AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560370 MtrunA17_Chr4g0050421 94.493 345 4 3 1 330 1 345 0.0 665
Msa0560370 MtrunA17_Chr5g0430001 64.793 338 96 4 1 330 1 323 8.06e-157 441
Msa0560370 MtrunA17_Chr5g0430011 66.026 312 87 4 29 330 22 324 1.52e-149 423
Msa0560370 MtrunA17_Chr5g0409121 66.667 279 83 2 62 330 52 330 4.61e-144 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560370 AT5G64210.1 76.786 280 53 3 61 330 76 353 4.84e-159 449
Msa0560370 AT3G22370.1 66.000 300 82 3 48 330 58 354 2.10e-149 424
Msa0560370 AT3G22360.1 66.192 281 87 1 58 330 45 325 1.52e-142 406
Msa0560370 AT3G27620.1 68.441 263 75 1 76 330 67 329 6.53e-140 399
Msa0560370 AT1G32350.1 61.565 294 104 2 45 330 26 318 2.97e-137 392
Msa0560370 AT1G32350.2 61.091 275 98 2 45 311 26 299 1.02e-125 362

Find 114 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTATGACATCTTTCAATT+TGG 0.225219 4_1:-59675107 None:intergenic
TTCTGGATAAAGTCGCTTAC+AGG 0.257073 4_1:+59673801 Msa0560370:CDS
AGCTCCTCTTGGTTATCATT+AGG 0.258014 4_1:+59676770 Msa0560370:CDS
ACGTGGCTGTGTCGAGTTAT+TGG 0.263916 4_1:+59673539 Msa0560370:CDS
ATCTTTCAATTTGGCATCCT+TGG 0.265673 4_1:-59675098 None:intergenic
AACTTTGACGGTTAGAATTC+CGG 0.295362 4_1:-59673318 None:intergenic
GATAAGATCTGGAACATAAC+TGG 0.298266 4_1:+59677079 Msa0560370:three_prime_UTR
GCTCCTCTTGGTTATCATTA+GGG 0.299342 4_1:+59676771 Msa0560370:CDS
CGTGGCTGTGTCGAGTTATT+GGG 0.326708 4_1:+59673540 Msa0560370:CDS
ATTCTGTATGATCAAAATAT+TGG 0.347173 4_1:-59676891 None:intergenic
TTATGCTTTGATCATATGTT+TGG 0.364593 4_1:+59676916 Msa0560370:three_prime_UTR
AGAAATCTCTCATACCATTT+CGG 0.379638 4_1:-59674878 None:intergenic
CAAGTTCTACCATAGTCATT+AGG 0.381374 4_1:-59674850 None:intergenic
GAGAAGAAGGAGGAGAGTTC+CGG 0.382377 4_1:+59673505 Msa0560370:CDS
GATCAATGGAAACGTTTGAT+TGG 0.383106 4_1:-59673751 None:intergenic
ATCAAAATATTGGTGCTTAT+AGG 0.384018 4_1:-59676881 None:intergenic
AGCATCCCTCCAACCATTCC+AGG 0.387944 4_1:-59674740 None:intergenic
CTGCCATTGCAATAGACTAT+TGG 0.388788 4_1:+59675068 Msa0560370:CDS
AGGATGGAACAGAGTGGCCT+TGG 0.398321 4_1:+59673590 Msa0560370:CDS
AATGTATAGCTTCTTCTTCA+AGG 0.401405 4_1:-59674988 None:intergenic
CTCTACACCGATGGCGGAAA+CGG 0.401855 4_1:+59673388 Msa0560370:CDS
GAAATGGTATGAGAGATTTC+TGG 0.411468 4_1:+59674880 Msa0560370:CDS
TCACAACCGCCGAACTTTGA+CGG 0.414769 4_1:-59673330 None:intergenic
ATTTCTGGTCCTTGCTGTAC+AGG 0.415292 4_1:+59674895 Msa0560370:CDS
ACTGTTCTCTTGATAAGATC+TGG 0.421302 4_1:+59677068 Msa0560370:three_prime_UTR
TTCCTACACTGAGTATTTGA+AGG 0.429843 4_1:+59675009 Msa0560370:CDS
TCATTCGCGGCGGCGGAAAT+CGG 0.438546 4_1:+59673355 Msa0560370:CDS
GAAACAGTTGCAGCTGTCCC+TGG 0.444443 4_1:+59674722 Msa0560370:CDS
TCTTTCAATTTGGCATCCTT+GGG 0.445531 4_1:-59675097 None:intergenic
CGCTGATGAGGCTCACCATC+GGG 0.449836 4_1:+59675138 Msa0560370:CDS
AGCCACGTTATTCTTTGTTC+CGG 0.453617 4_1:-59673524 None:intergenic
CCATCCTCTCTCATAATCTT+CGG 0.453617 4_1:-59673574 None:intergenic
AAGGTGGCTCATAGAGTTGT+TGG 0.454036 4_1:+59674962 Msa0560370:intron
ATGATGCTTATTCAGATCAA+TGG 0.454262 4_1:-59673765 None:intergenic
GCCTCCGTCTCTTCCGCTGA+TGG 0.455263 4_1:-59673463 None:intergenic
GTGGCCTTGGAACTGCTTCA+TGG 0.462385 4_1:+59673603 Msa0560370:CDS
GAGGATGCACCTAATGACTA+TGG 0.466754 4_1:+59674841 Msa0560370:CDS
GAATTCTAACCGTCAAAGTT+CGG 0.475373 4_1:+59673321 Msa0560370:CDS
ATTTCAGCATAGTGGTGGTT+GGG 0.477652 4_1:+59674787 Msa0560370:CDS
TTTCAAAATTAATGAACTGT+GGG 0.483872 4_1:-59677122 None:intergenic
GCAGTTCTTTACCGTGGAAG+TGG 0.484800 4_1:-59676737 None:intergenic
TAGAACTTGTGAAGCCGAAA+TGG 0.485630 4_1:+59674864 Msa0560370:CDS
TGTGAGGTCATTCGCGGCGG+CGG 0.486795 4_1:+59673348 Msa0560370:CDS
GAACCCTCCGTTTCCGCCAT+CGG 0.488386 4_1:-59673395 None:intergenic
CCATTGCAATAGACTATTGG+AGG 0.495126 4_1:+59675071 Msa0560370:CDS
ACTTTATCCAGAAAATTCTT+CGG 0.501906 4_1:-59673791 None:intergenic
AATTTCAGCATAGTGGTGGT+TGG 0.511730 4_1:+59674786 Msa0560370:CDS
GCTGTCCCTGGAATGGTTGG+AGG 0.515427 4_1:+59674734 Msa0560370:CDS
TCTATTGCAATGGCAGGAGC+AGG 0.517572 4_1:-59675061 None:intergenic
CGGGACGCACCAGCTCCTCT+TGG 0.517676 4_1:+59676759 Msa0560370:CDS
CAATAGTCTATTGCAATGGC+AGG 0.522929 4_1:-59675067 None:intergenic
GTGGCTCGCCGAGCTTTGAT+CGG 0.523118 4_1:+59673292 Msa0560370:CDS
GCCGAGCTTTGATCGGTGGC+CGG 0.523135 4_1:+59673299 Msa0560370:CDS
GTGGCTGTGTCGAGTTATTG+GGG 0.525071 4_1:+59673541 Msa0560370:CDS
GGCGGTTGTGAGGTCATTCG+CGG 0.528832 4_1:+59673342 Msa0560370:CDS
GACGGAGAAGAACGAGAAGA+AGG 0.529053 4_1:+59673492 Msa0560370:CDS
TTTCTGGTCCTTGCTGTACA+GGG 0.533630 4_1:+59674896 Msa0560370:CDS
TAATGATAACCAAGAGGAGC+TGG 0.534076 4_1:-59676768 None:intergenic
GCATCCCTTAAAATAGAAAG+AGG 0.534522 4_1:+59676849 Msa0560370:three_prime_UTR
CCGAAGATTATGAGAGAGGA+TGG 0.536815 4_1:+59673574 Msa0560370:CDS
CTGGAACATAACTGGGTGAA+GGG 0.542432 4_1:+59677087 Msa0560370:three_prime_UTR
AGGTGGCTCATAGAGTTGTT+GGG 0.545630 4_1:+59674963 Msa0560370:intron
TCCGGCCACCGATCAAAGCT+CGG 0.550176 4_1:-59673300 None:intergenic
AACAGTCATTCGCGCTGATG+AGG 0.563488 4_1:+59675126 Msa0560370:CDS
CTTCCACGGTAAAGAACTGC+GGG 0.566723 4_1:+59676740 Msa0560370:CDS
GGTTTCGTAATGCAAACTAA+AGG 0.570417 4_1:-59676821 None:intergenic
GCAGCTGTCCCTGGAATGGT+TGG 0.572427 4_1:+59674731 Msa0560370:CDS
TTGAAGAAGCAGAGAATGAG+AGG 0.575067 4_1:+59674822 Msa0560370:CDS
CATCGGTGTAGAGATGCCTC+TGG 0.581421 4_1:-59673378 None:intergenic
TACACCGATGGCGGAAACGG+AGG 0.582046 4_1:+59673391 Msa0560370:CDS
ATAAGATCTGGAACATAACT+GGG 0.582846 4_1:+59677080 Msa0560370:three_prime_UTR
ACACCGATGGCGGAAACGGA+GGG 0.583559 4_1:+59673392 Msa0560370:CDS
TCTTCCGCTGATGGCTTCGA+CGG 0.586594 4_1:-59673454 None:intergenic
GCCATCAGCGGAAGAGACGG+AGG 0.587726 4_1:+59673462 Msa0560370:CDS
TATTTGAAGGACATTGATAG+TGG 0.587742 4_1:+59675022 Msa0560370:CDS
GAAGCCATCAGCGGAAGAGA+CGG 0.589166 4_1:+59673459 Msa0560370:CDS
GCGCTGATGAGGCTCACCAT+CGG 0.590135 4_1:+59675137 Msa0560370:CDS
CGAAAATTTCAGCATAGTGG+TGG 0.590958 4_1:+59674782 Msa0560370:CDS
CTGTTTCGAGCATCATTGCA+CGG 0.591594 4_1:-59674706 None:intergenic
GTCAAAGTTCGGCGGTTGTG+AGG 0.592006 4_1:+59673332 Msa0560370:CDS
CTGTCCCTGGAATGGTTGGA+GGG 0.593126 4_1:+59674735 Msa0560370:CDS
CTCCGAAAATTTCAGCATAG+TGG 0.594257 4_1:+59674779 Msa0560370:CDS
TCTGGAACATAACTGGGTGA+AGG 0.594436 4_1:+59677086 Msa0560370:three_prime_UTR
CGGCGGCGGAAATCGGCCAG+AGG 0.595135 4_1:+59673362 Msa0560370:CDS
TTCAAAATTAATGAACTGTG+GGG 0.596562 4_1:-59677121 None:intergenic
TTTGATTGGTAAGTCTCCCA+TGG 0.599243 4_1:-59673737 None:intergenic
ATGCAGGATATCCACTTCCA+CGG 0.604624 4_1:+59676726 Msa0560370:intron
CAGAGGCATCTCTACACCGA+TGG 0.605541 4_1:+59673379 Msa0560370:CDS
AGAGACGGAGGCGAAATCGA+CGG 0.606512 4_1:+59673474 Msa0560370:CDS
GAGGCCGAAGATTATGAGAG+AGG 0.612635 4_1:+59673570 Msa0560370:CDS
TGCGCCGTCGAAGCCATCAG+CGG 0.613702 4_1:+59673450 Msa0560370:CDS
ATTACCATGAAGCAGTTCCA+AGG 0.616674 4_1:-59673607 None:intergenic
GGAGAAGAACGAGAAGAAGG+AGG 0.617945 4_1:+59673495 Msa0560370:CDS
TGGAACATAACTGGGTGAAG+GGG 0.619345 4_1:+59677088 Msa0560370:three_prime_UTR
GCTCGCCGAGCTTTGATCGG+TGG 0.625356 4_1:+59673295 Msa0560370:CDS
AGTTGCAGCTGTCCCTGGAA+TGG 0.626357 4_1:+59674727 Msa0560370:CDS
AGACTATTGGAGGCTTCCCA+AGG 0.628882 4_1:+59675081 Msa0560370:CDS
AGGCATCTCTACACCGATGG+CGG 0.635399 4_1:+59673382 Msa0560370:CDS
GCATCCCTCCAACCATTCCA+GGG 0.636143 4_1:-59674739 None:intergenic
GAACACTCACTGAAGCGAAG+TGG 0.637444 4_1:-59675168 None:intergenic
GTCCTTCAAATACTCAGTGT+AGG 0.637701 4_1:-59675011 None:intergenic
CGTCCCGCAGTTCTTTACCG+TGG 0.639191 4_1:-59676743 None:intergenic
TGTAACTCTCACATTAAACA+TGG 0.640366 4_1:-59677040 None:intergenic
CCTCCAATAGTCTATTGCAA+TGG 0.640373 4_1:-59675071 None:intergenic
GCATTCAGCATTGTGTTACG+TGG 0.641705 4_1:+59673273 Msa0560370:CDS
TTCTAACCGTCAAAGTTCGG+CGG 0.651224 4_1:+59673324 Msa0560370:CDS
CGAAGTGGTTCACATCCCGA+TGG 0.653019 4_1:-59675153 None:intergenic
AGAAAACTCCCTGTACAGCA+AGG 0.655553 4_1:-59674904 None:intergenic
AAGCCCTAATGATAACCAAG+AGG 0.665170 4_1:-59676774 None:intergenic
TGGCTGTGTCGAGTTATTGG+GGG 0.669092 4_1:+59673542 Msa0560370:CDS
ACTTCCACGGTAAAGAACTG+CGG 0.706975 4_1:+59676739 Msa0560370:CDS
GGTTGTGAGGTCATTCGCGG+CGG 0.720769 4_1:+59673345 Msa0560370:CDS
TTCCGGAACAAAGAATAACG+TGG 0.734895 4_1:+59673522 Msa0560370:CDS
TGAGAGAGGATGGAACAGAG+TGG 0.750950 4_1:+59673584 Msa0560370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG - chr4_1:59674432-59674451 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr4_1:59674433-59674452 None:intergenic 0.0%
!! TATATATATATATATATAGG+GGG + chr4_1:59674164-59674183 Msa0560370:intron 10.0%
!! ATATATATATATATATATGG+GGG - chr4_1:59674430-59674449 None:intergenic 10.0%
!!! ATTATTTATTTTTTTATTCC+TGG + chr4_1:59674509-59674528 Msa0560370:intron 10.0%
!! TTACAAAAAAATAGTATAAA+CGG - chr4_1:59676962-59676981 None:intergenic 10.0%
!! TTGTTTATAATAGAAAAACA+TGG + chr4_1:59674328-59674347 Msa0560370:intron 15.0%
!! TGTTTATAATAGAAAAACAT+GGG + chr4_1:59674329-59674348 Msa0560370:intron 15.0%
!! TATCATCTTACATTTATTTA+CGG + chr4_1:59675249-59675268 Msa0560370:intron 15.0%
!!! TCATAGTTGTTTTAAAATAA+AGG + chr4_1:59676577-59676596 Msa0560370:intron 15.0%
!!! TTTCTTTTTTATAATAATGC+TGG + chr4_1:59676650-59676669 Msa0560370:intron 15.0%
!!! TTTGCTATATATGAATGAAA+GGG + chr4_1:59674097-59674116 Msa0560370:intron 20.0%
!! TAAAGTTTAATAGAGACAAA+AGG - chr4_1:59674266-59674285 None:intergenic 20.0%
!! ATAAATGTAAGATGATATGT+TGG - chr4_1:59675246-59675265 None:intergenic 20.0%
!! ACATGAAAACTGTAAAATTT+AGG + chr4_1:59675358-59675377 Msa0560370:intron 20.0%
!!! AAAACTGTAAAATTTAGGAT+TGG + chr4_1:59675363-59675382 Msa0560370:intron 20.0%
!!! TAAAATTTAGGATTGGTATA+AGG + chr4_1:59675370-59675389 Msa0560370:intron 20.0%
!! TAAGTAAAGCTTCATTATTT+GGG - chr4_1:59675609-59675628 None:intergenic 20.0%
!! ATAAGTAAAGCTTCATTATT+TGG - chr4_1:59675610-59675629 None:intergenic 20.0%
!!! TTTACTTATATCCAACTTTT+AGG + chr4_1:59675621-59675640 Msa0560370:intron 20.0%
!!! TTACTTATATCCAACTTTTA+GGG + chr4_1:59675622-59675641 Msa0560370:intron 20.0%
!!! AATTATTTTAAGAGATGTTG+TGG + chr4_1:59676128-59676147 Msa0560370:intron 20.0%
!! GGAATTGTATTATAAAAACA+GGG - chr4_1:59676698-59676717 None:intergenic 20.0%
!!! TTATCCTCTTTCTATTTTAA+GGG - chr4_1:59676856-59676875 None:intergenic 20.0%
!!! TTTATCCTCTTTCTATTTTA+AGG - chr4_1:59676857-59676876 None:intergenic 20.0%
!! ATTCTGTATGATCAAAATAT+TGG - chr4_1:59676894-59676913 None:intergenic 20.0%
!!! TTAAACATGGTTTTCAAATT+AGG - chr4_1:59677030-59677049 None:intergenic 20.0%
!! TTTCAAAATTAATGAACTGT+GGG - chr4_1:59677125-59677144 None:intergenic 20.0%
!!! TTTTCAAAATTAATGAACTG+TGG - chr4_1:59677126-59677145 None:intergenic 20.0%
!!! CAGTTCATTAATTTTGAAAA+AGG + chr4_1:59677126-59677145 Msa0560370:three_prime_UTR 20.0%
!!! ATTGTTTTTTCGCTAATTCA+TGG + chr4_1:59673662-59673681 Msa0560370:intron 25.0%
! TAATTCATGGTTTCTATAAG+TGG + chr4_1:59673675-59673694 Msa0560370:intron 25.0%
! ACTTTATCCAGAAAATTCTT+CGG - chr4_1:59673794-59673813 None:intergenic 25.0%
!! TTTGTTATGGATCATACAAT+AGG - chr4_1:59673905-59673924 None:intergenic 25.0%
!! TCTTCTCTTTTCTTTTGTTA+TGG - chr4_1:59673918-59673937 None:intergenic 25.0%
!!! GTTTGCTATATATGAATGAA+AGG + chr4_1:59674096-59674115 Msa0560370:intron 25.0%
! TTTATGTGCTCTTAAGAAAT+TGG + chr4_1:59674127-59674146 Msa0560370:intron 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG - chr4_1:59674242-59674261 None:intergenic 25.0%
!!! TGTTTTGGTAAATAACTAGT+AGG + chr4_1:59674352-59674371 Msa0560370:intron 25.0%
!!! TTTTGTTATGATGTTCTTCA+TGG + chr4_1:59674624-59674643 Msa0560370:intron 25.0%
! TGTTATGACATCTTTCAATT+TGG - chr4_1:59675110-59675129 None:intergenic 25.0%
! AACTTGTGATCTCAATATAT+TGG + chr4_1:59675311-59675330 Msa0560370:intron 25.0%
! GTATAAGGTAATATACACAA+AGG + chr4_1:59675385-59675404 Msa0560370:intron 25.0%
!!! GTAAGAAATTTTAACCACTT+GGG + chr4_1:59675647-59675666 Msa0560370:intron 25.0%
! ATTCCAAATAACAATGCAAA+AGG + chr4_1:59675803-59675822 Msa0560370:intron 25.0%
!! TGTAGTGCTTAATTATGTTT+TGG + chr4_1:59676194-59676213 Msa0560370:intron 25.0%
! AAAAAAAATTGTAACCACCT+TGG + chr4_1:59676440-59676459 Msa0560370:intron 25.0%
! AGAACTTAGTTTAAAGAAAG+TGG + chr4_1:59676550-59676569 Msa0560370:intron 25.0%
! CGGAATTGTATTATAAAAAC+AGG - chr4_1:59676699-59676718 None:intergenic 25.0%
!! ATCAAAATATTGGTGCTTAT+AGG - chr4_1:59676884-59676903 None:intergenic 25.0%
! TTATGCTTTGATCATATGTT+TGG + chr4_1:59676916-59676935 Msa0560370:three_prime_UTR 25.0%
! TTCAAAATTAATGAACTGTG+GGG - chr4_1:59677124-59677143 None:intergenic 25.0%
ATGATGCTTATTCAGATCAA+TGG - chr4_1:59673768-59673787 None:intergenic 30.0%
ACCTTAAAAAACACATCAGT+GGG - chr4_1:59673848-59673867 None:intergenic 30.0%
! ATAGAAAAACATGGGTGTTT+TGG + chr4_1:59674337-59674356 Msa0560370:intron 30.0%
TATCAATGATGCATATTTCC+AGG - chr4_1:59674530-59674549 None:intergenic 30.0%
CATACTATACTAGATATTGC+AGG + chr4_1:59674589-59674608 Msa0560370:intron 30.0%
! AACGTCTCTGAAAATATTCA+TGG - chr4_1:59674679-59674698 None:intergenic 30.0%
! GAATATTTTCAGAGACGTTA+TGG + chr4_1:59674680-59674699 Msa0560370:intron 30.0%
AGAAATCTCTCATACCATTT+CGG - chr4_1:59674881-59674900 None:intergenic 30.0%
AATGTATAGCTTCTTCTTCA+AGG - chr4_1:59674991-59675010 None:intergenic 30.0%
TATTTGAAGGACATTGATAG+TGG + chr4_1:59675022-59675041 Msa0560370:CDS 30.0%
TGTTGCTATACACTTTACAA+AGG + chr4_1:59675493-59675512 Msa0560370:intron 30.0%
GTTGCTATACACTTTACAAA+GGG + chr4_1:59675494-59675513 Msa0560370:intron 30.0%
! AGAAGTATATGACTACCATA+AGG + chr4_1:59675521-59675540 Msa0560370:intron 30.0%
!! GGTAAGAAATTTTAACCACT+TGG + chr4_1:59675646-59675665 Msa0560370:intron 30.0%
!! CATCCTTTTGCATTGTTATT+TGG - chr4_1:59675809-59675828 None:intergenic 30.0%
TTGTAATCTTAGGAAAGTAG+TGG + chr4_1:59676029-59676048 Msa0560370:intron 30.0%
TGTAATCTTAGGAAAGTAGT+GGG + chr4_1:59676030-59676049 Msa0560370:intron 30.0%
!! ATTTTAAGAGATGTTGTGGA+TGG + chr4_1:59676132-59676151 Msa0560370:intron 30.0%
!! TTTTAAGAGATGTTGTGGAT+GGG + chr4_1:59676133-59676152 Msa0560370:intron 30.0%
!! GAGTAGTTTCTGTTTTATTG+TGG + chr4_1:59676254-59676273 Msa0560370:intron 30.0%
ATAACATCACAATTCGATCT+TGG - chr4_1:59676287-59676306 None:intergenic 30.0%
!!! GTTATGCATTAGTTTTCGTT+TGG + chr4_1:59676302-59676321 Msa0560370:intron 30.0%
!! TATTGCAGTACACCTTATTT+TGG + chr4_1:59676328-59676347 Msa0560370:intron 30.0%
!!! ATTGCAGTACACCTTATTTT+GGG + chr4_1:59676329-59676348 Msa0560370:intron 30.0%
TAAGTATATGTCATCTTCCA+AGG - chr4_1:59676460-59676479 None:intergenic 30.0%
!!! GTGCTTTGATTTGTTCTTTT+AGG + chr4_1:59676497-59676516 Msa0560370:intron 30.0%
AGCATAAAACATAGCAATAC+TGG - chr4_1:59676529-59676548 None:intergenic 30.0%
TTTATAATAATGCTGGCCAT+TGG + chr4_1:59676657-59676676 Msa0560370:intron 30.0%
!! CTATTTTAAGGGATGCTTAT+AGG - chr4_1:59676845-59676864 None:intergenic 30.0%
! ACATGGTTTTCAAATTAGGT+GGG - chr4_1:59677026-59677045 None:intergenic 30.0%
! AACATGGTTTTCAAATTAGG+TGG - chr4_1:59677027-59677046 None:intergenic 30.0%
TGTAACTCTCACATTAAACA+TGG - chr4_1:59677043-59677062 None:intergenic 30.0%
! ATAAGATCTGGAACATAACT+GGG + chr4_1:59677080-59677099 Msa0560370:three_prime_UTR 30.0%
AACTTTGACGGTTAGAATTC+CGG - chr4_1:59673321-59673340 None:intergenic 35.0%
GAATTCTAACCGTCAAAGTT+CGG + chr4_1:59673321-59673340 Msa0560370:CDS 35.0%
GATCAATGGAAACGTTTGAT+TGG - chr4_1:59673754-59673773 None:intergenic 35.0%
CCTTAAAAAACACATCAGTG+GGG - chr4_1:59673847-59673866 None:intergenic 35.0%
CACCTTAAAAAACACATCAG+TGG - chr4_1:59673849-59673868 None:intergenic 35.0%
!!! GATGTGTTTTTTAAGGTGTG+TGG + chr4_1:59673851-59673870 Msa0560370:intron 35.0%
TTGAATGCAATCACATGTGT+CGG - chr4_1:59673984-59674003 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG - chr4_1:59674387-59674406 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG + chr4_1:59674387-59674406 Msa0560370:intron 35.0%
! CACCACTATGCTGAAATTTT+CGG - chr4_1:59674784-59674803 None:intergenic 35.0%
CAAGTTCTACCATAGTCATT+AGG - chr4_1:59674853-59674872 None:intergenic 35.0%
GAAATGGTATGAGAGATTTC+TGG + chr4_1:59674880-59674899 Msa0560370:CDS 35.0%
ACTTTACATACTTTCCCCAA+AGG + chr4_1:59674943-59674962 Msa0560370:intron 35.0%
TTCCTACACTGAGTATTTGA+AGG + chr4_1:59675009-59675028 Msa0560370:CDS 35.0%
TCTTTCAATTTGGCATCCTT+GGG - chr4_1:59675100-59675119 None:intergenic 35.0%
ATCTTTCAATTTGGCATCCT+TGG - chr4_1:59675101-59675120 None:intergenic 35.0%
ATTGAGATCACAAGTTCAAC+AGG - chr4_1:59675307-59675326 None:intergenic 35.0%
AAGTGCATGAGAGGAAATTA+GGG - chr4_1:59675444-59675463 None:intergenic 35.0%
ACACTACACTTTCGAATTCT+AGG - chr4_1:59675467-59675486 None:intergenic 35.0%
! AGAATTCGAAAGTGTAGTGT+AGG + chr4_1:59675467-59675486 Msa0560370:intron 35.0%
GACAACAAATGTATGCCTTA+TGG - chr4_1:59675539-59675558 None:intergenic 35.0%
!! CTTATATCCAACTTTTAGGG+AGG + chr4_1:59675625-59675644 Msa0560370:intron 35.0%
TTTCTTACCTCCCTAAAAGT+TGG - chr4_1:59675635-59675654 None:intergenic 35.0%
!! AGAAATTTTAACCACTTGGG+AGG + chr4_1:59675650-59675669 Msa0560370:intron 35.0%
!! AAGGGAGTGATATGTCATTT+TGG + chr4_1:59675727-59675746 Msa0560370:intron 35.0%
AATGCAAAAGGATGCTAATG+TGG + chr4_1:59675815-59675834 Msa0560370:intron 35.0%
ATGCAAAAGGATGCTAATGT+GGG + chr4_1:59675816-59675835 Msa0560370:intron 35.0%
!! GCTGGTTCTTTTGTAATCTT+AGG + chr4_1:59676019-59676038 Msa0560370:intron 35.0%
GTAATCTTAGGAAAGTAGTG+GGG + chr4_1:59676031-59676050 Msa0560370:intron 35.0%
TAATCTTAGGAAAGTAGTGG+GGG + chr4_1:59676032-59676051 Msa0560370:intron 35.0%
ATCTTCTTAGAATCTGGGTT+TGG - chr4_1:59676094-59676113 None:intergenic 35.0%
ACTGCATCTTCTTAGAATCT+GGG - chr4_1:59676099-59676118 None:intergenic 35.0%
TTTAAGAGATGTTGTGGATG+GGG + chr4_1:59676134-59676153 Msa0560370:intron 35.0%
!!! GTACACCTTATTTTGGGTAT+TGG + chr4_1:59676335-59676354 Msa0560370:intron 35.0%
GAGATCCAATACCCAAAATA+AGG - chr4_1:59676343-59676362 None:intergenic 35.0%
GATAACGAACATGCTAAATC+AGG - chr4_1:59676606-59676625 None:intergenic 35.0%
GGTTTCGTAATGCAAACTAA+AGG - chr4_1:59676824-59676843 None:intergenic 35.0%
GCATCCCTTAAAATAGAAAG+AGG + chr4_1:59676849-59676868 Msa0560370:three_prime_UTR 35.0%
ACTGTTCTCTTGATAAGATC+TGG + chr4_1:59677068-59677087 Msa0560370:three_prime_UTR 35.0%
! GATAAGATCTGGAACATAAC+TGG + chr4_1:59677079-59677098 Msa0560370:three_prime_UTR 35.0%
TTCCGGAACAAAGAATAACG+TGG + chr4_1:59673522-59673541 Msa0560370:CDS 40.0%
AGCCACGTTATTCTTTGTTC+CGG - chr4_1:59673527-59673546 None:intergenic 40.0%
CCATCCTCTCTCATAATCTT+CGG - chr4_1:59673577-59673596 None:intergenic 40.0%
ATTACCATGAAGCAGTTCCA+AGG - chr4_1:59673610-59673629 None:intergenic 40.0%
! TTCGTTGTTGATTGTAGCCA+TGG + chr4_1:59673720-59673739 Msa0560370:intron 40.0%
! TCGTTGTTGATTGTAGCCAT+GGG + chr4_1:59673721-59673740 Msa0560370:intron 40.0%
TTTGATTGGTAAGTCTCCCA+TGG - chr4_1:59673740-59673759 None:intergenic 40.0%
! TCATGTGCCGAAGAATTTTC+TGG + chr4_1:59673784-59673803 Msa0560370:CDS 40.0%
TTCTGGATAAAGTCGCTTAC+AGG + chr4_1:59673801-59673820 Msa0560370:CDS 40.0%
!!! CCCCACTGATGTGTTTTTTA+AGG + chr4_1:59673844-59673863 Msa0560370:CDS 40.0%
GAAACGACACGACATTGAAA+CGG - chr4_1:59674046-59674065 None:intergenic 40.0%
!! GTCGTTTCTAGTGTTCATGT+TGG + chr4_1:59674058-59674077 Msa0560370:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG - chr4_1:59674391-59674410 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG - chr4_1:59674390-59674409 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG + chr4_1:59674390-59674409 Msa0560370:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG + chr4_1:59674391-59674410 Msa0560370:intron 40.0%
! GAAATTTTCGGAGTGACTTG+AGG - chr4_1:59674772-59674791 None:intergenic 40.0%
CTCCGAAAATTTCAGCATAG+TGG + chr4_1:59674779-59674798 Msa0560370:CDS 40.0%
CGAAAATTTCAGCATAGTGG+TGG + chr4_1:59674782-59674801 Msa0560370:CDS 40.0%
AATTTCAGCATAGTGGTGGT+TGG + chr4_1:59674786-59674805 Msa0560370:CDS 40.0%
ATTTCAGCATAGTGGTGGTT+GGG + chr4_1:59674787-59674806 Msa0560370:CDS 40.0%
TTGAAGAAGCAGAGAATGAG+AGG + chr4_1:59674822-59674841 Msa0560370:CDS 40.0%
TAGAACTTGTGAAGCCGAAA+TGG + chr4_1:59674864-59674883 Msa0560370:CDS 40.0%
TTACATACTTTCCCCAAAGG+TGG + chr4_1:59674946-59674965 Msa0560370:intron 40.0%
GTCCTTCAAATACTCAGTGT+AGG - chr4_1:59675014-59675033 None:intergenic 40.0%
CAATAGTCTATTGCAATGGC+AGG - chr4_1:59675070-59675089 None:intergenic 40.0%
CTGCCATTGCAATAGACTAT+TGG + chr4_1:59675068-59675087 Msa0560370:CDS 40.0%
CCTCCAATAGTCTATTGCAA+TGG - chr4_1:59675074-59675093 None:intergenic 40.0%
CCATTGCAATAGACTATTGG+AGG + chr4_1:59675071-59675090 Msa0560370:CDS 40.0%
AATTAGGGGAAAATGCGATC+TGG - chr4_1:59675429-59675448 None:intergenic 40.0%
AGTGCATGAGAGGAAATTAG+GGG - chr4_1:59675443-59675462 None:intergenic 40.0%
GAAGTGCATGAGAGGAAATT+AGG - chr4_1:59675445-59675464 None:intergenic 40.0%
! AATTCTAGGAAGTGCATGAG+AGG - chr4_1:59675453-59675472 None:intergenic 40.0%
GCTATACACTTTACAAAGGG+CGG + chr4_1:59675497-59675516 Msa0560370:intron 40.0%
!!! TGTCATTTTGGAGTGATCCA+TGG + chr4_1:59675739-59675758 Msa0560370:intron 40.0%
!!! GTCATTTTGGAGTGATCCAT+GGG + chr4_1:59675740-59675759 Msa0560370:intron 40.0%
TGCAAAAGGATGCTAATGTG+GGG + chr4_1:59675817-59675836 Msa0560370:intron 40.0%
GAGAAAGTCAATCCATTGGA+AGG + chr4_1:59675889-59675908 Msa0560370:intron 40.0%
ATCAACCGTGAGAACTTCAA+GGG + chr4_1:59675939-59675958 Msa0560370:intron 40.0%
TAGAATCTGGGTTTGGACTT+TGG - chr4_1:59676087-59676106 None:intergenic 40.0%
CACTGCATCTTCTTAGAATC+TGG - chr4_1:59676100-59676119 None:intergenic 40.0%
CACTGATATCGGCATCAAAT+TGG - chr4_1:59676220-59676239 None:intergenic 40.0%
CAATTTGATGCCGATATCAG+TGG + chr4_1:59676218-59676237 Msa0560370:intron 40.0%
!! TTTGGGTATTGGATCTCGTT+TGG + chr4_1:59676346-59676365 Msa0560370:intron 40.0%
GTATATGTCATCTTCCAAGG+TGG - chr4_1:59676457-59676476 None:intergenic 40.0%
AACGAACATGCTAAATCAGG+TGG - chr4_1:59676603-59676622 None:intergenic 40.0%
ACAATTCCGTTCTTTCATGC+AGG + chr4_1:59676710-59676729 Msa0560370:intron 40.0%
GGATATCCTGCATGAAAGAA+CGG - chr4_1:59676719-59676738 None:intergenic 40.0%
TAATGATAACCAAGAGGAGC+TGG - chr4_1:59676771-59676790 None:intergenic 40.0%
AGCTCCTCTTGGTTATCATT+AGG + chr4_1:59676770-59676789 Msa0560370:CDS 40.0%
GCTCCTCTTGGTTATCATTA+GGG + chr4_1:59676771-59676790 Msa0560370:CDS 40.0%
AAGCCCTAATGATAACCAAG+AGG - chr4_1:59676777-59676796 None:intergenic 40.0%
GAAAAAGGTAAAGATACCCG+AGG + chr4_1:59677141-59677160 Msa0560370:three_prime_UTR 40.0%
GCATTCAGCATTGTGTTACG+TGG + chr4_1:59673273-59673292 Msa0560370:CDS 45.0%
TTCTAACCGTCAAAGTTCGG+CGG + chr4_1:59673324-59673343 Msa0560370:CDS 45.0%
! GAAACGGAGGGTTCTTTTAC+TGG + chr4_1:59673404-59673423 Msa0560370:intron 45.0%
! GAGGGTTCTTTTACTGGAAG+AGG + chr4_1:59673410-59673429 Msa0560370:intron 45.0%
CCGAAGATTATGAGAGAGGA+TGG + chr4_1:59673574-59673593 Msa0560370:CDS 45.0%
! CAATCACATGTGTCGGTGTA+AGG - chr4_1:59673977-59673996 None:intergenic 45.0%
GCACCCACCTAAAAACACTA+AGG + chr4_1:59674197-59674216 Msa0560370:intron 45.0%
GCACCCACCTAAAAACACTA+AGG - chr4_1:59674197-59674216 None:intergenic 45.0%
CTGTTTCGAGCATCATTGCA+CGG - chr4_1:59674709-59674728 None:intergenic 45.0%
GAGGATGCACCTAATGACTA+TGG + chr4_1:59674841-59674860 Msa0560370:CDS 45.0%
!! ATTTCTGGTCCTTGCTGTAC+AGG + chr4_1:59674895-59674914 Msa0560370:CDS 45.0%
! TTTCTGGTCCTTGCTGTACA+GGG + chr4_1:59674896-59674915 Msa0560370:CDS 45.0%
AGAAAACTCCCTGTACAGCA+AGG - chr4_1:59674907-59674926 None:intergenic 45.0%
AACTCTATGAGCCACCTTTG+GGG - chr4_1:59674960-59674979 None:intergenic 45.0%
CAACTCTATGAGCCACCTTT+GGG - chr4_1:59674961-59674980 None:intergenic 45.0%
ACAACTCTATGAGCCACCTT+TGG - chr4_1:59674962-59674981 None:intergenic 45.0%
AAGGTGGCTCATAGAGTTGT+TGG + chr4_1:59674962-59674981 Msa0560370:intron 45.0%
AGGTGGCTCATAGAGTTGTT+GGG + chr4_1:59674963-59674982 Msa0560370:intron 45.0%
! CTGGTTCTCTAGTAAGTGCA+GGG + chr4_1:59675692-59675711 Msa0560370:intron 45.0%
TAGTAAGTGCAGGGAAGTAG+TGG + chr4_1:59675701-59675720 Msa0560370:intron 45.0%
AGTAAGTGCAGGGAAGTAGT+GGG + chr4_1:59675702-59675721 Msa0560370:intron 45.0%
!!! TTTTGGAGTGATCCATGGGT+AGG + chr4_1:59675744-59675763 Msa0560370:intron 45.0%
! TTTGGAGTGATCCATGGGTA+GGG + chr4_1:59675745-59675764 Msa0560370:intron 45.0%
AAAAGGATGCTAATGTGGGG+AGG + chr4_1:59675820-59675839 Msa0560370:intron 45.0%
GGAGGAGAAAGTCAATCCAT+TGG + chr4_1:59675885-59675904 Msa0560370:intron 45.0%
GTCAATCCATTGGAAGGAGT+TGG + chr4_1:59675895-59675914 Msa0560370:intron 45.0%
CATTCACCAACTCCTTCCAA+TGG - chr4_1:59675904-59675923 None:intergenic 45.0%
GATCAACCGTGAGAACTTCA+AGG + chr4_1:59675938-59675957 Msa0560370:intron 45.0%
TCAACCGTGAGAACTTCAAG+GGG + chr4_1:59675940-59675959 Msa0560370:intron 45.0%
AGTACCCCTTGAAGTTCTCA+CGG - chr4_1:59675947-59675966 None:intergenic 45.0%
!! AGGGGTACTCAACAGACAAA+TGG + chr4_1:59675958-59675977 Msa0560370:intron 45.0%
! GGGGTACTCAACAGACAAAT+GGG + chr4_1:59675959-59675978 Msa0560370:intron 45.0%
ACTCAACAGACAAATGGGTC+TGG + chr4_1:59675964-59675983 Msa0560370:intron 45.0%
AGGAGGAGAATTAAACGAGC+TGG + chr4_1:59676001-59676020 Msa0560370:intron 45.0%
! AGGGGACTGATACGTTGTTT+TGG + chr4_1:59676055-59676074 Msa0560370:intron 45.0%
GATGTTGTGGATGGGGTTTA+TGG + chr4_1:59676141-59676160 Msa0560370:intron 45.0%
TGTGGATGGGGTTTATGGAA+TGG + chr4_1:59676146-59676165 Msa0560370:intron 45.0%
CCAGAAACAGCCACTGATAT+CGG - chr4_1:59676231-59676250 None:intergenic 45.0%
!! ATATCAGTGGCTGTTTCTGG+AGG + chr4_1:59676231-59676250 Msa0560370:intron 45.0%
!! TATCAGTGGCTGTTTCTGGA+GGG + chr4_1:59676232-59676251 Msa0560370:intron 45.0%
GAACACCAGTGTGAAACCAA+TGG - chr4_1:59676676-59676695 None:intergenic 45.0%
ATGCAGGATATCCACTTCCA+CGG + chr4_1:59676726-59676745 Msa0560370:intron 45.0%
ACTTCCACGGTAAAGAACTG+CGG + chr4_1:59676739-59676758 Msa0560370:CDS 45.0%
! TCTGGAACATAACTGGGTGA+AGG + chr4_1:59677086-59677105 Msa0560370:three_prime_UTR 45.0%
CTGGAACATAACTGGGTGAA+GGG + chr4_1:59677087-59677106 Msa0560370:three_prime_UTR 45.0%
TGGAACATAACTGGGTGAAG+GGG + chr4_1:59677088-59677107 Msa0560370:three_prime_UTR 45.0%
!! TCATATATATATATATATAT+AGG + chr4_1:59674161-59674180 Msa0560370:intron 5.0%
!! CATATATATATATATATATA+GGG + chr4_1:59674162-59674181 Msa0560370:intron 5.0%
!! ATATATATATATATATATAG+GGG + chr4_1:59674163-59674182 Msa0560370:intron 5.0%
!!! TAAACTTTATTTTAATTAAA+AGG + chr4_1:59674277-59674296 Msa0560370:intron 5.0%
!! TATATATATATATATATATG+GGG - chr4_1:59674162-59674181 None:intergenic 5.0%
TCACAACCGCCGAACTTTGA+CGG - chr4_1:59673333-59673352 None:intergenic 50.0%
GACGGAGAAGAACGAGAAGA+AGG + chr4_1:59673492-59673511 Msa0560370:CDS 50.0%
GGAGAAGAACGAGAAGAAGG+AGG + chr4_1:59673495-59673514 Msa0560370:CDS 50.0%
GAGAAGAAGGAGGAGAGTTC+CGG + chr4_1:59673505-59673524 Msa0560370:CDS 50.0%
ACGTGGCTGTGTCGAGTTAT+TGG + chr4_1:59673539-59673558 Msa0560370:CDS 50.0%
CGTGGCTGTGTCGAGTTATT+GGG + chr4_1:59673540-59673559 Msa0560370:CDS 50.0%
GTGGCTGTGTCGAGTTATTG+GGG + chr4_1:59673541-59673560 Msa0560370:CDS 50.0%
TGGCTGTGTCGAGTTATTGG+GGG + chr4_1:59673542-59673561 Msa0560370:CDS 50.0%
CGAGTTATTGGGGGATTTCG+AGG + chr4_1:59673551-59673570 Msa0560370:CDS 50.0%
GAGGCCGAAGATTATGAGAG+AGG + chr4_1:59673570-59673589 Msa0560370:CDS 50.0%
TGAGAGAGGATGGAACAGAG+TGG + chr4_1:59673584-59673603 Msa0560370:CDS 50.0%
TAAGTGTTCTCTGTCGCACG+AGG + chr4_1:59673940-59673959 Msa0560370:intron 50.0%
TGAAACGGACACGATGACAC+AGG - chr4_1:59674031-59674050 None:intergenic 50.0%
TCTATTGCAATGGCAGGAGC+AGG - chr4_1:59675064-59675083 None:intergenic 50.0%
AGACTATTGGAGGCTTCCCA+AGG + chr4_1:59675081-59675100 Msa0560370:CDS 50.0%
! AACAGTCATTCGCGCTGATG+AGG + chr4_1:59675126-59675145 Msa0560370:CDS 50.0%
GAACACTCACTGAAGCGAAG+TGG - chr4_1:59675171-59675190 None:intergenic 50.0%
TTTAACCACTTGGGAGGACG+AGG + chr4_1:59675656-59675675 Msa0560370:intron 50.0%
ACGAGGAGAGTCAAACAAGC+TGG + chr4_1:59675673-59675692 Msa0560370:intron 50.0%
! GCTGGTTCTCTAGTAAGTGC+AGG + chr4_1:59675691-59675710 Msa0560370:intron 50.0%
GTAAGTGCAGGGAAGTAGTG+GGG + chr4_1:59675703-59675722 Msa0560370:intron 50.0%
TAAGTGCAGGGAAGTAGTGG+GGG + chr4_1:59675704-59675723 Msa0560370:intron 50.0%
GTGTGGAACAAGTTCGGAGA+GGG + chr4_1:59675844-59675863 Msa0560370:intron 50.0%
TGTGGAACAAGTTCGGAGAG+GGG + chr4_1:59675845-59675864 Msa0560370:intron 50.0%
GTGAAGGAAAGTGGGATTGG+AGG + chr4_1:59675867-59675886 Msa0560370:intron 50.0%
! TCTTAGGAAAGTAGTGGGGG+AGG + chr4_1:59676035-59676054 Msa0560370:intron 50.0%
! CTTAGGAAAGTAGTGGGGGA+GGG + chr4_1:59676036-59676055 Msa0560370:intron 50.0%
! TTAGGAAAGTAGTGGGGGAG+GGG + chr4_1:59676037-59676056 Msa0560370:intron 50.0%
! CCGATATCAGTGGCTGTTTC+TGG + chr4_1:59676228-59676247 Msa0560370:intron 50.0%
!! GGGTATTGGATCTCGTTTGG+AGG + chr4_1:59676349-59676368 Msa0560370:intron 50.0%
GCAGTTCTTTACCGTGGAAG+TGG - chr4_1:59676740-59676759 None:intergenic 50.0%
CTTCCACGGTAAAGAACTGC+GGG + chr4_1:59676740-59676759 Msa0560370:CDS 50.0%
GTCAAAGTTCGGCGGTTGTG+AGG + chr4_1:59673332-59673351 Msa0560370:CDS 55.0%
CATCGGTGTAGAGATGCCTC+TGG - chr4_1:59673381-59673400 None:intergenic 55.0%
!! CAGAGGCATCTCTACACCGA+TGG + chr4_1:59673379-59673398 Msa0560370:CDS 55.0%
AGGCATCTCTACACCGATGG+CGG + chr4_1:59673382-59673401 Msa0560370:CDS 55.0%
!! CTCTACACCGATGGCGGAAA+CGG + chr4_1:59673388-59673407 Msa0560370:CDS 55.0%
TCTTCCGCTGATGGCTTCGA+CGG - chr4_1:59673457-59673476 None:intergenic 55.0%
GAAGCCATCAGCGGAAGAGA+CGG + chr4_1:59673459-59673478 Msa0560370:CDS 55.0%
AGAGACGGAGGCGAAATCGA+CGG + chr4_1:59673474-59673493 Msa0560370:CDS 55.0%
AGGATGGAACAGAGTGGCCT+TGG + chr4_1:59673590-59673609 Msa0560370:CDS 55.0%
! GTGGCCTTGGAACTGCTTCA+TGG + chr4_1:59673603-59673622 Msa0560370:CDS 55.0%
GAAACAGTTGCAGCTGTCCC+TGG + chr4_1:59674722-59674741 Msa0560370:CDS 55.0%
AGTTGCAGCTGTCCCTGGAA+TGG + chr4_1:59674727-59674746 Msa0560370:CDS 55.0%
CTGTCCCTGGAATGGTTGGA+GGG + chr4_1:59674735-59674754 Msa0560370:CDS 55.0%
GCATCCCTCCAACCATTCCA+GGG - chr4_1:59674742-59674761 None:intergenic 55.0%
AGCATCCCTCCAACCATTCC+AGG - chr4_1:59674743-59674762 None:intergenic 55.0%
CGAAGTGGTTCACATCCCGA+TGG - chr4_1:59675156-59675175 None:intergenic 55.0%
AGTGATCCATGGGTAGGGCA+AGG + chr4_1:59675750-59675769 Msa0560370:intron 55.0%
GTGATCCATGGGTAGGGCAA+GGG + chr4_1:59675751-59675770 Msa0560370:intron 55.0%
TGATCCATGGGTAGGGCAAG+GGG + chr4_1:59675752-59675771 Msa0560370:intron 55.0%
! GGAGGCGTGTGGAACAAGTT+CGG + chr4_1:59675838-59675857 Msa0560370:intron 55.0%
CGTGTGGAACAAGTTCGGAG+AGG + chr4_1:59675843-59675862 Msa0560370:intron 55.0%
ACAAGTTCGGAGAGGGGTGA+AGG + chr4_1:59675851-59675870 Msa0560370:intron 55.0%
GGAGAGGGGTGAAGGAAAGT+GGG + chr4_1:59675859-59675878 Msa0560370:intron 55.0%
GGGGTGAAGGAAAGTGGGAT+TGG + chr4_1:59675864-59675883 Msa0560370:intron 55.0%
CAGACAAATGGGTCTGGCTG+CGG + chr4_1:59675970-59675989 Msa0560370:intron 55.0%
AGACAAATGGGTCTGGCTGC+GGG + chr4_1:59675971-59675990 Msa0560370:intron 55.0%
!! GCTGGCCATTGGTTTCACAC+TGG + chr4_1:59676668-59676687 Msa0560370:intron 55.0%
! GTGGCTCGCCGAGCTTTGAT+CGG + chr4_1:59673292-59673311 Msa0560370:CDS 60.0%
TCCGGCCACCGATCAAAGCT+CGG - chr4_1:59673303-59673322 None:intergenic 60.0%
GGCGGTTGTGAGGTCATTCG+CGG + chr4_1:59673342-59673361 Msa0560370:CDS 60.0%
GGTTGTGAGGTCATTCGCGG+CGG + chr4_1:59673345-59673364 Msa0560370:CDS 60.0%
TCATTCGCGGCGGCGGAAAT+CGG + chr4_1:59673355-59673374 Msa0560370:CDS 60.0%
!! TACACCGATGGCGGAAACGG+AGG + chr4_1:59673391-59673410 Msa0560370:CDS 60.0%
!! ACACCGATGGCGGAAACGGA+GGG + chr4_1:59673392-59673411 Msa0560370:CDS 60.0%
GAACCCTCCGTTTCCGCCAT+CGG - chr4_1:59673398-59673417 None:intergenic 60.0%
TCTGTCGCACGAGGCGTGTA+TGG + chr4_1:59673949-59673968 Msa0560370:intron 60.0%
GCAGCTGTCCCTGGAATGGT+TGG + chr4_1:59674731-59674750 Msa0560370:CDS 60.0%
GCTGTCCCTGGAATGGTTGG+AGG + chr4_1:59674734-59674753 Msa0560370:CDS 60.0%
! GCGCTGATGAGGCTCACCAT+CGG + chr4_1:59675137-59675156 Msa0560370:CDS 60.0%
CGCTGATGAGGCTCACCATC+GGG + chr4_1:59675138-59675157 Msa0560370:CDS 60.0%
ACTCTCCTCGTCCTCCCAAG+TGG - chr4_1:59675664-59675683 None:intergenic 60.0%
! TGCAGGGAAGTAGTGGGGGA+AGG + chr4_1:59675708-59675727 Msa0560370:intron 60.0%
! GCAGGGAAGTAGTGGGGGAA+GGG + chr4_1:59675709-59675728 Msa0560370:intron 60.0%
ATCTCCCCTTGCCCTACCCA+TGG - chr4_1:59675759-59675778 None:intergenic 60.0%
! TGCTAATGTGGGGAGGCGTG+TGG + chr4_1:59675827-59675846 Msa0560370:intron 60.0%
CGGAGAGGGGTGAAGGAAAG+TGG + chr4_1:59675858-59675877 Msa0560370:intron 60.0%
CGTCCCGCAGTTCTTTACCG+TGG - chr4_1:59676746-59676765 None:intergenic 60.0%
! GCTCGCCGAGCTTTGATCGG+TGG + chr4_1:59673295-59673314 Msa0560370:CDS 65.0%
! GCCGAGCTTTGATCGGTGGC+CGG + chr4_1:59673299-59673318 Msa0560370:CDS 65.0%
TGTGAGGTCATTCGCGGCGG+CGG + chr4_1:59673348-59673367 Msa0560370:CDS 65.0%
TGCGCCGTCGAAGCCATCAG+CGG + chr4_1:59673450-59673469 Msa0560370:CDS 65.0%
GCCATCAGCGGAAGAGACGG+AGG + chr4_1:59673462-59673481 Msa0560370:CDS 65.0%
GCCTCCGTCTCTTCCGCTGA+TGG - chr4_1:59673466-59673485 None:intergenic 65.0%
ATGGGTCTGGCTGCGGGTGA+AGG + chr4_1:59675977-59675996 Msa0560370:intron 65.0%
TGGGTCTGGCTGCGGGTGAA+GGG + chr4_1:59675978-59675997 Msa0560370:intron 65.0%
GTCTGGCTGCGGGTGAAGGG+AGG + chr4_1:59675981-59676000 Msa0560370:intron 70.0%
TGGCTGCGGGTGAAGGGAGG+AGG + chr4_1:59675984-59676003 Msa0560370:intron 70.0%
CGGGACGCACCAGCTCCTCT+TGG + chr4_1:59676759-59676778 Msa0560370:CDS 70.0%
CGGCGGCGGAAATCGGCCAG+AGG + chr4_1:59673362-59673381 Msa0560370:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59673268 59677164 59673268 ID=Msa0560370;Name=Msa0560370
chr4_1 mRNA 59673268 59677164 59673268 ID=Msa0560370-mRNA-1;Parent=Msa0560370;Name=Msa0560370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.6|0.33|1|0.4|0.5|6|373|330
chr4_1 exon 59673268 59673413 59673268 ID=Msa0560370-mRNA-1:exon:18421;Parent=Msa0560370-mRNA-1
chr4_1 exon 59673432 59673624 59673432 ID=Msa0560370-mRNA-1:exon:18422;Parent=Msa0560370-mRNA-1
chr4_1 exon 59673737 59673865 59673737 ID=Msa0560370-mRNA-1:exon:18423;Parent=Msa0560370-mRNA-1
chr4_1 exon 59674692 59674940 59674692 ID=Msa0560370-mRNA-1:exon:18424;Parent=Msa0560370-mRNA-1
chr4_1 exon 59674965 59675180 59674965 ID=Msa0560370-mRNA-1:exon:18425;Parent=Msa0560370-mRNA-1
chr4_1 exon 59676732 59677164 59676732 ID=Msa0560370-mRNA-1:exon:18426;Parent=Msa0560370-mRNA-1
chr4_1 CDS 59673268 59673413 59673268 ID=Msa0560370-mRNA-1:cds;Parent=Msa0560370-mRNA-1
chr4_1 CDS 59673432 59673624 59673432 ID=Msa0560370-mRNA-1:cds;Parent=Msa0560370-mRNA-1
chr4_1 CDS 59673737 59673865 59673737 ID=Msa0560370-mRNA-1:cds;Parent=Msa0560370-mRNA-1
chr4_1 CDS 59674692 59674940 59674692 ID=Msa0560370-mRNA-1:cds;Parent=Msa0560370-mRNA-1
chr4_1 CDS 59674965 59675180 59674965 ID=Msa0560370-mRNA-1:cds;Parent=Msa0560370-mRNA-1
chr4_1 CDS 59676732 59676791 59676732 ID=Msa0560370-mRNA-1:cds;Parent=Msa0560370-mRNA-1
chr4_1 three_prime_UTR 59676792 59677164 59676792 ID=Msa0560370-mRNA-1:three_prime_utr;Parent=Msa0560370-mRNA-1
Gene Sequence

>Msa0560370

ATGAAGCATTCAGCATTGTGTTACGTGGCTCGCCGAGCTTTGATCGGTGGCCGGAATTCTAACCGTCAAAGTTCGGCGGTTGTGAGGTCATTCGCGGCGGCGGAAATCGGCCAGAGGCATCTCTACACCGATGGCGGAAACGGAGGGATGATGTCTTCGCAAGCTGCGCCGTCGAAGCCATCAGCGGAAGAGACGGAGGCGAAATCGACGGAGAAGAACGAGAAGAAGGAGGAGAGTTCCGGAACAAAGAATAACGTGGCTGTGTCGAGTTATTGGGGGATTTCGAGGCCGAAGATTATGAGAGAGGATGGAACAGAGTGGCCTTGGAACTGCTTCATGCCATGGGAGACTTACCAATCAAACGTTTCCATTGATCTGAATAAGCATCATGTGCCGAAGAATTTTCTGGATAAAGTCGCTTACAGGACAGTGAAGCTTCTCAGAATCCCCACTGATGTGTTTTTTAAGAGACGTTATGGTTGCCGTGCAATGATGCTCGAAACAGTTGCAGCTGTCCCTGGAATGGTTGGAGGGATGCTGTTGCACCTCAAGTCACTCCGAAAATTTCAGCATAGTGGTGGTTGGGTCAAAGCATTGCTTGAAGAAGCAGAGAATGAGAGGATGCACCTAATGACTATGGTAGAACTTGTGAAGCCGAAATGGTATGAGAGATTTCTGGTCCTTGCTGTACAGGGAGTTTTCTTCAATGCATTCTTTGTGGCTCATAGAGTTGTTGGGTACCTTGAAGAAGAAGCTATACATTCCTACACTGAGTATTTGAAGGACATTGATAGTGGTGCAATTGAAAATGTTCCTGCTCCTGCCATTGCAATAGACTATTGGAGGCTTCCCAAGGATGCCAAATTGAAAGATGTCATAACAGTCATTCGCGCTGATGAGGCTCACCATCGGGATGTGAACCACTTCGCTTCAGATATCCACTTCCACGGTAAAGAACTGCGGGACGCACCAGCTCCTCTTGGTTATCATTAG

Protein sequence

>Msa0560370

MKHSALCYVARRALIGGRNSNRQSSAVVRSFAAAEIGQRHLYTDGGNGGMMSSQAAPSKPSAEETEAKSTEKNEKKEESSGTKNNVAVSSYWGISRPKIMREDGTEWPWNCFMPWETYQSNVSIDLNKHHVPKNFLDKVAYRTVKLLRIPTDVFFKRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWVKALLEEAENERMHLMTMVELVKPKWYERFLVLAVQGVFFNAFFVAHRVVGYLEEEAIHSYTEYLKDIDSGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIHFHGKELRDAPAPLGYH*