+TGG | + | chr4_4:80590526-80590545 | None:intergenic | 50.0% | |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | + | chr4_4:80590582-80590601 | None:intergenic | 50.0% |
| ! | GTTGCTGCTTGTTTGGTCCA+AGG | - | chr4_4:80590800-80590819 | Msa0707360:intron | 50.0% |
| ! | AACCTTCACGCTTTTCCTGC+CGG | + | chr4_4:80590847-80590866 | None:intergenic | 50.0% |
| ACGCGAAACTGAGTGTGCTT+TGG | + | chr4_4:80591050-80591069 | None:intergenic | 50.0% | |
| ACACTCCCTAGGATCAGCAA+TGG | - | chr4_4:80591195-80591214 | Msa0707360:intron | 50.0% | |
| CAACGCCATTGCTGATCCTA+GGG | + | chr4_4:80591203-80591222 | None:intergenic | 50.0% | |
| TCAGCAATGGCGTTGCTTAC+CGG | - | chr4_4:80591208-80591227 | Msa0707360:intron | 50.0% | |
| GTTGCTTACCGGGAAAACCA+TGG | - | chr4_4:80591219-80591238 | Msa0707360:intron | 50.0% | |
| GGGAAAACCATGGCCAAGAA+TGG | - | chr4_4:80591229-80591248 | Msa0707360:intron | 50.0% | |
| ! | AAACACGGGATTCGATTCGC+TGG | - | chr4_4:80591328-80591347 | Msa0707360:intron | 50.0% |
| CAAATCCTTTGGCTGCTGCT+TGG | + | chr4_4:80591392-80591411 | None:intergenic | 50.0% | |
| CACGCAGACAAAGCGGTAAA+TGG | + | chr4_4:80591424-80591443 | None:intergenic | 50.0% | |
| CATTTACCGCTTTGTCTGCG+TGG | - | chr4_4:80591422-80591441 | Msa0707360:intron | 50.0% | |
| AAAATGGAGGACATTGGCGC+CGG | - | chr4_4:80591517-80591536 | Msa0707360:intron | 50.0% | |
| ! | CTCACTTGGTGGCCTATTGA+TGG | - | chr4_4:80591567-80591586 | Msa0707360:intron | 50.0% |
| ! | GCCTATTGATGGGTGCGTTT+GGG | - | chr4_4:80591578-80591597 | Msa0707360:intron | 50.0% |
| TCCCAAACGCACCCATCAAT+AGG | + | chr4_4:80591582-80591601 | None:intergenic | 50.0% | |
| ! | ATTGATGGGTGCGTTTGGGA+AGG | - | chr4_4:80591582-80591601 | Msa0707360:intron | 50.0% |
| GCTGAAGGAATGAGGTGCAA+TGG | + | chr4_4:80591616-80591635 | None:intergenic | 50.0% | |
| CTCATGGGATTCATCAGTGG+TGG | - | chr4_4:80591680-80591699 | Msa0707360:intron | 50.0% | |
| TTGTATTCGAGGCGCAAGTC+GGG | + | chr4_4:80591709-80591728 | None:intergenic | 50.0% | |
| CTTGTATTCGAGGCGCAAGT+CGG | + | chr4_4:80591710-80591729 | None:intergenic | 50.0% | |
| GGCAGCAAGAAAACCCCAGA+AGG | + | chr4_4:80589540-80589559 | None:intergenic | 55.0% | |
| ! | GGAGGGTGCATAGACTGTCA+TGG | - | chr4_4:80589987-80590006 | Msa0707360:CDS | 55.0% |
| !! | AACCCCACAAAACCGGCTTG+TGG | - | chr4_4:80590587-80590606 | Msa0707360:intron | 55.0% |
| !! | ACCCCACAAAACCGGCTTGT+GGG | - | chr4_4:80590588-80590607 | Msa0707360:intron | 55.0% |
| !! | ACCCCACAAGCCGGTTTTGT+GGG | + | chr4_4:80590593-80590612 | None:intergenic | 55.0% |
| ! | CATTCTAGAAAGGGACCGGC+AGG | - | chr4_4:80590829-80590848 | Msa0707360:intron | 55.0% |
| CGAAACACGGTAGCAACCGT+AGG | - | chr4_4:80591148-80591167 | Msa0707360:intron | 55.0% | |
| ! | TGGTTAGCTGGACACTCCCT+AGG | - | chr4_4:80591184-80591203 | Msa0707360:intron | 55.0% |
| GCAACGCCATTGCTGATCCT+AGG | + | chr4_4:80591204-80591223 | None:intergenic | 55.0% | |
| CAGCAATGGCGTTGCTTACC+GGG | - | chr4_4:80591209-80591228 | Msa0707360:intron | 55.0% | |
| GAAAGCCAAGCAGCAGCCAA+AGG | - | chr4_4:80591384-80591403 | Msa0707360:intron | 55.0% | |
| ! | GGCCTATTGATGGGTGCGTT+TGG | - | chr4_4:80591577-80591596 | Msa0707360:intron | 55.0% |
| !! | CCCCACAAGCCGGTTTTGTG+GGG | + | chr4_4:80590592-80590611 | None:intergenic | 60.0% |
| !! | CCCCACAAAACCGGCTTGTG+GGG | - | chr4_4:80590589-80590608 | Msa0707360:intron | 60.0% |
| !! | CACCCCACAAGCCGGTTTTG+TGG | + | chr4_4:80590594-80590613 | None:intergenic | 60.0% |
| !! | CAAAACCGGCTTGTGGGGTG+AGG | - | chr4_4:80590594-80590613 | Msa0707360:intron | 60.0% |
| GCAATCCTCACCCCACAAGC+CGG | + | chr4_4:80590602-80590621 | None:intergenic | 60.0% | |
| ! | GACCGGCAGGAAAAGCGTGA+AGG | - | chr4_4:80590842-80590861 | Msa0707360:intron | 60.0% |
| GCTGGCAGCGTGATAACAGC+TGG | - | chr4_4:80591346-80591365 | Msa0707360:intron | 60.0% | |
| ! | TTGGCGCCGGAGTGATCGAA+AGG | - | chr4_4:80591530-80591549 | Msa0707360:intron | 60.0% |
| CAGATGCTCTCGCGCCACCT+TGG | - | chr4_4:80590867-80590886 | Msa0707360:intron | 65.0% | |
| ATGCTCTCGCGCCACCTTGG+TGG | - | chr4_4:80590870-80590889 | Msa0707360:intron | 65.0% | |
| CGGGACCCACGCAGACAAAG+CGG | + | chr4_4:80591431-80591450 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 80588894 | 80592058 | 80588894 | ID=Msa0707360;Name=Msa0707360 |
| chr4_4 | mRNA | 80588894 | 80592058 | 80588894 | ID=Msa0707360-mRNA-1;Parent=Msa0707360;Name=Msa0707360-mRNA-1;_AED=0.15;_eAED=0.15;_QI=180|1|1|1|0.5|0.66|3|311|344 |
| chr4_4 | exon | 80588894 | 80590177 | 80588894 | ID=Msa0707360-mRNA-1:exon:26309;Parent=Msa0707360-mRNA-1 |
| chr4_4 | exon | 80590885 | 80590984 | 80590885 | ID=Msa0707360-mRNA-1:exon:26308;Parent=Msa0707360-mRNA-1 |
| chr4_4 | exon | 80591917 | 80592058 | 80591917 | ID=Msa0707360-mRNA-1:exon:26307;Parent=Msa0707360-mRNA-1 |
| chr4_4 | five_prime_UTR | 80591917 | 80592058 | 80591917 | ID=Msa0707360-mRNA-1:five_prime_utr;Parent=Msa0707360-mRNA-1 |
| chr4_4 | five_prime_UTR | 80590947 | 80590984 | 80590947 | ID=Msa0707360-mRNA-1:five_prime_utr;Parent=Msa0707360-mRNA-1 |
| chr4_4 | CDS | 80590885 | 80590946 | 80590885 | ID=Msa0707360-mRNA-1:cds;Parent=Msa0707360-mRNA-1 |
| chr4_4 | CDS | 80589205 | 80590177 | 80589205 | ID=Msa0707360-mRNA-1:cds;Parent=Msa0707360-mRNA-1 |
| chr4_4 | three_prime_UTR | 80588894 | 80589204 | 80588894 | ID=Msa0707360-mRNA-1:three_prime_utr;Parent=Msa0707360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
