Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765960 | G7JWJ7 | 95.149 | 268 | 10 | 2 | 1 | 268 | 1 | 265 | 0.0 | 516 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033220 | Msa0765960 | -0.807506 | 4.889036e-50 | -8.615850e-47 |
| Msa0044530 | Msa0765960 | 0.816053 | 6.743825e-52 | -8.615850e-47 |
| Msa0091240 | Msa0765960 | 0.807778 | 4.280728e-50 | -8.615850e-47 |
| Msa0610690 | Msa0765960 | -0.819488 | 1.131104e-52 | -8.615850e-47 |
| Msa0674480 | Msa0765960 | -0.805851 | 1.093367e-49 | -8.615850e-47 |
| Msa0703950 | Msa0765960 | -0.837248 | 5.814884e-57 | -8.615850e-47 |
| Msa0719270 | Msa0765960 | -0.800687 | 1.282104e-48 | -8.615850e-47 |
| Msa0726170 | Msa0765960 | 0.942976 | 2.760772e-102 | -8.615850e-47 |
| Msa0742370 | Msa0765960 | 0.821199 | 4.584875e-53 | -8.615850e-47 |
| Msa0758780 | Msa0765960 | 0.833823 | 4.272704e-56 | -8.615850e-47 |
| Msa0758810 | Msa0765960 | 0.844087 | 9.394046e-59 | -8.615850e-47 |
| Msa0765960 | Msa0779450 | 0.800050 | 1.728641e-48 | -8.615850e-47 |
| Msa0765960 | Msa0795750 | -0.826378 | 2.804220e-54 | -8.615850e-47 |
| Msa0765960 | Msa0823480 | 0.801923 | 7.161344e-49 | -8.615850e-47 |
| Msa0765960 | Msa0838620 | 0.800892 | 1.164204e-48 | -8.615850e-47 |
| Msa0765960 | Msa0840520 | -0.810567 | 1.081071e-50 | -8.615850e-47 |
| Msa0765960 | Msa0851850 | -0.826009 | 3.432325e-54 | -8.615850e-47 |
| Msa0765960 | Msa0862480 | 0.814526 | 1.473038e-51 | -8.615850e-47 |
| Msa0765960 | Msa1044250 | -0.825005 | 5.932828e-54 | -8.615850e-47 |
| Msa0765960 | Msa1082410 | -0.834379 | 3.102003e-56 | -8.615850e-47 |
| Msa0765960 | Msa1106590 | -0.809072 | 2.266844e-50 | -8.615850e-47 |
| Msa0765960 | Msa1145300 | -0.805933 | 1.050635e-49 | -8.615850e-47 |
| Msa0765960 | Msa1165460 | -0.805869 | 1.083679e-49 | -8.615850e-47 |
| Msa0765960 | Msa1391500 | -0.803263 | 3.788819e-49 | -8.615850e-47 |
| Msa0765960 | Msa1422860 | -0.803423 | 3.510864e-49 | -8.615850e-47 |
| Msa0765960 | Msa1428230 | 0.802570 | 5.269275e-49 | -8.615850e-47 |
| Msa0765960 | Msa1436620 | -0.808606 | 2.851928e-50 | -8.615850e-47 |
| Msa0765960 | Msa1454500 | -0.802930 | 4.440404e-49 | -8.615850e-47 |
| Msa0765960 | Msa1457890 | -0.800025 | 1.749140e-48 | -8.615850e-47 |
| Msa0140770 | Msa0765960 | 0.810726 | 9.986260e-51 | -8.615850e-47 |
| Msa0142430 | Msa0765960 | -0.800363 | 1.493144e-48 | -8.615850e-47 |
| Msa0183310 | Msa0765960 | 0.809663 | 1.692661e-50 | -8.615850e-47 |
| Msa0184500 | Msa0765960 | -0.805599 | 1.235101e-49 | -8.615850e-47 |
| Msa0412790 | Msa0765960 | -0.800684 | 1.284202e-48 | -8.615850e-47 |
| Msa0438680 | Msa0765960 | 0.814617 | 1.406516e-51 | -8.615850e-47 |
| Msa0479760 | Msa0765960 | 0.813750 | 2.185085e-51 | -8.615850e-47 |
| Msa0288620 | Msa0765960 | -0.804928 | 1.707052e-49 | -8.615850e-47 |
| Msa0330520 | Msa0765960 | -0.810733 | 9.954993e-51 | -8.615850e-47 |
| Msa0354970 | Msa0765960 | 0.809532 | 1.805963e-50 | -8.615850e-47 |
| Msa0355080 | Msa0765960 | 0.814412 | 1.560762e-51 | -8.615850e-47 |
| Msa0567610 | Msa0765960 | -0.803894 | 2.802984e-49 | -8.615850e-47 |
| Msa0579080 | Msa0765960 | -0.804256 | 2.356712e-49 | -8.615850e-47 |
| Msa0579160 | Msa0765960 | -0.808735 | 2.676135e-50 | -8.615850e-47 |
| Msa0579220 | Msa0765960 | -0.815628 | 8.386249e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765960 | MtrunA17_Chr5g0418031 | 95.149 | 268 | 10 | 2 | 1 | 268 | 1 | 265 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0765960 | AT1G13990.1 | 59.862 | 289 | 79 | 5 | 1 | 266 | 1 | 275 | 1.17e-99 | 293 |
| Msa0765960 | AT1G13990.2 | 54.259 | 317 | 80 | 6 | 1 | 266 | 1 | 303 | 1.64e-92 | 275 |
| Msa0765960 | AT1G13990.3 | 49.062 | 320 | 95 | 9 | 1 | 266 | 1 | 306 | 5.36e-70 | 218 |
Find 99 sgRNAs with CRISPR-Local
Find 355 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGTTTGGAAATGGAAAT+TGG | 0.174634 | 5_2:-27373641 | None:intergenic |
| TTTGTTCCCTTTGGCTGTTT+TGG | 0.287692 | 5_2:-27378316 | None:intergenic |
| AAGAGAAGTTAGTTTGGAAA+TGG | 0.319072 | 5_2:-27373648 | None:intergenic |
| AAGAACTCATCCGAGTTTCC+AGG | 0.333604 | 5_2:-27373941 | None:intergenic |
| TGGAAGAAGAGAAGTTAGTT+TGG | 0.348657 | 5_2:-27373654 | None:intergenic |
| GAGCTCGAAGATTAAGCTTA+AGG | 0.349622 | 5_2:-27378197 | None:intergenic |
| GTGGCGACGGAAAGGGTTGG+TGG | 0.357740 | 5_2:-27373735 | None:intergenic |
| CCTTTCTCCTCCTCCTTGTT+CGG | 0.360594 | 5_2:-27373820 | None:intergenic |
| ATTTGAAGTGTCCTATAGAT+AGG | 0.360675 | 5_2:+27378460 | Msa0765960:three_prime_UTR |
| CTATAGATAGGGCGAGTTAT+AGG | 0.361731 | 5_2:+27378472 | Msa0765960:three_prime_UTR |
| GTCGTCGGCGGCGGCGGCAG+AGG | 0.365376 | 5_2:+27373857 | Msa0765960:CDS |
| TGCAACGTCGTCGGCGGCGG+CGG | 0.376584 | 5_2:+27373851 | Msa0765960:CDS |
| AATCACACCTTATATTTCTC+CGG | 0.387380 | 5_2:-27376531 | None:intergenic |
| TTAGTTTGGAAATGGAAATT+GGG | 0.394216 | 5_2:-27373640 | None:intergenic |
| TGAAAACCCGGAGAAATATA+AGG | 0.401206 | 5_2:+27376524 | Msa0765960:CDS |
| AGAGAGAGAGGCGGCGGGTG+TGG | 0.404308 | 5_2:-27373754 | None:intergenic |
| CTATAACTCGCCCTATCTAT+AGG | 0.421329 | 5_2:-27378471 | None:intergenic |
| TCAGATCATCTTGATCTTCA+AGG | 0.424973 | 5_2:-27378230 | None:intergenic |
| CTAATATCTTCTACTTGCAT+TGG | 0.426258 | 5_2:-27376724 | None:intergenic |
| CGACGGAAAGGGTTGGTGGG+AGG | 0.428198 | 5_2:-27373731 | None:intergenic |
| TTGATCTTTGCAAGAAAATG+AGG | 0.433526 | 5_2:+27378124 | Msa0765960:CDS |
| CGGCGGGTGTGGCGACGGAA+AGG | 0.455266 | 5_2:-27373743 | None:intergenic |
| TACCGATGAGGCGTCTATCT+CGG | 0.460916 | 5_2:-27378013 | None:intergenic |
| TCGTGCAACGTCGTCGGCGG+CGG | 0.462296 | 5_2:+27373848 | Msa0765960:CDS |
| GGCTTTGAAGTTTCTCTCCA+AGG | 0.462303 | 5_2:-27376460 | None:intergenic |
| TTAATCTTCGAGCTCGAAAA+CGG | 0.465903 | 5_2:+27378205 | Msa0765960:CDS |
| GACGGAAAGGGTTGGTGGGA+GGG | 0.471223 | 5_2:-27373730 | None:intergenic |
| GGCGGGTGTGGCGACGGAAA+GGG | 0.478572 | 5_2:-27373742 | None:intergenic |
| TTTGATTCTAGCAGCTATGA+TGG | 0.481586 | 5_2:+27374016 | Msa0765960:CDS |
| GGAGAAGAGAGAGAGGCGGC+GGG | 0.484370 | 5_2:-27373759 | None:intergenic |
| CAAGTAGAAGATATTAGAGA+TGG | 0.493706 | 5_2:+27376730 | Msa0765960:CDS |
| GGGAGAAGAGAGAGAGGCGG+CGG | 0.493916 | 5_2:-27373760 | None:intergenic |
| AGAGGCGGCGGGTGTGGCGA+CGG | 0.499779 | 5_2:-27373748 | None:intergenic |
| CAGTGGAAACGAGGAGGAGG+TGG | 0.500190 | 5_2:+27373889 | Msa0765960:CDS |
| ATCACTTCTTTCCCATCAGA+AGG | 0.507476 | 5_2:-27378268 | None:intergenic |
| GAGGTGTAGAGATGAGTCTC+GGG | 0.508797 | 5_2:-27373793 | None:intergenic |
| GAAATTCAACTCCCTTCTGA+TGG | 0.511169 | 5_2:+27378256 | Msa0765960:exon |
| GTCGGCGGCGGCGGCAGAGG+AGG | 0.511472 | 5_2:+27373860 | Msa0765960:CDS |
| AGCGAAGTTGAAAGAGAGCT+TGG | 0.516832 | 5_2:+27376622 | Msa0765960:intron |
| GCTTTGAAGTTTCTCTCCAA+GGG | 0.519722 | 5_2:-27376459 | None:intergenic |
| AAATCAGTCTAAACAAGCAA+GGG | 0.520422 | 5_2:+27376687 | Msa0765960:CDS |
| GTTGGTGGGAGGGAGAGCGA+TGG | 0.522907 | 5_2:-27373720 | None:intergenic |
| AGATATTAGAGATGGAGTGC+TGG | 0.526832 | 5_2:+27376738 | Msa0765960:CDS |
| CTCCTCCTTGTTCGGAAGTG+AGG | 0.531784 | 5_2:-27373812 | None:intergenic |
| CCGAACAAGGAGGAGGAGAA+AGG | 0.536819 | 5_2:+27373820 | Msa0765960:CDS |
| ATCACACCTTATATTTCTCC+GGG | 0.540391 | 5_2:-27376530 | None:intergenic |
| TGTGTATGTACTCACCCAAA+AGG | 0.546154 | 5_2:+27376483 | Msa0765960:CDS |
| TGATCTTTGCAAGAAAATGA+GGG | 0.547590 | 5_2:+27378125 | Msa0765960:CDS |
| TTTGAAGTGTCCTATAGATA+GGG | 0.548497 | 5_2:+27378461 | Msa0765960:three_prime_UTR |
| GAAGTATCGTGCAACGTCGT+CGG | 0.549545 | 5_2:+27373842 | Msa0765960:CDS |
| TTGCAGTTCTATTCCGCAGA+GGG | 0.551682 | 5_2:+27378151 | Msa0765960:CDS |
| CTACACCTCACTTCCGAACA+AGG | 0.552595 | 5_2:+27373807 | Msa0765960:CDS |
| GATGGCGGGAGAAGAGAGAG+AGG | 0.554072 | 5_2:-27373766 | None:intergenic |
| ATCATAGCTGCTAGAATCAA+AGG | 0.555592 | 5_2:-27374014 | None:intergenic |
| GTGGGAGGGAGAGCGATGGA+AGG | 0.556169 | 5_2:-27373716 | None:intergenic |
| TGACAGTGGAAACGAGGAGG+AGG | 0.559489 | 5_2:+27373886 | Msa0765960:CDS |
| AAAATCAGTCTAAACAAGCA+AGG | 0.561023 | 5_2:+27376686 | Msa0765960:CDS |
| GAGAAAGCGCTTCACATGGA+TGG | 0.561227 | 5_2:+27373911 | Msa0765960:CDS |
| CAGATCATCTTGATCTTCAA+GGG | 0.562330 | 5_2:-27378229 | None:intergenic |
| GGTATTTGAAGATGAAAATG+AGG | 0.563344 | 5_2:+27377945 | Msa0765960:intron |
| TCCACACTTCACATCAACCA+TGG | 0.563558 | 5_2:+27373673 | Msa0765960:exon |
| TGAGGTGTAGAGATGAGTCT+CGG | 0.563676 | 5_2:-27373794 | None:intergenic |
| CGATGGAAGGTGAAACTGAA+GGG | 0.566266 | 5_2:-27373703 | None:intergenic |
| TGGCGACGGAAAGGGTTGGT+GGG | 0.569624 | 5_2:-27373734 | None:intergenic |
| TGCCGAGATAGACGCCTCAT+CGG | 0.575782 | 5_2:+27378011 | Msa0765960:CDS |
| CCGACGCATGTCATAAGCAC+GGG | 0.578794 | 5_2:-27373978 | None:intergenic |
| AACTGAAGGGAGAGAATCCA+TGG | 0.580578 | 5_2:-27373690 | None:intergenic |
| AAATTCAACTCCCTTCTGAT+GGG | 0.581246 | 5_2:+27378257 | Msa0765960:exon |
| CTTGCTGCAAGGAGGTTGTG+AGG | 0.590015 | 5_2:+27377984 | Msa0765960:CDS |
| AGTCTAAACAAGCAAGGGGA+GGG | 0.591602 | 5_2:+27376692 | Msa0765960:CDS |
| CTCACTTCCGAACAAGGAGG+AGG | 0.592127 | 5_2:+27373813 | Msa0765960:CDS |
| TTGCTGCAAGGAGGTTGTGA+GGG | 0.596232 | 5_2:+27377985 | Msa0765960:CDS |
| TTTGGTTATTTGTACCGATG+AGG | 0.600537 | 5_2:-27378025 | None:intergenic |
| TAACACCCAAAACAGCCAAA+GGG | 0.603277 | 5_2:+27378310 | Msa0765960:three_prime_UTR |
| CAGTCTAAACAAGCAAGGGG+AGG | 0.606675 | 5_2:+27376691 | Msa0765960:CDS |
| AGGAGATGACAGTGGAAACG+AGG | 0.607798 | 5_2:+27373880 | Msa0765960:CDS |
| AATTGTGCACGATGAAAACC+CGG | 0.610498 | 5_2:+27376512 | Msa0765960:CDS |
| GGTGGAGAAAGCGCTTCACA+TGG | 0.611542 | 5_2:+27373907 | Msa0765960:CDS |
| GTATCGTGCAACGTCGTCGG+CGG | 0.612057 | 5_2:+27373845 | Msa0765960:CDS |
| CAGTTCTATTCCGCAGAGGG+AGG | 0.613903 | 5_2:+27378154 | Msa0765960:CDS |
| GTAACACCCAAAACAGCCAA+AGG | 0.614205 | 5_2:+27378309 | Msa0765960:three_prime_UTR |
| GGTGTGGCGACGGAAAGGGT+TGG | 0.615753 | 5_2:-27373738 | None:intergenic |
| GGCGGGAGAAGAGAGAGAGG+CGG | 0.617937 | 5_2:-27373763 | None:intergenic |
| AAGTATTGTGACTTGCTGCA+AGG | 0.620712 | 5_2:+27377973 | Msa0765960:CDS |
| CCCGTGCTTATGACATGCGT+CGG | 0.623625 | 5_2:+27373978 | Msa0765960:CDS |
| TCACTTCTTTCCCATCAGAA+GGG | 0.624890 | 5_2:-27378267 | None:intergenic |
| TCCATGGTTGATGTGAAGTG+TGG | 0.626748 | 5_2:-27373674 | None:intergenic |
| TCCGACGCATGTCATAAGCA+CGG | 0.634960 | 5_2:-27373979 | None:intergenic |
| CTTGCAGTTCTATTCCGCAG+AGG | 0.639139 | 5_2:+27378150 | Msa0765960:CDS |
| GCGATGGAAGGTGAAACTGA+AGG | 0.640575 | 5_2:-27373704 | None:intergenic |
| ACGCATGTCATAAGCACGGG+AGG | 0.659438 | 5_2:-27373975 | None:intergenic |
| AGATGACAGTGGAAACGAGG+AGG | 0.659545 | 5_2:+27373883 | Msa0765960:CDS |
| CAGGAGGTGTCCTCCCTCTG+CGG | 0.666929 | 5_2:-27378164 | None:intergenic |
| AATCAGTCTAAACAAGCAAG+GGG | 0.668776 | 5_2:+27376688 | Msa0765960:CDS |
| AGGTGTAGAGATGAGTCTCG+GGG | 0.671225 | 5_2:-27373792 | None:intergenic |
| CACCTCACTTCCGAACAAGG+AGG | 0.734423 | 5_2:+27373810 | Msa0765960:CDS |
| GGCAGAGGAGGAGATGACAG+TGG | 0.737489 | 5_2:+27373872 | Msa0765960:CDS |
| TATTGTGACTTGCTGCAAGG+AGG | 0.750982 | 5_2:+27377976 | Msa0765960:CDS |
| GGTGTAGAGATGAGTCTCGG+GGG | 0.766311 | 5_2:-27373791 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATATAAATATAAATTT+AGG | - | chr5_2:27374539-27374558 | None:intergenic | 0.0% |
| !!! | AATTTAATTTTTTGTTTTCA+TGG | + | chr5_2:27374080-27374099 | Msa0765960:intron | 10.0% |
| !!! | TTAAGCTATTTTTATAAAAA+AGG | - | chr5_2:27374342-27374361 | None:intergenic | 10.0% |
| !! | ATTATATTATGTTTAGATAT+TGG | + | chr5_2:27376195-27376214 | Msa0765960:intron | 10.0% |
| !!! | ATAAATTTAGGATGAAATTT+AGG | - | chr5_2:27374527-27374546 | None:intergenic | 15.0% |
| !! | AAAATAATAATGAAAGGAAT+TGG | + | chr5_2:27374676-27374695 | Msa0765960:intron | 15.0% |
| !! | ATATCGTTTATGAATAAATT+CGG | + | chr5_2:27375145-27375164 | Msa0765960:intron | 15.0% |
| !!! | TGTTTTTTTCTATCAATATT+TGG | + | chr5_2:27376565-27376584 | Msa0765960:intron | 15.0% |
| !!! | ATTTAAAGTCAAATTGCTTA+TGG | + | chr5_2:27374132-27374151 | Msa0765960:intron | 20.0% |
| !! | TATTTGGATTGAATTATTTG+AGG | + | chr5_2:27374163-27374182 | Msa0765960:intron | 20.0% |
| !! | AATAAGCTGAAATCTATTAA+TGG | - | chr5_2:27374247-27374266 | None:intergenic | 20.0% |
| !!! | CTTATTTACATAAGTTTTCT+AGG | + | chr5_2:27374261-27374280 | Msa0765960:intron | 20.0% |
| !! | AGAGTGAAAATAATAATGAA+AGG | + | chr5_2:27374670-27374689 | Msa0765960:intron | 20.0% |
| !! | AGTAACTATATACTACAAAT+AGG | - | chr5_2:27374770-27374789 | None:intergenic | 20.0% |
| !! | GAATTTATTCATAAACGATA+TGG | - | chr5_2:27375146-27375165 | None:intergenic | 20.0% |
| !!! | GATTGTATTCTGTTTTATTT+TGG | + | chr5_2:27375709-27375728 | Msa0765960:intron | 20.0% |
| !! | AGCAATAAATTAAACTAAGA+TGG | - | chr5_2:27375792-27375811 | None:intergenic | 20.0% |
| !!! | TATTATTTACCTGTTGATTT+AGG | + | chr5_2:27376043-27376062 | Msa0765960:intron | 20.0% |
| !!! | ATTATTTACCTGTTGATTTA+GGG | + | chr5_2:27376044-27376063 | Msa0765960:intron | 20.0% |
| !!! | TTGTTACTTGTAATAATTGA+AGG | + | chr5_2:27376345-27376364 | Msa0765960:intron | 20.0% |
| !! | AAAAACAATAAACTGACAAA+AGG | - | chr5_2:27376375-27376394 | None:intergenic | 20.0% |
| !! | GATAGAAAAAAACAGAAAAA+AGG | - | chr5_2:27376559-27376578 | None:intergenic | 20.0% |
| !! | ACAAAATTATCAATAAACGT+TGG | + | chr5_2:27376791-27376810 | Msa0765960:intron | 20.0% |
| !! | ATTTCACATTACAAAATGTT+TGG | - | chr5_2:27376831-27376850 | None:intergenic | 20.0% |
| !!! | AATATATCAGAAAGTATCAA+AGG | + | chr5_2:27376848-27376867 | Msa0765960:intron | 20.0% |
| !! | TTAGTTTGGAAATGGAAATT+GGG | - | chr5_2:27373643-27373662 | None:intergenic | 25.0% |
| ! | GATCTTCATGATTTAGATTA+AGG | + | chr5_2:27374104-27374123 | Msa0765960:intron | 25.0% |
| ! | AGGATAAAATTGAATCAAAC+TGG | - | chr5_2:27374322-27374341 | None:intergenic | 25.0% |
| !! | AAATTTAGGTTAAGTTGCTT+GGG | - | chr5_2:27374513-27374532 | None:intergenic | 25.0% |
| ! | ATATCCTTGGTTTACAAAAA+AGG | + | chr5_2:27374914-27374933 | Msa0765960:intron | 25.0% |
| ! | TTTGGAGATTATTGTTAGAA+AGG | - | chr5_2:27374988-27375007 | None:intergenic | 25.0% |
| ! | TTGTAAAACTGAGTTAATTG+AGG | + | chr5_2:27375057-27375076 | Msa0765960:intron | 25.0% |
| ! | ATGTTTCAAAATTCAAACTC+AGG | + | chr5_2:27375101-27375120 | Msa0765960:intron | 25.0% |
| !! | TTTAAAATTACCAAGTAGTG+AGG | - | chr5_2:27375592-27375611 | None:intergenic | 25.0% |
| ! | CATAATAAGATCAAATTCGA+TGG | - | chr5_2:27375636-27375655 | None:intergenic | 25.0% |
| !!! | TATTCTGTTTTATTTTGGCT+GGG | + | chr5_2:27375714-27375733 | Msa0765960:intron | 25.0% |
| ! | ATGATAACAACCAAGTAATA+TGG | - | chr5_2:27376014-27376033 | None:intergenic | 25.0% |
| !! | CTATCAATATTTGGAATCTT+CGG | + | chr5_2:27376574-27376593 | Msa0765960:intron | 25.0% |
| ! | ATTATGTTCAAACACAATAG+AGG | - | chr5_2:27376887-27376906 | None:intergenic | 25.0% |
| ! | CTATTGTGTTTGAACATAAT+TGG | + | chr5_2:27376887-27376906 | Msa0765960:intron | 25.0% |
| ! | TAATTGGAATTTGATTGCTT+TGG | + | chr5_2:27376903-27376922 | Msa0765960:intron | 25.0% |
| ! | TATACTAAGGAAAACTAATC+GGG | - | chr5_2:27376962-27376981 | None:intergenic | 25.0% |
| ! | GTATACTAAGGAAAACTAAT+CGG | - | chr5_2:27376963-27376982 | None:intergenic | 25.0% |
| ! | TTACACGGTTTAAATATCTT+GGG | + | chr5_2:27377118-27377137 | Msa0765960:intron | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | chr5_2:27377508-27377527 | Msa0765960:intron | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | + | chr5_2:27377651-27377670 | Msa0765960:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | chr5_2:27377691-27377710 | None:intergenic | 25.0% |
| ! | ATTTAACAATTTGACAACGT+TGG | + | chr5_2:27377918-27377937 | Msa0765960:intron | 25.0% |
| !! | AAGATTAAGCTTAAGGTTTT+CGG | - | chr5_2:27378193-27378212 | None:intergenic | 25.0% |
| ! | GTTAGTTTGGAAATGGAAAT+TGG | - | chr5_2:27373644-27373663 | None:intergenic | 30.0% |
| ! | AAGAGAAGTTAGTTTGGAAA+TGG | - | chr5_2:27373651-27373670 | None:intergenic | 30.0% |
| AAGTCAAATTGCTTATGGTA+AGG | + | chr5_2:27374137-27374156 | Msa0765960:intron | 30.0% | |
| AGTCAAATTGCTTATGGTAA+GGG | + | chr5_2:27374138-27374157 | Msa0765960:intron | 30.0% | |
| ! | ACTATTTGCAACTGTTTTCA+GGG | - | chr5_2:27374439-27374458 | None:intergenic | 30.0% |
| ! | AACTATTTGCAACTGTTTTC+AGG | - | chr5_2:27374440-27374459 | None:intergenic | 30.0% |
| TGAAAACAGTTGCAAATAGT+TGG | + | chr5_2:27374439-27374458 | Msa0765960:intron | 30.0% | |
| ! | GAAATTTAGGTTAAGTTGCT+TGG | - | chr5_2:27374514-27374533 | None:intergenic | 30.0% |
| ACCATCATACTCATTATTGT+TGG | + | chr5_2:27374579-27374598 | Msa0765960:intron | 30.0% | |
| ACCAACAATAATGAGTATGA+TGG | - | chr5_2:27374583-27374602 | None:intergenic | 30.0% | |
| ! | ATAGGATTTTTCGTTGTAGA+GGG | - | chr5_2:27374752-27374771 | None:intergenic | 30.0% |
| ! | AATAGGATTTTTCGTTGTAG+AGG | - | chr5_2:27374753-27374772 | None:intergenic | 30.0% |
| TGTAGTATATAGTTACTGAG+CGG | + | chr5_2:27374773-27374792 | Msa0765960:intron | 30.0% | |
| GGATAAGAAAACTACTTCAA+TGG | + | chr5_2:27374804-27374823 | Msa0765960:intron | 30.0% | |
| CAACTTCTATCAAAAGACAT+CGG | + | chr5_2:27374836-27374855 | Msa0765960:intron | 30.0% | |
| !!! | TACTCCTTTTTTGTAAACCA+AGG | - | chr5_2:27374921-27374940 | None:intergenic | 30.0% |
| TTACAAAAAAGGAGTAGAAC+AGG | + | chr5_2:27374925-27374944 | Msa0765960:intron | 30.0% | |
| TTGAGCGAGTCTAAATATAT+TGG | + | chr5_2:27375192-27375211 | Msa0765960:intron | 30.0% | |
| !!! | CTGTCATTTTATACATGTCT+AGG | - | chr5_2:27375226-27375245 | None:intergenic | 30.0% |
| AGACATGTATAAAATGACAG+CGG | + | chr5_2:27375226-27375245 | Msa0765960:intron | 30.0% | |
| TATGCAAATGTATGCAAATG+TGG | - | chr5_2:27375345-27375364 | None:intergenic | 30.0% | |
| TAACTCTCAAATCACATGAT+AGG | - | chr5_2:27375685-27375704 | None:intergenic | 30.0% | |
| !!! | GTATTCTGTTTTATTTTGGC+TGG | + | chr5_2:27375713-27375732 | Msa0765960:intron | 30.0% |
| GAGTATCTTAGTTTATCTCT+AGG | + | chr5_2:27375936-27375955 | Msa0765960:intron | 30.0% | |
| GTAATATGGCAACTAATTCT+AGG | - | chr5_2:27376000-27376019 | None:intergenic | 30.0% | |
| GAATTAGTTGCCATATTACT+TGG | + | chr5_2:27376001-27376020 | Msa0765960:intron | 30.0% | |
| AACACTAGACCTTAATTACA+GGG | - | chr5_2:27376085-27376104 | None:intergenic | 30.0% | |
| AAACACTAGACCTTAATTAC+AGG | - | chr5_2:27376086-27376105 | None:intergenic | 30.0% | |
| ATAATACTGTTGAAGTTGTG+AGG | - | chr5_2:27376180-27376199 | None:intergenic | 30.0% | |
| ! | TGTCATCTAAAACTGATGAA+AGG | - | chr5_2:27376438-27376457 | None:intergenic | 30.0% |
| AATCACACCTTATATTTCTC+CGG | - | chr5_2:27376534-27376553 | None:intergenic | 30.0% | |
| !! | TGCTTCCTTTTGAAAACAAT+AGG | - | chr5_2:27376648-27376667 | None:intergenic | 30.0% |
| AAAATCAGTCTAAACAAGCA+AGG | + | chr5_2:27376686-27376705 | Msa0765960:CDS | 30.0% | |
| AAATCAGTCTAAACAAGCAA+GGG | + | chr5_2:27376687-27376706 | Msa0765960:CDS | 30.0% | |
| CTAATATCTTCTACTTGCAT+TGG | - | chr5_2:27376727-27376746 | None:intergenic | 30.0% | |
| CAAGTAGAAGATATTAGAGA+TGG | + | chr5_2:27376730-27376749 | Msa0765960:CDS | 30.0% | |
| ATACTAAGGAAAACTAATCG+GGG | - | chr5_2:27376961-27376980 | None:intergenic | 30.0% | |
| !! | TTAGTTTTCCTTAGTATACC+CGG | + | chr5_2:27376964-27376983 | Msa0765960:intron | 30.0% |
| ATATTTAAACCGTGTAACCT+GGG | - | chr5_2:27377115-27377134 | None:intergenic | 30.0% | |
| GTTACACGGTTTAAATATCT+TGG | + | chr5_2:27377117-27377136 | Msa0765960:intron | 30.0% | |
| TAAATCATCGTATTCAAGCT+GGG | + | chr5_2:27377178-27377197 | Msa0765960:intron | 30.0% | |
| ! | TCTACCAACTTTTCTACTAT+AGG | - | chr5_2:27377504-27377523 | None:intergenic | 30.0% |
| TTGATCTACTCTTCTTACAA+CGG | - | chr5_2:27377575-27377594 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | + | chr5_2:27377576-27377595 | Msa0765960:intron | 30.0% | |
| ! | TTTTCTAATGGTTTCTCGAA+TGG | - | chr5_2:27377644-27377663 | None:intergenic | 30.0% |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | chr5_2:27377656-27377675 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr5_2:27377695-27377714 | Msa0765960:intron | 30.0% |
| AACTTACAGTTTACAGTAGT+AGG | - | chr5_2:27377791-27377810 | None:intergenic | 30.0% | |
| ! | GTAAACTGTAAGTTTGTTCA+TGG | + | chr5_2:27377797-27377816 | Msa0765960:intron | 30.0% |
| ! | GTTTCATTTTACCAAGTTGT+GGG | - | chr5_2:27377833-27377852 | None:intergenic | 30.0% |
| ! | TGTTTCATTTTACCAAGTTG+TGG | - | chr5_2:27377834-27377853 | None:intergenic | 30.0% |
| GGTATTTGAAGATGAAAATG+AGG | + | chr5_2:27377945-27377964 | Msa0765960:intron | 30.0% | |
| GGAGGCAAATTATAATAGTT+TGG | - | chr5_2:27378046-27378065 | None:intergenic | 30.0% | |
| ! | TGTTTTCAAACAACAGAGAT+TGG | - | chr5_2:27378067-27378086 | None:intergenic | 30.0% |
| TTGATCTTTGCAAGAAAATG+AGG | + | chr5_2:27378124-27378143 | Msa0765960:CDS | 30.0% | |
| TGATCTTTGCAAGAAAATGA+GGG | + | chr5_2:27378125-27378144 | Msa0765960:CDS | 30.0% | |
| ! | AGATTAAGCTTAAGGTTTTC+GGG | - | chr5_2:27378192-27378211 | None:intergenic | 30.0% |
| ! | ATTTGAAGTGTCCTATAGAT+AGG | + | chr5_2:27378460-27378479 | Msa0765960:three_prime_UTR | 30.0% |
| ! | TTTGAAGTGTCCTATAGATA+GGG | + | chr5_2:27378461-27378480 | Msa0765960:three_prime_UTR | 30.0% |
| TGGAAGAAGAGAAGTTAGTT+TGG | - | chr5_2:27373657-27373676 | None:intergenic | 35.0% | |
| TGGAAAAATTCCTGGAAACT+CGG | + | chr5_2:27373931-27373950 | Msa0765960:CDS | 35.0% | |
| ATCATAGCTGCTAGAATCAA+AGG | - | chr5_2:27374017-27374036 | None:intergenic | 35.0% | |
| TTTGATTCTAGCAGCTATGA+TGG | + | chr5_2:27374016-27374035 | Msa0765960:CDS | 35.0% | |
| ! | GCTTATGGTAAGGGTATATT+TGG | + | chr5_2:27374147-27374166 | Msa0765960:intron | 35.0% |
| CACTCTTGTACATCCAAATA+GGG | + | chr5_2:27374369-27374388 | Msa0765960:intron | 35.0% | |
| TCTAGTGAGAAATCCCTATT+TGG | - | chr5_2:27374385-27374404 | None:intergenic | 35.0% | |
| ! | CTATTTGCAACTGTTTTCAG+GGG | - | chr5_2:27374438-27374457 | None:intergenic | 35.0% |
| AAACAGTTGCAAATAGTTGG+TGG | + | chr5_2:27374442-27374461 | Msa0765960:intron | 35.0% | |
| TCTTAAACAAACGCACAAAC+AGG | - | chr5_2:27374611-27374630 | None:intergenic | 35.0% | |
| TTTGTGCGTTTGTTTAAGAG+TGG | + | chr5_2:27374612-27374631 | Msa0765960:intron | 35.0% | |
| ATCATCAACTTAGCTAAGCT+CGG | + | chr5_2:27374716-27374735 | Msa0765960:intron | 35.0% | |
| ! | TAGGATTTTTCGTTGTAGAG+GGG | - | chr5_2:27374751-27374770 | None:intergenic | 35.0% |
| GAAAACTACTTCAATGGAAG+AGG | + | chr5_2:27374810-27374829 | Msa0765960:intron | 35.0% | |
| CTCTAGACTAATGATATCCT+TGG | + | chr5_2:27374901-27374920 | Msa0765960:intron | 35.0% | |
| ! | CAAACAAAGCAGAGTTGTTT+TGG | - | chr5_2:27375006-27375025 | None:intergenic | 35.0% |
| GACATGTATAAAATGACAGC+GGG | + | chr5_2:27375227-27375246 | Msa0765960:intron | 35.0% | |
| CGTTTATGCATAGAGCTATT+GGG | - | chr5_2:27375415-27375434 | None:intergenic | 35.0% | |
| TCGTTTATGCATAGAGCTAT+TGG | - | chr5_2:27375416-27375435 | None:intergenic | 35.0% | |
| AAATTACCAAGTAGTGAGGA+TGG | - | chr5_2:27375588-27375607 | None:intergenic | 35.0% | |
| GGACAAATTGACAAATCACA+AGG | - | chr5_2:27375615-27375634 | None:intergenic | 35.0% | |
| TCTTGTATAGAGAGTGAGTT+GGG | + | chr5_2:27375741-27375760 | Msa0765960:intron | 35.0% | |
| !! | TTACCTGTTGATTTAGGGTA+AGG | + | chr5_2:27376049-27376068 | Msa0765960:intron | 35.0% |
| !! | TACCTGTTGATTTAGGGTAA+GGG | + | chr5_2:27376050-27376069 | Msa0765960:intron | 35.0% |
| GTCTTGTATCCCTGTAATTA+AGG | + | chr5_2:27376073-27376092 | Msa0765960:intron | 35.0% | |
| AATCATACGAGTCGAATCTA+TGG | + | chr5_2:27376263-27376282 | Msa0765960:intron | 35.0% | |
| ACATATACAGATCTCCATTG+AGG | - | chr5_2:27376299-27376318 | None:intergenic | 35.0% | |
| !!! | GCACAATTGGTTTTCCTTTT+GGG | - | chr5_2:27376500-27376519 | None:intergenic | 35.0% |
| !!! | TGCACAATTGGTTTTCCTTT+TGG | - | chr5_2:27376501-27376520 | None:intergenic | 35.0% |
| TGAAAACCCGGAGAAATATA+AGG | + | chr5_2:27376524-27376543 | Msa0765960:CDS | 35.0% | |
| ATCACACCTTATATTTCTCC+GGG | - | chr5_2:27376533-27376552 | None:intergenic | 35.0% | |
| ! | CTTGGCCTATTGTTTTCAAA+AGG | + | chr5_2:27376640-27376659 | Msa0765960:CDS | 35.0% |
| ! | TGTTTTCAAAAGGAAGCAAC+CGG | + | chr5_2:27376650-27376669 | Msa0765960:CDS | 35.0% |
| AATCAGTCTAAACAAGCAAG+GGG | + | chr5_2:27376688-27376707 | Msa0765960:CDS | 35.0% | |
| ! | TAGTTTTCCTTAGTATACCC+GGG | + | chr5_2:27376965-27376984 | Msa0765960:intron | 35.0% |
| TGGAATGTAACTTCAGCAAA+AGG | + | chr5_2:27377043-27377062 | Msa0765960:intron | 35.0% | |
| TATTTAAACCGTGTAACCTG+GGG | - | chr5_2:27377114-27377133 | None:intergenic | 35.0% | |
| GATATTTAAACCGTGTAACC+TGG | - | chr5_2:27377116-27377135 | None:intergenic | 35.0% | |
| !! | TTCTCCGTCATTTTGTACTA+TGG | - | chr5_2:27377145-27377164 | None:intergenic | 35.0% |
| ! | ACAAAATGACGGAGAAATAG+AGG | + | chr5_2:27377149-27377168 | Msa0765960:intron | 35.0% |
| GTAAATCATCGTATTCAAGC+TGG | + | chr5_2:27377177-27377196 | Msa0765960:intron | 35.0% | |
| ! | AAAGTACCACTTAAGCTGAA+AGG | + | chr5_2:27377243-27377262 | Msa0765960:intron | 35.0% |
| AACTTTCCTTTCAGCTTAAG+TGG | - | chr5_2:27377252-27377271 | None:intergenic | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | + | chr5_2:27377497-27377516 | Msa0765960:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | + | chr5_2:27377517-27377536 | Msa0765960:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | chr5_2:27377522-27377541 | Msa0765960:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | chr5_2:27377579-27377598 | Msa0765960:intron | 35.0% | |
| ! | GTTTCTCGAATGGTTTTCTT+AGG | - | chr5_2:27377634-27377653 | None:intergenic | 35.0% |
| CAATAAACCGTGCAATATGT+TGG | - | chr5_2:27377870-27377889 | None:intergenic | 35.0% | |
| ! | TTTGGTTATTTGTACCGATG+AGG | - | chr5_2:27378028-27378047 | None:intergenic | 35.0% |
| TTTCAAACAACAGAGATTGG+AGG | - | chr5_2:27378064-27378083 | None:intergenic | 35.0% | |
| TTAATCTTCGAGCTCGAAAA+CGG | + | chr5_2:27378205-27378224 | Msa0765960:CDS | 35.0% | |
| CAGATCATCTTGATCTTCAA+GGG | - | chr5_2:27378232-27378251 | None:intergenic | 35.0% | |
| TCAGATCATCTTGATCTTCA+AGG | - | chr5_2:27378233-27378252 | None:intergenic | 35.0% | |
| AAATTCAACTCCCTTCTGAT+GGG | + | chr5_2:27378257-27378276 | Msa0765960:exon | 35.0% | |
| ! | ATACACGTTTTTGTTCCCTT+TGG | - | chr5_2:27378328-27378347 | None:intergenic | 35.0% |
| CACATGGATGGAAAAATTCC+TGG | + | chr5_2:27373923-27373942 | Msa0765960:CDS | 40.0% | |
| GCACTCTTGTACATCCAAAT+AGG | + | chr5_2:27374368-27374387 | Msa0765960:intron | 40.0% | |
| AAGCTAGTGAGATCCATTTG+AGG | - | chr5_2:27374864-27374883 | None:intergenic | 40.0% | |
| ! | TATCATTAGTCTAGAGCGAG+AGG | - | chr5_2:27374897-27374916 | None:intergenic | 40.0% |
| !!! | GTTTTTTCTCCTCTCTGTCA+TGG | + | chr5_2:27375034-27375053 | Msa0765960:intron | 40.0% |
| ! | GTTTTACAACCATGACAGAG+AGG | - | chr5_2:27375046-27375065 | None:intergenic | 40.0% |
| ! | AATCAAGTGTTGCAAAGGTG+AGG | - | chr5_2:27375322-27375341 | None:intergenic | 40.0% |
| ! | TGTGGAATCAAGTGTTGCAA+AGG | - | chr5_2:27375327-27375346 | None:intergenic | 40.0% |
| ATTAAAGATGCGCTCACGTT+GGG | - | chr5_2:27375374-27375393 | None:intergenic | 40.0% | |
| CACTACACACTTGCAACAAT+GGG | - | chr5_2:27375466-27375485 | None:intergenic | 40.0% | |
| TCACTACACACTTGCAACAA+TGG | - | chr5_2:27375467-27375486 | None:intergenic | 40.0% | |
| AAGTGTGTAGTGAACTGAAC+AGG | + | chr5_2:27375474-27375493 | Msa0765960:intron | 40.0% | |
| GTGAACTGAACAGGTTAATG+AGG | + | chr5_2:27375483-27375502 | Msa0765960:intron | 40.0% | |
| ACATGATAGGTTCTCAACTC+AGG | - | chr5_2:27375672-27375691 | None:intergenic | 40.0% | |
| GTCTTGTATAGAGAGTGAGT+TGG | + | chr5_2:27375740-27375759 | Msa0765960:intron | 40.0% | |
| !! | ACCTGTTGATTTAGGGTAAG+GGG | + | chr5_2:27376051-27376070 | Msa0765960:intron | 40.0% |
| ATGGAGATTTCACACCTCAA+TGG | + | chr5_2:27376282-27376301 | Msa0765960:intron | 40.0% | |
| !!! | CAGTTTTAGATGACAACCCT+TGG | + | chr5_2:27376443-27376462 | Msa0765960:intron | 40.0% |
| !! | GCTTTGAAGTTTCTCTCCAA+GGG | - | chr5_2:27376462-27376481 | None:intergenic | 40.0% |
| !! | TTTTGGGTGAGTACATACAC+AGG | - | chr5_2:27376484-27376503 | None:intergenic | 40.0% |
| TGTGTATGTACTCACCCAAA+AGG | + | chr5_2:27376483-27376502 | Msa0765960:CDS | 40.0% | |
| AATTGTGCACGATGAAAACC+CGG | + | chr5_2:27376512-27376531 | Msa0765960:CDS | 40.0% | |
| ! | GATTTTCTATTGCAGCTCTC+CGG | - | chr5_2:27376672-27376691 | None:intergenic | 40.0% |
| AGATATTAGAGATGGAGTGC+TGG | + | chr5_2:27376738-27376757 | Msa0765960:CDS | 40.0% | |
| TGCTTTGGTAAATGCTAAGC+AGG | + | chr5_2:27376918-27376937 | Msa0765960:intron | 40.0% | |
| TAGAAGCAAGACGGAGTATA+TGG | + | chr5_2:27377023-27377042 | Msa0765960:intron | 40.0% | |
| AACTTCAGCAAAAGGAGAAG+TGG | + | chr5_2:27377051-27377070 | Msa0765960:intron | 40.0% | |
| ACTTCAGCAAAAGGAGAAGT+GGG | + | chr5_2:27377052-27377071 | Msa0765960:intron | 40.0% | |
| ATATCATACCCCAGGTTACA+CGG | + | chr5_2:27377103-27377122 | Msa0765960:intron | 40.0% | |
| GGGTCCATAGTACAAAATGA+CGG | + | chr5_2:27377138-27377157 | Msa0765960:intron | 40.0% | |
| TGTTGTATGGTACGGAATGT+TGG | + | chr5_2:27377298-27377317 | Msa0765960:intron | 40.0% | |
| GTTGTATGGTACGGAATGTT+GGG | + | chr5_2:27377299-27377318 | Msa0765960:intron | 40.0% | |
| AACACGAGAGTAAAGTGTAG+CGG | + | chr5_2:27377334-27377353 | Msa0765960:intron | 40.0% | |
| GTGGTAAGACTAGACATGAT+AGG | + | chr5_2:27377381-27377400 | Msa0765960:intron | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | - | chr5_2:27377566-27377585 | None:intergenic | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | + | chr5_2:27377604-27377623 | Msa0765960:intron | 40.0% | |
| AGATTTAGAGGTCACTGAGT+TGG | + | chr5_2:27377663-27377682 | Msa0765960:intron | 40.0% | |
| ! | CACTGAGTTGGATCCAAATA+TGG | + | chr5_2:27377675-27377694 | Msa0765960:intron | 40.0% |
| TTACCAAGTTGTGGGTACTA+GGG | - | chr5_2:27377825-27377844 | None:intergenic | 40.0% | |
| TTTACCAAGTTGTGGGTACT+AGG | - | chr5_2:27377826-27377845 | None:intergenic | 40.0% | |
| TCATCGACCAACATATTGCA+CGG | + | chr5_2:27377860-27377879 | Msa0765960:intron | 40.0% | |
| !! | AAGTATTGTGACTTGCTGCA+AGG | + | chr5_2:27377973-27377992 | Msa0765960:CDS | 40.0% |
| GAGCTCGAAGATTAAGCTTA+AGG | - | chr5_2:27378200-27378219 | None:intergenic | 40.0% | |
| GAAATTCAACTCCCTTCTGA+TGG | + | chr5_2:27378256-27378275 | Msa0765960:exon | 40.0% | |
| TCACTTCTTTCCCATCAGAA+GGG | - | chr5_2:27378270-27378289 | None:intergenic | 40.0% | |
| ATCACTTCTTTCCCATCAGA+AGG | - | chr5_2:27378271-27378290 | None:intergenic | 40.0% | |
| TAACACCCAAAACAGCCAAA+GGG | + | chr5_2:27378310-27378329 | Msa0765960:three_prime_UTR | 40.0% | |
| !! | TTGTTCCCTTTGGCTGTTTT+GGG | - | chr5_2:27378318-27378337 | None:intergenic | 40.0% |
| ! | TTTGTTCCCTTTGGCTGTTT+TGG | - | chr5_2:27378319-27378338 | None:intergenic | 40.0% |
| CTATAACTCGCCCTATCTAT+AGG | - | chr5_2:27378474-27378493 | None:intergenic | 40.0% | |
| CTATAGATAGGGCGAGTTAT+AGG | + | chr5_2:27378472-27378491 | Msa0765960:three_prime_UTR | 40.0% | |
| TCCACACTTCACATCAACCA+TGG | + | chr5_2:27373673-27373692 | Msa0765960:exon | 45.0% | |
| ! | TCCATGGTTGATGTGAAGTG+TGG | - | chr5_2:27373677-27373696 | None:intergenic | 45.0% |
| AACTGAAGGGAGAGAATCCA+TGG | - | chr5_2:27373693-27373712 | None:intergenic | 45.0% | |
| CGATGGAAGGTGAAACTGAA+GGG | - | chr5_2:27373706-27373725 | None:intergenic | 45.0% | |
| TGAGGTGTAGAGATGAGTCT+CGG | - | chr5_2:27373797-27373816 | None:intergenic | 45.0% | |
| AAGAACTCATCCGAGTTTCC+AGG | - | chr5_2:27373944-27373963 | None:intergenic | 45.0% | |
| !! | AAAGACATCGGCTCCTCAAA+TGG | + | chr5_2:27374848-27374867 | Msa0765960:intron | 45.0% |
| GAACAGGCTGAAGCTAAAAG+TGG | + | chr5_2:27374941-27374960 | Msa0765960:intron | 45.0% | |
| ATTCGGCTAGACAGTTGAAC+AGG | + | chr5_2:27375162-27375181 | Msa0765960:intron | 45.0% | |
| ! | CCGTTCAGCTATTGCGTTTT+GGG | - | chr5_2:27375271-27375290 | None:intergenic | 45.0% |
| CCCAAAACGCAATAGCTGAA+CGG | + | chr5_2:27375268-27375287 | Msa0765960:intron | 45.0% | |
| ! | ACCGTTCAGCTATTGCGTTT+TGG | - | chr5_2:27375272-27375291 | None:intergenic | 45.0% |
| CATTAAAGATGCGCTCACGT+TGG | - | chr5_2:27375375-27375394 | None:intergenic | 45.0% | |
| ACGTGAGCGCATCTTTAATG+AGG | + | chr5_2:27375375-27375394 | Msa0765960:intron | 45.0% | |
| GCGCATCTTTAATGAGGTGA+AGG | + | chr5_2:27375381-27375400 | Msa0765960:intron | 45.0% | |
| CCTTAGAGCTAGACTCAACT+CGG | - | chr5_2:27375548-27375567 | None:intergenic | 45.0% | |
| !! | AGTTGAGTCTAGCTCTAAGG+CGG | + | chr5_2:27375548-27375567 | Msa0765960:intron | 45.0% |
| TACCAAGTAGTGAGGATGGA+GGG | - | chr5_2:27375584-27375603 | None:intergenic | 45.0% | |
| TTACCAAGTAGTGAGGATGG+AGG | - | chr5_2:27375585-27375604 | None:intergenic | 45.0% | |
| ! | TATAGAGAGTGAGTTGGGTC+AGG | + | chr5_2:27375746-27375765 | Msa0765960:intron | 45.0% |
| ACCCCTTACCCTAAATCAAC+AGG | - | chr5_2:27376055-27376074 | None:intergenic | 45.0% | |
| !! | GGCTTTGAAGTTTCTCTCCA+AGG | - | chr5_2:27376463-27376482 | None:intergenic | 45.0% |
| ! | GGGTTTTCATCGTGCACAAT+TGG | - | chr5_2:27376513-27376532 | None:intergenic | 45.0% |
| AGCGAAGTTGAAAGAGAGCT+TGG | + | chr5_2:27376622-27376641 | Msa0765960:intron | 45.0% | |
| AGTCTAAACAAGCAAGGGGA+GGG | + | chr5_2:27376692-27376711 | Msa0765960:CDS | 45.0% | |
| ! | TTTTCCTTAGTATACCCGGG+AGG | + | chr5_2:27376968-27376987 | Msa0765960:intron | 45.0% |
| ! | AGGCAAGCCTTAGAAGCATA+TGG | + | chr5_2:27376988-27377007 | Msa0765960:intron | 45.0% |
| GCGGAAACCATATGCTTCTA+AGG | - | chr5_2:27376998-27377017 | None:intergenic | 45.0% | |
| TCTACCTTGGAGGTGAAAGT+TGG | + | chr5_2:27377075-27377094 | Msa0765960:intron | 45.0% | |
| ATCTCCAACTTTCACCTCCA+AGG | - | chr5_2:27377082-27377101 | None:intergenic | 45.0% | |
| TGGAGATCATATCATACCCC+AGG | + | chr5_2:27377095-27377114 | Msa0765960:intron | 45.0% | |
| ATCATCGTATTCAAGCTGGG+TGG | + | chr5_2:27377181-27377200 | Msa0765960:intron | 45.0% | |
| TTCAAGCTGGGTGGTTGAAA+TGG | + | chr5_2:27377190-27377209 | Msa0765960:intron | 45.0% | |
| TTGAAATGGAGAAGAGCCTC+AGG | + | chr5_2:27377204-27377223 | Msa0765960:intron | 45.0% | |
| ACCGGCAATGTTGTATGGTA+CGG | + | chr5_2:27377290-27377309 | Msa0765960:intron | 45.0% | |
| TCCGTACCATACAACATTGC+CGG | - | chr5_2:27377294-27377313 | None:intergenic | 45.0% | |
| GCTACACTTTACTCTCGTGT+TGG | - | chr5_2:27377335-27377354 | None:intergenic | 45.0% | |
| ! | AGTAAAGTGTAGCGGAGATG+AGG | + | chr5_2:27377342-27377361 | Msa0765960:intron | 45.0% |
| CTCTCTCTCTCTCTCTCTAA+TGG | - | chr5_2:27377420-27377439 | None:intergenic | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | - | chr5_2:27377565-27377584 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | chr5_2:27377588-27377607 | Msa0765960:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | + | chr5_2:27377598-27377617 | Msa0765960:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5_2:27377744-27377763 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5_2:27377745-27377764 | None:intergenic | 45.0% |
| CAATTTGACAACGTTGGTGC+AGG | + | chr5_2:27377924-27377943 | Msa0765960:intron | 45.0% | |
| !! | TATTGTGACTTGCTGCAAGG+AGG | + | chr5_2:27377976-27377995 | Msa0765960:CDS | 45.0% |
| TTGCAGTTCTATTCCGCAGA+GGG | + | chr5_2:27378151-27378170 | Msa0765960:CDS | 45.0% | |
| !!! | TTAAGGTTTTCGGGTACAGG+AGG | - | chr5_2:27378183-27378202 | None:intergenic | 45.0% |
| !!! | AGCTTAAGGTTTTCGGGTAC+AGG | - | chr5_2:27378186-27378205 | None:intergenic | 45.0% |
| GTAACACCCAAAACAGCCAA+AGG | + | chr5_2:27378309-27378328 | Msa0765960:three_prime_UTR | 45.0% | |
| GCGATGGAAGGTGAAACTGA+AGG | - | chr5_2:27373707-27373726 | None:intergenic | 50.0% | |
| AGGTGTAGAGATGAGTCTCG+GGG | - | chr5_2:27373795-27373814 | None:intergenic | 50.0% | |
| GAGGTGTAGAGATGAGTCTC+GGG | - | chr5_2:27373796-27373815 | None:intergenic | 50.0% | |
| CTACACCTCACTTCCGAACA+AGG | + | chr5_2:27373807-27373826 | Msa0765960:CDS | 50.0% | |
| CCTTTCTCCTCCTCCTTGTT+CGG | - | chr5_2:27373823-27373842 | None:intergenic | 50.0% | |
| !! | GAAGTATCGTGCAACGTCGT+CGG | + | chr5_2:27373842-27373861 | Msa0765960:CDS | 50.0% |
| AGGAGATGACAGTGGAAACG+AGG | + | chr5_2:27373880-27373899 | Msa0765960:CDS | 50.0% | |
| AGATGACAGTGGAAACGAGG+AGG | + | chr5_2:27373883-27373902 | Msa0765960:CDS | 50.0% | |
| !! | GAGAAAGCGCTTCACATGGA+TGG | + | chr5_2:27373911-27373930 | Msa0765960:CDS | 50.0% |
| TCCGACGCATGTCATAAGCA+CGG | - | chr5_2:27373982-27374001 | None:intergenic | 50.0% | |
| AGTTACTGAGCGGCATCAAG+AGG | + | chr5_2:27374783-27374802 | Msa0765960:intron | 50.0% | |
| ! | GGCTTTAGCTCATCTGAGCA+GGG | - | chr5_2:27375517-27375536 | None:intergenic | 50.0% |
| ! | AGGCTTTAGCTCATCTGAGC+AGG | - | chr5_2:27375518-27375537 | None:intergenic | 50.0% |
| AGACTCAACTCGGTAGAGCT+AGG | - | chr5_2:27375538-27375557 | None:intergenic | 50.0% | |
| !! | CCGAGTTGAGTCTAGCTCTA+AGG | + | chr5_2:27375545-27375564 | Msa0765960:intron | 50.0% |
| !! | GTTGAGTCTAGCTCTAAGGC+GGG | + | chr5_2:27375549-27375568 | Msa0765960:intron | 50.0% |
| !! | TTGAGTCTAGCTCTAAGGCG+GGG | + | chr5_2:27375550-27375569 | Msa0765960:intron | 50.0% |
| CAGTCTAAACAAGCAAGGGG+AGG | + | chr5_2:27376691-27376710 | Msa0765960:CDS | 50.0% | |
| ACTCCGTCTTGCTTCTACTC+AGG | - | chr5_2:27377020-27377039 | None:intergenic | 50.0% | |
| AAGGAGAAGTGGGTCTACCT+TGG | + | chr5_2:27377062-27377081 | Msa0765960:intron | 50.0% | |
| CTTATCGCACAAAACGCCTG+AGG | - | chr5_2:27377223-27377242 | None:intergenic | 50.0% | |
| CTATCAGACAGCAGTCAGAC+CGG | + | chr5_2:27377272-27377291 | Msa0765960:intron | 50.0% | |
| GTCAGACCGGCAATGTTGTA+TGG | + | chr5_2:27377285-27377304 | Msa0765960:intron | 50.0% | |
| GTATGGTACGGAATGTTGGG+CGG | + | chr5_2:27377302-27377321 | Msa0765960:intron | 50.0% | |
| AGGATGTTGCGTTGGATGAG+TGG | + | chr5_2:27377362-27377381 | Msa0765960:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+TGG | + | chr5_2:27377422-27377441 | Msa0765960:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGT+GGG | + | chr5_2:27377471-27377490 | Msa0765960:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGTG+GGG | + | chr5_2:27377472-27377491 | Msa0765960:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr5_2:27377740-27377759 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr5_2:27377746-27377765 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr5_2:27377743-27377762 | Msa0765960:intron | 50.0% | |
| GTACCCTAGTACCCACAACT+TGG | + | chr5_2:27377819-27377838 | Msa0765960:intron | 50.0% | |
| TTGCTGCAAGGAGGTTGTGA+GGG | + | chr5_2:27377985-27378004 | Msa0765960:CDS | 50.0% | |
| ! | TACCGATGAGGCGTCTATCT+CGG | - | chr5_2:27378016-27378035 | None:intergenic | 50.0% |
| CTTGCAGTTCTATTCCGCAG+AGG | + | chr5_2:27378150-27378169 | Msa0765960:CDS | 50.0% | |
| GGTGTAGAGATGAGTCTCGG+GGG | - | chr5_2:27373794-27373813 | None:intergenic | 55.0% | |
| CACCTCACTTCCGAACAAGG+AGG | + | chr5_2:27373810-27373829 | Msa0765960:CDS | 55.0% | |
| CTCCTCCTTGTTCGGAAGTG+AGG | - | chr5_2:27373815-27373834 | None:intergenic | 55.0% | |
| CTCACTTCCGAACAAGGAGG+AGG | + | chr5_2:27373813-27373832 | Msa0765960:CDS | 55.0% | |
| CCGAACAAGGAGGAGGAGAA+AGG | + | chr5_2:27373820-27373839 | Msa0765960:CDS | 55.0% | |
| TGACAGTGGAAACGAGGAGG+AGG | + | chr5_2:27373886-27373905 | Msa0765960:CDS | 55.0% | |
| !! | GGTGGAGAAAGCGCTTCACA+TGG | + | chr5_2:27373907-27373926 | Msa0765960:CDS | 55.0% |
| ACGCATGTCATAAGCACGGG+AGG | - | chr5_2:27373978-27373997 | None:intergenic | 55.0% | |
| CCGACGCATGTCATAAGCAC+GGG | - | chr5_2:27373981-27374000 | None:intergenic | 55.0% | |
| CCCGTGCTTATGACATGCGT+CGG | + | chr5_2:27373978-27373997 | Msa0765960:CDS | 55.0% | |
| GTAGTGAGGATGGAGGGACT+GGG | - | chr5_2:27375578-27375597 | None:intergenic | 55.0% | |
| AGTAGTGAGGATGGAGGGAC+TGG | - | chr5_2:27375579-27375598 | None:intergenic | 55.0% | |
| GTCCCTCCATCCTCACTACT+TGG | + | chr5_2:27375579-27375598 | Msa0765960:intron | 55.0% | |
| GAGTTGGGTCAGGTCTACTC+TGG | + | chr5_2:27375756-27375775 | Msa0765960:intron | 55.0% | |
| CTTGCCTCCCGGGTATACTA+AGG | - | chr5_2:27376975-27376994 | None:intergenic | 55.0% | |
| !! | TGCTTCTAAGGCTTGCCTCC+CGG | - | chr5_2:27376986-27377005 | None:intergenic | 55.0% |
| CCGTCTTGCTTCTACTCAGG+CGG | - | chr5_2:27377017-27377036 | None:intergenic | 55.0% | |
| CCGCCTGAGTAGAAGCAAGA+CGG | + | chr5_2:27377014-27377033 | Msa0765960:intron | 55.0% | |
| GAGAAGTGGGTCTACCTTGG+AGG | + | chr5_2:27377065-27377084 | Msa0765960:intron | 55.0% | |
| CGGAGATGAGGATGTTGCGT+TGG | + | chr5_2:27377354-27377373 | Msa0765960:intron | 55.0% | |
| GAGAGAGAGAGAGAGAGTGG+GGG | + | chr5_2:27377473-27377492 | Msa0765960:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr5_2:27377732-27377751 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr5_2:27377731-27377750 | Msa0765960:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr5_2:27377732-27377751 | Msa0765960:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr5_2:27377738-27377757 | Msa0765960:intron | 55.0% | |
| CTTGCTGCAAGGAGGTTGTG+AGG | + | chr5_2:27377984-27378003 | Msa0765960:CDS | 55.0% | |
| TGCCGAGATAGACGCCTCAT+CGG | + | chr5_2:27378011-27378030 | Msa0765960:CDS | 55.0% | |
| CAGTTCTATTCCGCAGAGGG+AGG | + | chr5_2:27378154-27378173 | Msa0765960:CDS | 55.0% | |
| !! | GACGGAAAGGGTTGGTGGGA+GGG | - | chr5_2:27373733-27373752 | None:intergenic | 60.0% |
| ! | TGGCGACGGAAAGGGTTGGT+GGG | - | chr5_2:27373737-27373756 | None:intergenic | 60.0% |
| !! | GATGGCGGGAGAAGAGAGAG+AGG | - | chr5_2:27373769-27373788 | None:intergenic | 60.0% |
| AGATGAGTCTCGGGGGCAGA+TGG | - | chr5_2:27373787-27373806 | None:intergenic | 60.0% | |
| GTATCGTGCAACGTCGTCGG+CGG | + | chr5_2:27373845-27373864 | Msa0765960:CDS | 60.0% | |
| GGCAGAGGAGGAGATGACAG+TGG | + | chr5_2:27373872-27373891 | Msa0765960:CDS | 60.0% | |
| CAGTGGAAACGAGGAGGAGG+TGG | + | chr5_2:27373889-27373908 | Msa0765960:CDS | 60.0% | |
| !! | GCTTCTAAGGCTTGCCTCCC+GGG | - | chr5_2:27376985-27377004 | None:intergenic | 60.0% |
| GTGGGAGGGAGAGCGATGGA+AGG | - | chr5_2:27373719-27373738 | None:intergenic | 65.0% | |
| ! | GTTGGTGGGAGGGAGAGCGA+TGG | - | chr5_2:27373723-27373742 | None:intergenic | 65.0% |
| !! | CGACGGAAAGGGTTGGTGGG+AGG | - | chr5_2:27373734-27373753 | None:intergenic | 65.0% |
| GTGGCGACGGAAAGGGTTGG+TGG | - | chr5_2:27373738-27373757 | None:intergenic | 65.0% | |
| GGTGTGGCGACGGAAAGGGT+TGG | - | chr5_2:27373741-27373760 | None:intergenic | 65.0% | |
| GGAGAAGAGAGAGAGGCGGC+GGG | - | chr5_2:27373762-27373781 | None:intergenic | 65.0% | |
| GGGAGAAGAGAGAGAGGCGG+CGG | - | chr5_2:27373763-27373782 | None:intergenic | 65.0% | |
| GGCGGGAGAAGAGAGAGAGG+CGG | - | chr5_2:27373766-27373785 | None:intergenic | 65.0% | |
| TGAGTCTCGGGGGCAGATGG+CGG | - | chr5_2:27373784-27373803 | None:intergenic | 65.0% | |
| !! | CAGGAGGTGTCCTCCCTCTG+CGG | - | chr5_2:27378167-27378186 | None:intergenic | 65.0% |
| GGCGGGTGTGGCGACGGAAA+GGG | - | chr5_2:27373745-27373764 | None:intergenic | 70.0% | |
| AGAGAGAGAGGCGGCGGGTG+TGG | - | chr5_2:27373757-27373776 | None:intergenic | 70.0% | |
| GAGTCTCGGGGGCAGATGGC+GGG | - | chr5_2:27373783-27373802 | None:intergenic | 70.0% | |
| TCGTGCAACGTCGTCGGCGG+CGG | + | chr5_2:27373848-27373867 | Msa0765960:CDS | 70.0% | |
| CGGCGGGTGTGGCGACGGAA+AGG | - | chr5_2:27373746-27373765 | None:intergenic | 75.0% | |
| AGAGGCGGCGGGTGTGGCGA+CGG | - | chr5_2:27373751-27373770 | None:intergenic | 75.0% | |
| TGCAACGTCGTCGGCGGCGG+CGG | + | chr5_2:27373851-27373870 | Msa0765960:CDS | 75.0% | |
| ! | GTCGTCGGCGGCGGCGGCAG+AGG | + | chr5_2:27373857-27373876 | Msa0765960:CDS | 85.0% |
| ! | GTCGGCGGCGGCGGCAGAGG+AGG | + | chr5_2:27373860-27373879 | Msa0765960:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 27373626 | 27378499 | 27373626 | ID=Msa0765960;Name=Msa0765960 |
| chr5_2 | mRNA | 27373626 | 27378499 | 27373626 | ID=Msa0765960-mRNA-1;Parent=Msa0765960;Name=Msa0765960-mRNA-1;_AED=0.13;_eAED=0.13;_QI=66|1|1|1|1|1|5|242|268 |
| chr5_2 | exon | 27373626 | 27374037 | 27373626 | ID=Msa0765960-mRNA-1:exon:10692;Parent=Msa0765960-mRNA-1 |
| chr5_2 | exon | 27376446 | 27376545 | 27376446 | ID=Msa0765960-mRNA-1:exon:10693;Parent=Msa0765960-mRNA-1 |
| chr5_2 | exon | 27376624 | 27376759 | 27376624 | ID=Msa0765960-mRNA-1:exon:10694;Parent=Msa0765960-mRNA-1 |
| chr5_2 | exon | 27377946 | 27378032 | 27377946 | ID=Msa0765960-mRNA-1:exon:10695;Parent=Msa0765960-mRNA-1 |
| chr5_2 | exon | 27378120 | 27378499 | 27378120 | ID=Msa0765960-mRNA-1:exon:10696;Parent=Msa0765960-mRNA-1 |
| chr5_2 | five_prime_UTR | 27373626 | 27373691 | 27373626 | ID=Msa0765960-mRNA-1:five_prime_utr;Parent=Msa0765960-mRNA-1 |
| chr5_2 | CDS | 27373692 | 27374037 | 27373692 | ID=Msa0765960-mRNA-1:cds;Parent=Msa0765960-mRNA-1 |
| chr5_2 | CDS | 27376446 | 27376545 | 27376446 | ID=Msa0765960-mRNA-1:cds;Parent=Msa0765960-mRNA-1 |
| chr5_2 | CDS | 27376624 | 27376759 | 27376624 | ID=Msa0765960-mRNA-1:cds;Parent=Msa0765960-mRNA-1 |
| chr5_2 | CDS | 27377946 | 27378032 | 27377946 | ID=Msa0765960-mRNA-1:cds;Parent=Msa0765960-mRNA-1 |
| chr5_2 | CDS | 27378120 | 27378257 | 27378120 | ID=Msa0765960-mRNA-1:cds;Parent=Msa0765960-mRNA-1 |
| chr5_2 | three_prime_UTR | 27378258 | 27378499 | 27378258 | ID=Msa0765960-mRNA-1:three_prime_utr;Parent=Msa0765960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
