AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000743

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000743.t1 MTR_1g040215 72.482 407 112 0 1 407 55 461 0.0 630
MS.gene000743.t1 MTR_1g040175 74.201 407 102 1 1 407 55 458 0.0 629
MS.gene000743.t1 MTR_0042s0190 96.296 297 11 0 111 407 1 297 0.0 594
MS.gene000743.t1 MTR_1g040195 73.438 384 100 2 24 407 55 436 0.0 587
MS.gene000743.t1 MTR_1g040320 70.762 407 83 1 1 407 55 425 0.0 579
MS.gene000743.t1 MTR_1g040315 62.654 407 108 4 1 407 55 417 1.41e-177 501
MS.gene000743.t1 MTR_0042s0190 95.690 232 10 0 176 407 1 232 4.20e-163 457
MS.gene000743.t1 MTR_7g114550 56.391 399 163 6 1 394 56 448 1.29e-160 460
MS.gene000743.t1 MTR_7g114520 55.231 411 175 6 1 407 57 462 2.16e-159 457
MS.gene000743.t1 MTR_7g114560 56.110 401 165 6 1 396 56 450 1.69e-158 454
MS.gene000743.t1 MTR_5g076700 54.390 410 179 6 1 407 56 460 1.99e-156 449
MS.gene000743.t1 MTR_7g114470 55.639 399 170 5 1 395 57 452 3.07e-154 444
MS.gene000743.t1 MTR_1g081660 56.959 388 162 5 1 386 64 448 3.35e-154 443
MS.gene000743.t1 MTR_7g114490 55.497 382 162 5 1 378 56 433 3.05e-148 430
MS.gene000743.t1 MTR_7g114510 50.314 318 150 5 93 407 8 320 2.05e-103 309
MS.gene000743.t1 MTR_0502s0010 56.790 243 97 4 46 284 1 239 3.70e-94 283
MS.gene000743.t1 MTR_3g035000 59.910 222 62 3 145 365 43 238 2.86e-85 262
MS.gene000743.t1 MTR_7g114420 45.833 288 123 5 111 395 1 258 4.02e-80 248
MS.gene000743.t1 MTR_3g098980 34.301 379 235 8 4 378 60 428 2.74e-73 236
MS.gene000743.t1 MTR_7g027175 36.283 339 205 7 4 336 62 395 2.77e-69 225
MS.gene000743.t1 MTR_8g096530 35.608 337 208 6 3 334 52 384 1.05e-68 224
MS.gene000743.t1 MTR_0042s0230 97.849 93 2 0 1 93 55 147 6.21e-59 189
MS.gene000743.t1 MTR_3g112180 33.529 340 206 11 10 336 61 393 1.57e-47 169
MS.gene000743.t1 MTR_4g007540 30.362 359 209 8 9 341 55 398 1.49e-45 162
MS.gene000743.t1 MTR_1g053315 31.563 339 221 7 8 336 76 413 2.29e-45 163
MS.gene000743.t1 MTR_2g105330 29.248 359 212 8 9 341 55 397 9.29e-45 160
MS.gene000743.t1 MTR_2g064495 28.969 359 213 8 9 341 55 397 3.11e-43 156
MS.gene000743.t1 MTR_8g075610 29.775 356 213 7 9 343 46 385 4.26e-43 156
MS.gene000743.t1 MTR_4g055170 27.907 344 234 6 2 333 61 402 6.87e-42 154
MS.gene000743.t1 MTR_7g114500 65.979 97 33 0 1 97 56 152 1.82e-41 144
MS.gene000743.t1 MTR_8g039950 83.784 74 12 0 1 74 55 128 1.56e-38 135
MS.gene000743.t1 MTR_3g051790 66.667 93 31 0 1 93 59 151 4.31e-37 133
MS.gene000743.t1 MTR_3g026950 26.415 371 222 10 7 338 51 409 4.33e-37 140
MS.gene000743.t1 MTR_2g015430 30.746 335 223 8 5 333 53 384 1.24e-36 139
MS.gene000743.t1 MTR_3g465930 28.530 347 225 12 5 333 64 405 1.46e-36 139
MS.gene000743.t1 MTR_6g053810 28.000 350 226 10 3 333 64 406 2.25e-36 138
MS.gene000743.t1 MTR_7g084940 28.144 334 223 9 10 334 69 394 1.52e-35 136
MS.gene000743.t1 MTR_3g465910 29.326 341 218 11 5 328 63 397 4.54e-35 136
MS.gene000743.t1 MTR_3g071320 29.532 342 219 11 10 336 60 394 3.20e-34 132
MS.gene000743.t1 MTR_3g465950 29.042 334 216 10 3 324 61 385 2.34e-33 130
MS.gene000743.t1 MTR_4g127650 27.684 354 224 9 9 336 65 412 5.42e-33 129
MS.gene000743.t1 MTR_7g110610 29.226 349 170 12 2 334 47 334 1.43e-32 127
MS.gene000743.t1 MTR_7g085990 27.174 368 226 12 7 336 52 415 1.59e-32 128
MS.gene000743.t1 MTR_7g085930 28.000 375 214 13 7 336 56 419 2.34e-32 127
MS.gene000743.t1 MTR_3g465990 28.448 348 215 11 8 333 66 401 4.24e-32 127
MS.gene000743.t1 MTR_7g084910 28.060 335 208 10 10 334 70 381 4.98e-32 126
MS.gene000743.t1 MTR_3g465980 29.023 348 213 12 8 333 66 401 6.68e-32 126
MS.gene000743.t1 MTR_3g049150 25.905 359 234 9 7 338 52 405 1.31e-31 125
MS.gene000743.t1 MTR_7g086000 26.816 358 222 12 7 331 57 407 7.52e-30 120
MS.gene000743.t1 MTR_3g465880 29.714 350 225 11 3 333 61 408 3.05e-29 119
MS.gene000743.t1 MTR_4g097090 26.849 365 217 10 9 338 64 413 3.79e-29 118
MS.gene000743.t1 MTR_7g056087 27.381 336 220 10 13 330 61 390 6.03e-29 117
MS.gene000743.t1 MTR_3g465870 29.317 249 162 7 3 241 63 307 4.25e-25 106
MS.gene000743.t1 MTR_5g090830 24.725 364 227 12 7 335 63 414 6.97e-23 100
MS.gene000743.t1 MTR_5g090810 24.100 361 233 11 7 335 63 414 6.05e-22 97.8
MS.gene000743.t1 MTR_4g094828 25.706 354 220 15 10 333 59 399 1.81e-20 93.2
MS.gene000743.t1 MTR_4g022670 26.582 395 251 19 7 378 52 430 1.04e-19 90.9
MS.gene000743.t1 MTR_3g450710 25.753 365 216 13 10 335 65 413 1.61e-19 90.5
MS.gene000743.t1 MTR_3g450690 23.529 408 268 13 10 387 72 465 2.53e-19 90.1
MS.gene000743.t1 MTR_4g022290 25.126 398 246 17 10 378 60 434 2.83e-19 89.7
MS.gene000743.t1 MTR_3g101900 25.000 360 230 13 10 344 66 410 4.00e-19 89.4
MS.gene000743.t1 MTR_3g101930 26.593 361 227 16 10 344 70 418 6.30e-19 88.6
MS.gene000743.t1 MTR_7g026860 25.700 393 258 16 5 378 50 427 8.89e-19 88.2
MS.gene000743.t1 MTR_5g090880 24.176 364 230 13 7 335 64 416 9.59e-19 88.2
MS.gene000743.t1 MTR_3g088420 26.355 406 244 22 5 383 50 427 1.24e-18 87.8
MS.gene000743.t1 MTR_4g022720 24.789 355 244 12 5 343 50 397 1.34e-18 87.8
MS.gene000743.t1 MTR_4g022800 25.381 394 258 17 5 376 50 429 1.99e-18 87.0
MS.gene000743.t1 MTR_8g041770 25.926 351 228 13 1 333 55 391 2.06e-18 87.0
MS.gene000743.t1 MTR_4g094832 25.419 358 225 16 40 378 85 419 8.20e-18 85.1
MS.gene000743.t1 MTR_4g022825 25.628 398 258 16 3 378 48 429 2.71e-17 83.6
MS.gene000743.t1 MTR_3g101960 26.741 359 223 14 10 343 68 411 2.92e-17 83.6
MS.gene000743.t1 MTR_8g079710 26.382 398 252 18 5 378 54 434 4.34e-17 83.2
MS.gene000743.t1 MTR_7g114417 65.385 52 17 1 35 85 29 80 8.77e-17 75.1
MS.gene000743.t1 MTR_1g094790 22.192 365 227 14 10 342 60 399 1.17e-16 82.0
MS.gene000743.t1 MTR_0190s0020 24.500 400 258 16 1 378 54 431 2.00e-16 81.3
MS.gene000743.t1 MTR_3g102020 25.706 354 239 12 7 343 66 412 2.67e-16 80.9
MS.gene000743.t1 MTR_5g026320 25.606 371 221 16 4 343 68 414 1.24e-14 75.9
MS.gene000743.t1 MTR_4g022760 26.821 302 202 10 7 293 52 349 2.85e-14 74.3
MS.gene000743.t1 MTR_4g013050 30.702 114 79 0 10 123 53 166 3.79e-14 73.9
MS.gene000743.t1 MTR_3g049140 28.481 158 94 4 197 338 48 202 1.05e-13 70.9
MS.gene000743.t1 MTR_8g467580 23.077 390 232 16 10 365 60 415 1.15e-13 72.8
MS.gene000743.t1 MTR_5g084870 21.842 380 230 15 1 343 50 399 1.88e-12 68.9
MS.gene000743.t1 MTR_3g051820 47.253 91 43 3 317 407 6 91 3.94e-12 62.4
MS.gene000743.t1 MTR_3g086020 22.063 349 214 14 8 336 59 369 7.71e-12 67.0
MS.gene000743.t1 MTR_8g467590 22.286 350 225 14 10 334 60 387 3.46e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000743.t1 AT5G17540 53.563 407 182 5 5 407 58 461 9.79e-148 427
MS.gene000743.t1 AT3G03480 52.835 388 171 7 5 386 68 449 4.63e-135 395
MS.gene000743.t1 AT5G41040 37.427 342 199 8 4 336 63 398 1.47e-74 239
MS.gene000743.t1 AT5G41040 37.427 342 199 8 4 336 79 414 1.77e-74 239
MS.gene000743.t1 AT5G63560 34.706 340 205 8 4 336 55 384 3.81e-66 217
MS.gene000743.t1 AT3G48720 33.038 339 216 8 4 336 55 388 2.32e-64 212
MS.gene000743.t1 AT1G27620 29.517 393 252 10 9 391 57 434 5.25e-46 164
MS.gene000743.t1 AT3G62160 31.373 357 192 12 2 334 47 374 1.28e-43 157
MS.gene000743.t1 AT1G03390 32.544 338 214 9 10 336 76 410 1.50e-43 158
MS.gene000743.t1 AT1G28680 29.464 336 229 7 3 333 55 387 4.00e-43 157
MS.gene000743.t1 AT5G48930 29.275 345 225 8 5 336 52 390 1.24e-41 152
MS.gene000743.t1 AT2G40230 32.749 342 205 11 10 336 59 390 1.26e-40 149
MS.gene000743.t1 AT1G65450 31.765 340 210 9 10 335 72 403 5.70e-40 148
MS.gene000743.t1 AT1G28680 30.435 299 201 6 3 297 55 350 5.76e-40 147
MS.gene000743.t1 AT5G57840 28.933 356 218 9 12 343 58 402 5.18e-39 145
MS.gene000743.t1 AT2G19070 28.492 358 223 10 7 336 55 407 2.57e-36 138
MS.gene000743.t1 AT5G07080 28.889 360 204 13 5 333 65 403 9.44e-32 125
MS.gene000743.t1 AT3G47170 26.946 334 190 11 6 301 66 383 1.57e-29 119
MS.gene000743.t1 AT2G25150 27.451 357 213 11 5 333 62 400 3.41e-28 115
MS.gene000743.t1 AT2G23510 28.977 352 208 15 6 333 65 398 1.51e-27 114
MS.gene000743.t1 AT1G78990 24.302 358 235 9 4 336 53 399 2.57e-23 101
MS.gene000743.t1 AT1G32910 24.599 374 249 13 10 361 65 427 4.48e-23 101
MS.gene000743.t1 AT3G50280 25.000 352 232 12 10 341 59 398 3.32e-21 95.5
MS.gene000743.t1 AT1G31490 24.217 351 221 13 7 335 59 386 1.67e-19 90.5
MS.gene000743.t1 AT1G65450 29.046 241 151 7 108 335 6 239 5.36e-19 87.0
MS.gene000743.t1 AT5G07860 25.000 396 251 11 10 384 72 442 8.59e-19 88.6
MS.gene000743.t1 AT5G42830 26.184 359 228 11 10 343 64 410 1.28e-18 87.8
MS.gene000743.t1 AT5G38130 25.141 354 233 13 13 347 82 422 1.44e-18 87.8
MS.gene000743.t1 AT5G16410 23.056 360 231 12 10 341 91 432 1.83e-18 87.4
MS.gene000743.t1 AT1G24420 25.698 358 225 15 20 364 75 404 2.86e-17 83.6
MS.gene000743.t1 AT1G24420 25.698 358 225 15 20 364 75 404 2.86e-17 83.6
MS.gene000743.t1 AT3G50270 24.207 347 230 12 10 333 62 398 6.21e-17 82.8
MS.gene000743.t1 AT5G23940 25.815 399 266 13 7 386 62 449 1.04e-16 82.4
MS.gene000743.t1 AT5G23970 22.857 350 230 12 3 334 47 374 3.23e-15 77.4
MS.gene000743.t1 AT3G26040 23.662 355 225 12 5 337 54 384 3.56e-15 77.4
MS.gene000743.t1 AT5G07850 24.069 349 235 13 10 336 70 410 1.31e-14 75.9
MS.gene000743.t1 AT3G50300 24.930 357 235 14 10 343 59 405 2.71e-14 74.7
MS.gene000743.t1 AT4G15390 22.159 352 226 14 8 334 62 390 2.42e-12 68.6
MS.gene000743.t1 AT4G15390 22.159 352 226 14 8 334 62 390 2.42e-12 68.6
MS.gene000743.t1 AT1G24430 22.689 357 213 13 10 339 62 382 1.48e-11 66.2
MS.gene000743.t1 AT5G47950 22.917 384 225 13 8 365 60 398 3.62e-11 65.1

Find 75 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCACCATGCTTTCTTCTT+TGG 0.166776 6.4:-28764224 MS.gene000743:CDS
CACTCCATTGTTGCTTATTC+AGG 0.213746 6.4:-28768049 MS.gene000743:intron
GCGTTCAATGGCAGATTTAT+TGG 0.233335 6.4:-28763880 MS.gene000743:CDS
CAACATTAACTCGCCTACTA+TGG 0.253148 6.4:-28763589 MS.gene000743:CDS
TCATCCTCCATTTCCATGCT+TGG 0.295990 6.4:-28768115 MS.gene000743:CDS
GGATTTAGAGATGTTGATTT+TGG 0.298021 6.4:-28763792 MS.gene000743:CDS
TTTGCTTTGTTGTCAGGTTC+TGG 0.302024 6.4:+28764269 None:intergenic
CATCCTCCATTTCCATGCTT+GGG 0.309107 6.4:-28768114 MS.gene000743:CDS
GATGTTACTCTTAAACAATT+TGG 0.341792 6.4:-28768147 MS.gene000743:CDS
AATGTGTTTGCTTTGTTGTC+AGG 0.355303 6.4:+28764263 None:intergenic
GAGCTTATCTATGATGTTCC+TGG 0.364126 6.4:-28768090 MS.gene000743:CDS
TGCTAAAGGAGAGGAAGGTT+TGG 0.383515 6.4:-28763682 MS.gene000743:CDS
GGCAGATTTATTGGTAATCA+AGG 0.387882 6.4:-28763871 MS.gene000743:CDS
ACTATGGGTGATAGAAAATC+TGG 0.400921 6.4:-28763573 MS.gene000743:CDS
AGCTCACCCAAGCATGGAAA+TGG 0.405012 6.4:+28768108 None:intergenic
AAACTTATGGTTGATTGTAC+TGG 0.411896 6.4:-28768201 MS.gene000743:CDS
AGGTCCTGGCAGGAAACTTA+TGG 0.416255 6.4:-28768214 MS.gene000743:CDS
CTGTCTGATGTTACACGTGC+TGG 0.421789 6.4:-28763813 MS.gene000743:CDS
CTTGTACCAAATGGTTACTA+TGG 0.428082 6.4:-28764020 MS.gene000743:CDS
ATCCATTGGCAGGTAGGTTG+AGG 0.439249 6.4:-28768239 MS.gene000743:CDS
TGCTTTAGCAGAAATATCTC+AGG 0.441961 6.4:-28764387 MS.gene000743:CDS
CGAGAGGTTGGTTAAAGAGT+TGG 0.447717 6.4:-28763628 MS.gene000743:CDS
AATCCAGTGCATACGTCAAC+GGG 0.450348 6.4:+28763943 None:intergenic
AAATGAAACCTCTACATTTG+AGG 0.462956 6.4:+28764468 None:intergenic
GTTAACCTACTTGTACCAAA+TGG 0.467873 6.4:-28764029 MS.gene000743:CDS
CACCACACGGGTGAGATAGA+AGG 0.468435 6.4:+28764353 None:intergenic
CTGATCCGTCAGTCATTGTA+TGG 0.469290 6.4:+28764429 None:intergenic
CATTGAACGCATGTACTCTT+CGG 0.471418 6.4:+28763893 None:intergenic
CCTACAGTTGTAATTGCAAC+GGG 0.475717 6.4:+28763981 None:intergenic
GCGTTACCATAGTAACCATT+TGG 0.486089 6.4:+28764014 None:intergenic
ATGGTGGACCATGTCATCTA+AGG 0.489326 6.4:+28764238 None:intergenic
TATGGAGGATTAGCTAGAGC+AGG 0.500867 6.4:-28763753 MS.gene000743:CDS
TCCATTGGCAGGTAGGTTGA+GGG 0.500938 6.4:-28768238 MS.gene000743:CDS
AACATTAACTCGCCTACTAT+GGG 0.506408 6.4:-28763588 MS.gene000743:CDS
TCCTACAGTTGTAATTGCAA+CGG 0.510617 6.4:+28763980 None:intergenic
AGAACGAATTGCGGCTACCT+CGG 0.515692 6.4:+28764196 None:intergenic
GCAGGAGATGGTACTAATCC+TGG 0.517099 6.4:-28763735 MS.gene000743:CDS
CGATGAGTACACGTCACTCT+TGG 0.519362 6.4:+28764302 None:intergenic
GGTTGAGGGAAGGTCCTGGC+AGG 0.519862 6.4:-28768224 MS.gene000743:CDS
AACCTCTCGATGACTTGAGT+TGG 0.522512 6.4:+28763642 None:intergenic
TTTATTATCCATTGGCAGGT+AGG 0.523223 6.4:-28768245 MS.gene000743:CDS
CGAATTGCGGCTACCTCGGT+TGG 0.525664 6.4:+28764200 None:intergenic
AACTCAAGTCATCGAGAGGT+TGG 0.529894 6.4:-28763640 MS.gene000743:CDS
GGTAGGTTGAGGGAAGGTCC+TGG 0.530522 6.4:-28768228 MS.gene000743:CDS
CGAAGAGTACATGCGTTCAA+TGG 0.533690 6.4:-28763892 MS.gene000743:CDS
CATACAATGACTGACGGATC+AGG 0.536611 6.4:-28764428 MS.gene000743:CDS
AAACCCGTTGACGTATGCAC+TGG 0.551116 6.4:-28763946 MS.gene000743:CDS
TAGAATTTCTCTGCACCACA+CGG 0.551792 6.4:+28764340 None:intergenic
TCCCTCAACCTACCTGCCAA+TGG 0.553662 6.4:+28768237 None:intergenic
GCAGAGAAATTCTAAGCGCA+AGG 0.556633 6.4:-28764331 MS.gene000743:CDS
AACTATAATCCAATTATGGA+AGG 0.560081 6.4:-28768318 None:intergenic
CCCGTTGCAATTACAACTGT+AGG 0.563191 6.4:-28763981 MS.gene000743:CDS
AAATCCAGTGCATACGTCAA+CGG 0.566201 6.4:+28763942 None:intergenic
GCAGATTTATTGGTAATCAA+GGG 0.567803 6.4:-28763870 MS.gene000743:CDS
TAGATAAGCTCACCCAAGCA+TGG 0.578422 6.4:+28768102 None:intergenic
TTCCAACTCAAGTCATCGAG+AGG 0.589195 6.4:-28763644 MS.gene000743:CDS
TCACCCAAGCATGGAAATGG+AGG 0.596066 6.4:+28768111 None:intergenic
AGTACCTGAATAAGCAACAA+TGG 0.598590 6.4:+28768045 None:intergenic
AGTAACCATTTGGTACAAGT+AGG 0.600048 6.4:+28764024 None:intergenic
GCATTCGCTGTAGTAAAATG+AGG 0.605286 6.4:+28763843 None:intergenic
TCAACCATAAGTTTCCTGCC+AGG 0.615495 6.4:+28768210 None:intergenic
GGATTAGCTAGAGCAGGAGA+TGG 0.616065 6.4:-28763747 MS.gene000743:CDS
TTCAACCATACAATGACTGA+CGG 0.622044 6.4:-28764434 MS.gene000743:CDS
ATGGTTGATTGTACTGGAGA+AGG 0.624573 6.4:-28768195 MS.gene000743:CDS
AGAATTTCTCTGCACCACAC+GGG 0.634985 6.4:+28764341 None:intergenic
CAGAGAAATTCTAAGCGCAA+GGG 0.649135 6.4:-28764330 MS.gene000743:CDS
TGGAAGTAGAGAACGAATTG+CGG 0.652589 6.4:+28764187 None:intergenic
TTGGACCAAAGAAGAAAGCA+TGG 0.654532 6.4:+28764219 None:intergenic
TTGGCAGGTAGGTTGAGGGA+AGG 0.661218 6.4:-28768234 MS.gene000743:CDS
GTAACACGCCTCAAATGTAG+AGG 0.664855 6.4:-28764476 MS.gene000743:CDS
GCTTTAGCAGAAATATCTCA+GGG 0.672367 6.4:-28764386 MS.gene000743:CDS
TTTAGCACATCTGAAGAACC+AGG 0.677737 6.4:+28768072 None:intergenic
TTTCTTCTTTGGTCCAACCG+AGG 0.682343 6.4:-28764213 MS.gene000743:CDS
AACCTTCTATCTCACCCGTG+TGG 0.728430 6.4:-28764355 MS.gene000743:CDS
GACCAAAGAAGAAAGCATGG+TGG 0.740416 6.4:+28764222 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTATTTTTATTTA+AGG + chr6.4:28763967-28763986 None:intergenic 0.0%
!!! TTTTTTTTATTTTTATTTAA+GGG + chr6.4:28763966-28763985 None:intergenic 0.0%
!! GATACTAAAAATAAATTTAA+GGG + chr6.4:28763935-28763954 None:intergenic 10.0%
!!! AAGAAAATAAATTAAGTTTT+TGG + chr6.4:28764108-28764127 None:intergenic 10.0%
!!! AGAAAATAAATTAAGTTTTT+GGG + chr6.4:28764107-28764126 None:intergenic 10.0%
!! AAAATTATGAAATTTGATGA+AGG - chr6.4:28765087-28765106 MS.gene000743:intron 15.0%
!! AATAAAAAAAATGTTAAAGG+CGG - chr6.4:28764066-28764085 MS.gene000743:CDS 15.0%
!! AATTTCTTAAATCCAATATA+AGG + chr6.4:28767066-28767085 None:intergenic 15.0%
!! CAAATAAATGTAAAATCTAA+GGG - chr6.4:28765580-28765599 MS.gene000743:intron 15.0%
!! CGATACTAAAAATAAATTTA+AGG + chr6.4:28763936-28763955 None:intergenic 15.0%
!! CTTAATTTCATATAACAATT+TGG + chr6.4:28765427-28765446 None:intergenic 15.0%
!! TCAAATAAATGTAAAATCTA+AGG - chr6.4:28765579-28765598 MS.gene000743:intron 15.0%
!! TTTGAAAATTCATAAGTAAT+CGG - chr6.4:28765363-28765382 MS.gene000743:intron 15.0%
!!! ATTTTTAAAAGGTATATAAC+TGG + chr6.4:28768153-28768172 None:intergenic 15.0%
!!! CATTTTTGAATTAAAACTAA+CGG - chr6.4:28765166-28765185 MS.gene000743:intron 15.0%
!!! CTTAATTTCTTTTCTTTTTT+GGG + chr6.4:28765037-28765056 None:intergenic 15.0%
!!! TCTTAATTTCTTTTCTTTTT+TGG + chr6.4:28765038-28765057 None:intergenic 15.0%
!!! TTAATTTTCATTACAGTTTT+TGG - chr6.4:28764006-28764025 MS.gene000743:CDS 15.0%
!!! TTGAATTGTGTTTTTTTATT+TGG + chr6.4:28764785-28764804 None:intergenic 15.0%
!!! TTTAAAGATTATTGTTGATT+TGG + chr6.4:28764762-28764781 None:intergenic 15.0%
!! AAGTTCAATAAAAAAACGTT+AGG - chr6.4:28764040-28764059 MS.gene000743:CDS 20.0%
!! ACTATATATCTAAAGATTGA+AGG + chr6.4:28765305-28765324 None:intergenic 20.0%
!! ATAAAAAAAATGTTAAAGGC+GGG - chr6.4:28764067-28764086 MS.gene000743:CDS 20.0%
!! ATGAGTTAAAAAATTACGTA+TGG - chr6.4:28765770-28765789 MS.gene000743:intron 20.0%
!! GATACTAAGTAATAACTTAA+GGG - chr6.4:28765261-28765280 MS.gene000743:intron 20.0%
!! TAACTTACTACTTTATTACT+TGG + chr6.4:28766820-28766839 None:intergenic 20.0%
!! TGATACTAAGTAATAACTTA+AGG - chr6.4:28765260-28765279 MS.gene000743:intron 20.0%
!! TGATTATAGTGAAAATCATT+TGG + chr6.4:28766114-28766133 None:intergenic 20.0%
!! TTAAGTTAAAAGACTAAAGA+TGG - chr6.4:28765669-28765688 MS.gene000743:intron 20.0%
!! TTAATGGAGAAATTGTTTAT+GGG + chr6.4:28764640-28764659 None:intergenic 20.0%
!! TTTAATGGAGAAATTGTTTA+TGG + chr6.4:28764641-28764660 None:intergenic 20.0%
!!! AAATCATCACATCATATTTT+TGG - chr6.4:28767721-28767740 MS.gene000743:intron 20.0%
!!! AACAAAAACAACTTTTTCTT+TGG + chr6.4:28765009-28765028 None:intergenic 20.0%
!!! AACAGACTTTTTTTTACTTA+AGG - chr6.4:28765229-28765248 MS.gene000743:intron 20.0%
!!! AATTGTTGTATTTTTGTTGT+TGG + chr6.4:28767698-28767717 None:intergenic 20.0%
!!! ACAGACTTTTTTTTACTTAA+GGG - chr6.4:28765230-28765249 MS.gene000743:intron 20.0%
!!! AGAAATTGTTTTTCCAAAAA+CGG + chr6.4:28764187-28764206 None:intergenic 20.0%
!!! ATACCTTTTAAAAATGCTAA+AGG - chr6.4:28768158-28768177 MS.gene000743:CDS 20.0%
!!! ATTTATTTTTAGTATCGCTT+CGG - chr6.4:28763939-28763958 MS.gene000743:CDS 20.0%
!!! ATTTCTAAAAGTACAAGATT+TGG - chr6.4:28764838-28764857 MS.gene000743:intron 20.0%
!!! CGTTTTTTTATTGAACTTAA+CGG + chr6.4:28764038-28764057 None:intergenic 20.0%
!!! CTCTCAGTATTTTATATATA+AGG + chr6.4:28766433-28766452 None:intergenic 20.0%
!!! TATTTAATTTGACAAAGCAA+GGG - chr6.4:28766358-28766377 MS.gene000743:intron 20.0%
!!! TTCTTATGATCTTTTTATCT+TGG - chr6.4:28763891-28763910 MS.gene000743:CDS 20.0%
!!! TTCTTTCTATTTTCCATAAA+TGG + chr6.4:28764380-28764399 None:intergenic 20.0%
! AAAACACAATTCAAAACACA+AGG - chr6.4:28764791-28764810 MS.gene000743:intron 25.0%
! AAACACAATTCAAAACACAA+GGG - chr6.4:28764792-28764811 MS.gene000743:intron 25.0%
! AAGATTACAAGTTCTTCTTA+GGG - chr6.4:28765859-28765878 MS.gene000743:intron 25.0%
! AATAATTAATGAGCGAATGA+AGG + chr6.4:28767325-28767344 None:intergenic 25.0%
! AATTAGAACATAACTCGTTA+AGG - chr6.4:28767082-28767101 MS.gene000743:intron 25.0%
! ATATAACTGGTAAAAATACC+AGG + chr6.4:28768140-28768159 None:intergenic 25.0%
! CTTTATTACTTGGTACAATT+TGG + chr6.4:28766810-28766829 None:intergenic 25.0%
! GAAACAAATAAAGGAATTCA+AGG + chr6.4:28766603-28766622 None:intergenic 25.0%
! GATGTTACTCTTAAACAATT+TGG - chr6.4:28763707-28763726 MS.gene000743:CDS 25.0%
! TCTTTAATTAAGCTTCTCAA+GGG + chr6.4:28766488-28766507 None:intergenic 25.0%
! TGTTGCATGAAAAGATTTAT+GGG + chr6.4:28764449-28764468 None:intergenic 25.0%
! TTCTTAAATCCAATATAAGG+CGG + chr6.4:28767063-28767082 None:intergenic 25.0%
! TTCTTCATATTTACTAACAG+TGG - chr6.4:28764736-28764755 MS.gene000743:intron 25.0%
! TTGAATTAAAACTAACGGAA+AGG - chr6.4:28765171-28765190 MS.gene000743:intron 25.0%
! TTGTTGCATGAAAAGATTTA+TGG + chr6.4:28764450-28764469 None:intergenic 25.0%
! TTTCTTCTGTGATTAAAGAA+TGG + chr6.4:28766180-28766199 None:intergenic 25.0%
!! AAATTATGGGTTTCCTTTTA+TGG + chr6.4:28764567-28764586 None:intergenic 25.0%
!! AAGATGGAATTTTGCAAATT+TGG - chr6.4:28765685-28765704 MS.gene000743:intron 25.0%
!! AATTATGGGTTTCCTTTTAT+GGG + chr6.4:28764566-28764585 None:intergenic 25.0%
!! AGTTTTTACTCAGGATATAT+AGG + chr6.4:28765461-28765480 None:intergenic 25.0%
!! CTTTTCTAATAACATGAACA+GGG + chr6.4:28763568-28763587 None:intergenic 25.0%
!! GCTTATTGTTTGAAATGAAA+GGG + chr6.4:28764672-28764691 None:intergenic 25.0%
!! TATTTTCCATAAATGGATGA+AGG + chr6.4:28764373-28764392 None:intergenic 25.0%
!! TCTCCTTTAGCATTTTTAAA+AGG + chr6.4:28768164-28768183 None:intergenic 25.0%
!! TGATGTTCTTTCTCTTTTAT+GGG + chr6.4:28764293-28764312 None:intergenic 25.0%
!! TTGATGTTCTTTCTCTTTTA+TGG + chr6.4:28764294-28764313 None:intergenic 25.0%
!! TTTGAAGATTTTGCTTGATT+TGG + chr6.4:28764694-28764713 None:intergenic 25.0%
!! TTTTATTGAACTTAACGGAA+GGG + chr6.4:28764033-28764052 None:intergenic 25.0%
!! TTTTGGATAAAGATTGATGA+AGG + chr6.4:28764270-28764289 None:intergenic 25.0%
!! TTTTTATTGAACTTAACGGA+AGG + chr6.4:28764034-28764053 None:intergenic 25.0%
!!! CTATTTAATTTGACAAAGCA+AGG - chr6.4:28766357-28766376 MS.gene000743:intron 25.0%
!!! GAAAGGGATGTTTTTTTTAA+TGG + chr6.4:28764656-28764675 None:intergenic 25.0%
!!! TCTTGGTTTAATTGCTATTT+TGG - chr6.4:28763908-28763927 MS.gene000743:CDS 25.0%
!!! TTTTAAAAATGCTAAAGGAG+AGG - chr6.4:28768163-28768182 MS.gene000743:CDS 25.0%
AAACTTATGGTTGATTGTAC+TGG - chr6.4:28763653-28763672 MS.gene000743:CDS 30.0%
AAATGAAACCTCTACATTTG+AGG + chr6.4:28767389-28767408 None:intergenic 30.0%
AAATTTGATGAAGGTGAATG+AGG - chr6.4:28765096-28765115 MS.gene000743:intron 30.0%
AAGAAGATGAAGACTTTAAG+TGG + chr6.4:28764161-28764180 None:intergenic 30.0%
ATTTATAACCCGCCTTATAT+TGG - chr6.4:28767051-28767070 MS.gene000743:intron 30.0%
CAAGATTACAAGTTCTTCTT+AGG - chr6.4:28765858-28765877 MS.gene000743:intron 30.0%
CTCATGAAATAACCCATAAA+AGG - chr6.4:28764551-28764570 MS.gene000743:intron 30.0%
GAAGATGATGAAGAAGTTAA+AGG - chr6.4:28765118-28765137 MS.gene000743:intron 30.0%
GAGAAGATGAAGAATTTAAG+TGG + chr6.4:28764139-28764158 None:intergenic 30.0%
GTCTTTAATTAAGCTTCTCA+AGG + chr6.4:28766489-28766508 None:intergenic 30.0%
GTGGTTGTTGCATAAATTAT+GGG + chr6.4:28764580-28764599 None:intergenic 30.0%
TAATTTCCTTCAAAGACGAA+GGG + chr6.4:28767015-28767034 None:intergenic 30.0%
TATTATGTTAATCGCGAAGA+CGG + chr6.4:28767221-28767240 None:intergenic 30.0%
TCAAGTGCAGAAACAAATAA+AGG + chr6.4:28766612-28766631 None:intergenic 30.0%
TCTTAAATCCAATATAAGGC+GGG + chr6.4:28767062-28767081 None:intergenic 30.0%
TCTTTCAACTCAGTAATTAG+TGG - chr6.4:28766859-28766878 MS.gene000743:intron 30.0%
TGCGTTAAAATTGTTATCGT+GGG + chr6.4:28765715-28765734 None:intergenic 30.0%
TGTGGTTGTTGCATAAATTA+TGG + chr6.4:28764581-28764600 None:intergenic 30.0%
TTAATTTCCTTCAAAGACGA+AGG + chr6.4:28767016-28767035 None:intergenic 30.0%
! AAAATCATTTGGAAGTGCAA+GGG + chr6.4:28766103-28766122 None:intergenic 30.0%
! AAAGAATTTGAAGTTGTTGC+AGG - chr6.4:28766909-28766928 MS.gene000743:intron 30.0%
! AAGAATTTGAAGTTGTTGCA+GGG - chr6.4:28766910-28766929 MS.gene000743:intron 30.0%
! AGTTTATCCCATTCACATTT+TGG + chr6.4:28765198-28765217 None:intergenic 30.0%
! CATGAATCAAGTTTTCTTAC+CGG - chr6.4:28765809-28765828 MS.gene000743:intron 30.0%
! GCAGATTTATTGGTAATCAA+GGG - chr6.4:28767984-28768003 MS.gene000743:intron 30.0%
! GCTTTTCTAATAACATGAAC+AGG + chr6.4:28763569-28763588 None:intergenic 30.0%
! GGCTTATTGTTTGAAATGAA+AGG + chr6.4:28764673-28764692 None:intergenic 30.0%
! GTTATTTCATGAGAGTGAAA+AGG + chr6.4:28764544-28764563 None:intergenic 30.0%
! TATTTTTCTCCTCTTTGTGA+TGG + chr6.4:28767196-28767215 None:intergenic 30.0%
! TCTTTCTCTTTTATGGGTTT+TGG + chr6.4:28764287-28764306 None:intergenic 30.0%
! TGATGATGATGATGATATGA+AGG + chr6.4:28764247-28764266 None:intergenic 30.0%
! TTGCTTCTTTCTAGAAAACA+CGG - chr6.4:28765520-28765539 MS.gene000743:intron 30.0%
!! ACTTGAGTTGGAAAAAAAAC+TGG + chr6.4:28768203-28768222 None:intergenic 30.0%
!! GATGGTGATTTTAGTGAAAT+TGG - chr6.4:28766776-28766795 MS.gene000743:intron 30.0%
!! GCTTGTGTTTTATTATCCAT+TGG - chr6.4:28763601-28763620 MS.gene000743:CDS 30.0%
!!! GGATTTAGAGATGTTGATTT+TGG - chr6.4:28768062-28768081 MS.gene000743:CDS 30.0%
!!! TAGAGATGTTGATTTTGGTT+GGG - chr6.4:28768067-28768086 MS.gene000743:CDS 30.0%
!!! TTAGAGATGTTGATTTTGGT+TGG - chr6.4:28768066-28768085 MS.gene000743:CDS 30.0%
!!! TTGTATTTTTGTTGTTGGTG+AGG + chr6.4:28767693-28767712 None:intergenic 30.0%
AAAAATGCTAAAGGAGAGGA+AGG - chr6.4:28768167-28768186 MS.gene000743:CDS 35.0%
AACATTAACTCGCCTACTAT+GGG - chr6.4:28768266-28768285 MS.gene000743:CDS 35.0%
AATTAATAGGGTCAGGAAAG+AGG - chr6.4:28767143-28767162 MS.gene000743:intron 35.0%
AATTTCCTTCAAAGACGAAG+GGG + chr6.4:28767014-28767033 None:intergenic 35.0%
ACTATGGGTGATAGAAAATC+TGG - chr6.4:28768281-28768300 MS.gene000743:CDS 35.0%
AGTAACCATTTGGTACAAGT+AGG + chr6.4:28767833-28767852 None:intergenic 35.0%
AGTACCTGAATAAGCAACAA+TGG + chr6.4:28763812-28763831 None:intergenic 35.0%
ATTCGCCCTTGCAAATTAAT+AGG - chr6.4:28767130-28767149 MS.gene000743:intron 35.0%
CTGCGTTAAAATTGTTATCG+TGG + chr6.4:28765716-28765735 None:intergenic 35.0%
CTTGTACCAAATGGTTACTA+TGG - chr6.4:28767834-28767853 MS.gene000743:intron 35.0%
GAAAGGACCAAAATGTGAAT+GGG - chr6.4:28765188-28765207 MS.gene000743:intron 35.0%
GATGATATGAAGGTTCATGA+AGG + chr6.4:28764237-28764256 None:intergenic 35.0%
GCTTTAGCAGAAATATCTCA+GGG - chr6.4:28767468-28767487 MS.gene000743:intron 35.0%
GTAAAATGACAGAAGTCTTG+TGG - chr6.4:28766386-28766405 MS.gene000743:intron 35.0%
GTTAACCTACTTGTACCAAA+TGG - chr6.4:28767825-28767844 MS.gene000743:intron 35.0%
TACTTATGCGTTTGAGCAAA+TGG + chr6.4:28766147-28766166 None:intergenic 35.0%
TCAAAACACAAGGGTTCAAA+TGG - chr6.4:28764801-28764820 MS.gene000743:intron 35.0%
TCCTACAGTTGTAATTGCAA+CGG + chr6.4:28767877-28767896 None:intergenic 35.0%
TGAACAAATGCACCTCAAAT+TGG + chr6.4:28764934-28764953 None:intergenic 35.0%
TGAGTAAAAACTTCTCGAAG+TGG - chr6.4:28765469-28765488 MS.gene000743:intron 35.0%
TGCAACAACCACAACAATTT+CGG - chr6.4:28764588-28764607 MS.gene000743:intron 35.0%
TGCTTTAGCAGAAATATCTC+AGG - chr6.4:28767467-28767486 MS.gene000743:intron 35.0%
TGTTTATGCCGAAATTGTTG+TGG + chr6.4:28764599-28764618 None:intergenic 35.0%
TTCAACCATACAATGACTGA+CGG - chr6.4:28767420-28767439 MS.gene000743:intron 35.0%
TTCGCCCTTGCAAATTAATA+GGG - chr6.4:28767131-28767150 MS.gene000743:intron 35.0%
TTTATTATCCATTGGCAGGT+AGG - chr6.4:28763609-28763628 MS.gene000743:CDS 35.0%
! AAATCATTTGGAAGTGCAAG+GGG + chr6.4:28766102-28766121 None:intergenic 35.0%
! AATGTGTTTGCTTTGTTGTC+AGG + chr6.4:28767594-28767613 None:intergenic 35.0%
! ACTTCGAGAAGTTTTTACTC+AGG + chr6.4:28765470-28765489 None:intergenic 35.0%
! CACATTTTCCTTAGATGACA+TGG - chr6.4:28767608-28767627 MS.gene000743:intron 35.0%
! GAAAATCATTTGGAAGTGCA+AGG + chr6.4:28766104-28766123 None:intergenic 35.0%
! GATTTTCTATCACCCATAGT+AGG + chr6.4:28768281-28768300 None:intergenic 35.0%
! GGCAGATTTATTGGTAATCA+AGG - chr6.4:28767983-28768002 MS.gene000743:intron 35.0%
! GTATGAGATGATGATGATGA+TGG + chr6.4:28764506-28764525 None:intergenic 35.0%
! TCATCTTCTTCATCCGTTTT+TGG - chr6.4:28764171-28764190 MS.gene000743:CDS 35.0%
! TGCTTCTTTCTAGAAAACAC+GGG - chr6.4:28765521-28765540 MS.gene000743:intron 35.0%
! TGCTTTTCTCTACCAATTTG+AGG - chr6.4:28764919-28764938 MS.gene000743:intron 35.0%
!! ATGATGGATGAAGGAGATAA+AGG + chr6.4:28764330-28764349 None:intergenic 35.0%
!! CTGACCCTATTAATTTGCAA+GGG + chr6.4:28767138-28767157 None:intergenic 35.0%
!! GTGTTTTATTATCCATTGGC+AGG - chr6.4:28763605-28763624 MS.gene000743:CDS 35.0%
!!! AGAGATGTTGATTTTGGTTG+GGG - chr6.4:28768068-28768087 MS.gene000743:CDS 35.0%
!!! TATTTTTGTTGTTGGTGAGG+TGG + chr6.4:28767690-28767709 None:intergenic 35.0%
AAAGACGAAGGGGGAATTAA+AGG + chr6.4:28767004-28767023 None:intergenic 40.0%
AAATCCAGTGCATACGTCAA+CGG + chr6.4:28767915-28767934 None:intergenic 40.0%
AACCAAACCTCATCTCGTAT+TGG + chr6.4:28766951-28766970 None:intergenic 40.0%
ACCAAACCTCATCTCGTATT+GGG + chr6.4:28766950-28766969 None:intergenic 40.0%
ATGAAGGAGAGGATTGAGAT+GGG + chr6.4:28764357-28764376 None:intergenic 40.0%
ATGGTTGATTGTACTGGAGA+AGG - chr6.4:28763659-28763678 MS.gene000743:CDS 40.0%
ATGTTAAAGGCGGGTCATTA+TGG - chr6.4:28764076-28764095 MS.gene000743:CDS 40.0%
ATTTCCTTCAAAGACGAAGG+GGG + chr6.4:28767013-28767032 None:intergenic 40.0%
CAACATTAACTCGCCTACTA+TGG - chr6.4:28768265-28768284 MS.gene000743:CDS 40.0%
CAGAGAAATTCTAAGCGCAA+GGG - chr6.4:28767524-28767543 MS.gene000743:intron 40.0%
CATAACTCGTTAAGGCTTTG+TGG - chr6.4:28767090-28767109 MS.gene000743:intron 40.0%
CATTGAACGCATGTACTCTT+CGG + chr6.4:28767964-28767983 None:intergenic 40.0%
CCTACAGTTGTAATTGCAAC+GGG + chr6.4:28767876-28767895 None:intergenic 40.0%
CCTTGCAAATTAATAGGGTC+AGG - chr6.4:28767136-28767155 MS.gene000743:intron 40.0%
CTGAAATTGTAACCATGTGC+AGG - chr6.4:28767356-28767375 MS.gene000743:intron 40.0%
GAAATCACCATCATCACCAA+TGG + chr6.4:28764978-28764997 None:intergenic 40.0%
GACTATTCTCGGTTTATGAG+AGG + chr6.4:28766076-28766095 None:intergenic 40.0%
GACTTCAGATGCTTCATTGA+TGG - chr6.4:28766758-28766777 MS.gene000743:intron 40.0%
GAGAGAGAGGAAAATTCTAC+TGG - chr6.4:28766048-28766067 MS.gene000743:intron 40.0%
GAGCTTATCTATGATGTTCC+TGG - chr6.4:28763764-28763783 MS.gene000743:CDS 40.0%
GAGTTGAAAGACAATCCATG+TGG + chr6.4:28766850-28766869 None:intergenic 40.0%
GATTTGGATGAAGCAATGAG+AGG - chr6.4:28764854-28764873 MS.gene000743:intron 40.0%
GCATTCGCTGTAGTAAAATG+AGG + chr6.4:28768014-28768033 None:intergenic 40.0%
GCATTTGTTCACTGTTGGAA+AGG - chr6.4:28764943-28764962 MS.gene000743:intron 40.0%
GCGTTACCATAGTAACCATT+TGG + chr6.4:28767843-28767862 None:intergenic 40.0%
GCGTTCAATGGCAGATTTAT+TGG - chr6.4:28767974-28767993 MS.gene000743:intron 40.0%
GGAAAGGACCAAAATGTGAA+TGG - chr6.4:28765187-28765206 MS.gene000743:intron 40.0%
GTAAGTTAATCGTCTCCACA+TGG - chr6.4:28766832-28766851 MS.gene000743:intron 40.0%
TAGAATTTCTCTGCACCACA+CGG + chr6.4:28767517-28767536 None:intergenic 40.0%
TCAACGACAATATCCGATTG+AGG + chr6.4:28766524-28766543 None:intergenic 40.0%
TCCATAAATGGATGAAGGAG+AGG + chr6.4:28764368-28764387 None:intergenic 40.0%
TCCTCTCCTTCATCCATTTA+TGG - chr6.4:28764364-28764383 MS.gene000743:CDS 40.0%
TGGAAGTAGAGAACGAATTG+CGG + chr6.4:28767670-28767689 None:intergenic 40.0%
TTCTTCAGAAGACGACAAAC+AGG - chr6.4:28766676-28766695 MS.gene000743:intron 40.0%
TTGGACCAAAGAAGAAAGCA+TGG + chr6.4:28767638-28767657 None:intergenic 40.0%
TTTAGCACATCTGAAGAACC+AGG + chr6.4:28763785-28763804 None:intergenic 40.0%
! AAAACACAAGCGTTTTCGCA+AGG + chr6.4:28763592-28763611 None:intergenic 40.0%
! AAACACAAGCGTTTTCGCAA+GGG + chr6.4:28763591-28763610 None:intergenic 40.0%
! ATCAAGTTTTCTTACCGGTG+AGG - chr6.4:28765814-28765833 MS.gene000743:intron 40.0%
! CAATGAAGCATCTGAAGTCT+TGG + chr6.4:28766757-28766776 None:intergenic 40.0%
! CACTCCATTGTTGCTTATTC+AGG - chr6.4:28763805-28763824 MS.gene000743:CDS 40.0%
! GTTTGTCGTCTTCTGAAGAA+AGG + chr6.4:28766676-28766695 None:intergenic 40.0%
! TAATTTGCAAGGGCGAATTG+CGG + chr6.4:28767128-28767147 None:intergenic 40.0%
! TTTGCTTTGTTGTCAGGTTC+TGG + chr6.4:28767588-28767607 None:intergenic 40.0%
!! AGGTTCTAGATGCATACATG+GGG - chr6.4:28765834-28765853 MS.gene000743:intron 40.0%
!! CCTGACCCTATTAATTTGCA+AGG + chr6.4:28767139-28767158 None:intergenic 40.0%
!! GAGGTTCTAGATGCATACAT+GGG - chr6.4:28765833-28765852 MS.gene000743:intron 40.0%
!! TGAGGTTCTAGATGCATACA+TGG - chr6.4:28765832-28765851 MS.gene000743:intron 40.0%
!!! GAGATGTTGATTTTGGTTGG+GGG - chr6.4:28768069-28768088 MS.gene000743:CDS 40.0%
AACCTCATCTCGTATTGGGT+AGG + chr6.4:28766946-28766965 None:intergenic 45.0%
AACCTCTCGATGACTTGAGT+TGG + chr6.4:28768215-28768234 None:intergenic 45.0%
AACTCAAGTCATCGAGAGGT+TGG - chr6.4:28768214-28768233 MS.gene000743:CDS 45.0%
AATCCAGTGCATACGTCAAC+GGG + chr6.4:28767914-28767933 None:intergenic 45.0%
AATTCCCCCTTCGTCTTTGA+AGG - chr6.4:28767006-28767025 MS.gene000743:intron 45.0%
AATTTGCAAGGGCGAATTGC+GGG + chr6.4:28767127-28767146 None:intergenic 45.0%
ACCCAATACGAGATGAGGTT+TGG - chr6.4:28766946-28766965 MS.gene000743:intron 45.0%
AGAATTTCTCTGCACCACAC+GGG + chr6.4:28767516-28767535 None:intergenic 45.0%
ATGAGAGGCTAAGAACGAAG+AGG - chr6.4:28764869-28764888 MS.gene000743:intron 45.0%
CATCCTCCATTTCCATGCTT+GGG - chr6.4:28763740-28763759 MS.gene000743:CDS 45.0%
CCCGTTGCAATTACAACTGT+AGG - chr6.4:28767873-28767892 MS.gene000743:intron 45.0%
CGAACACATATTCGTCAACC+TGG + chr6.4:28765632-28765651 None:intergenic 45.0%
CGTTGAGATGTTGCCTCAAT+CGG - chr6.4:28766508-28766527 MS.gene000743:intron 45.0%
CTGATCCGTCAGTCATTGTA+TGG + chr6.4:28767428-28767447 None:intergenic 45.0%
GAGGTGCATTTGTTCACTGT+TGG - chr6.4:28764938-28764957 MS.gene000743:intron 45.0%
GATGAAGGAGAGGATTGAGA+TGG + chr6.4:28764358-28764377 None:intergenic 45.0%
GATTGAGATGGGGAAGATGA+TGG + chr6.4:28764346-28764365 None:intergenic 45.0%
GCAGAGAAATTCTAAGCGCA+AGG - chr6.4:28767523-28767542 MS.gene000743:intron 45.0%
GGAAAGGTTGAAGATGCCAT+TGG - chr6.4:28764959-28764978 MS.gene000743:intron 45.0%
GTAACACGCCTCAAATGTAG+AGG - chr6.4:28767378-28767397 MS.gene000743:intron 45.0%
GTCCACCATGCTTTCTTCTT+TGG - chr6.4:28767630-28767649 MS.gene000743:intron 45.0%
TAGATAAGCTCACCCAAGCA+TGG + chr6.4:28763755-28763774 None:intergenic 45.0%
TCAACCATAAGTTTCCTGCC+AGG + chr6.4:28763647-28763666 None:intergenic 45.0%
TCATCCTCCATTTCCATGCT+TGG - chr6.4:28763739-28763758 MS.gene000743:CDS 45.0%
TGAAGGAGAGGATTGAGATG+GGG + chr6.4:28764356-28764375 None:intergenic 45.0%
TGCTAAAGGAGAGGAAGGTT+TGG - chr6.4:28768172-28768191 MS.gene000743:CDS 45.0%
TTCCAACTCAAGTCATCGAG+AGG - chr6.4:28768210-28768229 MS.gene000743:CDS 45.0%
TTTCTTCTTTGGTCCAACCG+AGG - chr6.4:28767641-28767660 MS.gene000743:intron 45.0%
! CATACAATGACTGACGGATC+AGG - chr6.4:28767426-28767445 MS.gene000743:intron 45.0%
! CGAAGAGTACATGCGTTCAA+TGG - chr6.4:28767962-28767981 MS.gene000743:intron 45.0%
! CGAGAGGTTGGTTAAAGAGT+TGG - chr6.4:28768226-28768245 MS.gene000743:CDS 45.0%
! GACCAAAGAAGAAAGCATGG+TGG + chr6.4:28767635-28767654 None:intergenic 45.0%
! GTATGCATCTAGAACCTCAC+CGG + chr6.4:28765831-28765850 None:intergenic 45.0%
! TGAAGCATCTGAAGTCTTGG+AGG + chr6.4:28766754-28766773 None:intergenic 45.0%
! TGAAGTCTTGGAGGCTCTAA+AGG + chr6.4:28766745-28766764 None:intergenic 45.0%
!! ATGGGGAAGATGATGGATGA+AGG + chr6.4:28764339-28764358 None:intergenic 45.0%
!! ATGGTGGACCATGTCATCTA+AGG + chr6.4:28767619-28767638 None:intergenic 45.0%
!! GAAGATGCCATTGGTGATGA+TGG - chr6.4:28764968-28764987 MS.gene000743:intron 45.0%
!! TATGGAGGATTAGCTAGAGC+AGG - chr6.4:28768101-28768120 MS.gene000743:CDS 45.0%
!! TTTAATAAAAAAAATGTTAA+AGG - chr6.4:28764063-28764082 MS.gene000743:CDS 5.0%
!!! TTTCTAATTTTTTTATTAAA+AGG - chr6.4:28765552-28765571 MS.gene000743:intron 5.0%
AAACCCGTTGACGTATGCAC+TGG - chr6.4:28767908-28767927 MS.gene000743:intron 50.0%
AACCTTCTATCTCACCCGTG+TGG - chr6.4:28767499-28767518 MS.gene000743:intron 50.0%
AGAACGAATTGCGGCTACCT+CGG + chr6.4:28767661-28767680 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr6.4:28765949-28765968 MS.gene000743:intron 50.0%
AGCTCACCCAAGCATGGAAA+TGG + chr6.4:28763749-28763768 None:intergenic 50.0%
AGGTCCTGGCAGGAAACTTA+TGG - chr6.4:28763640-28763659 MS.gene000743:CDS 50.0%
ATCCATTGGCAGGTAGGTTG+AGG - chr6.4:28763615-28763634 MS.gene000743:CDS 50.0%
ATTTGCAAGGGCGAATTGCG+GGG + chr6.4:28767126-28767145 None:intergenic 50.0%
CGATGAGTACACGTCACTCT+TGG + chr6.4:28767555-28767574 None:intergenic 50.0%
CTGTCTGATGTTACACGTGC+TGG - chr6.4:28768041-28768060 MS.gene000743:intron 50.0%
GCAAGGGGCTAGACTATTCT+CGG + chr6.4:28766087-28766106 None:intergenic 50.0%
GCAGGAGATGGTACTAATCC+TGG - chr6.4:28768119-28768138 MS.gene000743:CDS 50.0%
GGTTGGGGGAAAGCTGTTTA+TGG - chr6.4:28768083-28768102 MS.gene000743:CDS 50.0%
GTCCTACCCAATACGAGATG+AGG - chr6.4:28766941-28766960 MS.gene000743:intron 50.0%
TAGGGTCAGGAAAGAGGAGA+AGG - chr6.4:28767149-28767168 MS.gene000743:intron 50.0%
TCACCCAAGCATGGAAATGG+AGG + chr6.4:28763746-28763765 None:intergenic 50.0%
TGGGGGAAAGCTGTTTATGG+AGG - chr6.4:28768086-28768105 MS.gene000743:CDS 50.0%
! CAACCTGGTAGCGAATGTGT+TGG + chr6.4:28765617-28765636 None:intergenic 50.0%
! CCTCTTTGTGATGGTGACGT+GGG + chr6.4:28767187-28767206 None:intergenic 50.0%
! TCCATTGGCAGGTAGGTTGA+GGG - chr6.4:28763616-28763635 MS.gene000743:CDS 50.0%
! TCCTCTTTGTGATGGTGACG+TGG + chr6.4:28767188-28767207 None:intergenic 50.0%
!! GGATTAGCTAGAGCAGGAGA+TGG - chr6.4:28768107-28768126 MS.gene000743:CDS 50.0%
CACCACACGGGTGAGATAGA+AGG + chr6.4:28767504-28767523 None:intergenic 55.0%
CCCACGTCACCATCACAAAG+AGG - chr6.4:28767184-28767203 MS.gene000743:intron 55.0%
CTGCCAACACATTCGCTACC+AGG - chr6.4:28765611-28765630 MS.gene000743:intron 55.0%
GCTGCTGACGTGTTCTTCAG+AGG - chr6.4:28766712-28766731 MS.gene000743:intron 55.0%
TCCCTCAACCTACCTGCCAA+TGG + chr6.4:28763620-28763639 None:intergenic 55.0%
TGAGGCGTGTTACCTGCACA+TGG + chr6.4:28767371-28767390 None:intergenic 55.0%
! TTGGCAGGTAGGTTGAGGGA+AGG - chr6.4:28763620-28763639 MS.gene000743:CDS 55.0%
! TTGTGATGGTGACGTGGGAG+AGG + chr6.4:28767182-28767201 None:intergenic 55.0%
CGAATTGCGGCTACCTCGGT+TGG + chr6.4:28767657-28767676 None:intergenic 60.0%
! GGTAGGTTGAGGGAAGGTCC+TGG - chr6.4:28763626-28763645 MS.gene000743:CDS 60.0%
GGTGACGTGGGAGAGGTTGC+TGG + chr6.4:28767175-28767194 None:intergenic 65.0%
GGTTGAGGGAAGGTCCTGGC+AGG - chr6.4:28763630-28763649 MS.gene000743:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 28763551 28768325 28763551 ID=MS.gene000743
chr6.4 mRNA 28763551 28768325 28763551 ID=MS.gene000743.t1;Parent=MS.gene000743
chr6.4 exon 28768050 28768325 28768050 ID=MS.gene000743.t1.exon1;Parent=MS.gene000743.t1
chr6.4 CDS 28768050 28768325 28768050 ID=cds.MS.gene000743.t1;Parent=MS.gene000743.t1
chr6.4 exon 28763551 28764498 28763551 ID=MS.gene000743.t1.exon2;Parent=MS.gene000743.t1
chr6.4 CDS 28763551 28764498 28763551 ID=cds.MS.gene000743.t1;Parent=MS.gene000743.t1
Gene Sequence

>MS.gene000743

ATGGAAGGCAAAGACCCTGTTCATGTTATTAGAAAAGCCCTTGCGAAAACGCTTGTGTTTTATTATCCATTGGCAGGTAGGTTGAGGGAAGGTCCTGGCAGGAAACTTATGGTTGATTGTACTGGAGAAGGTGTTTTGTTTATTGAAGCTGATGCTGATGTTACTCTTAAACAATTTGGTGATGCACTTCATCCTCCATTTCCATGCTTGGGTGAGCTTATCTATGATGTTCCTGGTTCTTCAGATGTGCTAAACACTCCATTGTTGCTTATTCAGGTACTCTCTCTCTCTCTCTCACACATGTATGTATGTGCGCGCACACGTTATTCATGATTTTATTTTCTTATGATCTTTTTATCTTGGTTTAATTGCTATTTTGGTCCCTTAAATTTATTTTTAGTATCGCTTCGGTCCCTTAAATAAAAATAAAAAAAATTCTGTTTGAGTACTTTAATTTAATTTTCATTACAGTTTTTGGTCCCTTCCGTTAAGTTCAATAAAAAAACGTTAGGTTTAATAAAAAAAATGTTAAAGGCGGGTCATTATGGCATTGCCCAAAAACTTAATTTATTTTCTTCATCTTCTCCACTTAAATTCTTCATCTTCTCCACTTAAAGTCTTCATCTTCTTCATCCGTTTTTGGAAAAACAATTTCTCAATCTTTATCATTTTCTTTATCATCACCTTCATGAACCTTCATATCATCATCATCATCACCTTCATCAATCTTTATCCAAAACCCATAAAAGAGAAAGAACATCAACAACAAAATCAATCCTTTATCTCCTTCATCCATCATCTTCCCCATCTCAATCCTCTCCTTCATCCATTTATGGAAAATAGAAAGAACATCTACAGTAGAAACAACAATTTTGACATCATCATCATGAAGTAACCCATAAATCTTTTCATGCAACAACAACAAAATCAATTAGCAACAACAACAACTTCGCCATCATCATCATCATCTCATACAAAAAACTCATAAATCCTTTTCACTCTCATGAAATAACCCATAAAAGGAAACCCATAATTTATGCAACAACCACAACAATTTCGGCATAAACATTATCTTCTCATAGAAAACCCATAAACAATTTCTCCATTAAAAAAAACATCCCTTTCATTTCAAACAATAAGCCAAATCAAGCAAAATCTTCAAACTCATTTTCTAATTTTTTTTTCTTCTTCATATTTACTAACAGTGGCCAAATCAACAATAATCTTTAAACCAAATAAAAAAACACAATTCAAAACACAAGGGTTCAAATGGATTGAGCTCTGATGATTTCTAAAAGTACAAGATTTGGATGAAGCAATGAGAGGCTAAGAACGAAGAGGAAACTTGAATTTGAAATTCAAACTGTGTGCTTTTCTCTACCAATTTGAGGTGCATTTGTTCACTGTTGGAAAGGTTGAAGATGCCATTGGTGATGATGGTGATTTCTTCTTGTACCAAAGAAAAAGTTGTTTTTGTTTTCATCCCAAAAAAGAAAAGAAATTAAGATGATTTTTTTAGATTGAATTCATAAAAAAAAAATTATGAAATTTGATGAAGGTGAATGAGGAAGATGATGAAGAAGTTAAAGGAAGATTATGATTGTACAAACTCTAACATTTTTGAATTAAAACTAACGGAAAGGACCAAAATGTGAATGGGATAAACTTAAAATACTAAAACAGACTTTTTTTTACTTAAGGGATCAAAGTGATACTAAGTAATAACTTAAGGGACGAAAAGAGAAATTAAGCCTTCAATCTTTAGATATATAGTGATTCATCTATGTTTGCTTATAAACATTATTTTTAAAGTTTGAAAATTCATAAGTAATCGGACGAAAAAGACAAAATTAAAATGAAAACAGATAAATGACCAAATTGTTATATGAAATTAAGTTAAAAATACTCCTATATATCCTGAGTAAAAACTTCTCGAAGTGGTCATGAAACACAATTCAATCAATCGAAGTTGCTTCTTTCTAGAAAACACGGGCGAACATGTTTCTAATTTTTTTATTAAAAGGTTTATCAAATAAATGTAAAATCTAAGGGATGTTATGCTGCCAACACATTCGCTACCAGGTTGACGAATATGTGTTCGTTGTGTCTAGCATTATTTTAAGTTAAAAGACTAAAGATGGAATTTTGCAAATTTGGATCACCCACGATAACAATTTTAACGCAGTCAGAGCATCGAAAGAAAAAAATATACAACAAAAATGAGTTAAAAAATTACGTATGGTAATACATGTGATTCACATGAATCAAGTTTTCTTACCGGTGAGGTTCTAGATGCATACATGGGGACAAGATTACAAGTTCTTCTTAGGGTTTGATACAGAGTATGTATCGAAAATGTGTGTGTGTGTGTGTGTGAGAGAAAGATAGATAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAAATTCTACTGGTTCCTCTCATAAACCGAGAATAGTCTAGCCCCTTGCACTTCCAAATGATTTTCACTATAATCAAACAAGATTACCATTTGCTCAAACGCATAAGTAAGAGAAAATTCCATTCTTTAATCACAGAAGAAAGAGAATTCTACAATCAGACTTTAATCAAATAAATAGATTGTTGTTTTACACTTAATATACAATGAGAGTTGTAACAAATTTAAGTTCAGATGACTTCTGATACTTAAGAAATTCTAAGATATAAAAGTTTGTAAGAATTTCTCAAAGCGTTTGTGCGCTATTTAATTTGACAAAGCAAGGGCATTTGTAAAATGACAGAAGTCTTGTGGTTTTTCTTCAACTGTTCATGTCCTTATATATAAAATACTGAGAGAGTCGTTGTTGAAGAAGTGAACATCAAATTATCCCTTGAGAAGCTTAATTAAAGACGTTGAGATGTTGCCTCAATCGGATATTGTCGTTGAGTAGTCATTCAGAATTCTTTTGCTTCTAATAAAATGATCAGTTTCATTCTATTTTTCCTTGAATTCCTTTATTTGTTTCTGCACTTGATCAGAAGAAGACAAACTATATAACTCTTAGTTTGAAAGCGACCTTTCTTCAGAAGACGACAAACAGGTTCAAAGTCTTTAGCTGCTGACGTGTTCTTCAGAGGCTTGTATCCTTTAGAGCCTCCAAGACTTCAGATGCTTCATTGATGGTGATTTTAGTGAAATTGGCAAGTGCACCAAATTGTACCAAGTAATAAAGTAGTAAGTTAATCGTCTCCACATGGATTGTCTTTCAACTCAGTAATTAGTGGAACTTATTTAGAAAAGCAAATAAATGAAAAGAATTTGAAGTTGTTGCAGGGTTTTAATTGTCCTACCCAATACGAGATGAGGTTTGGTTGATACATATGTTTAACGACGATTATGAAATCCTTTAATTCCCCCTTCGTCTTTGAAGGAAATTAAATTAATAAATCATTCATTTATAACCCGCCTTATATTGGATTTAAGAAATTAGAACATAACTCGTTAAGGCTTTGTGGACATAGCTTTCCCCGCAATTCGCCCTTGCAAATTAATAGGGTCAGGAAAGAGGAGAAGGCCAGCAACCTCTCCCACGTCACCATCACAAAGAGGAGAAAAATACTCCGTCTTCGCGATTAACATAATAAATATGCATTATAGTGTGATTTAATTTAATGAATCAAAATAAAAAGTTTTGAATTGTAACTAGAATATTACAATGACTGATCCTTCATTCGCTCATTAATTATTTCATTCACATGCTGAAATTGTAACCATGTGCAGGTAACACGCCTCAAATGTAGAGGTTTCATTTTTGCTCTTCGTTTCAACCATACAATGACTGACGGATCAGGTATAGTTCAATTCATGAGTGCTTTAGCAGAAATATCTCAGGGTATGAGAAAACCTTCTATCTCACCCGTGTGGTGCAGAGAAATTCTAAGCGCAAGGGATTCACCAAGAGTGACGTGTACTCATCGTGAATACGAACCAGAACCTGACAACAAAGCAAACACATTTTCCTTAGATGACATGGTCCACCATGCTTTCTTCTTTGGTCCAACCGAGGTAGCCGCAATTCGTTCTCTACTTCCACCTCACCAACAACAAAAATACAACAATTTTGAAATCATCACATCATATTTTTGGCGTTGTCGTACACTAGCATTACAACTAGATACTAACGAAGAAGTTCGCATAATCTGCATTGTCGATGCACGTAGCAAATTTGTTAACCTACTTGTACCAAATGGTTACTATGGTAACGCTATAGCGCTTCCCGTTGCAATTACAACTGTAGGAAAACTAATTGAAAACCCGTTGACGTATGCACTGGATTTAGTTAAGAAAGCAAAAGCTAATGTCACCGAAGAGTACATGCGTTCAATGGCAGATTTATTGGTAATCAAGGGTAGACCTCATTTTACTACAGCGAATGCTTGTTTACTGTCTGATGTTACACGTGCTGGATTTAGAGATGTTGATTTTGGTTGGGGGAAAGCTGTTTATGGAGGATTAGCTAGAGCAGGAGATGGTACTAATCCTGGTATTTTTACCAGTTATATACCTTTTAAAAATGCTAAAGGAGAGGAAGGTTTGGTTATACCAGTTTTTTTTCCAACTCAAGTCATCGAGAGGTTGGTTAAAGAGTTGGATAAAGTTCTTAAGAACAACATTAACTCGCCTACTATGGGTGATAGAAAATCTGGAATCATTATTTCTTCGTTGTAG
Protein sequence

>MS.gene000743.t1

MEGKDPVHVIRKALAKTLVFYYPLAGRLREGPGRKLMVDCTGEGVLFIEADADVTLKQFGDALHPPFPCLGELIYDVPGSSDVLNTPLLLIQVTRLKCRGFIFALRFNHTMTDGSGIVQFMSALAEISQGMRKPSISPVWCREILSARDSPRVTCTHREYEPEPDNKANTFSLDDMVHHAFFFGPTEVAAIRSLLPPHQQQKYNNFEIITSYFWRCRTLALQLDTNEEVRIICIVDARSKFVNLLVPNGYYGNAIALPVAITTVGKLIENPLTYALDLVKKAKANVTEEYMRSMADLLVIKGRPHFTTANACLLSDVTRAGFRDVDFGWGKAVYGGLARAGDGTNPGIFTSYIPFKNAKGEEGLVIPVFFPTQVIERLVKELDKVLKNNINSPTMGDRKSGIIISSL