Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458370 | XP_013460699.1 | 97.125 | 313 | 4 | 3 | 1 | 308 | 1 | 313 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458370 | sp|Q9M2S3|AHL15_ARATH | 52.647 | 340 | 99 | 10 | 1 | 308 | 1 | 310 | 2.95e-79 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458370 | A0A072V017 | 97.125 | 313 | 4 | 3 | 1 | 308 | 1 | 313 | 0.0 | 596 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa1458370 | -0.803185 | 3.933828e-49 | -8.615850e-47 |
| Msa0025690 | Msa1458370 | -0.803539 | 3.322528e-49 | -8.615850e-47 |
| Msa0117300 | Msa1458370 | -0.806406 | 8.353686e-50 | -8.615850e-47 |
| Msa1384980 | Msa1458370 | -0.829340 | 5.437167e-55 | -8.615850e-47 |
| Msa1395580 | Msa1458370 | -0.800100 | 1.688851e-48 | -8.615850e-47 |
| Msa1402000 | Msa1458370 | 0.803614 | 3.204759e-49 | -8.615850e-47 |
| Msa1409060 | Msa1458370 | 0.801129 | 1.041441e-48 | -8.615850e-47 |
| Msa1432250 | Msa1458370 | -0.822103 | 2.833806e-53 | -8.615850e-47 |
| Msa1450850 | Msa1458370 | -0.812158 | 4.880747e-51 | -8.615850e-47 |
| Msa1458370 | Msa1459170 | -0.801449 | 8.955983e-49 | -8.615850e-47 |
| Msa1458370 | Msa1459630 | -0.818100 | 2.337875e-52 | -8.615850e-47 |
| Msa1458370 | Msa1460530 | -0.808321 | 3.279517e-50 | -8.615850e-47 |
| Msa0608940 | Msa1458370 | -0.807181 | 5.730058e-50 | -8.615850e-47 |
| Msa0649530 | Msa1458370 | -0.811651 | 6.291549e-51 | -8.615850e-47 |
| Msa0718920 | Msa1458370 | -0.808477 | 3.039011e-50 | -8.615850e-47 |
| Msa0774560 | Msa1458370 | -0.808011 | 3.819405e-50 | -8.615850e-47 |
| Msa1230190 | Msa1458370 | -0.818490 | 1.907873e-52 | -8.615850e-47 |
| Msa1272770 | Msa1458370 | -0.800858 | 1.182965e-48 | -8.615850e-47 |
| Msa1279310 | Msa1458370 | -0.803846 | 2.868760e-49 | -8.615850e-47 |
| Msa1279320 | Msa1458370 | -0.824514 | 7.746583e-54 | -8.615850e-47 |
| Msa1319230 | Msa1458370 | -0.808519 | 2.975660e-50 | -8.615850e-47 |
| Msa1328600 | Msa1458370 | -0.822558 | 2.221841e-53 | -8.615850e-47 |
| Msa0372990 | Msa1458370 | -0.812717 | 3.684303e-51 | -8.615850e-47 |
| Msa0375500 | Msa1458370 | 0.835940 | 1.252411e-56 | -8.615850e-47 |
| Msa0384220 | Msa1458370 | 0.807762 | 4.314165e-50 | -8.615850e-47 |
| Msa0408160 | Msa1458370 | -0.816300 | 5.936700e-52 | -8.615850e-47 |
| Msa0424300 | Msa1458370 | 0.812994 | 3.203412e-51 | -8.615850e-47 |
| Msa0471210 | Msa1458370 | 0.827833 | 1.257824e-54 | -8.615850e-47 |
| Msa1036360 | Msa1458370 | -0.822960 | 1.790802e-53 | -8.615850e-47 |
| Msa1050320 | Msa1458370 | -0.807962 | 3.912276e-50 | -8.615850e-47 |
| Msa1061760 | Msa1458370 | 0.810827 | 9.496857e-51 | -8.615850e-47 |
| Msa1076640 | Msa1458370 | -0.824822 | 6.553291e-54 | -8.615850e-47 |
| Msa1101300 | Msa1458370 | -0.801302 | 9.601044e-49 | -8.615850e-47 |
| Msa0266380 | Msa1458370 | -0.803301 | 3.722023e-49 | -8.615850e-47 |
| Msa0341860 | Msa1458370 | -0.804484 | 2.112976e-49 | -8.615850e-47 |
| Msa1113210 | Msa1458370 | -0.830338 | 3.106308e-55 | -8.615850e-47 |
| Msa1113280 | Msa1458370 | -0.825370 | 4.863747e-54 | -8.615850e-47 |
| Msa1157310 | Msa1458370 | -0.804734 | 1.873990e-49 | -8.615850e-47 |
| Msa1171630 | Msa1458370 | 0.893985 | 3.772858e-75 | -8.615850e-47 |
| Msa1182400 | Msa1458370 | -0.823686 | 1.212045e-53 | -8.615850e-47 |
| Msa1194170 | Msa1458370 | 0.807488 | 4.931898e-50 | -8.615850e-47 |
| Msa1199750 | Msa1458370 | -0.826197 | 3.095794e-54 | -8.615850e-47 |
| Msa0515930 | Msa1458370 | 0.813990 | 1.934456e-51 | -8.615850e-47 |
| Msa0560370 | Msa1458370 | -0.809180 | 2.148993e-50 | -8.615850e-47 |
| Msa0861480 | Msa1458370 | -0.802382 | 5.759986e-49 | -8.615850e-47 |
| Msa0868040 | Msa1458370 | -0.809803 | 1.579885e-50 | -8.615850e-47 |
| Msa0883410 | Msa1458370 | -0.801341 | 9.424932e-49 | -8.615850e-47 |
| Msa0887000 | Msa1458370 | -0.807176 | 5.742658e-50 | -8.615850e-47 |
| Msa0931370 | Msa1458370 | 0.801004 | 1.104893e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458370 | MtrunA17_Chr3g0112131 | 97.125 | 313 | 4 | 3 | 1 | 308 | 1 | 313 | 0.0 | 596 |
| Msa1458370 | MtrunA17_Chr1g0168121 | 64.681 | 235 | 80 | 1 | 74 | 305 | 40 | 274 | 6.32e-81 | 246 |
| Msa1458370 | MtrunA17_Chr5g0443311 | 52.232 | 224 | 84 | 2 | 76 | 299 | 51 | 251 | 2.23e-69 | 216 |
| Msa1458370 | MtrunA17_Chr1g0190051 | 51.136 | 264 | 119 | 3 | 1 | 257 | 1 | 261 | 2.57e-69 | 218 |
| Msa1458370 | MtrunA17_Chr8g0351651 | 57.727 | 220 | 76 | 1 | 27 | 229 | 20 | 239 | 2.72e-67 | 213 |
| Msa1458370 | MtrunA17_Chr5g0435681 | 47.401 | 327 | 146 | 6 | 1 | 302 | 1 | 326 | 4.39e-66 | 210 |
| Msa1458370 | MtrunA17_Chr5g0398531 | 61.780 | 191 | 61 | 1 | 52 | 230 | 64 | 254 | 2.57e-65 | 208 |
| Msa1458370 | MtrunA17_Chr7g0250031 | 67.516 | 157 | 45 | 1 | 85 | 241 | 66 | 216 | 1.07e-61 | 197 |
| Msa1458370 | MtrunA17_Chr4g0054651 | 53.226 | 248 | 101 | 4 | 53 | 298 | 51 | 285 | 1.67e-60 | 194 |
| Msa1458370 | MtrunA17_Chr3g0133051 | 44.030 | 268 | 112 | 10 | 57 | 308 | 45 | 290 | 8.14e-58 | 187 |
| Msa1458370 | MtrunA17_Chr5g0427311 | 51.163 | 172 | 74 | 4 | 85 | 246 | 60 | 231 | 1.49e-44 | 152 |
| Msa1458370 | MtrunA17_Chr1g0186441 | 46.053 | 152 | 36 | 1 | 74 | 225 | 63 | 168 | 2.17e-35 | 128 |
| Msa1458370 | MtrunA17_Chr3g0094471 | 35.023 | 217 | 111 | 4 | 32 | 222 | 15 | 227 | 8.65e-32 | 120 |
| Msa1458370 | MtrunA17_Chr5g0441851 | 37.423 | 163 | 91 | 2 | 72 | 223 | 73 | 235 | 7.34e-30 | 113 |
| Msa1458370 | MtrunA17_Chr5g0397551 | 36.416 | 173 | 103 | 4 | 76 | 242 | 104 | 275 | 7.25e-24 | 99.4 |
| Msa1458370 | MtrunA17_Chr6g0476061 | 43.966 | 116 | 62 | 1 | 103 | 215 | 130 | 245 | 1.87e-23 | 98.2 |
| Msa1458370 | MtrunA17_Chr5g0441901 | 36.646 | 161 | 92 | 3 | 68 | 219 | 67 | 226 | 2.25e-23 | 95.9 |
| Msa1458370 | MtrunA17_Chr1g0186461 | 44.375 | 160 | 40 | 5 | 67 | 225 | 42 | 153 | 2.92e-23 | 94.4 |
| Msa1458370 | MtrunA17_Chr4g0028181 | 33.929 | 168 | 99 | 4 | 68 | 225 | 45 | 210 | 3.16e-23 | 96.7 |
| Msa1458370 | MtrunA17_Chr1g0179461 | 42.982 | 114 | 61 | 2 | 106 | 215 | 148 | 261 | 9.74e-23 | 97.1 |
| Msa1458370 | MtrunA17_Chr1g0190011 | 42.857 | 112 | 63 | 1 | 106 | 216 | 112 | 223 | 1.79e-22 | 95.5 |
| Msa1458370 | MtrunA17_Chr1g0161621 | 32.530 | 166 | 96 | 5 | 72 | 223 | 97 | 260 | 1.43e-21 | 92.4 |
| Msa1458370 | MtrunA17_Chr1g0175001 | 32.515 | 163 | 101 | 2 | 72 | 225 | 81 | 243 | 1.54e-21 | 92.0 |
| Msa1458370 | MtrunA17_Chr4g0028211 | 33.333 | 162 | 98 | 3 | 72 | 223 | 32 | 193 | 2.14e-21 | 90.9 |
| Msa1458370 | MtrunA17_Chr5g0441441 | 34.177 | 158 | 88 | 2 | 76 | 222 | 50 | 202 | 3.43e-21 | 90.1 |
| Msa1458370 | MtrunA17_Chr7g0247431 | 38.514 | 148 | 85 | 2 | 74 | 215 | 125 | 272 | 6.36e-20 | 88.6 |
| Msa1458370 | MtrunA17_Chr8g0386741 | 36.496 | 137 | 83 | 3 | 95 | 228 | 158 | 293 | 7.47e-19 | 85.9 |
| Msa1458370 | MtrunA17_Chr1g0188211 | 43.966 | 116 | 61 | 2 | 103 | 215 | 134 | 248 | 8.00e-19 | 85.5 |
| Msa1458370 | MtrunA17_Chr8g0351761 | 36.943 | 157 | 83 | 3 | 106 | 258 | 145 | 289 | 8.77e-19 | 85.5 |
| Msa1458370 | MtrunA17_Chr4g0054661 | 32.536 | 209 | 112 | 6 | 19 | 215 | 65 | 256 | 1.19e-18 | 85.1 |
| Msa1458370 | MtrunA17_Chr7g0274821 | 42.982 | 114 | 63 | 2 | 103 | 215 | 143 | 255 | 2.32e-18 | 84.3 |
| Msa1458370 | MtrunA17_Chr7g0245841 | 43.363 | 113 | 61 | 1 | 106 | 215 | 130 | 242 | 1.70e-17 | 81.6 |
| Msa1458370 | MtrunA17_Chr8g0349091 | 41.096 | 146 | 80 | 3 | 76 | 215 | 125 | 270 | 2.11e-17 | 81.6 |
| Msa1458370 | MtrunA17_Chr5g0398621 | 35.115 | 131 | 71 | 3 | 106 | 229 | 100 | 223 | 6.91e-17 | 78.6 |
| Msa1458370 | MtrunA17_Chr8g0374021 | 35.714 | 126 | 71 | 3 | 107 | 223 | 5 | 129 | 3.26e-16 | 74.7 |
| Msa1458370 | MtrunA17_Chr4g0034501 | 36.634 | 101 | 64 | 0 | 70 | 170 | 28 | 128 | 4.93e-16 | 74.7 |
| Msa1458370 | MtrunA17_Chr4g0027371 | 41.176 | 119 | 58 | 3 | 106 | 215 | 22 | 137 | 2.47e-15 | 74.3 |
| Msa1458370 | MtrunA17_Chr4g0056761 | 42.982 | 114 | 61 | 1 | 106 | 215 | 147 | 260 | 9.46e-15 | 73.6 |
| Msa1458370 | MtrunA17_Chr6g0476241 | 40.541 | 111 | 64 | 2 | 106 | 216 | 180 | 288 | 1.41e-14 | 72.8 |
| Msa1458370 | MtrunA17_Chr4g0027351 | 40.187 | 107 | 62 | 2 | 106 | 210 | 22 | 128 | 8.48e-13 | 64.7 |
| Msa1458370 | MtrunA17_Chr4g0027331 | 38.889 | 108 | 60 | 2 | 106 | 207 | 22 | 129 | 5.14e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458370 | AT3G55560.1 | 52.647 | 340 | 99 | 10 | 1 | 308 | 1 | 310 | 2.99e-80 | 246 |
| Msa1458370 | AT4G14465.1 | 62.613 | 222 | 66 | 3 | 76 | 296 | 67 | 272 | 1.12e-75 | 233 |
| Msa1458370 | AT1G76500.1 | 60.541 | 185 | 63 | 2 | 52 | 227 | 49 | 232 | 3.50e-69 | 218 |
| Msa1458370 | AT2G42940.1 | 49.778 | 225 | 86 | 3 | 75 | 299 | 52 | 249 | 1.13e-64 | 204 |
| Msa1458370 | AT2G45430.1 | 56.170 | 235 | 87 | 6 | 76 | 302 | 89 | 315 | 7.99e-64 | 204 |
| Msa1458370 | AT3G04570.1 | 53.279 | 244 | 88 | 5 | 1 | 225 | 1 | 237 | 1.60e-63 | 203 |
| Msa1458370 | AT3G60870.1 | 52.423 | 227 | 86 | 4 | 76 | 302 | 59 | 263 | 2.96e-63 | 201 |
| Msa1458370 | AT2G35270.1 | 65.584 | 154 | 53 | 0 | 76 | 229 | 78 | 231 | 1.11e-62 | 200 |
| Msa1458370 | AT4G22810.1 | 70.064 | 157 | 44 | 1 | 76 | 229 | 105 | 261 | 7.44e-59 | 191 |
| Msa1458370 | AT4G12050.1 | 69.677 | 155 | 46 | 1 | 76 | 229 | 118 | 272 | 2.06e-58 | 191 |
| Msa1458370 | AT4G35390.1 | 59.296 | 199 | 79 | 1 | 27 | 223 | 14 | 212 | 3.98e-56 | 184 |
| Msa1458370 | AT5G49700.1 | 51.010 | 198 | 74 | 3 | 76 | 250 | 56 | 253 | 5.58e-56 | 182 |
| Msa1458370 | AT4G17800.1 | 66.207 | 145 | 49 | 0 | 85 | 229 | 91 | 235 | 2.41e-55 | 181 |
| Msa1458370 | AT1G20900.1 | 58.730 | 189 | 69 | 1 | 46 | 225 | 56 | 244 | 2.61e-53 | 177 |
| Msa1458370 | AT1G14490.2 | 50.877 | 171 | 75 | 3 | 66 | 229 | 14 | 182 | 1.32e-42 | 146 |
| Msa1458370 | AT1G14490.1 | 52.500 | 160 | 67 | 3 | 77 | 229 | 6 | 163 | 2.64e-42 | 145 |
| Msa1458370 | AT2G33620.1 | 43.243 | 148 | 80 | 3 | 71 | 215 | 132 | 278 | 7.56e-25 | 102 |
| Msa1458370 | AT2G33620.4 | 43.243 | 148 | 80 | 3 | 71 | 215 | 132 | 278 | 7.56e-25 | 102 |
| Msa1458370 | AT2G33620.2 | 43.243 | 148 | 80 | 3 | 71 | 215 | 132 | 278 | 7.56e-25 | 102 |
| Msa1458370 | AT2G33620.3 | 43.243 | 148 | 80 | 3 | 71 | 215 | 132 | 278 | 7.56e-25 | 102 |
| Msa1458370 | AT4G12080.1 | 44.538 | 119 | 59 | 2 | 106 | 219 | 173 | 289 | 1.14e-24 | 102 |
| Msa1458370 | AT4G25320.1 | 45.133 | 113 | 59 | 1 | 106 | 215 | 169 | 281 | 1.84e-23 | 99.8 |
| Msa1458370 | AT4G17950.1 | 42.759 | 145 | 76 | 3 | 76 | 215 | 196 | 338 | 2.00e-23 | 100 |
| Msa1458370 | AT5G51590.1 | 44.348 | 115 | 57 | 2 | 106 | 215 | 181 | 293 | 3.56e-23 | 99.0 |
| Msa1458370 | AT5G62260.2 | 38.710 | 124 | 73 | 1 | 103 | 223 | 160 | 283 | 6.17e-23 | 96.7 |
| Msa1458370 | AT2G45850.1 | 41.096 | 146 | 80 | 3 | 76 | 215 | 132 | 277 | 7.08e-23 | 97.4 |
| Msa1458370 | AT2G45850.2 | 41.096 | 146 | 80 | 3 | 76 | 215 | 132 | 277 | 7.08e-23 | 97.4 |
| Msa1458370 | AT1G63470.1 | 37.415 | 147 | 85 | 3 | 76 | 216 | 147 | 292 | 1.76e-22 | 96.7 |
| Msa1458370 | AT3G04590.1 | 42.727 | 110 | 63 | 0 | 106 | 215 | 174 | 283 | 2.96e-22 | 95.1 |
| Msa1458370 | AT3G04590.2 | 42.727 | 110 | 63 | 0 | 106 | 215 | 174 | 283 | 3.88e-22 | 96.3 |
| Msa1458370 | AT5G62260.1 | 39.655 | 116 | 67 | 1 | 103 | 215 | 160 | 275 | 7.70e-22 | 95.1 |
| Msa1458370 | AT5G62260.3 | 39.655 | 116 | 67 | 1 | 103 | 215 | 160 | 275 | 7.70e-22 | 95.1 |
| Msa1458370 | AT2G45850.3 | 40.136 | 147 | 82 | 3 | 76 | 216 | 132 | 278 | 3.45e-21 | 91.7 |
| Msa1458370 | AT4G00200.2 | 43.103 | 116 | 63 | 1 | 106 | 218 | 126 | 241 | 8.30e-18 | 82.8 |
| Msa1458370 | AT4G00200.1 | 43.103 | 116 | 63 | 1 | 106 | 218 | 126 | 241 | 8.30e-18 | 82.8 |
| Msa1458370 | AT4G22770.2 | 43.333 | 120 | 65 | 1 | 106 | 222 | 153 | 272 | 1.75e-17 | 82.0 |
| Msa1458370 | AT4G22770.1 | 43.333 | 120 | 65 | 1 | 106 | 222 | 153 | 272 | 1.75e-17 | 82.0 |
| Msa1458370 | AT5G46640.1 | 40.972 | 144 | 80 | 2 | 76 | 216 | 155 | 296 | 1.68e-16 | 79.7 |
| Msa1458370 | AT1G63480.2 | 32.051 | 156 | 94 | 4 | 66 | 215 | 125 | 274 | 1.94e-16 | 79.3 |
| Msa1458370 | AT1G63480.1 | 32.051 | 156 | 94 | 4 | 66 | 215 | 125 | 274 | 1.94e-16 | 79.3 |
| Msa1458370 | AT3G61310.1 | 36.986 | 146 | 86 | 2 | 76 | 215 | 134 | 279 | 2.16e-16 | 79.0 |
| Msa1458370 | AT1G63480.5 | 32.051 | 156 | 94 | 4 | 66 | 215 | 119 | 268 | 2.37e-16 | 79.0 |
| Msa1458370 | AT1G63480.7 | 32.051 | 156 | 94 | 4 | 66 | 215 | 119 | 268 | 2.37e-16 | 79.0 |
| Msa1458370 | AT1G63480.4 | 32.051 | 156 | 94 | 4 | 66 | 215 | 119 | 268 | 2.37e-16 | 79.0 |
| Msa1458370 | AT1G63480.3 | 32.051 | 156 | 94 | 4 | 66 | 215 | 119 | 268 | 2.37e-16 | 79.0 |
| Msa1458370 | AT1G63480.6 | 32.051 | 156 | 94 | 4 | 66 | 215 | 119 | 268 | 2.37e-16 | 79.0 |
| Msa1458370 | AT2G36560.1 | 33.043 | 115 | 72 | 2 | 106 | 215 | 108 | 222 | 9.88e-11 | 62.8 |
Find 99 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAGATACTTTCGCTTTC+GGG | 0.112808 | tig0039543:-6509 | Msa1458370:CDS |
| GCAGGTCCTTTGGTTGCTTC+TGG | 0.205503 | tig0039543:-6395 | Msa1458370:CDS |
| GTACCATTATGCAACAAATT+TGG | 0.220914 | tig0039543:+6146 | Msa1458370:intergenic |
| CAGGAGCAGCCGGCTGTCTA+AGG | 0.232707 | tig0039543:+6558 | Msa1458370:intergenic |
| GTTGTTGGTGGTTCTGTTGC+AGG | 0.265821 | tig0039543:-6413 | Msa1458370:CDS |
| CCTTCTCCGGCTGGAGCTAC+TGG | 0.276244 | tig0039543:-6470 | Msa1458370:CDS |
| TTCTTCTCAAGGTTTGGAAT+TGG | 0.278560 | tig0039543:-6222 | Msa1458370:CDS |
| GGTTATAACAATGGGTGGTT+TGG | 0.288461 | tig0039543:+6724 | Msa1458370:intergenic |
| TTGCTGTTGCTGCTGTTTGT+TGG | 0.296688 | tig0039543:+6860 | Msa1458370:intergenic |
| GAAGGAGGAGGACGAGGAGG+TGG | 0.303163 | tig0039543:+6092 | Msa1458370:intergenic |
| GTTATAACAATGGGTGGTTT+GGG | 0.305692 | tig0039543:+6725 | Msa1458370:intergenic |
| AAATGCCTCATGATGTGTTT+TGG | 0.306421 | tig0039543:-6121 | Msa1458370:CDS |
| CCTCCAAATTTGTTGCATAA+TGG | 0.306945 | tig0039543:-6149 | Msa1458370:CDS |
| TCTTCTCAAGGTTTGGAATT+GGG | 0.309314 | tig0039543:-6221 | Msa1458370:CDS |
| GGTTGCTTCTGGACCTGTTA+TGG | 0.315696 | tig0039543:-6384 | Msa1458370:CDS |
| TGTTTATTTAGCTGGTGGTC+AGG | 0.322450 | tig0039543:-6441 | Msa1458370:CDS |
| GGTGGTCAGGGGCAGGTTGT+TGG | 0.325929 | tig0039543:-6428 | Msa1458370:CDS |
| GGTGGTGTTATTACTCTTCA+TGG | 0.329783 | tig0039543:-6536 | Msa1458370:CDS |
| TAGCTCTTCTTCTCAAGGTT+TGG | 0.337613 | tig0039543:-6228 | Msa1458370:CDS |
| ATTCGAGATACTTTCGCTTT+CGG | 0.341376 | tig0039543:-6510 | Msa1458370:CDS |
| CTACCTCCGCCTTCTCCGGC+TGG | 0.357947 | tig0039543:-6479 | Msa1458370:CDS |
| ACATGGCTTCTTAGCGCGTT+GGG | 0.359556 | tig0039543:+6692 | Msa1458370:intergenic |
| GAAAAGAGAGCAAGAGTTGA+TGG | 0.369566 | tig0039543:-6906 | Msa1458370:CDS |
| GGATTAACTGTTTATTTAGC+TGG | 0.378249 | tig0039543:-6449 | Msa1458370:CDS |
| GTAGCAGCAATAACCATAAC+AGG | 0.415453 | tig0039543:+6371 | Msa1458370:intergenic |
| GTGGGCTGGAAATGTGGCTA+TGG | 0.419505 | tig0039543:-6975 | Msa1458370:CDS |
| GGAGGAGGACGAGGAGGTGG+AGG | 0.420358 | tig0039543:+6095 | Msa1458370:intergenic |
| TTTAGCTGGTGGTCAGGGGC+AGG | 0.423340 | tig0039543:-6435 | Msa1458370:CDS |
| CTTAGACAGCCGGCTGCTCC+TGG | 0.434867 | tig0039543:-6557 | Msa1458370:CDS |
| TGGTTCTGTTGCAGGTCCTT+TGG | 0.443762 | tig0039543:-6405 | Msa1458370:CDS |
| GGTCAGGGGCAGGTTGTTGG+TGG | 0.444022 | tig0039543:-6425 | Msa1458370:CDS |
| CCACTGCTACCTGGCTCAGA+TGG | 0.446968 | tig0039543:+6791 | Msa1458370:intergenic |
| CTCCGACCACCACTGCTACC+TGG | 0.451310 | tig0039543:+6782 | Msa1458370:intergenic |
| ATGGCAAATCGTTGGTGGGC+TGG | 0.456372 | tig0039543:-6989 | Msa1458370:CDS |
| GACATGGCTTCTTAGCGCGT+TGG | 0.461821 | tig0039543:+6691 | Msa1458370:intergenic |
| AGCTAACTCTTTCAGAAAGA+AGG | 0.464345 | tig0039543:+6074 | Msa1458370:intergenic |
| GTTACTAGCTCTTCTTCTCA+AGG | 0.469725 | tig0039543:-6233 | Msa1458370:CDS |
| GTTTATTTAGCTGGTGGTCA+GGG | 0.471442 | tig0039543:-6440 | Msa1458370:CDS |
| GTGACGGCGGTTAGCGAAGT+TGG | 0.480136 | tig0039543:+6628 | Msa1458370:intergenic |
| CACTGCTACCTGGCTCAGAT+GGG | 0.484019 | tig0039543:+6792 | Msa1458370:intergenic |
| CAGAAAGAAGGAGGAGGACG+AGG | 0.494395 | tig0039543:+6086 | Msa1458370:intergenic |
| GCATCATCAACAATTACAAC+AGG | 0.495081 | tig0039543:-6195 | Msa1458370:CDS |
| ACCACCTTGTTCATCTTCCA+AGG | 0.497250 | tig0039543:+6319 | Msa1458370:intergenic |
| TTTGGAGGCAAATTATACAT+AGG | 0.498673 | tig0039543:+6164 | Msa1458370:intergenic |
| GAAATGCAAGTTCAACAATC+TGG | 0.502411 | tig0039543:-6284 | Msa1458370:CDS |
| TTCAGATGTTCAAGTGATGA+TGG | 0.505534 | tig0039543:+6926 | Msa1458370:intergenic |
| GATTCTTTGGTTATAACAAT+GGG | 0.518538 | tig0039543:+6716 | Msa1458370:intergenic |
| GGATTCTTTGGTTATAACAA+TGG | 0.520979 | tig0039543:+6715 | Msa1458370:intergenic |
| TACTTATGAGAGGTTGCCCT+TGG | 0.521945 | tig0039543:-6336 | Msa1458370:CDS |
| TGGGCTGGAAATGTGGCTAT+GGG | 0.522347 | tig0039543:-6974 | Msa1458370:CDS |
| CCGCCGTCACCGTGGTGTGT+CGG | 0.526432 | tig0039543:-6615 | Msa1458370:CDS |
| GTAGCTCCAGCCGGAGAAGG+CGG | 0.528688 | tig0039543:+6473 | Msa1458370:intergenic |
| CCAGTAGCTCCAGCCGGAGA+AGG | 0.532784 | tig0039543:+6470 | Msa1458370:intergenic |
| CACTGCTGATTTCCAAGACA+TGG | 0.534335 | tig0039543:+6675 | Msa1458370:intergenic |
| GAACAAAACCCATCTGAGCC+AGG | 0.536402 | tig0039543:-6800 | Msa1458370:CDS |
| AGGCCACGTGGGAGACCACC+AGG | 0.537133 | tig0039543:-6761 | Msa1458370:CDS |
| GCTCCAGCCGGAGAAGGCGG+AGG | 0.543492 | tig0039543:+6476 | Msa1458370:intergenic |
| TTAACTGTTTATTTAGCTGG+TGG | 0.548179 | tig0039543:-6446 | Msa1458370:CDS |
| AAACCGACACACCACGGTGA+CGG | 0.553487 | tig0039543:+6612 | Msa1458370:intergenic |
| CCATTATGCAACAAATTTGG+AGG | 0.558327 | tig0039543:+6149 | Msa1458370:intergenic |
| TAATGTAACCCTTAGACAGC+CGG | 0.563997 | tig0039543:-6567 | Msa1458370:CDS |
| AGATTATGGCAAATCGTTGG+TGG | 0.564432 | tig0039543:-6994 | None:intergenic |
| ATAACACCACCAGGAGCAGC+CGG | 0.567921 | tig0039543:+6548 | Msa1458370:intergenic |
| TTTATTTAGCTGGTGGTCAG+GGG | 0.570136 | tig0039543:-6439 | Msa1458370:CDS |
| AGGAGCAGCCGGCTGTCTAA+GGG | 0.570747 | tig0039543:+6559 | None:intergenic |
| CATGGCTTCTTAGCGCGTTG+GGG | 0.572748 | tig0039543:+6693 | None:intergenic |
| TCAAGTGATGATGGTGATGA+AGG | 0.576683 | tig0039543:+6935 | None:intergenic |
| AGAAGATTATGGCAAATCGT+TGG | 0.586611 | tig0039543:-6997 | None:intergenic |
| TTGCTAATGCTACTTATGAG+AGG | 0.586891 | tig0039543:-6346 | Msa1458370:CDS |
| TCTTTGGTTATAACAATGGG+TGG | 0.587176 | tig0039543:+6719 | Msa1458370:intergenic |
| CTCTTTCAGAAAGAAGGAGG+AGG | 0.588398 | tig0039543:+6080 | Msa1458370:intergenic |
| AGCCAGGTAGCAGTGGTGGT+CGG | 0.589179 | tig0039543:-6784 | Msa1458370:CDS |
| AGTGGTGGTCGGAGGCCACG+TGG | 0.591936 | tig0039543:-6773 | Msa1458370:CDS |
| GCAAGTTCAACAATCTGGTG+TGG | 0.593311 | tig0039543:-6279 | Msa1458370:CDS |
| ATGGCTTCTTAGCGCGTTGG+GGG | 0.597936 | tig0039543:+6694 | None:intergenic |
| GATTATGGCAAATCGTTGGT+GGG | 0.599720 | tig0039543:-6993 | None:intergenic |
| TCTGAGCCAGGTAGCAGTGG+TGG | 0.601683 | tig0039543:-6788 | Msa1458370:CDS |
| CCATCTGAGCCAGGTAGCAG+TGG | 0.602057 | tig0039543:-6791 | Msa1458370:CDS |
| AAAGAAGGAGGAGGACGAGG+AGG | 0.613275 | tig0039543:+6089 | Msa1458370:intergenic |
| CCGACACACCACGGTGACGG+CGG | 0.613394 | tig0039543:+6615 | Msa1458370:intergenic |
| TTCGCTAACCGCCGTCACCG+TGG | 0.613458 | tig0039543:-6623 | Msa1458370:CDS |
| CAGGTAGCAGTGGTGGTCGG+AGG | 0.616953 | tig0039543:-6781 | Msa1458370:CDS |
| GTTAATCCAGTAGCTCCAGC+CGG | 0.618525 | tig0039543:+6464 | Msa1458370:intergenic |
| ACAAGGTGGTGGTGATCAAG+AGG | 0.619032 | tig0039543:-6306 | Msa1458370:CDS |
| CCACCTTGTTCATCTTCCAA+GGG | 0.619149 | tig0039543:+6320 | Msa1458370:intergenic |
| GTGGTGGTCGGAGGCCACGT+GGG | 0.622577 | tig0039543:-6772 | Msa1458370:CDS |
| TCGTTGGTGGGCTGGAAATG+TGG | 0.623949 | tig0039543:-6981 | Msa1458370:CDS |
| CAGCAGTGGTAGTGATGTGG+CGG | 0.628263 | tig0039543:-6660 | Msa1458370:CDS |
| CACTCAAAACCGACACACCA+CGG | 0.631096 | tig0039543:+6606 | Msa1458370:intergenic |
| TAACTCTTTCAGAAAGAAGG+AGG | 0.635542 | tig0039543:+6077 | Msa1458370:intergenic |
| GGACCCCAAAACACATCATG+AGG | 0.638475 | tig0039543:+6116 | Msa1458370:intergenic |
| TTGGAAGATGAACAAGGTGG+TGG | 0.639490 | tig0039543:-6317 | Msa1458370:CDS |
| GATCCTGGTGGTCTCCCACG+TGG | 0.640272 | tig0039543:+6758 | Msa1458370:intergenic |
| TTGCCCTTGGAAGATGAACA+AGG | 0.667444 | tig0039543:-6323 | Msa1458370:CDS |
| TGAAGAGTAATAACACCACC+AGG | 0.674054 | tig0039543:+6539 | Msa1458370:intergenic |
| CATGTCTTGGAAATCAGCAG+TGG | 0.685401 | tig0039543:-6674 | Msa1458370:CDS |
| ACAGGTCCAGAAGCAACCAA+AGG | 0.692630 | tig0039543:+6389 | Msa1458370:intergenic |
| AATCAGCAGTGGTAGTGATG+TGG | 0.709338 | tig0039543:-6663 | Msa1458370:CDS |
| CCCTTGGAAGATGAACAAGG+TGG | 0.848232 | tig0039543:-6320 | Msa1458370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GATTCTTTGGTTATAACAAT+GGG | + | tig0039543:6361-6380 | Msa1458370:intergenic | 25.0% |
| ! | GATTCTTTGGTTATAACAAT+GGG | + | tig0039543:6361-6380 | Msa1458370:intergenic | 25.0% |
| GGATTCTTTGGTTATAACAA+TGG | + | tig0039543:6362-6381 | Msa1458370:intergenic | 30.0% | |
| GGATTAACTGTTTATTTAGC+TGG | - | tig0039543:6625-6644 | Msa1458370:CDS | 30.0% | |
| TTAACTGTTTATTTAGCTGG+TGG | - | tig0039543:6628-6647 | Msa1458370:CDS | 30.0% | |
| TTTGGAGGCAAATTATACAT+AGG | + | tig0039543:6913-6932 | Msa1458370:intergenic | 30.0% | |
| GTACCATTATGCAACAAATT+TGG | + | tig0039543:6931-6950 | Msa1458370:intergenic | 30.0% | |
| GGATTCTTTGGTTATAACAA+TGG | + | tig0039543:6362-6381 | Msa1458370:intergenic | 30.0% | |
| GGATTAACTGTTTATTTAGC+TGG | - | tig0039543:6625-6644 | Msa1458370:CDS | 30.0% | |
| TTAACTGTTTATTTAGCTGG+TGG | - | tig0039543:6628-6647 | Msa1458370:CDS | 30.0% | |
| TTTGGAGGCAAATTATACAT+AGG | + | tig0039543:6913-6932 | Msa1458370:intergenic | 30.0% | |
| GTACCATTATGCAACAAATT+TGG | + | tig0039543:6931-6950 | Msa1458370:intergenic | 30.0% | |
| TTCAGATGTTCAAGTGATGA+TGG | + | tig0039543:6151-6170 | Msa1458370:intergenic | 35.0% | |
| GTTATAACAATGGGTGGTTT+GGG | + | tig0039543:6352-6371 | Msa1458370:intergenic | 35.0% | |
| TCTTTGGTTATAACAATGGG+TGG | + | tig0039543:6358-6377 | Msa1458370:intergenic | 35.0% | |
| ATTCGAGATACTTTCGCTTT+CGG | - | tig0039543:6564-6583 | Msa1458370:CDS | 35.0% | |
| ! | TTGCTAATGCTACTTATGAG+AGG | - | tig0039543:6728-6747 | Msa1458370:CDS | 35.0% |
| GAAATGCAAGTTCAACAATC+TGG | - | tig0039543:6790-6809 | Msa1458370:CDS | 35.0% | |
| ! | TTCTTCTCAAGGTTTGGAAT+TGG | - | tig0039543:6852-6871 | Msa1458370:CDS | 35.0% |
| ! | TCTTCTCAAGGTTTGGAATT+GGG | - | tig0039543:6853-6872 | Msa1458370:CDS | 35.0% |
| GCATCATCAACAATTACAAC+AGG | - | tig0039543:6879-6898 | Msa1458370:CDS | 35.0% | |
| CCATTATGCAACAAATTTGG+AGG | + | tig0039543:6928-6947 | Msa1458370:intergenic | 35.0% | |
| !! | CCTCCAAATTTGTTGCATAA+TGG | - | tig0039543:6925-6944 | Msa1458370:CDS | 35.0% |
| ! | AAATGCCTCATGATGTGTTT+TGG | - | tig0039543:6953-6972 | Msa1458370:CDS | 35.0% |
| ! | AATGCCTCATGATGTGTTTT+GGG | - | tig0039543:6954-6973 | Msa1458370:CDS | 35.0% |
| TTCAGATGTTCAAGTGATGA+TGG | + | tig0039543:6151-6170 | Msa1458370:intergenic | 35.0% | |
| GTTATAACAATGGGTGGTTT+GGG | + | tig0039543:6352-6371 | Msa1458370:intergenic | 35.0% | |
| TCTTTGGTTATAACAATGGG+TGG | + | tig0039543:6358-6377 | Msa1458370:intergenic | 35.0% | |
| ATTCGAGATACTTTCGCTTT+CGG | - | tig0039543:6564-6583 | Msa1458370:CDS | 35.0% | |
| ! | TTGCTAATGCTACTTATGAG+AGG | - | tig0039543:6728-6747 | Msa1458370:CDS | 35.0% |
| GAAATGCAAGTTCAACAATC+TGG | - | tig0039543:6790-6809 | Msa1458370:CDS | 35.0% | |
| ! | TTCTTCTCAAGGTTTGGAAT+TGG | - | tig0039543:6852-6871 | Msa1458370:CDS | 35.0% |
| ! | TCTTCTCAAGGTTTGGAATT+GGG | - | tig0039543:6853-6872 | Msa1458370:CDS | 35.0% |
| GCATCATCAACAATTACAAC+AGG | - | tig0039543:6879-6898 | Msa1458370:CDS | 35.0% | |
| CCATTATGCAACAAATTTGG+AGG | + | tig0039543:6928-6947 | Msa1458370:intergenic | 35.0% | |
| !! | CCTCCAAATTTGTTGCATAA+TGG | - | tig0039543:6925-6944 | Msa1458370:CDS | 35.0% |
| ! | AAATGCCTCATGATGTGTTT+TGG | - | tig0039543:6953-6972 | Msa1458370:CDS | 35.0% |
| ! | AATGCCTCATGATGTGTTTT+GGG | - | tig0039543:6954-6973 | Msa1458370:CDS | 35.0% |
| !! | TCAAGTGATGATGGTGATGA+AGG | + | tig0039543:6142-6161 | Msa1458370:intergenic | 40.0% |
| GAAAAGAGAGCAAGAGTTGA+TGG | - | tig0039543:6168-6187 | Msa1458370:CDS | 40.0% | |
| CAACAACAACAACAACGAAG+AGG | - | tig0039543:6234-6253 | Msa1458370:CDS | 40.0% | |
| !!! | TTGGGTTTGTTTTTGGATCC+TGG | + | tig0039543:6334-6353 | Msa1458370:intergenic | 40.0% |
| GGTTATAACAATGGGTGGTT+TGG | + | tig0039543:6353-6372 | Msa1458370:intergenic | 40.0% | |
| TAATGTAACCCTTAGACAGC+CGG | - | tig0039543:6507-6526 | Msa1458370:CDS | 40.0% | |
| TGAAGAGTAATAACACCACC+AGG | + | tig0039543:6538-6557 | Msa1458370:intergenic | 40.0% | |
| !! | GGTGGTGTTATTACTCTTCA+TGG | - | tig0039543:6538-6557 | Msa1458370:CDS | 40.0% |
| TTCGAGATACTTTCGCTTTC+GGG | - | tig0039543:6565-6584 | Msa1458370:CDS | 40.0% | |
| TGTTTATTTAGCTGGTGGTC+AGG | - | tig0039543:6633-6652 | Msa1458370:CDS | 40.0% | |
| GTTTATTTAGCTGGTGGTCA+GGG | - | tig0039543:6634-6653 | Msa1458370:CDS | 40.0% | |
| TTTATTTAGCTGGTGGTCAG+GGG | - | tig0039543:6635-6654 | Msa1458370:CDS | 40.0% | |
| GTAGCAGCAATAACCATAAC+AGG | + | tig0039543:6706-6725 | Msa1458370:intergenic | 40.0% | |
| ! | GTTACTAGCTCTTCTTCTCA+AGG | - | tig0039543:6841-6860 | Msa1458370:CDS | 40.0% |
| TAGCTCTTCTTCTCAAGGTT+TGG | - | tig0039543:6846-6865 | Msa1458370:CDS | 40.0% | |
| ! | ATGCCTCATGATGTGTTTTG+GGG | - | tig0039543:6955-6974 | Msa1458370:CDS | 40.0% |
| !! | TCAAGTGATGATGGTGATGA+AGG | + | tig0039543:6142-6161 | Msa1458370:intergenic | 40.0% |
| GAAAAGAGAGCAAGAGTTGA+TGG | - | tig0039543:6168-6187 | Msa1458370:CDS | 40.0% | |
| CAACAACAACAACAACGAAG+AGG | - | tig0039543:6234-6253 | Msa1458370:CDS | 40.0% | |
| !!! | TTGGGTTTGTTTTTGGATCC+TGG | + | tig0039543:6334-6353 | Msa1458370:intergenic | 40.0% |
| GGTTATAACAATGGGTGGTT+TGG | + | tig0039543:6353-6372 | Msa1458370:intergenic | 40.0% | |
| TAATGTAACCCTTAGACAGC+CGG | - | tig0039543:6507-6526 | Msa1458370:CDS | 40.0% | |
| TGAAGAGTAATAACACCACC+AGG | + | tig0039543:6538-6557 | Msa1458370:intergenic | 40.0% | |
| !! | GGTGGTGTTATTACTCTTCA+TGG | - | tig0039543:6538-6557 | Msa1458370:CDS | 40.0% |
| TTCGAGATACTTTCGCTTTC+GGG | - | tig0039543:6565-6584 | Msa1458370:CDS | 40.0% | |
| TGTTTATTTAGCTGGTGGTC+AGG | - | tig0039543:6633-6652 | Msa1458370:CDS | 40.0% | |
| GTTTATTTAGCTGGTGGTCA+GGG | - | tig0039543:6634-6653 | Msa1458370:CDS | 40.0% | |
| TTTATTTAGCTGGTGGTCAG+GGG | - | tig0039543:6635-6654 | Msa1458370:CDS | 40.0% | |
| GTAGCAGCAATAACCATAAC+AGG | + | tig0039543:6706-6725 | Msa1458370:intergenic | 40.0% | |
| ! | GTTACTAGCTCTTCTTCTCA+AGG | - | tig0039543:6841-6860 | Msa1458370:CDS | 40.0% |
| TAGCTCTTCTTCTCAAGGTT+TGG | - | tig0039543:6846-6865 | Msa1458370:CDS | 40.0% | |
| ! | ATGCCTCATGATGTGTTTTG+GGG | - | tig0039543:6955-6974 | Msa1458370:CDS | 40.0% |
| ! | TTGCTGTTGCTGCTGTTTGT+TGG | + | tig0039543:6217-6236 | Msa1458370:intergenic | 45.0% |
| !!! | GGTTTGTTTTTGGATCCTGG+TGG | + | tig0039543:6331-6350 | Msa1458370:intergenic | 45.0% |
| !! | GGGTGGTTTGGGTTTGTTTT+TGG | + | tig0039543:6341-6360 | Msa1458370:intergenic | 45.0% |
| !! | CACTGCTGATTTCCAAGACA+TGG | + | tig0039543:6402-6421 | Msa1458370:intergenic | 45.0% |
| CATGTCTTGGAAATCAGCAG+TGG | - | tig0039543:6400-6419 | Msa1458370:CDS | 45.0% | |
| ! | AATCAGCAGTGGTAGTGATG+TGG | - | tig0039543:6411-6430 | Msa1458370:CDS | 45.0% |
| TACTTATGAGAGGTTGCCCT+TGG | - | tig0039543:6738-6757 | Msa1458370:CDS | 45.0% | |
| TTGCCCTTGGAAGATGAACA+AGG | - | tig0039543:6751-6770 | Msa1458370:CDS | 45.0% | |
| CCACCTTGTTCATCTTCCAA+GGG | + | tig0039543:6757-6776 | Msa1458370:intergenic | 45.0% | |
| ACCACCTTGTTCATCTTCCA+AGG | + | tig0039543:6758-6777 | Msa1458370:intergenic | 45.0% | |
| TTGGAAGATGAACAAGGTGG+TGG | - | tig0039543:6757-6776 | Msa1458370:CDS | 45.0% | |
| GCAAGTTCAACAATCTGGTG+TGG | - | tig0039543:6795-6814 | Msa1458370:CDS | 45.0% | |
| ! | TTGCTGTTGCTGCTGTTTGT+TGG | + | tig0039543:6217-6236 | Msa1458370:intergenic | 45.0% |
| !!! | GGTTTGTTTTTGGATCCTGG+TGG | + | tig0039543:6331-6350 | Msa1458370:intergenic | 45.0% |
| !! | GGGTGGTTTGGGTTTGTTTT+TGG | + | tig0039543:6341-6360 | Msa1458370:intergenic | 45.0% |
| !! | CACTGCTGATTTCCAAGACA+TGG | + | tig0039543:6402-6421 | Msa1458370:intergenic | 45.0% |
| CATGTCTTGGAAATCAGCAG+TGG | - | tig0039543:6400-6419 | Msa1458370:CDS | 45.0% | |
| ! | AATCAGCAGTGGTAGTGATG+TGG | - | tig0039543:6411-6430 | Msa1458370:CDS | 45.0% |
| TACTTATGAGAGGTTGCCCT+TGG | - | tig0039543:6738-6757 | Msa1458370:CDS | 45.0% | |
| TTGCCCTTGGAAGATGAACA+AGG | - | tig0039543:6751-6770 | Msa1458370:CDS | 45.0% | |
| CCACCTTGTTCATCTTCCAA+GGG | + | tig0039543:6757-6776 | Msa1458370:intergenic | 45.0% | |
| ACCACCTTGTTCATCTTCCA+AGG | + | tig0039543:6758-6777 | Msa1458370:intergenic | 45.0% | |
| TTGGAAGATGAACAAGGTGG+TGG | - | tig0039543:6757-6776 | Msa1458370:CDS | 45.0% | |
| GCAAGTTCAACAATCTGGTG+TGG | - | tig0039543:6795-6814 | Msa1458370:CDS | 45.0% | |
| ! | TGGGCTGGAAATGTGGCTAT+GGG | - | tig0039543:6100-6119 | Msa1458370:CDS | 50.0% |
| GAACAAAACCCATCTGAGCC+AGG | - | tig0039543:6274-6293 | Msa1458370:CDS | 50.0% | |
| ACATGGCTTCTTAGCGCGTT+GGG | + | tig0039543:6385-6404 | Msa1458370:intergenic | 50.0% | |
| CACTCAAAACCGACACACCA+CGG | + | tig0039543:6471-6490 | Msa1458370:intergenic | 50.0% | |
| !!! | GTGGTGTGTCGGTTTTGAGT+GGG | - | tig0039543:6470-6489 | Msa1458370:CDS | 50.0% |
| ! | TTTTCTACCTCCGCCTTCTC+CGG | - | tig0039543:6591-6610 | Msa1458370:CDS | 50.0% |
| GTTAATCCAGTAGCTCCAGC+CGG | + | tig0039543:6613-6632 | Msa1458370:intergenic | 50.0% | |
| !! | GTTGTTGGTGGTTCTGTTGC+AGG | - | tig0039543:6661-6680 | Msa1458370:CDS | 50.0% |
| ! | TGGTTCTGTTGCAGGTCCTT+TGG | - | tig0039543:6669-6688 | Msa1458370:CDS | 50.0% |
| ACAGGTCCAGAAGCAACCAA+AGG | + | tig0039543:6688-6707 | Msa1458370:intergenic | 50.0% | |
| GGTTGCTTCTGGACCTGTTA+TGG | - | tig0039543:6690-6709 | Msa1458370:CDS | 50.0% | |
| CCCTTGGAAGATGAACAAGG+TGG | - | tig0039543:6754-6773 | Msa1458370:CDS | 50.0% | |
| ! | ACAAGGTGGTGGTGATCAAG+AGG | - | tig0039543:6768-6787 | Msa1458370:CDS | 50.0% |
| GGACCCCAAAACACATCATG+AGG | + | tig0039543:6961-6980 | Msa1458370:intergenic | 50.0% | |
| ! | TGGGCTGGAAATGTGGCTAT+GGG | - | tig0039543:6100-6119 | Msa1458370:CDS | 50.0% |
| GAACAAAACCCATCTGAGCC+AGG | - | tig0039543:6274-6293 | Msa1458370:CDS | 50.0% | |
| ACATGGCTTCTTAGCGCGTT+GGG | + | tig0039543:6385-6404 | Msa1458370:intergenic | 50.0% | |
| CACTCAAAACCGACACACCA+CGG | + | tig0039543:6471-6490 | Msa1458370:intergenic | 50.0% | |
| !!! | GTGGTGTGTCGGTTTTGAGT+GGG | - | tig0039543:6470-6489 | Msa1458370:CDS | 50.0% |
| ! | TTTTCTACCTCCGCCTTCTC+CGG | - | tig0039543:6591-6610 | Msa1458370:CDS | 50.0% |
| GTTAATCCAGTAGCTCCAGC+CGG | + | tig0039543:6613-6632 | Msa1458370:intergenic | 50.0% | |
| !! | GTTGTTGGTGGTTCTGTTGC+AGG | - | tig0039543:6661-6680 | Msa1458370:CDS | 50.0% |
| ! | TGGTTCTGTTGCAGGTCCTT+TGG | - | tig0039543:6669-6688 | Msa1458370:CDS | 50.0% |
| ACAGGTCCAGAAGCAACCAA+AGG | + | tig0039543:6688-6707 | Msa1458370:intergenic | 50.0% | |
| GGTTGCTTCTGGACCTGTTA+TGG | - | tig0039543:6690-6709 | Msa1458370:CDS | 50.0% | |
| CCCTTGGAAGATGAACAAGG+TGG | - | tig0039543:6754-6773 | Msa1458370:CDS | 50.0% | |
| ! | ACAAGGTGGTGGTGATCAAG+AGG | - | tig0039543:6768-6787 | Msa1458370:CDS | 50.0% |
| GGACCCCAAAACACATCATG+AGG | + | tig0039543:6961-6980 | Msa1458370:intergenic | 50.0% | |
| ! | ATGGCAAATCGTTGGTGGGC+TGG | - | tig0039543:6085-6104 | Msa1458370:CDS | 55.0% |
| !! | TCGTTGGTGGGCTGGAAATG+TGG | - | tig0039543:6093-6112 | Msa1458370:CDS | 55.0% |
| !! | GTGGGCTGGAAATGTGGCTA+TGG | - | tig0039543:6099-6118 | Msa1458370:CDS | 55.0% |
| CACTGCTACCTGGCTCAGAT+GGG | + | tig0039543:6285-6304 | Msa1458370:intergenic | 55.0% | |
| TAGCGCGTTGGGGGATTCTT+TGG | + | tig0039543:6374-6393 | Msa1458370:intergenic | 55.0% | |
| ATGGCTTCTTAGCGCGTTGG+GGG | + | tig0039543:6383-6402 | Msa1458370:intergenic | 55.0% | |
| CATGGCTTCTTAGCGCGTTG+GGG | + | tig0039543:6384-6403 | Msa1458370:intergenic | 55.0% | |
| GACATGGCTTCTTAGCGCGT+TGG | + | tig0039543:6386-6405 | Msa1458370:intergenic | 55.0% | |
| CGCGCTAAGAAGCCATGTCT+TGG | - | tig0039543:6387-6406 | Msa1458370:CDS | 55.0% | |
| ! | CAGCAGTGGTAGTGATGTGG+CGG | - | tig0039543:6414-6433 | Msa1458370:CDS | 55.0% |
| AAACCGACACACCACGGTGA+CGG | + | tig0039543:6465-6484 | Msa1458370:intergenic | 55.0% | |
| !!! | CGTGGTGTGTCGGTTTTGAG+TGG | - | tig0039543:6469-6488 | Msa1458370:CDS | 55.0% |
| !!! | GTGTCGGTTTTGAGTGGGAG+CGG | - | tig0039543:6475-6494 | Msa1458370:CDS | 55.0% |
| ATAACACCACCAGGAGCAGC+CGG | + | tig0039543:6529-6548 | Msa1458370:intergenic | 55.0% | |
| GCAGGTCCTTTGGTTGCTTC+TGG | - | tig0039543:6679-6698 | Msa1458370:CDS | 55.0% | |
| AAAGAAGGAGGAGGACGAGG+AGG | + | tig0039543:6988-7007 | Msa1458370:intergenic | 55.0% | |
| CAGAAAGAAGGAGGAGGACG+AGG | + | tig0039543:6991-7010 | Msa1458370:intergenic | 55.0% | |
| ! | ATGGCAAATCGTTGGTGGGC+TGG | - | tig0039543:6085-6104 | Msa1458370:CDS | 55.0% |
| !! | TCGTTGGTGGGCTGGAAATG+TGG | - | tig0039543:6093-6112 | Msa1458370:CDS | 55.0% |
| !! | GTGGGCTGGAAATGTGGCTA+TGG | - | tig0039543:6099-6118 | Msa1458370:CDS | 55.0% |
| CACTGCTACCTGGCTCAGAT+GGG | + | tig0039543:6285-6304 | Msa1458370:intergenic | 55.0% | |
| TAGCGCGTTGGGGGATTCTT+TGG | + | tig0039543:6374-6393 | Msa1458370:intergenic | 55.0% | |
| ATGGCTTCTTAGCGCGTTGG+GGG | + | tig0039543:6383-6402 | Msa1458370:intergenic | 55.0% | |
| CATGGCTTCTTAGCGCGTTG+GGG | + | tig0039543:6384-6403 | Msa1458370:intergenic | 55.0% | |
| GACATGGCTTCTTAGCGCGT+TGG | + | tig0039543:6386-6405 | Msa1458370:intergenic | 55.0% | |
| CGCGCTAAGAAGCCATGTCT+TGG | - | tig0039543:6387-6406 | Msa1458370:CDS | 55.0% | |
| ! | CAGCAGTGGTAGTGATGTGG+CGG | - | tig0039543:6414-6433 | Msa1458370:CDS | 55.0% |
| AAACCGACACACCACGGTGA+CGG | + | tig0039543:6465-6484 | Msa1458370:intergenic | 55.0% | |
| !!! | CGTGGTGTGTCGGTTTTGAG+TGG | - | tig0039543:6469-6488 | Msa1458370:CDS | 55.0% |
| !!! | GTGTCGGTTTTGAGTGGGAG+CGG | - | tig0039543:6475-6494 | Msa1458370:CDS | 55.0% |
| ATAACACCACCAGGAGCAGC+CGG | + | tig0039543:6529-6548 | Msa1458370:intergenic | 55.0% | |
| GCAGGTCCTTTGGTTGCTTC+TGG | - | tig0039543:6679-6698 | Msa1458370:CDS | 55.0% | |
| AAAGAAGGAGGAGGACGAGG+AGG | + | tig0039543:6988-7007 | Msa1458370:intergenic | 55.0% | |
| CAGAAAGAAGGAGGAGGACG+AGG | + | tig0039543:6991-7010 | Msa1458370:intergenic | 55.0% | |
| CCACTGCTACCTGGCTCAGA+TGG | + | tig0039543:6286-6305 | Msa1458370:intergenic | 60.0% | |
| CCATCTGAGCCAGGTAGCAG+TGG | - | tig0039543:6283-6302 | Msa1458370:CDS | 60.0% | |
| TCTGAGCCAGGTAGCAGTGG+TGG | - | tig0039543:6286-6305 | Msa1458370:CDS | 60.0% | |
| AGCCAGGTAGCAGTGGTGGT+CGG | - | tig0039543:6290-6309 | Msa1458370:CDS | 60.0% | |
| GTGACGGCGGTTAGCGAAGT+TGG | + | tig0039543:6449-6468 | Msa1458370:intergenic | 60.0% | |
| AGGAGCAGCCGGCTGTCTAA+GGG | + | tig0039543:6518-6537 | Msa1458370:intergenic | 60.0% | |
| TTTAGCTGGTGGTCAGGGGC+AGG | - | tig0039543:6639-6658 | Msa1458370:CDS | 60.0% | |
| CCACTGCTACCTGGCTCAGA+TGG | + | tig0039543:6286-6305 | Msa1458370:intergenic | 60.0% | |
| CCATCTGAGCCAGGTAGCAG+TGG | - | tig0039543:6283-6302 | Msa1458370:CDS | 60.0% | |
| TCTGAGCCAGGTAGCAGTGG+TGG | - | tig0039543:6286-6305 | Msa1458370:CDS | 60.0% | |
| AGCCAGGTAGCAGTGGTGGT+CGG | - | tig0039543:6290-6309 | Msa1458370:CDS | 60.0% | |
| GTGACGGCGGTTAGCGAAGT+TGG | + | tig0039543:6449-6468 | Msa1458370:intergenic | 60.0% | |
| AGGAGCAGCCGGCTGTCTAA+GGG | + | tig0039543:6518-6537 | Msa1458370:intergenic | 60.0% | |
| TTTAGCTGGTGGTCAGGGGC+AGG | - | tig0039543:6639-6658 | Msa1458370:CDS | 60.0% | |
| CTCCGACCACCACTGCTACC+TGG | + | tig0039543:6295-6314 | Msa1458370:intergenic | 65.0% | |
| CAGGTAGCAGTGGTGGTCGG+AGG | - | tig0039543:6293-6312 | Msa1458370:CDS | 65.0% | |
| GATCCTGGTGGTCTCCCACG+TGG | + | tig0039543:6319-6338 | Msa1458370:intergenic | 65.0% | |
| TTCGCTAACCGCCGTCACCG+TGG | - | tig0039543:6451-6470 | Msa1458370:CDS | 65.0% | |
| CAGGAGCAGCCGGCTGTCTA+AGG | + | tig0039543:6519-6538 | Msa1458370:intergenic | 65.0% | |
| CTTAGACAGCCGGCTGCTCC+TGG | - | tig0039543:6517-6536 | Msa1458370:CDS | 65.0% | |
| GTAGCTCCAGCCGGAGAAGG+CGG | + | tig0039543:6604-6623 | Msa1458370:intergenic | 65.0% | |
| CCAGTAGCTCCAGCCGGAGA+AGG | + | tig0039543:6607-6626 | Msa1458370:intergenic | 65.0% | |
| CCTTCTCCGGCTGGAGCTAC+TGG | - | tig0039543:6604-6623 | Msa1458370:CDS | 65.0% | |
| GGTGGTCAGGGGCAGGTTGT+TGG | - | tig0039543:6646-6665 | Msa1458370:CDS | 65.0% | |
| GGTCAGGGGCAGGTTGTTGG+TGG | - | tig0039543:6649-6668 | Msa1458370:CDS | 65.0% | |
| GAAGGAGGAGGACGAGGAGG+TGG | + | tig0039543:6985-7004 | Msa1458370:intergenic | 65.0% | |
| CTCCGACCACCACTGCTACC+TGG | + | tig0039543:6295-6314 | Msa1458370:intergenic | 65.0% | |
| CAGGTAGCAGTGGTGGTCGG+AGG | - | tig0039543:6293-6312 | Msa1458370:CDS | 65.0% | |
| GATCCTGGTGGTCTCCCACG+TGG | + | tig0039543:6319-6338 | Msa1458370:intergenic | 65.0% | |
| TTCGCTAACCGCCGTCACCG+TGG | - | tig0039543:6451-6470 | Msa1458370:CDS | 65.0% | |
| CAGGAGCAGCCGGCTGTCTA+AGG | + | tig0039543:6519-6538 | Msa1458370:intergenic | 65.0% | |
| CTTAGACAGCCGGCTGCTCC+TGG | - | tig0039543:6517-6536 | Msa1458370:CDS | 65.0% | |
| GTAGCTCCAGCCGGAGAAGG+CGG | + | tig0039543:6604-6623 | Msa1458370:intergenic | 65.0% | |
| CCAGTAGCTCCAGCCGGAGA+AGG | + | tig0039543:6607-6626 | Msa1458370:intergenic | 65.0% | |
| CCTTCTCCGGCTGGAGCTAC+TGG | - | tig0039543:6604-6623 | Msa1458370:CDS | 65.0% | |
| GGTGGTCAGGGGCAGGTTGT+TGG | - | tig0039543:6646-6665 | Msa1458370:CDS | 65.0% | |
| GGTCAGGGGCAGGTTGTTGG+TGG | - | tig0039543:6649-6668 | Msa1458370:CDS | 65.0% | |
| GAAGGAGGAGGACGAGGAGG+TGG | + | tig0039543:6985-7004 | Msa1458370:intergenic | 65.0% | |
| AGTGGTGGTCGGAGGCCACG+TGG | - | tig0039543:6301-6320 | Msa1458370:CDS | 70.0% | |
| GTGGTGGTCGGAGGCCACGT+GGG | - | tig0039543:6302-6321 | Msa1458370:CDS | 70.0% | |
| AGGCCACGTGGGAGACCACC+AGG | - | tig0039543:6313-6332 | Msa1458370:CDS | 70.0% | |
| ! | CCGACACACCACGGTGACGG+CGG | + | tig0039543:6462-6481 | Msa1458370:intergenic | 70.0% |
| CCGCCGTCACCGTGGTGTGT+CGG | - | tig0039543:6459-6478 | Msa1458370:CDS | 70.0% | |
| AGACAGCCGGCTGCTCCTGG+TGG | - | tig0039543:6520-6539 | Msa1458370:CDS | 70.0% | |
| CTACCTCCGCCTTCTCCGGC+TGG | - | tig0039543:6595-6614 | Msa1458370:CDS | 70.0% | |
| GGAGGAGGACGAGGAGGTGG+AGG | + | tig0039543:6982-7001 | Msa1458370:intergenic | 70.0% | |
| AGTGGTGGTCGGAGGCCACG+TGG | - | tig0039543:6301-6320 | Msa1458370:CDS | 70.0% | |
| GTGGTGGTCGGAGGCCACGT+GGG | - | tig0039543:6302-6321 | Msa1458370:CDS | 70.0% | |
| AGGCCACGTGGGAGACCACC+AGG | - | tig0039543:6313-6332 | Msa1458370:CDS | 70.0% | |
| ! | CCGACACACCACGGTGACGG+CGG | + | tig0039543:6462-6481 | Msa1458370:intergenic | 70.0% |
| CCGCCGTCACCGTGGTGTGT+CGG | - | tig0039543:6459-6478 | Msa1458370:CDS | 70.0% | |
| AGACAGCCGGCTGCTCCTGG+TGG | - | tig0039543:6520-6539 | Msa1458370:CDS | 70.0% | |
| CTACCTCCGCCTTCTCCGGC+TGG | - | tig0039543:6595-6614 | Msa1458370:CDS | 70.0% | |
| GGAGGAGGACGAGGAGGTGG+AGG | + | tig0039543:6982-7001 | Msa1458370:intergenic | 70.0% | |
| GCTCCAGCCGGAGAAGGCGG+AGG | + | tig0039543:6601-6620 | Msa1458370:intergenic | 75.0% | |
| GCTCCAGCCGGAGAAGGCGG+AGG | + | tig0039543:6601-6620 | Msa1458370:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0039543 | gene | 6085 | 7011 | 6085 | ID=Msa1458370;Name=Msa1458370 |
| tig0039543 | mRNA | 6085 | 7011 | 6085 | ID=Msa1458370-mRNA-1;Parent=Msa1458370;Name=Msa1458370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|308 |
| tig0039543 | exon | 6085 | 7011 | 6085 | ID=Msa1458370-mRNA-1:exon:21709;Parent=Msa1458370-mRNA-1 |
| tig0039543 | CDS | 6085 | 7011 | 6085 | ID=Msa1458370-mRNA-1:cds;Parent=Msa1458370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
