AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0117300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117300 MtrunA17_Chr1g0173891 75.806 124 1 1 147 241 1 124 4.53e-55 181
Msa0117300 MtrunA17_Chr1g0173881 85.593 118 17 0 1 118 1 118 6.99e-55 173
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0117300 AT3G57680.1 60.204 196 37 3 75 241 84 267 3.53e-72 229
Msa0117300 AT3G57680.3 55.085 118 24 1 153 241 1 118 1.34e-34 127
Msa0117300 AT3G57680.2 55.085 118 24 1 153 241 1 118 1.34e-34 127

Find 121 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAACAAACCTACCAAATT+TGG 0.155558 1_3:+37818507 None:intergenic
GAAGAGGAAGGTGTCGTTTA+AGG 0.189094 1_3:-37818442 Msa0117300:CDS
AGAAAGCATTCCACTGATTT+TGG 0.230739 1_3:+37816857 None:intergenic
TAATGCATGAATCTGCTTCT+AGG 0.234485 1_3:+37813139 None:intergenic
TGAAGAGAAGGAGGTGAATA+AGG 0.261653 1_3:-37818418 Msa0117300:CDS
TTCTTTACTTTGATTAATCT+TGG 0.277428 1_3:+37818594 None:intergenic
TAAAGTACCAAAACCAAATT+TGG 0.279525 1_3:-37818520 Msa0117300:CDS
AAACCTACCAAATTTGGTTT+TGG 0.289069 1_3:+37818513 None:intergenic
GATGAATTAGTTGAAATAAA+TGG 0.303515 1_3:-37815987 Msa0117300:intron
TGAGATTGAAGTCTTATCTT+TGG 0.310288 1_3:+37813164 None:intergenic
GTTTGTTTCCTCGTAGGTTA+TGG 0.324357 1_3:-37818494 Msa0117300:CDS
TGTGCAGGGGAGAGGCTTAA+TGG 0.330155 1_3:-37815820 Msa0117300:intron
TGAAGCATGGGGTTTGATTC+GGG 0.349053 1_3:-37817158 Msa0117300:CDS
TTGAAGCATGGGGTTTGATT+CGG 0.352478 1_3:-37817159 Msa0117300:CDS
AGAAGCAGATTCATGCATTA+TGG 0.353453 1_3:-37813136 Msa0117300:three_prime_UTR
TGACATGCGAAATGCTATTC+AGG 0.354095 1_3:-37814663 Msa0117300:three_prime_UTR
TCTGTTGTGCACTGCACGTC+TGG 0.362781 1_3:+37813216 None:intergenic
CTTGTGGGGAACAAAACATT+TGG 0.382361 1_3:-37813775 Msa0117300:three_prime_UTR
ACCTCAGGTGCGCGTGAAAC+GGG 0.383496 1_3:+37818267 None:intergenic
TCTTTGGTTGATAGTTCCTT+TGG 0.384951 1_3:+37813180 None:intergenic
TGTTCAAGAAACAGTCCCTT+TGG 0.389416 1_3:+37813083 None:intergenic
GGTGCAGCACAGAGGCTTAG+AGG 0.393697 1_3:-37815784 Msa0117300:CDS
TTTCAATATTGAAAGATGAA+TGG 0.402154 1_3:-37813034 Msa0117300:three_prime_UTR
CGTGATGCCCATGTTGTTGT+TGG 0.405184 1_3:+37818465 None:intergenic
AGTGTACGAGAGATTTCTTA+TGG 0.416109 1_3:-37815520 Msa0117300:three_prime_UTR
GGTGAATAAGGTAGTGGTAG+TGG 0.419882 1_3:-37818406 Msa0117300:CDS
GACCTCAGGTGCGCGTGAAA+CGG 0.420484 1_3:+37818266 None:intergenic
ATTTGGAAAAGGAAAGATTC+AGG 0.435352 1_3:-37813758 Msa0117300:intron
GTTGCTCAGATGTGGTTAGA+TGG 0.450686 1_3:-37814460 Msa0117300:three_prime_UTR
AAACATGTCACCCATCAATA+TGG 0.451593 1_3:-37814401 Msa0117300:three_prime_UTR
AACGGTCGAGCTATTCTTGT+GGG 0.458237 1_3:-37813790 Msa0117300:three_prime_UTR
GTCGTTTAAGGTTGAAGAGA+AGG 0.466163 1_3:-37818430 Msa0117300:CDS
TGAATACCGGCACGAGCAGC+TGG 0.467849 1_3:+37816017 None:intergenic
TGAGGATCTGTGTGGAATGA+TGG 0.470732 1_3:+37815181 None:intergenic
GTCATGTATATATAAAATAG+TGG 0.472977 1_3:-37812971 Msa0117300:three_prime_UTR
AATGCATGAATCTGCTTCTA+GGG 0.476986 1_3:+37813140 None:intergenic
GGGAACAAAACATTTGGAAA+AGG 0.480082 1_3:-37813769 Msa0117300:three_prime_UTR
AAGAACTCTTGTTGAAGCAT+GGG 0.485105 1_3:-37817170 Msa0117300:CDS
GGAATGATGGCACTTGATAT+TGG 0.490763 1_3:+37815194 None:intergenic
TTCATCTCCTTGATGAATAC+CGG 0.491367 1_3:+37816004 None:intergenic
AGTGGAATGCTTTCTACACT+TGG 0.497192 1_3:-37816849 Msa0117300:CDS
GAAGGAGGTGAATAAGGTAG+TGG 0.501122 1_3:-37818412 Msa0117300:CDS
GATCTGATTGTGCAGGGGAG+AGG 0.504370 1_3:-37815828 Msa0117300:intron
GAAATTGTCAACCTTCTCTC+AGG 0.507010 1_3:-37815129 Msa0117300:intron
GGACTTATAATTCTAGTGAA+AGG 0.507509 1_3:+37816822 None:intergenic
CAGAGGCTTAGAGGGAATGC+TGG 0.507723 1_3:-37815775 Msa0117300:CDS
AAAGAACTCTTGTTGAAGCA+TGG 0.512172 1_3:-37817171 Msa0117300:CDS
TCGACAGATCAAATAACAAA+AGG 0.512503 1_3:-37816966 Msa0117300:intron
TGAACATGAGTTGGATATGA+AGG 0.513377 1_3:-37813109 Msa0117300:three_prime_UTR
CGACCTGATCTATGTCATGA+AGG 0.514048 1_3:+37813247 None:intergenic
ATTGAAAACTTATCTTCTCT+AGG 0.514797 1_3:-37815423 Msa0117300:three_prime_UTR
TTCATGACATAGATCAGGTC+GGG 0.516139 1_3:-37813245 Msa0117300:three_prime_UTR
ATGGCCATTGACCATATTGA+TGG 0.517855 1_3:+37814390 None:intergenic
TCACCCATCAATATGGTCAA+TGG 0.520092 1_3:-37814394 Msa0117300:three_prime_UTR
GTGCAGCACAGAGGCTTAGA+GGG 0.523821 1_3:-37815783 Msa0117300:CDS
TGATCTATGTCATGAAGGGC+TGG 0.525259 1_3:+37813252 None:intergenic
AACAGTCCAGCTGCTCGTGC+CGG 0.526284 1_3:-37816023 Msa0117300:CDS
AAACGGGAAAAGCAACGGTA+AGG 0.529370 1_3:+37818283 None:intergenic
TATTGAATGATATATACAAT+CGG 0.529881 1_3:+37812946 None:intergenic
TATGGTAGCTGAACATGAGT+TGG 0.531686 1_3:-37813118 Msa0117300:three_prime_UTR
TCCCGTTTCACGCGCACCTG+AGG 0.532170 1_3:-37818268 Msa0117300:intron
CGCCCCAGCTAAAATCTCGC+TGG 0.533641 1_3:+37813822 None:intergenic
ACACAGATCCTCAGAAGGGC+AGG 0.537133 1_3:-37815171 Msa0117300:three_prime_UTR
AGCCCTTCATGACATAGATC+AGG 0.537489 1_3:-37813250 Msa0117300:three_prime_UTR
CAGGGTGGCTTGGTAAAAGC+AGG 0.540508 1_3:-37814490 Msa0117300:three_prime_UTR
GTACTCACAATTACTACAAG+TGG 0.543132 1_3:+37814352 None:intergenic
TGGTAGGTTTGTTTCCTCGT+AGG 0.548540 1_3:-37818500 Msa0117300:CDS
GTACCAAAACCAAATTTGGT+AGG 0.549119 1_3:-37818516 Msa0117300:CDS
ATACCTTGATGATTAAATGT+AGG 0.550456 1_3:+37817121 None:intergenic
GCCTTGATGTTGCTCAGATG+TGG 0.555679 1_3:-37814468 Msa0117300:three_prime_UTR
ACTCATACATACTTGATCTA+CGG 0.557022 1_3:-37814619 Msa0117300:three_prime_UTR
CACTAGAATTATAAGTCCAA+AGG 0.558964 1_3:-37816817 Msa0117300:intron
GTGAATACGATTGATAGAGA+TGG 0.558990 1_3:-37814424 Msa0117300:three_prime_UTR
GCTGGGGCGTTACACGATAA+CGG 0.562084 1_3:-37813808 Msa0117300:three_prime_UTR
GATCCTACATTTAATCATCA+AGG 0.565895 1_3:-37817124 Msa0117300:intron
CAACATGGGCATCACGGAAG+AGG 0.568371 1_3:-37818458 Msa0117300:CDS
GGTTACTACCAACAACAACA+TGG 0.570072 1_3:-37818473 Msa0117300:CDS
GAGAGCTTGATATACTCCCT+TGG 0.574347 1_3:+37815218 None:intergenic
TGGAACAACTGTTACAGTAA+AGG 0.574531 1_3:-37815755 Msa0117300:CDS
AGGGATTGAGAGAGAGCTGT+TGG 0.579896 1_3:+37818303 None:intergenic
GTTTAAGGTTGAAGAGAAGG+AGG 0.582306 1_3:-37818427 Msa0117300:CDS
CAACAACAACATGGGCATCA+CGG 0.583305 1_3:-37818464 Msa0117300:CDS
TCTTCTGCTCACCTGAGAGA+AGG 0.584131 1_3:+37815118 None:intergenic
AAAAGAAAACAATGTGTCGA+AGG 0.590676 1_3:+37815631 None:intergenic
TGGATATGAAGGATTCCAAA+GGG 0.591184 1_3:-37813098 Msa0117300:three_prime_UTR
AACGGGAAAAGCAACGGTAA+GGG 0.591378 1_3:+37818284 None:intergenic
GCTCGTGCCGGTATTCATCA+AGG 0.592072 1_3:-37816011 Msa0117300:CDS
AGAACTCTTGTTGAAGCATG+GGG 0.593442 1_3:-37817169 Msa0117300:CDS
TAATTTAGGTTAAATTACCA+AGG 0.597741 1_3:-37815235 Msa0117300:intron
GTGGATCATGTGTTATAGCA+TGG 0.598447 1_3:+37814371 None:intergenic
ATCAGCCCTCTTTGTTACAG+TGG 0.602610 1_3:-37813289 Msa0117300:three_prime_UTR
AATAAGGTAGTGGTAGTGGA+AGG 0.603341 1_3:-37818402 Msa0117300:CDS
ACCACATCTGAGCAACATCA+AGG 0.604021 1_3:+37814467 None:intergenic
GCTGCATCAGCTGAGTTCAA+AGG 0.605499 1_3:+37816885 None:intergenic
GACCTGATCTATGTCATGAA+GGG 0.610507 1_3:+37813248 None:intergenic
AATTTAGGTTAAATTACCAA+GGG 0.612832 1_3:-37815234 Msa0117300:intron
GAAGTTGCAGCAAACAATGG+TGG 0.613750 1_3:-37816916 Msa0117300:CDS
ATTCCACACAGATCCTCAGA+AGG 0.618716 1_3:-37815176 Msa0117300:three_prime_UTR
ATGGGCATCACGGAAGAGGA+AGG 0.625191 1_3:-37818454 Msa0117300:CDS
GTTAGATGGAGATGAGACTC+TGG 0.626212 1_3:-37814446 Msa0117300:three_prime_UTR
TTGGATATGAAGGATTCCAA+AGG 0.629055 1_3:-37813099 Msa0117300:three_prime_UTR
TATGAAGTTGCAGCAAACAA+TGG 0.629584 1_3:-37816919 Msa0117300:CDS
TAACGGTCGAGCTATTCTTG+TGG 0.632174 1_3:-37813791 Msa0117300:three_prime_UTR
CTTAATGGCATTGATAGTGA+AGG 0.632924 1_3:-37815805 Msa0117300:CDS
AGAAATGCTTAATTCGCCAA+AGG 0.634008 1_3:-37813196 Msa0117300:three_prime_UTR
TGCCCTTCTGAGGATCTGTG+TGG 0.639411 1_3:+37815173 None:intergenic
GCAGCCTACACCAAAATCAG+TGG 0.643480 1_3:-37816867 Msa0117300:CDS
CTTCATGACATAGATCAGGT+CGG 0.643951 1_3:-37813246 Msa0117300:three_prime_UTR
GTTACTACCAACAACAACAT+GGG 0.656333 1_3:-37818472 Msa0117300:CDS
GAAACTATGATATTTCACAA+TGG 0.661507 1_3:+37815731 None:intergenic
GCGTGAAACGGGAAAAGCAA+CGG 0.664518 1_3:+37818278 None:intergenic
TTTCCTCAACAGGTCAACGA+GGG 0.669643 1_3:-37813856 Msa0117300:intron
AGTGTCACTCAGCTTCACGA+TGG 0.672707 1_3:-37813312 Msa0117300:three_prime_UTR
TTCCACACAGATCCTCAGAA+GGG 0.677870 1_3:-37815175 Msa0117300:three_prime_UTR
TGGCCATTGACCATATTGAT+GGG 0.679797 1_3:+37814391 None:intergenic
GTTTCCTCAACAGGTCAACG+AGG 0.686788 1_3:-37813857 Msa0117300:intron
ACGGTCGAGCTATTCTTGTG+GGG 0.693767 1_3:-37813789 Msa0117300:three_prime_UTR
ATATTGAAAGATGAATGGAA+AGG 0.717489 1_3:-37813029 Msa0117300:three_prime_UTR
TAGAAACTCTTATATCCGTG+AGG 0.718823 1_3:-37815387 Msa0117300:intron
ATAGTGAAGGTGCAGCACAG+AGG 0.775625 1_3:-37815792 Msa0117300:CDS
GGTAGTAACCATAACCTACG+AGG 0.780903 1_3:+37818486 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATATATAATATATAA+AGG + chr1_3:37813471-37813490 None:intergenic 0.0%
!!! ATAACTTTTAAAAAAATGAA+AGG - chr1_3:37813541-37813560 Msa0117300:intron 10.0%
!!! TAACTTTTAAAAAAATGAAA+GGG - chr1_3:37813542-37813561 Msa0117300:intron 10.0%
!!! TTATTTTAATTGCTTTTTAT+TGG - chr1_3:37813982-37814001 Msa0117300:intron 10.0%
!!! ATTTTTTCTTTTAAAATTCT+TGG - chr1_3:37815286-37815305 Msa0117300:intron 10.0%
!! ATTTAACCTAAATTATATAT+TGG + chr1_3:37816210-37816229 None:intergenic 10.0%
!!! AATAAAAAAGTGTTAGAAAA+AGG - chr1_3:37813310-37813329 Msa0117300:three_prime_UTR 15.0%
!!! TATATAATATATAAAGGTAC+CGG + chr1_3:37813465-37813484 None:intergenic 15.0%
!!! ATGATTTTTCTTTTCTTTAT+GGG + chr1_3:37813913-37813932 None:intergenic 15.0%
!!! TATGATTTTTCTTTTCTTTA+TGG + chr1_3:37813914-37813933 None:intergenic 15.0%
!! TAAAGAAAAGAAAAATCATA+TGG - chr1_3:37813914-37813933 Msa0117300:intron 15.0%
!! AATTAAAATAATACCAACAT+GGG + chr1_3:37813973-37813992 None:intergenic 15.0%
!!! TTTTTGCATTATAATTCAAA+GGG - chr1_3:37814043-37814062 Msa0117300:intron 15.0%
!! ACTAAATAAAACTAAGAATT+TGG - chr1_3:37814070-37814089 Msa0117300:intron 15.0%
!! GCAATAATAATACTATATAT+TGG + chr1_3:37814750-37814769 None:intergenic 15.0%
!! TGTATCTTACTTTAATTATA+AGG - chr1_3:37814922-37814941 Msa0117300:intron 15.0%
!! GTATCTTACTTTAATTATAA+GGG - chr1_3:37814923-37814942 Msa0117300:intron 15.0%
!!! AATTAAAGTCTTATGTTTAA+CGG - chr1_3:37815022-37815041 Msa0117300:intron 15.0%
!!! AAAAAACTAATTTTAAAAGG+AGG + chr1_3:37815257-37815276 None:intergenic 15.0%
!!! TTGATTTCTGTTTTAAAATT+AGG - chr1_3:37815339-37815358 Msa0117300:intron 15.0%
!!! ATATTTTAGAATAACTAACT+TGG + chr1_3:37815495-37815514 None:intergenic 15.0%
!!! AATTTTCTTTTGTTTGAAAA+TGG - chr1_3:37815600-37815619 Msa0117300:three_prime_UTR 15.0%
!! ATATTAAGATAAAGTTTGTA+CGG + chr1_3:37816443-37816462 None:intergenic 15.0%
!! TACAAACTTTATCTTAATAT+CGG - chr1_3:37816443-37816462 Msa0117300:intron 15.0%
!! TAACTTATCAAAATATTGTA+TGG - chr1_3:37816596-37816615 Msa0117300:intron 15.0%
!!! CTTTATTTTATCTTTTGTTT+TGG - chr1_3:37816639-37816658 Msa0117300:intron 15.0%
!! ACATAAACATTTATATGATA+AGG - chr1_3:37816673-37816692 Msa0117300:intron 15.0%
!! AAATGAATGATAAAAAATTC+AGG + chr1_3:37817467-37817486 None:intergenic 15.0%
!! TATTGAATGATATATACAAT+CGG + chr1_3:37818507-37818526 None:intergenic 15.0%
!! TTCTTTACTTTGATTAATCT+TGG + chr1_3:37812859-37812878 None:intergenic 20.0%
!!! ATCTGAAATTCACATTTTTA+AGG - chr1_3:37813399-37813418 Msa0117300:intron 20.0%
!!! ATTTTTAAGGTTAACAAGTA+AGG - chr1_3:37813412-37813431 Msa0117300:intron 20.0%
!! ACATATGAAAAATCTCAAAA+GGG + chr1_3:37813631-37813650 None:intergenic 20.0%
!! CAATTAAAATAATACCAACA+TGG + chr1_3:37813974-37813993 None:intergenic 20.0%
!! CTTTGAATTATAATGCAAAA+AGG + chr1_3:37814044-37814063 None:intergenic 20.0%
!!! CTTTTTGCATTATAATTCAA+AGG - chr1_3:37814042-37814061 Msa0117300:intron 20.0%
!! AAAAAGTAGTAACTTAAGAT+AGG - chr1_3:37814715-37814734 Msa0117300:intron 20.0%
!! AATGTTAAAAGTCATATTTG+TGG - chr1_3:37814947-37814966 Msa0117300:intron 20.0%
!! TAAAAATATCTGAAAATCAC+AGG - chr1_3:37815384-37815403 Msa0117300:intron 20.0%
!! GATGAATTAGTTGAAATAAA+TGG - chr1_3:37815463-37815482 Msa0117300:three_prime_UTR 20.0%
!!! ATTACTATTTCATTTTCACA+AGG + chr1_3:37815583-37815602 None:intergenic 20.0%
!!! TTTCTTTTTCTTGGAATTAT+GGG - chr1_3:37815872-37815891 Msa0117300:intron 20.0%
!! AATTTACAATATTCCATTGA+TGG - chr1_3:37816183-37816202 Msa0117300:intron 20.0%
!!! TAATTTAGGTTAAATTACCA+AGG - chr1_3:37816215-37816234 Msa0117300:intron 20.0%
!!! AATTTAGGTTAAATTACCAA+GGG - chr1_3:37816216-37816235 Msa0117300:intron 20.0%
!! TATTAAGATAAAGTTTGTAC+GGG + chr1_3:37816442-37816461 None:intergenic 20.0%
!!! AACTGAAATTTTCATGAAAA+TGG + chr1_3:37816874-37816893 None:intergenic 20.0%
!!! AAAATTTCAGGTAAAAACAT+AGG + chr1_3:37816936-37816955 None:intergenic 20.0%
!! CATTATGTAACAAAAAATAC+TGG + chr1_3:37817720-37817739 None:intergenic 20.0%
!! TATTAAGCAATATTTCCAAA+AGG - chr1_3:37817775-37817794 Msa0117300:intron 20.0%
!!! TTTTTTCATGATTTTCCTTT+TGG + chr1_3:37817793-37817812 None:intergenic 20.0%
!! TTTCAATATTGAAAGATGAA+TGG - chr1_3:37818416-37818435 Msa0117300:CDS 20.0%
!! GTCATGTATATATAAAATAG+TGG - chr1_3:37818479-37818498 Msa0117300:CDS 20.0%
!!! TTGTCCTAATACAATATTTT+TGG - chr1_3:37818580-37818599 Msa0117300:exon 20.0%
!! TTCTCCAAAAATATTGTATT+AGG + chr1_3:37818587-37818606 None:intergenic 20.0%
!!! AAATTTGGTTTTGGTACTTT+AGG + chr1_3:37812931-37812950 None:intergenic 25.0%
!! TAAAGTACCAAAACCAAATT+TGG - chr1_3:37812930-37812949 Msa0117300:three_prime_UTR 25.0%
!!! AAAAAAGTGTTAGAAAAAGG+AGG - chr1_3:37813313-37813332 Msa0117300:three_prime_UTR 25.0%
!!! AAAAAGTGTTAGAAAAAGGA+GGG - chr1_3:37813314-37813333 Msa0117300:three_prime_UTR 25.0%
!!! CAATGGTAACTAATTTTAAC+TGG + chr1_3:37813352-37813371 None:intergenic 25.0%
! CAAAATTTAGATGTCAACAA+TGG + chr1_3:37813369-37813388 None:intergenic 25.0%
!!! TTTTTTTTCCTTAACTCAGT+TGG + chr1_3:37813497-37813516 None:intergenic 25.0%
! AAAAGGGATAATTCACAAAA+GGG + chr1_3:37813615-37813634 None:intergenic 25.0%
! GACATATGAAAAATCTCAAA+AGG + chr1_3:37813632-37813651 None:intergenic 25.0%
!! TTTTTCTTTTCTTTATGGGA+AGG + chr1_3:37813909-37813928 None:intergenic 25.0%
!!! AAAGGAGTACTACTTATTTT+GGG + chr1_3:37814026-37814045 None:intergenic 25.0%
!!! AAAAGGAGTACTACTTATTT+TGG + chr1_3:37814027-37814046 None:intergenic 25.0%
! TTAACAAACTCGAGTATTTA+TGG + chr1_3:37814188-37814207 None:intergenic 25.0%
!! ATACCTTGATGATTAAATGT+AGG + chr1_3:37814332-37814351 None:intergenic 25.0%
! ATGCATTCTATATGCAAATT+TGG + chr1_3:37814404-37814423 None:intergenic 25.0%
! AATGATATTTGTAAGACCTT+TGG + chr1_3:37814652-37814671 None:intergenic 25.0%
!! AGATCAACAAATCTGTTTTA+AGG - chr1_3:37814824-37814843 Msa0117300:intron 25.0%
!!! TGTTTTAAGGTCATGTTAAT+TGG - chr1_3:37814837-37814856 Msa0117300:intron 25.0%
! TTAAAAGTCATATTTGTGGT+TGG - chr1_3:37814951-37814970 Msa0117300:intron 25.0%
!!! AACTAATTTTAAAAGGAGGT+AGG + chr1_3:37815253-37815272 None:intergenic 25.0%
!! TTTAAAACAGAAATCAACAC+AGG + chr1_3:37815336-37815355 None:intergenic 25.0%
! GAAACTATGATATTTCACAA+TGG + chr1_3:37815722-37815741 None:intergenic 25.0%
!! AACTTTCAGTTTCTTTTTCT+TGG - chr1_3:37815863-37815882 Msa0117300:intron 25.0%
!! GTTTCTTTTTCTTGGAATTA+TGG - chr1_3:37815871-37815890 Msa0117300:intron 25.0%
!! TTCTTTTTCTTGGAATTATG+GGG - chr1_3:37815873-37815892 Msa0117300:intron 25.0%
!! ACCTTGACTACTTTAAAAAA+TGG - chr1_3:37815903-37815922 Msa0117300:intron 25.0%
!! CCTTGACTACTTTAAAAAAT+GGG - chr1_3:37815904-37815923 Msa0117300:intron 25.0%
! ATTGAAAACTTATCTTCTCT+AGG - chr1_3:37816027-37816046 Msa0117300:CDS 25.0%
!! AAATTTTCAACTTTACCTCA+CGG + chr1_3:37816081-37816100 None:intergenic 25.0%
!!! TTTTGAAGTTCAAACACAAA+GGG + chr1_3:37816165-37816184 None:intergenic 25.0%
!!! ATTTTGAAGTTCAAACACAA+AGG + chr1_3:37816166-37816185 None:intergenic 25.0%
! ATTATATATTGGACCATCAA+TGG + chr1_3:37816199-37816218 None:intergenic 25.0%
! GATGGTCCAATATATAATTT+AGG - chr1_3:37816201-37816220 Msa0117300:intron 25.0%
! ATTCAGGAAATGAAAAATCA+AGG - chr1_3:37816803-37816822 Msa0117300:intron 25.0%
! TCATGAAAATGGTAAATTAC+AGG + chr1_3:37816863-37816882 None:intergenic 25.0%
!! ATGAAAATTTCAGTTTTACC+AGG - chr1_3:37816879-37816898 Msa0117300:CDS 25.0%
! TGTTATTAACTAGCTATAGT+TGG + chr1_3:37817123-37817142 None:intergenic 25.0%
! TCATGTGGTACAAAATAAAA+AGG + chr1_3:37817155-37817174 None:intergenic 25.0%
! CAGTGAATGTTAAATTGATT+TGG - chr1_3:37817214-37817233 Msa0117300:intron 25.0%
! CAAGTGGATATTTATATGAA+AGG + chr1_3:37817360-37817379 None:intergenic 25.0%
! ATAGAAAATCAAGATGTGAA+AGG + chr1_3:37817520-37817539 None:intergenic 25.0%
! AAGGAAAATCATGAAAAAAG+AGG - chr1_3:37817794-37817813 Msa0117300:intron 25.0%
! GGTAATGTAATGTATATATG+AGG - chr1_3:37817815-37817834 Msa0117300:intron 25.0%
!!! AGAGTGTTTTCTTGTTTAAA+AGG - chr1_3:37817868-37817887 Msa0117300:intron 25.0%
! CATGTATTAGTATTGTGTTA+GGG + chr1_3:37817988-37818007 None:intergenic 25.0%
! ACATGTATTAGTATTGTGTT+AGG + chr1_3:37817989-37818008 None:intergenic 25.0%
! TAACACAATACTAATACATG+TGG - chr1_3:37817988-37818007 Msa0117300:intron 25.0%
! ATATTGAAAGATGAATGGAA+AGG - chr1_3:37818421-37818440 Msa0117300:CDS 25.0%
!! AAACCTACCAAATTTGGTTT+TGG + chr1_3:37812940-37812959 None:intergenic 30.0%
!!! GCAAAAAGTGCTTTTAGATT+TGG - chr1_3:37813084-37813103 Msa0117300:three_prime_UTR 30.0%
! AAAACTTGTTCAACATACAG+TGG + chr1_3:37813271-37813290 None:intergenic 30.0%
!!! CTAACACTTTTTTATTGCGT+GGG + chr1_3:37813306-37813325 None:intergenic 30.0%
!!! TCTAACACTTTTTTATTGCG+TGG + chr1_3:37813307-37813326 None:intergenic 30.0%
AACAAGTAAGGTAACAAGTA+AGG - chr1_3:37813424-37813443 Msa0117300:intron 30.0%
! TATTTCTACCAACTGAGTTA+AGG - chr1_3:37813486-37813505 Msa0117300:intron 30.0%
CAAAAGGGATAATTCACAAA+AGG + chr1_3:37813616-37813635 None:intergenic 30.0%
GTTACAATGCAAAATGTAAC+TGG + chr1_3:37814156-37814175 None:intergenic 30.0%
! GTTACATTTTGCATTGTAAC+TGG - chr1_3:37814156-37814175 Msa0117300:intron 30.0%
GATCCTACATTTAATCATCA+AGG - chr1_3:37814326-37814345 Msa0117300:intron 30.0%
TATGCAAATTTGGTACTTGA+AGG + chr1_3:37814394-37814413 None:intergenic 30.0%
TGCATCATACTAACATCTAT+TGG - chr1_3:37814419-37814438 Msa0117300:three_prime_UTR 30.0%
TCGACAGATCAAATAACAAA+AGG - chr1_3:37814484-37814503 Msa0117300:three_prime_UTR 30.0%
! TACACTTTTGCTTGTAGATT+GGG - chr1_3:37814507-37814526 Msa0117300:intron 30.0%
GGACTTATAATTCTAGTGAA+AGG + chr1_3:37814631-37814650 None:intergenic 30.0%
CACTAGAATTATAAGTCCAA+AGG - chr1_3:37814633-37814652 Msa0117300:three_prime_UTR 30.0%
!! CAGATTTGTTGATCTAAGAA+TGG + chr1_3:37814819-37814838 None:intergenic 30.0%
! GTAAGATACATTTGATGATC+CGG + chr1_3:37814912-37814931 None:intergenic 30.0%
! GAATATCAGGGATTTAGAAT+CGG - chr1_3:37815061-37815080 Msa0117300:intron 30.0%
AAAAGAAAACAATGTGTCGA+AGG + chr1_3:37815822-37815841 None:intergenic 30.0%
!!! CCCATTTTTTAAAGTAGTCA+AGG + chr1_3:37815907-37815926 None:intergenic 30.0%
AGATTCACCTATAGAAAAAC+TGG - chr1_3:37816352-37816371 Msa0117300:intron 30.0%
! TAGACATCCAGTTTTTCTAT+AGG + chr1_3:37816362-37816381 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG - chr1_3:37816477-37816496 Msa0117300:intron 30.0%
AACAAAGTTGTCTTTCCAAA+AGG - chr1_3:37816714-37816733 Msa0117300:intron 30.0%
ACAAAGTTGTCTTTCCAAAA+GGG - chr1_3:37816715-37816734 Msa0117300:intron 30.0%
TATGGTACAGGATAAGTTTA+TGG + chr1_3:37816742-37816761 None:intergenic 30.0%
AAACTTATCCTGTACCATAT+TGG - chr1_3:37816743-37816762 Msa0117300:intron 30.0%
ACTCATACATACTTGATCTA+CGG - chr1_3:37816831-37816850 Msa0117300:CDS 30.0%
! TTTACCTGAAATTTTGTTGC+AGG - chr1_3:37816941-37816960 Msa0117300:CDS 30.0%
! TTACCTGAAATTTTGTTGCA+GGG - chr1_3:37816942-37816961 Msa0117300:CDS 30.0%
AGGTAAGTAATGTCTAACTA+AGG + chr1_3:37817272-37817291 None:intergenic 30.0%
ATGACTAAAAGAAATGCAAG+TGG + chr1_3:37817376-37817395 None:intergenic 30.0%
ATTTGGAAAAGGAAAGATTC+AGG - chr1_3:37817692-37817711 Msa0117300:intron 30.0%
CTAATACATGTGGTTATTAC+TGG - chr1_3:37817998-37818017 Msa0117300:intron 30.0%
TAAGATTGACTGAAATGGAA+AGG + chr1_3:37818094-37818113 None:intergenic 30.0%
TTCCATTTCAGTCAATCTTA+TGG - chr1_3:37818094-37818113 Msa0117300:intron 30.0%
TTCCATAAGATTGACTGAAA+TGG + chr1_3:37818099-37818118 None:intergenic 30.0%
! TGAGATTGAAGTCTTATCTT+TGG + chr1_3:37818289-37818308 None:intergenic 30.0%
!!! TTTGGTTTTGGTACTTTAGG+TGG + chr1_3:37812928-37812947 None:intergenic 35.0%
GTACCAAAACCAAATTTGGT+AGG - chr1_3:37812934-37812953 Msa0117300:three_prime_UTR 35.0%
GGAAACAAACCTACCAAATT+TGG + chr1_3:37812946-37812965 None:intergenic 35.0%
GTTACTACCAACAACAACAT+GGG - chr1_3:37812978-37812997 Msa0117300:three_prime_UTR 35.0%
GAAAATGACAAAACCCATGT+TGG - chr1_3:37813957-37813976 Msa0117300:intron 35.0%
TAAGTGTGATAATACTCGCA+GGG - chr1_3:37814124-37814143 Msa0117300:intron 35.0%
CAAACTCGAGTATTTATGGA+TGG + chr1_3:37814184-37814203 None:intergenic 35.0%
TGAACCATGCTTAGTTGAAA+AGG - chr1_3:37814231-37814250 Msa0117300:intron 35.0%
GAACCATGCTTAGTTGAAAA+GGG - chr1_3:37814232-37814251 Msa0117300:intron 35.0%
! AAACCCTTTTCAACTAAGCA+TGG + chr1_3:37814238-37814257 None:intergenic 35.0%
AAAGAACTCTTGTTGAAGCA+TGG - chr1_3:37814279-37814298 Msa0117300:intron 35.0%
AAGAACTCTTGTTGAAGCAT+GGG - chr1_3:37814280-37814299 Msa0117300:intron 35.0%
! GTACACTTTTGCTTGTAGAT+TGG - chr1_3:37814506-37814525 Msa0117300:intron 35.0%
TATGAAGTTGCAGCAAACAA+TGG - chr1_3:37814531-37814550 Msa0117300:intron 35.0%
!!! AGAAAGCATTCCACTGATTT+TGG + chr1_3:37814596-37814615 None:intergenic 35.0%
TCTCACTTACTTTCGTTTCT+TGG - chr1_3:37814685-37814704 Msa0117300:intron 35.0%
!! TGTCAGCAACACTTTAGAAT+AGG + chr1_3:37814772-37814791 None:intergenic 35.0%
TTCGTACTTACAGGAATATC+AGG - chr1_3:37815048-37815067 Msa0117300:intron 35.0%
TCGTACTTACAGGAATATCA+GGG - chr1_3:37815049-37815068 Msa0117300:intron 35.0%
TTGGCTCAACATTTATGAAG+AGG + chr1_3:37815114-37815133 None:intergenic 35.0%
ATAAATGTTGAGCCAAGAAC+AGG - chr1_3:37815118-37815137 Msa0117300:intron 35.0%
TTCATCTCCTTGATGAATAC+CGG + chr1_3:37815449-37815468 None:intergenic 35.0%
AAAATGGATCTGATTGTGCA+GGG - chr1_3:37815616-37815635 Msa0117300:three_prime_UTR 35.0%
!! CTTAATGGCATTGATAGTGA+AGG - chr1_3:37815645-37815664 Msa0117300:three_prime_UTR 35.0%
TGGAACAACTGTTACAGTAA+AGG - chr1_3:37815695-37815714 Msa0117300:three_prime_UTR 35.0%
AGTGTACGAGAGATTTCTTA+TGG - chr1_3:37815930-37815949 Msa0117300:intron 35.0%
TAGAAACTCTTATATCCGTG+AGG - chr1_3:37816063-37816082 Msa0117300:intron 35.0%
TTAGAGATCAAAACGATAGC+TGG + chr1_3:37816413-37816432 None:intergenic 35.0%
!! CTTGTTTTCGTAAGCTTTCT+AGG - chr1_3:37816572-37816591 Msa0117300:intron 35.0%
! GATAAGTTTATGGACCCTTT+TGG + chr1_3:37816732-37816751 None:intergenic 35.0%
GTCAATAACCAATATGGTAC+AGG + chr1_3:37816754-37816773 None:intergenic 35.0%
CACTCTGTCAATAACCAATA+TGG + chr1_3:37816760-37816779 None:intergenic 35.0%
! TTTCAGTTTTACCAGGTCTT+TGG - chr1_3:37816886-37816905 Msa0117300:CDS 35.0%
GTGAATACGATTGATAGAGA+TGG - chr1_3:37817026-37817045 Msa0117300:intron 35.0%
AAACATGTCACCCATCAATA+TGG - chr1_3:37817049-37817068 Msa0117300:intron 35.0%
GTACTCACAATTACTACAAG+TGG + chr1_3:37817101-37817120 None:intergenic 35.0%
ACTAAGGATTGTTCTAGTCA+GGG + chr1_3:37817256-37817275 None:intergenic 35.0%
AACTAAGGATTGTTCTAGTC+AGG + chr1_3:37817257-37817276 None:intergenic 35.0%
!! GCAATTTTTGTTTCCTCAAC+AGG - chr1_3:37817584-37817603 Msa0117300:intron 35.0%
GGGAACAAAACATTTGGAAA+AGG - chr1_3:37817681-37817700 Msa0117300:intron 35.0%
ACGAAAACAGACATGAACAA+TGG + chr1_3:37818052-37818071 None:intergenic 35.0%
! ATGTCTGTTTTCGTGCTTAT+GGG - chr1_3:37818058-37818077 Msa0117300:intron 35.0%
! TTTTGCCACTGTAACAAAGA+GGG + chr1_3:37818169-37818188 None:intergenic 35.0%
! ATTTTGCCACTGTAACAAAG+AGG + chr1_3:37818170-37818189 None:intergenic 35.0%
AGAAATGCTTAATTCGCCAA+AGG - chr1_3:37818254-37818273 Msa0117300:intron 35.0%
!! TCTTTGGTTGATAGTTCCTT+TGG + chr1_3:37818273-37818292 None:intergenic 35.0%
AATGCATGAATCTGCTTCTA+GGG + chr1_3:37818313-37818332 None:intergenic 35.0%
TAATGCATGAATCTGCTTCT+AGG + chr1_3:37818314-37818333 None:intergenic 35.0%
AGAAGCAGATTCATGCATTA+TGG - chr1_3:37818314-37818333 Msa0117300:CDS 35.0%
! TGAACATGAGTTGGATATGA+AGG - chr1_3:37818341-37818360 Msa0117300:CDS 35.0%
TTGGATATGAAGGATTCCAA+AGG - chr1_3:37818351-37818370 Msa0117300:CDS 35.0%
TGGATATGAAGGATTCCAAA+GGG - chr1_3:37818352-37818371 Msa0117300:CDS 35.0%
GTTTGTTTCCTCGTAGGTTA+TGG - chr1_3:37812956-37812975 Msa0117300:three_prime_UTR 40.0%
GGTTACTACCAACAACAACA+TGG - chr1_3:37812977-37812996 Msa0117300:three_prime_UTR 40.0%
! GTCGTTTAAGGTTGAAGAGA+AGG - chr1_3:37813020-37813039 Msa0117300:three_prime_UTR 40.0%
! GTTTAAGGTTGAAGAGAAGG+AGG - chr1_3:37813023-37813042 Msa0117300:three_prime_UTR 40.0%
TGAAGAGAAGGAGGTGAATA+AGG - chr1_3:37813032-37813051 Msa0117300:three_prime_UTR 40.0%
!! AATAAGGTAGTGGTAGTGGA+AGG - chr1_3:37813048-37813067 Msa0117300:three_prime_UTR 40.0%
! AAGGTAACAAGTAAGGTGTC+TGG - chr1_3:37813431-37813450 Msa0117300:intron 40.0%
! AGGTAACAAGTAAGGTGTCT+GGG - chr1_3:37813432-37813451 Msa0117300:intron 40.0%
CTAAGTGTGATAATACTCGC+AGG - chr1_3:37814123-37814142 Msa0117300:intron 40.0%
!! GTTGAAAAGGGTTTGTTGCT+AGG - chr1_3:37814244-37814263 Msa0117300:intron 40.0%
AGAACTCTTGTTGAAGCATG+GGG - chr1_3:37814281-37814300 Msa0117300:intron 40.0%
TTGAAGCATGGGGTTTGATT+CGG - chr1_3:37814291-37814310 Msa0117300:intron 40.0%
!!! CATTCCACTGATTTTGGTGT+AGG + chr1_3:37814590-37814609 None:intergenic 40.0%
AGTGGAATGCTTTCTACACT+TGG - chr1_3:37814601-37814620 Msa0117300:intron 40.0%
TAACGGTGATTCGTACTTAC+AGG - chr1_3:37815039-37815058 Msa0117300:intron 40.0%
! GGATTTAGAATCGGAAGTGA+TGG - chr1_3:37815070-37815089 Msa0117300:intron 40.0%
GAAAATGGATCTGATTGTGC+AGG - chr1_3:37815615-37815634 Msa0117300:three_prime_UTR 40.0%
AAATGGATCTGATTGTGCAG+GGG - chr1_3:37815617-37815636 Msa0117300:three_prime_UTR 40.0%
GGAATGATGGCACTTGATAT+TGG + chr1_3:37816259-37816278 None:intergenic 40.0%
GAAATTGTCAACCTTCTCTC+AGG - chr1_3:37816321-37816340 Msa0117300:intron 40.0%
CGACTGTATGATAGAACTTG+TGG - chr1_3:37816514-37816533 Msa0117300:intron 40.0%
TGACATGCGAAATGCTATTC+AGG - chr1_3:37816787-37816806 Msa0117300:intron 40.0%
! GTTTTACCAGGTCTTTGGAT+TGG - chr1_3:37816891-37816910 Msa0117300:CDS 40.0%
TCACCCATCAATATGGTCAA+TGG - chr1_3:37817056-37817075 Msa0117300:intron 40.0%
TGGCCATTGACCATATTGAT+GGG + chr1_3:37817062-37817081 None:intergenic 40.0%
ATGGCCATTGACCATATTGA+TGG + chr1_3:37817063-37817082 None:intergenic 40.0%
GTGGATCATGTGTTATAGCA+TGG + chr1_3:37817082-37817101 None:intergenic 40.0%
CACATGATCCACAAGTGATT+GGG - chr1_3:37817168-37817187 Msa0117300:CDS 40.0%
TAATAATCCCATGTTCGGTC+AGG + chr1_3:37817295-37817314 None:intergenic 40.0%
TGACCGAACATGGGATTATT+AGG - chr1_3:37817294-37817313 Msa0117300:intron 40.0%
GACCGAACATGGGATTATTA+GGG - chr1_3:37817295-37817314 Msa0117300:intron 40.0%
AGCCCTAATAATCCCATGTT+CGG + chr1_3:37817300-37817319 None:intergenic 40.0%
ATCTACTACACCTGTTTCGA+GGG + chr1_3:37817329-37817348 None:intergenic 40.0%
TATCTACTACACCTGTTTCG+AGG + chr1_3:37817330-37817349 None:intergenic 40.0%
! TAACATAGAGGCATGGTCTA+GGG + chr1_3:37817411-37817430 None:intergenic 40.0%
GATTCACCTTGCTAACATAG+AGG + chr1_3:37817423-37817442 None:intergenic 40.0%
TAAACCGCTAGTTCGATGAA+TGG - chr1_3:37817562-37817581 Msa0117300:intron 40.0%
ATTGCCATTCATCGAACTAG+CGG + chr1_3:37817569-37817588 None:intergenic 40.0%
CTTGTGGGGAACAAAACATT+TGG - chr1_3:37817675-37817694 Msa0117300:intron 40.0%
! GCACTGATACATGTTAGTGT+CGG + chr1_3:37817961-37817980 None:intergenic 40.0%
! CATGTCTGTTTTCGTGCTTA+TGG - chr1_3:37818057-37818076 Msa0117300:intron 40.0%
TTTCGTGCTTATGGGTTTCA+AGG - chr1_3:37818066-37818085 Msa0117300:intron 40.0%
GACCTGATCTATGTCATGAA+GGG + chr1_3:37818205-37818224 None:intergenic 40.0%
CTTCATGACATAGATCAGGT+CGG - chr1_3:37818204-37818223 Msa0117300:intron 40.0%
TTCATGACATAGATCAGGTC+GGG - chr1_3:37818205-37818224 Msa0117300:intron 40.0%
TATGGTAGCTGAACATGAGT+TGG - chr1_3:37818332-37818351 Msa0117300:CDS 40.0%
TGTTCAAGAAACAGTCCCTT+TGG + chr1_3:37818370-37818389 None:intergenic 40.0%
! TGGTAGGTTTGTTTCCTCGT+AGG - chr1_3:37812950-37812969 Msa0117300:three_prime_UTR 45.0%
GGTAGTAACCATAACCTACG+AGG + chr1_3:37812967-37812986 None:intergenic 45.0%
CAACAACAACATGGGCATCA+CGG - chr1_3:37812986-37813005 Msa0117300:three_prime_UTR 45.0%
!! GAAGAGGAAGGTGTCGTTTA+AGG - chr1_3:37813008-37813027 Msa0117300:three_prime_UTR 45.0%
GAAGGAGGTGAATAAGGTAG+TGG - chr1_3:37813038-37813057 Msa0117300:three_prime_UTR 45.0%
! GGTGAATAAGGTAGTGGTAG+TGG - chr1_3:37813044-37813063 Msa0117300:three_prime_UTR 45.0%
AACGGGAAAAGCAACGGTAA+GGG + chr1_3:37813169-37813188 None:intergenic 45.0%
AAACGGGAAAAGCAACGGTA+AGG + chr1_3:37813170-37813189 None:intergenic 45.0%
! GGTAACAAGTAAGGTGTCTG+GGG - chr1_3:37813433-37813452 Msa0117300:intron 45.0%
TGTGATAATACTCGCAGGGA+CGG - chr1_3:37814128-37814147 Msa0117300:intron 45.0%
TGAAGCATGGGGTTTGATTC+GGG - chr1_3:37814292-37814311 Msa0117300:intron 45.0%
GAAGTTGCAGCAAACAATGG+TGG - chr1_3:37814534-37814553 Msa0117300:intron 45.0%
CTGCCAATGACTATAATCGC+CGG - chr1_3:37814890-37814909 Msa0117300:intron 45.0%
GATCCGGCGATTATAGTCAT+TGG + chr1_3:37814896-37814915 None:intergenic 45.0%
! GGAAGTGATGGAAACTTGCA+GGG - chr1_3:37815082-37815101 Msa0117300:intron 45.0%
TGAGCCAAGAACAGGACATT+TGG - chr1_3:37815126-37815145 Msa0117300:intron 45.0%
CTGACCAAATGTCCTGTTCT+TGG + chr1_3:37815133-37815152 None:intergenic 45.0%
! TCTTGGTAGCAGCTAGAACT+CGG - chr1_3:37815303-37815322 Msa0117300:intron 45.0%
GAGAGCTTGATATACTCCCT+TGG + chr1_3:37816235-37816254 None:intergenic 45.0%
TGAGGATCTGTGTGGAATGA+TGG + chr1_3:37816272-37816291 None:intergenic 45.0%
ATTCCACACAGATCCTCAGA+AGG - chr1_3:37816274-37816293 Msa0117300:intron 45.0%
TTCCACACAGATCCTCAGAA+GGG - chr1_3:37816275-37816294 Msa0117300:intron 45.0%
! TTTTATGACCTGCCCTTCTG+AGG + chr1_3:37816290-37816309 None:intergenic 45.0%
GAAGGGCAGGTCATAAAAAC+TGG - chr1_3:37816292-37816311 Msa0117300:intron 45.0%
GTTACACCAATCCAAAGACC+TGG + chr1_3:37816900-37816919 None:intergenic 45.0%
CCACCCTGCAACAAAATTTC+AGG + chr1_3:37816948-37816967 None:intergenic 45.0%
! CCTGAAATTTTGTTGCAGGG+TGG - chr1_3:37816945-37816964 Msa0117300:CDS 45.0%
! AATTTTGTTGCAGGGTGGCT+TGG - chr1_3:37816950-37816969 Msa0117300:CDS 45.0%
ACCACATCTGAGCAACATCA+AGG + chr1_3:37816986-37817005 None:intergenic 45.0%
GTTGCTCAGATGTGGTTAGA+TGG - chr1_3:37816990-37817009 Msa0117300:intron 45.0%
GTTAGATGGAGATGAGACTC+TGG - chr1_3:37817004-37817023 Msa0117300:intron 45.0%
CCAATCACTTGTGGATCATG+TGG + chr1_3:37817170-37817189 None:intergenic 45.0%
CCACATGATCCACAAGTGAT+TGG - chr1_3:37817167-37817186 Msa0117300:CDS 45.0%
TCTAGTCAGGGTCTAGACAT+TGG + chr1_3:37817244-37817263 None:intergenic 45.0%
! CTAACATAGAGGCATGGTCT+AGG + chr1_3:37817412-37817431 None:intergenic 45.0%
ACCATGCCTCTATGTTAGCA+AGG - chr1_3:37817414-37817433 Msa0117300:intron 45.0%
ACCTTGCTAACATAGAGGCA+TGG + chr1_3:37817418-37817437 None:intergenic 45.0%
TTTCCTCAACAGGTCAACGA+GGG - chr1_3:37817594-37817613 Msa0117300:intron 45.0%
TAACGGTCGAGCTATTCTTG+TGG - chr1_3:37817659-37817678 Msa0117300:intron 45.0%
AACGGTCGAGCTATTCTTGT+GGG - chr1_3:37817660-37817679 Msa0117300:intron 45.0%
ACTCTCATGTAAGACTCGCT+TGG + chr1_3:37817853-37817872 None:intergenic 45.0%
GCGTGTACCAAGCATATTGA+CGG - chr1_3:37817890-37817909 Msa0117300:intron 45.0%
GTACCAAGCATATTGACGGT+AGG - chr1_3:37817894-37817913 Msa0117300:intron 45.0%
ACACCTACCGTCAATATGCT+TGG + chr1_3:37817900-37817919 None:intergenic 45.0%
! ATGCCTTCAATCTGAGGTGT+TGG + chr1_3:37817929-37817948 None:intergenic 45.0%
ATCAGCCCTCTTTGTTACAG+TGG - chr1_3:37818161-37818180 Msa0117300:intron 45.0%
TGATCTATGTCATGAAGGGC+TGG + chr1_3:37818201-37818220 None:intergenic 45.0%
AGCCCTTCATGACATAGATC+AGG - chr1_3:37818200-37818219 Msa0117300:intron 45.0%
CGACCTGATCTATGTCATGA+AGG + chr1_3:37818206-37818225 None:intergenic 45.0%
!!! AAAAAAAAACTAATTTTAAA+AGG + chr1_3:37815260-37815279 None:intergenic 5.0%
CGTGATGCCCATGTTGTTGT+TGG + chr1_3:37812988-37813007 None:intergenic 50.0%
AGGGATTGAGAGAGAGCTGT+TGG + chr1_3:37813150-37813169 None:intergenic 50.0%
GCGTGAAACGGGAAAAGCAA+CGG + chr1_3:37813175-37813194 None:intergenic 50.0%
! AAGGTGTCTGGGGTTTGAAC+CGG - chr1_3:37813443-37813462 Msa0117300:intron 50.0%
GCTGCATCAGCTGAGTTCAA+AGG + chr1_3:37814568-37814587 None:intergenic 50.0%
GCAGCCTACACCAAAATCAG+TGG - chr1_3:37814583-37814602 Msa0117300:intron 50.0%
! CGGAAGTGATGGAAACTTGC+AGG - chr1_3:37815081-37815100 Msa0117300:intron 50.0%
GATGGAAACTTGCAGGGAGT+TGG - chr1_3:37815088-37815107 Msa0117300:intron 50.0%
! ATAGTGAAGGTGCAGCACAG+AGG - chr1_3:37815658-37815677 Msa0117300:three_prime_UTR 50.0%
TCTTCTGCTCACCTGAGAGA+AGG + chr1_3:37816335-37816354 None:intergenic 50.0%
GCCTTGATGTTGCTCAGATG+TGG - chr1_3:37816982-37817001 Msa0117300:intron 50.0%
TTGAGCGACCCAATCACTTG+TGG + chr1_3:37817179-37817198 None:intergenic 50.0%
AAGTGATTGGGTCGCTCAAG+TGG - chr1_3:37817180-37817199 Msa0117300:CDS 50.0%
ACTTACCTCCTGACCGAACA+TGG - chr1_3:37817284-37817303 Msa0117300:intron 50.0%
CTTACCTCCTGACCGAACAT+GGG - chr1_3:37817285-37817304 Msa0117300:intron 50.0%
TAATCCCATGTTCGGTCAGG+AGG + chr1_3:37817292-37817311 None:intergenic 50.0%
! GGCTCATTTTCCCTCGAAAC+AGG - chr1_3:37817316-37817335 Msa0117300:intron 50.0%
GTTTCCTCAACAGGTCAACG+AGG - chr1_3:37817593-37817612 Msa0117300:intron 50.0%
!! AGTGCCAGCGAGATTTTAGC+TGG - chr1_3:37817624-37817643 Msa0117300:intron 50.0%
!!! GTGCCAGCGAGATTTTAGCT+GGG - chr1_3:37817625-37817644 Msa0117300:intron 50.0%
!!! TGCCAGCGAGATTTTAGCTG+GGG - chr1_3:37817626-37817645 Msa0117300:intron 50.0%
ACGGTCGAGCTATTCTTGTG+GGG - chr1_3:37817661-37817680 Msa0117300:intron 50.0%
GCTCCAACACCTCAGATTGA+AGG - chr1_3:37817923-37817942 Msa0117300:intron 50.0%
CCAGACATGCCTTCAATCTG+AGG + chr1_3:37817935-37817954 None:intergenic 50.0%
! CCTCAGATTGAAGGCATGTC+TGG - chr1_3:37817932-37817951 Msa0117300:intron 50.0%
GCACACTGACAAAGACACAC+TGG + chr1_3:37818026-37818045 None:intergenic 50.0%
! AGTGTCACTCAGCTTCACGA+TGG - chr1_3:37818138-37818157 Msa0117300:intron 50.0%
CAACATGGGCATCACGGAAG+AGG - chr1_3:37812992-37813011 Msa0117300:three_prime_UTR 55.0%
ATGGGCATCACGGAAGAGGA+AGG - chr1_3:37812996-37813015 Msa0117300:three_prime_UTR 55.0%
! GCTCGTGCCGGTATTCATCA+AGG - chr1_3:37815439-37815458 Msa0117300:three_prime_UTR 55.0%
GATCTGATTGTGCAGGGGAG+AGG - chr1_3:37815622-37815641 Msa0117300:three_prime_UTR 55.0%
TGTGCAGGGGAGAGGCTTAA+TGG - chr1_3:37815630-37815649 Msa0117300:three_prime_UTR 55.0%
GTGCAGCACAGAGGCTTAGA+GGG - chr1_3:37815667-37815686 Msa0117300:three_prime_UTR 55.0%
CAGAGGCTTAGAGGGAATGC+TGG - chr1_3:37815675-37815694 Msa0117300:three_prime_UTR 55.0%
! TGCCCTTCTGAGGATCTGTG+TGG + chr1_3:37816280-37816299 None:intergenic 55.0%
ACACAGATCCTCAGAAGGGC+AGG - chr1_3:37816279-37816298 Msa0117300:intron 55.0%
!! CAGGGTGGCTTGGTAAAAGC+AGG - chr1_3:37816960-37816979 Msa0117300:CDS 55.0%
CTTCCCTCGTTGACCTGTTG+AGG + chr1_3:37817600-37817619 None:intergenic 55.0%
! GCTGGGGCGTTACACGATAA+CGG - chr1_3:37817642-37817661 Msa0117300:intron 55.0%
TCTGTTGTGCACTGCACGTC+TGG + chr1_3:37818237-37818256 None:intergenic 55.0%
ACCTCAGGTGCGCGTGAAAC+GGG + chr1_3:37813186-37813205 None:intergenic 60.0%
GACCTCAGGTGCGCGTGAAA+CGG + chr1_3:37813187-37813206 None:intergenic 60.0%
GAGAGAGACGAGCTGACCTC+AGG + chr1_3:37813201-37813220 None:intergenic 60.0%
AACAGTCCAGCTGCTCGTGC+CGG - chr1_3:37815427-37815446 Msa0117300:three_prime_UTR 60.0%
TGAATACCGGCACGAGCAGC+TGG + chr1_3:37815436-37815455 None:intergenic 60.0%
GGTGCAGCACAGAGGCTTAG+AGG - chr1_3:37815666-37815685 Msa0117300:three_prime_UTR 60.0%
CGCCCCAGCTAAAATCTCGC+TGG + chr1_3:37817631-37817650 None:intergenic 60.0%
TCCCGTTTCACGCGCACCTG+AGG - chr1_3:37813182-37813201 Msa0117300:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 37812843 37818629 37812843 ID=Msa0117300;Name=Msa0117300
chr1_3 mRNA 37812843 37818629 37812843 ID=Msa0117300-mRNA-1;Parent=Msa0117300;Name=Msa0117300-mRNA-1;_AED=0.22;_eAED=0.22;_QI=46|0.77|0.9|1|0.88|0.9|10|1304|246
chr1_3 exon 37812843 37813334 37812843 ID=Msa0117300-mRNA-1:exon:11950;Parent=Msa0117300-mRNA-1
chr1_3 exon 37813759 37813866 37813759 ID=Msa0117300-mRNA-1:exon:11949;Parent=Msa0117300-mRNA-1
chr1_3 exon 37814360 37814509 37814360 ID=Msa0117300-mRNA-1:exon:11948;Parent=Msa0117300-mRNA-1
chr1_3 exon 37814610 37814696 37814610 ID=Msa0117300-mRNA-1:exon:11947;Parent=Msa0117300-mRNA-1
chr1_3 exon 37815130 37815249 37815130 ID=Msa0117300-mRNA-1:exon:11946;Parent=Msa0117300-mRNA-1
chr1_3 exon 37815388 37815835 37815388 ID=Msa0117300-mRNA-1:exon:11945;Parent=Msa0117300-mRNA-1
chr1_3 exon 37815988 37816066 37815988 ID=Msa0117300-mRNA-1:exon:11944;Parent=Msa0117300-mRNA-1
chr1_3 exon 37816818 37816981 37816818 ID=Msa0117300-mRNA-1:exon:11943;Parent=Msa0117300-mRNA-1
chr1_3 exon 37817125 37817206 37817125 ID=Msa0117300-mRNA-1:exon:11942;Parent=Msa0117300-mRNA-1
chr1_3 exon 37818269 37818629 37818269 ID=Msa0117300-mRNA-1:exon:11941;Parent=Msa0117300-mRNA-1
chr1_3 five_prime_UTR 37818584 37818629 37818584 ID=Msa0117300-mRNA-1:five_prime_utr;Parent=Msa0117300-mRNA-1
chr1_3 CDS 37818269 37818583 37818269 ID=Msa0117300-mRNA-1:cds;Parent=Msa0117300-mRNA-1
chr1_3 CDS 37817125 37817206 37817125 ID=Msa0117300-mRNA-1:cds;Parent=Msa0117300-mRNA-1
chr1_3 CDS 37816818 37816981 37816818 ID=Msa0117300-mRNA-1:cds;Parent=Msa0117300-mRNA-1
chr1_3 CDS 37815988 37816066 37815988 ID=Msa0117300-mRNA-1:cds;Parent=Msa0117300-mRNA-1
chr1_3 CDS 37815735 37815835 37815735 ID=Msa0117300-mRNA-1:cds;Parent=Msa0117300-mRNA-1
chr1_3 three_prime_UTR 37815388 37815734 37815388 ID=Msa0117300-mRNA-1:three_prime_utr;Parent=Msa0117300-mRNA-1
chr1_3 three_prime_UTR 37815130 37815249 37815130 ID=Msa0117300-mRNA-1:three_prime_utr;Parent=Msa0117300-mRNA-1
chr1_3 three_prime_UTR 37814610 37814696 37814610 ID=Msa0117300-mRNA-1:three_prime_utr;Parent=Msa0117300-mRNA-1
chr1_3 three_prime_UTR 37814360 37814509 37814360 ID=Msa0117300-mRNA-1:three_prime_utr;Parent=Msa0117300-mRNA-1
chr1_3 three_prime_UTR 37813759 37813866 37813759 ID=Msa0117300-mRNA-1:three_prime_utr;Parent=Msa0117300-mRNA-1
chr1_3 three_prime_UTR 37812843 37813334 37812843 ID=Msa0117300-mRNA-1:three_prime_utr;Parent=Msa0117300-mRNA-1
Gene Sequence

>Msa0117300

ATGATGAACTTTGATGTTAAAGCAAGAATAAATATTCCACCTAAAGTACCAAAACCAAATTTGGTAGGTTTGTTTCCTCGTAGGTTATGGTTACTACCAACAACAACATGGGCATCACGGAAGAGGAAGGTGTCGTTTAAGGTTGAAGAGAAGGAGGTGAATAAGGTAGTGGTAGTGGAAGGAATTGAATCAGTTGCAAAAAGTGCTTTTAGATTTGGCTTTTCAGCAGCTCTTTCTTTCTGTATTTTCTGTCATGCACCAACAGCTCTCTCTCAATCCCTTACCGTTGCTTTTCCCGTTTCACGCGCACCTGAGGTGAATGCAGTTCAAAGAACTCTTGTTGAAGCATGGGGTTTGATTCGGGAAACATTTGTCGATCCTACATTTAATCATCAAGATCAAATAACAAAAGGTACACTTTTGCTTGTAGATTGGGATATGAAGTTGCAGCAAACAATGGTGGAAATGTTTCCTTTGAACTCAGCTGATGCAGCCTACACCAAAATCAGTGGAATGCTTTCTACACTTGGAGATCCTTTCACTAGAATTATAAGTCCAAAGGTTGTTTTGTCATGCATAGAAAACAGTCCAGCTGCTCGTGCCGGTATTCATCAAGGAGATGAATTAGTTGAAATAAATGGGGAGAGGCTTAATGGCATTGATAGTGAAGGTGCAGCACAGAGGCTTAGAGGGAATGCTGGAACAACTGTTACAGTAAAGGTCCATTGTGAAATATCATAG

Protein sequence

>Msa0117300

MMNFDVKARINIPPKVPKPNLVGLFPRRLWLLPTTTWASRKRKVSFKVEEKEVNKVVVVEGIESVAKSAFRFGFSAALSFCIFCHAPTALSQSLTVAFPVSRAPEVNAVQRTLVEAWGLIRETFVDPTFNHQDQITKGTLLLVDWDMKLQQTMVEMFPLNSADAAYTKISGMLSTLGDPFTRIISPKVVLSCIENSPAARAGIHQGDELVEINGERLNGIDSEGAAQRLRGNAGTTVTVKVHCEIS*