AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38363


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38363.t1 MTR_3g101960 91.924 421 33 1 1 420 36 456 0.0 815
MS.gene38363.t1 MTR_3g102020 86.618 411 53 1 1 409 36 446 0.0 751
MS.gene38363.t1 MTR_3g101970 86.131 411 41 2 1 409 36 432 0.0 731
MS.gene38363.t1 MTR_3g102010 80.918 414 70 3 1 409 37 446 0.0 694
MS.gene38363.t1 MTR_3g101900 69.492 413 116 4 1 409 37 443 0.0 585
MS.gene38363.t1 MTR_3g101930 66.826 419 124 5 1 409 37 450 0.0 577
MS.gene38363.t1 MTR_3g102030 74.528 318 55 2 50 367 29 320 4.30e-174 489
MS.gene38363.t1 MTR_4g015180 40.821 463 206 11 1 409 34 482 3.20e-100 307
MS.gene38363.t1 MTR_3g070170 39.956 453 201 12 1 409 40 465 1.40e-99 305
MS.gene38363.t1 MTR_5g081960 39.655 464 209 11 1 409 34 481 2.09e-97 300
MS.gene38363.t1 MTR_4g094842 39.810 422 227 11 2 409 35 443 1.01e-87 274
MS.gene38363.t1 MTR_8g041770 39.012 405 232 9 8 409 44 436 2.77e-86 270
MS.gene38363.t1 MTR_4g022720 40.148 406 224 9 9 409 39 430 2.65e-85 267
MS.gene38363.t1 MTR_4g094835 38.702 416 233 10 2 409 40 441 1.04e-83 263
MS.gene38363.t1 MTR_4g094838 37.850 428 224 9 2 418 36 432 1.09e-83 263
MS.gene38363.t1 MTR_4g022800 38.889 414 227 10 8 409 38 437 1.27e-83 263
MS.gene38363.t1 MTR_0190s0020 37.931 406 237 8 8 409 43 437 4.76e-83 261
MS.gene38363.t1 MTR_4g022825 37.530 413 232 10 8 409 38 435 4.14e-80 254
MS.gene38363.t1 MTR_4g022670 38.499 413 229 10 8 409 38 436 1.84e-79 252
MS.gene38363.t1 MTR_3g088420 37.990 408 230 10 8 409 38 428 1.03e-78 250
MS.gene38363.t1 MTR_7g026860 37.440 414 229 12 8 409 38 433 7.23e-76 243
MS.gene38363.t1 MTR_4g094828 37.931 406 219 13 7 395 42 431 1.42e-75 243
MS.gene38363.t1 MTR_3g026310 37.288 413 222 12 9 401 39 434 6.93e-73 235
MS.gene38363.t1 MTR_4g022290 35.750 400 226 10 7 393 43 424 2.27e-72 234
MS.gene38363.t1 MTR_4g094832 39.833 359 200 7 65 418 83 430 2.40e-72 233
MS.gene38363.t1 MTR_8g079710 36.919 409 226 16 1 395 36 426 4.61e-67 220
MS.gene38363.t1 MTR_4g022760 37.349 332 186 8 8 328 38 358 2.43e-61 204
MS.gene38363.t1 MTR_6g045553 32.360 445 247 11 2 409 43 470 1.62e-58 198
MS.gene38363.t1 MTR_8g040780 36.406 217 134 3 198 411 14 229 3.73e-40 144
MS.gene38363.t1 MTR_6g016815 29.820 389 197 10 24 409 61 376 7.35e-40 147
MS.gene38363.t1 MTR_8g075610 27.296 392 242 15 32 404 47 414 1.77e-33 130
MS.gene38363.t1 MTR_2g064495 26.221 389 253 14 32 404 56 426 1.19e-30 122
MS.gene38363.t1 MTR_4g007540 27.342 395 242 15 32 404 56 427 1.74e-30 122
MS.gene38363.t1 MTR_7g026850 43.919 148 73 4 8 154 21 159 3.51e-30 115
MS.gene38363.t1 MTR_2g105330 25.964 389 254 14 32 404 56 426 4.22e-30 121
MS.gene38363.t1 MTR_8g096530 28.889 315 193 11 26 326 53 350 7.04e-28 115
MS.gene38363.t1 MTR_3g049150 26.316 418 252 15 20 404 46 440 1.45e-27 114
MS.gene38363.t1 MTR_7g026770 36.723 177 91 3 119 295 132 287 2.41e-27 110
MS.gene38363.t1 MTR_3g098980 27.667 300 196 7 32 322 66 353 8.95e-27 111
MS.gene38363.t1 MTR_4g127650 26.847 406 224 16 32 395 66 440 1.74e-26 111
MS.gene38363.t1 MTR_4g094825 30.263 228 144 4 191 418 179 391 1.31e-25 107
MS.gene38363.t1 MTR_4g094825 31.050 219 121 9 7 208 105 310 1.61e-19 90.1
MS.gene38363.t1 MTR_3g026950 25.701 428 245 18 26 409 48 446 2.39e-25 107
MS.gene38363.t1 MTR_4g097090 27.000 400 232 15 32 395 65 440 6.01e-25 106
MS.gene38363.t1 MTR_6g053810 31.379 290 173 13 33 308 72 349 4.41e-24 104
MS.gene38363.t1 MTR_6g034495 43.220 118 63 3 43 157 45 161 2.30e-23 96.3
MS.gene38363.t1 MTR_8g040760 35.359 181 107 5 8 187 41 212 5.22e-23 97.1
MS.gene38363.t1 MTR_7g114470 26.253 419 260 18 8 400 38 433 4.24e-22 98.6
MS.gene38363.t1 MTR_7g027175 26.257 358 229 13 20 363 56 392 6.40e-22 97.8
MS.gene38363.t1 MTR_5g076700 25.000 412 273 15 8 400 37 431 6.95e-22 97.8
MS.gene38363.t1 MTR_1g040175 28.261 368 225 17 29 383 61 402 1.67e-21 96.7
MS.gene38363.t1 MTR_3g112180 27.378 347 226 11 29 363 58 390 6.31e-21 94.7
MS.gene38363.t1 MTR_7g114550 25.659 417 263 18 8 400 37 430 5.75e-20 92.0
MS.gene38363.t1 MTR_1g040195 24.752 404 266 14 15 400 21 404 7.94e-20 91.7
MS.gene38363.t1 MTR_1g040215 28.866 291 187 11 29 311 61 339 3.17e-19 89.7
MS.gene38363.t1 MTR_1g081660 26.598 391 246 17 29 401 70 437 3.97e-19 89.4
MS.gene38363.t1 MTR_7g086000 26.799 403 233 18 35 397 63 443 6.69e-19 89.0
MS.gene38363.t1 MTR_3g465980 26.471 306 186 12 12 298 49 334 1.20e-18 88.2
MS.gene38363.t1 MTR_7g114560 26.077 418 260 18 8 400 37 430 1.40e-18 87.8
MS.gene38363.t1 MTR_3g071320 26.184 359 205 13 31 359 59 387 5.27e-18 85.9
MS.gene38363.t1 MTR_7g114960 26.010 396 266 12 29 409 60 443 5.42e-18 86.3
MS.gene38363.t1 MTR_6g034485 34.646 127 76 2 169 291 2 125 1.56e-17 79.0
MS.gene38363.t1 MTR_3g465930 27.599 279 174 9 32 295 69 334 1.40e-16 82.0
MS.gene38363.t1 MTR_3g465990 26.384 307 185 13 12 298 49 334 1.52e-16 81.6
MS.gene38363.t1 MTR_4g055170 24.555 281 185 8 32 298 69 336 2.81e-16 80.9
MS.gene38363.t1 MTR_7g084940 24.359 312 205 10 28 324 65 360 5.75e-16 79.7
MS.gene38363.t1 MTR_4g013050 23.441 401 233 15 30 404 51 403 1.13e-15 79.0
MS.gene38363.t1 MTR_7g026830 47.500 80 40 2 65 143 19 97 1.37e-15 72.4
MS.gene38363.t1 MTR_2g015430 25.166 302 202 10 32 322 58 346 1.70e-14 75.5
MS.gene38363.t1 MTR_5g090830 24.149 323 192 15 13 306 49 347 5.21e-14 73.9
MS.gene38363.t1 MTR_5g090810 23.529 323 194 15 13 306 49 347 1.34e-13 72.8
MS.gene38363.t1 MTR_3g028210 24.638 414 258 14 23 400 58 453 2.09e-13 72.0
MS.gene38363.t1 MTR_3g465950 26.277 274 183 7 33 295 69 334 2.25e-13 72.0
MS.gene38363.t1 MTR_2g045540 35.227 88 49 1 206 293 27 106 5.65e-13 65.5
MS.gene38363.t1 MTR_7g085990 25.588 340 206 14 12 327 39 355 1.01e-12 70.1
MS.gene38363.t1 MTR_5g090880 23.784 370 230 16 28 363 63 414 1.20e-12 69.7
MS.gene38363.t1 MTR_3g049140 24.242 198 136 4 206 389 27 224 1.44e-12 67.8
MS.gene38363.t1 MTR_7g085930 25.145 346 208 14 12 331 43 363 3.33e-12 68.6
MS.gene38363.t1 MTR_6g015315 24.038 416 274 16 11 400 42 441 3.73e-12 68.2
MS.gene38363.t1 MTR_0502s0010 29.583 240 145 12 75 301 2 230 5.77e-12 65.9
MS.gene38363.t1 MTR_8g079970 26.087 299 181 13 11 294 41 314 6.71e-12 67.4
MS.gene38363.t1 MTR_7g084910 23.774 265 177 7 28 279 66 318 7.63e-12 67.0
MS.gene38363.t1 MTR_6g015320 23.389 419 272 15 11 400 45 443 8.61e-12 67.0
MS.gene38363.t1 MTR_2g089755 22.613 398 258 14 6 366 49 433 1.36e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38363.t1 AT5G42830 57.452 416 162 4 1 409 37 444 7.73e-177 501
MS.gene38363.t1 AT5G07850 55.961 411 179 2 1 409 38 448 2.79e-171 488
MS.gene38363.t1 AT5G07860 54.831 414 175 5 1 409 38 444 2.92e-159 457
MS.gene38363.t1 AT5G07870 51.537 423 187 3 1 409 38 456 3.13e-156 449
MS.gene38363.t1 AT2G39980 41.485 458 201 9 1 409 36 475 2.35e-105 320
MS.gene38363.t1 AT5G67150 41.587 416 224 12 2 409 37 441 1.74e-94 291
MS.gene38363.t1 AT5G01210 40.716 447 211 10 1 409 34 464 1.99e-93 289
MS.gene38363.t1 AT3G50270 36.993 419 243 12 1 409 36 443 1.43e-77 248
MS.gene38363.t1 AT3G50280 36.817 421 246 12 1 413 34 442 2.90e-74 239
MS.gene38363.t1 AT3G50300 36.476 403 238 9 1 396 34 425 6.08e-74 238
MS.gene38363.t1 AT5G38130 35.980 403 238 11 1 396 54 443 4.37e-68 223
MS.gene38363.t1 AT5G67160 34.963 409 241 11 6 410 41 428 1.62e-67 221
MS.gene38363.t1 AT5G23940 33.255 424 258 10 2 409 33 447 1.06e-59 202
MS.gene38363.t1 AT3G50280 37.987 308 180 7 108 409 6 308 3.81e-55 185
MS.gene38363.t1 AT3G50290 39.689 257 146 6 111 360 15 269 3.88e-46 160
MS.gene38363.t1 AT5G48930 27.536 414 251 16 13 404 41 427 4.62e-32 126
MS.gene38363.t1 AT2G19070 26.969 419 246 16 12 395 42 435 1.46e-28 117
MS.gene38363.t1 AT5G41040 28.205 312 194 9 26 322 63 359 1.94e-27 113
MS.gene38363.t1 AT5G41040 28.013 307 201 7 26 322 79 375 2.42e-27 113
MS.gene38363.t1 AT2G40230 26.933 375 215 13 27 373 54 397 1.12e-21 97.1
MS.gene38363.t1 AT3G48720 25.722 381 243 14 13 384 47 396 1.86e-21 96.3
MS.gene38363.t1 AT5G63560 27.160 324 197 12 13 322 47 345 1.10e-20 94.0
MS.gene38363.t1 AT1G28680 26.510 298 196 11 35 322 65 349 3.99e-19 89.0
MS.gene38363.t1 AT1G28680 26.510 298 196 11 35 322 65 349 5.25e-19 89.4
MS.gene38363.t1 AT1G31490 24.634 410 260 16 22 410 52 433 5.50e-19 89.0
MS.gene38363.t1 AT5G57840 24.877 406 272 14 11 400 39 427 1.23e-18 88.2
MS.gene38363.t1 AT1G78990 23.794 311 191 13 13 306 52 333 1.20e-17 85.1
MS.gene38363.t1 AT1G32910 23.473 311 195 13 13 306 52 336 4.68e-17 83.2
MS.gene38363.t1 AT1G27620 25.000 348 224 11 32 363 58 384 1.33e-15 79.0
MS.gene38363.t1 AT5G16410 22.635 296 182 10 30 306 89 356 3.64e-13 71.6
MS.gene38363.t1 AT2G25150 26.403 303 185 12 25 308 60 343 4.21e-13 71.2
MS.gene38363.t1 AT1G65450 27.419 186 113 6 130 299 1 180 4.50e-12 66.6
MS.gene38363.t1 AT5G39080 21.963 428 275 13 11 400 44 450 8.02e-11 64.3

Find 103 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTCCTAAGGAATATTT+TGG 0.093791 3.2:-84851565 MS.gene38363:CDS
CAAAATGATGTTCCTGTTTA+TGG 0.097445 3.2:-84851910 MS.gene38363:CDS
GAAGATTCTCTCTCTTAAAA+TGG 0.174060 3.2:+84851777 None:intergenic
AATATGTATGGGAATGAATT+TGG 0.204491 3.2:-84851325 MS.gene38363:CDS
TTGAATGGAAGGTTGATAAT+TGG 0.293176 3.2:+84851835 None:intergenic
TCACCAAGGTTTAATATGTA+TGG 0.306646 3.2:-84851337 MS.gene38363:CDS
AATCTTTATCAGCATTAGTT+TGG 0.307683 3.2:-84851675 MS.gene38363:CDS
CTATAGACTCAGCTGGAAAA+TGG 0.328484 3.2:+84851755 None:intergenic
TCTTGAAGAGAAGTCCCTTT+TGG 0.328911 3.2:+84852355 None:intergenic
CTTCCTGCTCCTTCTTTACC+TGG 0.359731 3.2:+84851235 None:intergenic
AGATGGTTTCCACAAGGTTA+TGG 0.364094 3.2:-84851859 MS.gene38363:CDS
TGCTGTTGGTTTAGTGATGT+TGG 0.387777 3.2:+84852330 None:intergenic
AATGGAAAAGTGTGAGAGAA+AGG 0.389200 3.2:+84852271 None:intergenic
GCCGGAGAAAATGATGTTGC+TGG 0.398572 3.2:-84851188 MS.gene38363:CDS
ATCACCAATACAATGATTCA+TGG 0.399519 3.2:+84851978 None:intergenic
TTGGTGATGGAACAGCTTAT+TGG 0.406142 3.2:-84851963 MS.gene38363:CDS
TTTCCATTTCTATCCCCTCT+CGG 0.413697 3.2:-84852256 MS.gene38363:CDS
ACAATGGGTGGAACATCAAT+GGG 0.415916 3.2:+84852108 None:intergenic
GTGGATAGGTTGATGTGAAA+TGG 0.419118 3.2:+84851885 None:intergenic
CAGATGAAGAGTTCAACTTC+TGG 0.424021 3.2:-84851162 MS.gene38363:CDS
ATTTGGAATGGGAAAAGCTT+TGG 0.427618 3.2:-84851308 MS.gene38363:CDS
GGAGAGAACAACTTGCAAAA+TGG 0.431719 3.2:-84851617 MS.gene38363:CDS
ATCAACCTATCCACAATAGA+TGG 0.431811 3.2:-84851876 MS.gene38363:CDS
GACAATGGGTGGAACATCAA+TGG 0.434178 3.2:+84852107 None:intergenic
TATTCAAATCACGGAATTAG+TGG 0.438775 3.2:-84852022 MS.gene38363:CDS
TTCCATTTCTATCCCCTCTC+GGG 0.439902 3.2:-84852255 MS.gene38363:CDS
TGTGAAATGGGACCATAAAC+AGG 0.450206 3.2:+84851898 None:intergenic
TGATCCTTGCACTGTTATGA+TGG 0.455482 3.2:-84851365 MS.gene38363:CDS
ATCTACACACTATATCCAAA+AGG 0.455900 3.2:-84852370 MS.gene38363:CDS
TACAAATAACCGTACGAGAA+TGG 0.458161 3.2:-84851593 MS.gene38363:CDS
AGTGTAAGAATGAGGATCTT+CGG 0.458409 3.2:+84852212 None:intergenic
TCAAAGAACGATTGGACAAT+GGG 0.466912 3.2:+84852093 None:intergenic
CCAAAATATTCCTTAGGAAG+AGG 0.467793 3.2:+84851565 None:intergenic
AAGATTCTCTCTCTTAAAAT+GGG 0.467841 3.2:+84851778 None:intergenic
GAATTCCCAAAATATTCCTT+AGG 0.480035 3.2:+84851559 None:intergenic
TGTTCCATGAATCATTGTAT+TGG 0.480232 3.2:-84851982 MS.gene38363:CDS
AACTCATCGTGATGTTTGAA+TGG 0.482751 3.2:+84851820 None:intergenic
GACCCGAGAGGGGATAGAAA+TGG 0.492196 3.2:+84852253 None:intergenic
AGTTTCGCTATAGACTCAGC+TGG 0.493398 3.2:+84851748 None:intergenic
GAATTGCTGGAGAATGATCT+AGG 0.495485 3.2:-84851502 MS.gene38363:CDS
CACCAAGGTTTAATATGTAT+GGG 0.497351 3.2:-84851336 MS.gene38363:CDS
TTTGTTATCTATTCAAATCA+CGG 0.498414 3.2:-84852031 MS.gene38363:CDS
ATGGAAAAGTGTGAGAGAAA+GGG 0.500507 3.2:+84852272 None:intergenic
TTCCCATACATATTAAACCT+TGG 0.501336 3.2:+84851334 None:intergenic
GTGCACGTCAACTACAACAC+CGG 0.505056 3.2:-84851639 MS.gene38363:CDS
GACAAAGCAGTCAGCCATGA+TGG 0.509313 3.2:-84852066 MS.gene38363:CDS
AGTGTTTGAGTTTGTCCACC+AGG 0.515596 3.2:+84852295 None:intergenic
TATGGGAATGAATTTGGAAT+GGG 0.522099 3.2:-84851319 MS.gene38363:CDS
ACATCATATCCAGGTAAAGA+AGG 0.522329 3.2:-84851244 MS.gene38363:CDS
TGCTGGAGAATGATCTAGGA+TGG 0.523136 3.2:-84851498 MS.gene38363:CDS
GGTTCTCAATGAAGTGCTGT+TGG 0.527425 3.2:+84852316 None:intergenic
TGTCATGATCAAAGAACGAT+TGG 0.527909 3.2:+84852085 None:intergenic
AAATCTGTTTGATAAACAAA+AGG 0.527952 3.2:+84851394 None:intergenic
ATGAATCATTGTATTGGTGA+TGG 0.530598 3.2:-84851976 MS.gene38363:CDS
TGGATAGGTTGATGTGAAAT+GGG 0.531677 3.2:+84851886 None:intergenic
CATCGTGATGTTTGAATGGA+AGG 0.541756 3.2:+84851824 None:intergenic
GGAAAAGTAACATCATATCC+AGG 0.542909 3.2:-84851253 MS.gene38363:CDS
GGATATGCTAACAAATTCGA+TGG 0.547641 3.2:-84851274 MS.gene38363:CDS
GATCCTTGCACTGTTATGAT+GGG 0.548259 3.2:-84851364 MS.gene38363:CDS
TCTTGAAGTGTGTCTTTCGC+CGG 0.548668 3.2:-84851206 MS.gene38363:CDS
TGCGGTGAGTGCTGAAACGA+CGG 0.549616 3.2:-84851530 MS.gene38363:CDS
TATCCAGGTAAAGAAGGAGC+AGG 0.550153 3.2:-84851238 MS.gene38363:CDS
AATAAATCATGATGATAAAG+TGG 0.561465 3.2:-84851449 MS.gene38363:CDS
AAAGCTTTGGCAGTTAGAAG+TGG 0.567341 3.2:-84851295 MS.gene38363:CDS
TCTACACACTATATCCAAAA+GGG 0.567974 3.2:-84852369 MS.gene38363:CDS
ATGATCTAGGATGGGCAGCA+TGG 0.569534 3.2:-84851489 MS.gene38363:CDS
ATCAAAGAACGATTGGACAA+TGG 0.570569 3.2:+84852092 None:intergenic
AATGGAACCACCTCTTCCTA+AGG 0.571584 3.2:-84851575 MS.gene38363:CDS
GTATGGGAATGAATTTGGAA+TGG 0.573460 3.2:-84851320 MS.gene38363:CDS
ACAGCACTTCATTGAGAACC+TGG 0.575720 3.2:-84852313 MS.gene38363:CDS
GAGTGCTGAAACGACGGTGG+GGG 0.585490 3.2:-84851524 MS.gene38363:CDS
ACGAAAACAGTGTAAGAATG+AGG 0.585728 3.2:+84852204 None:intergenic
CACAATAGATGGTTTCCACA+AGG 0.586552 3.2:-84851865 MS.gene38363:CDS
GAGGTGGTTCCATTCTCGTA+CGG 0.591000 3.2:+84851584 None:intergenic
AAATATTCCTTAGGAAGAGG+TGG 0.594958 3.2:+84851568 None:intergenic
TGCGTAGGTCGGTTGAAGAG+TGG 0.594966 3.2:-84851426 MS.gene38363:CDS
TGCACGTCAACTACAACACC+GGG 0.595711 3.2:-84851638 MS.gene38363:CDS
GTGAGTGCTGAAACGACGGT+GGG 0.603452 3.2:-84851526 MS.gene38363:CDS
AGTAACAAGACGACCCGAGA+GGG 0.603722 3.2:+84852242 None:intergenic
ATACTCAAAGACTAGAACAT+GGG 0.612835 3.2:+84851131 None:intergenic
TGAGTGCTGAAACGACGGTG+GGG 0.614267 3.2:-84851525 MS.gene38363:CDS
CTACCCATCATAACAGTGCA+AGG 0.614444 3.2:+84851361 None:intergenic
CATACTCAAAGACTAGAACA+TGG 0.617067 3.2:+84851130 None:intergenic
GGAAACCATCTATTGTGGAT+AGG 0.621301 3.2:+84851871 None:intergenic
GATATAGTGTGTAGATAACA+TGG 0.622938 3.2:+84852377 None:intergenic
AAGACAAGGTATGACCATCA+TGG 0.623830 3.2:+84852052 None:intergenic
GTCGATTGCAACAACAGTCG+CGG 0.624393 3.2:-84852183 MS.gene38363:CDS
GCTGGAGAATGATCTAGGAT+GGG 0.628974 3.2:-84851497 MS.gene38363:CDS
AAGAACGATTGGACAATGGG+TGG 0.640899 3.2:+84852096 None:intergenic
ATGATGATAAAGTGGTGCGT+AGG 0.641507 3.2:-84851441 MS.gene38363:CDS
ATAATTGGACCATAACCTTG+TGG 0.645522 3.2:+84851850 None:intergenic
TATAGCGAAACTGAAAGCAA+AGG 0.650352 3.2:-84851737 MS.gene38363:CDS
CTTGTGGAAACCATCTATTG+TGG 0.654333 3.2:+84851866 None:intergenic
TGATAAAGTGGTGCGTAGGT+CGG 0.663573 3.2:-84851437 MS.gene38363:CDS
CAAATCACGGAATTAGTGGA+CGG 0.665273 3.2:-84852018 MS.gene38363:CDS
GGTGAGTGCTGAAACGACGG+TGG 0.672156 3.2:-84851527 MS.gene38363:CDS
GTAACAAGACGACCCGAGAG+GGG 0.682817 3.2:+84852243 None:intergenic
CAATGGGTGGAACATCAATG+GGG 0.692928 3.2:+84852109 None:intergenic
TTGAATAGATAACAAAGACA+AGG 0.704301 3.2:+84852038 None:intergenic
TTATGATGGGTAGTTCACCA+AGG 0.706961 3.2:-84851351 MS.gene38363:CDS
GCACTTCATTGAGAACCTGG+TGG 0.715971 3.2:-84852310 MS.gene38363:CDS
AATGGGTGGAACATCAATGG+GGG 0.729082 3.2:+84852110 None:intergenic
TAGTAACAAGACGACCCGAG+AGG 0.734460 3.2:+84852241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTGTTTGATAAACAAA+AGG + chr3.2:84852119-84852138 None:intergenic 20.0%
!! AATAAATCATGATGATAAAG+TGG - chr3.2:84852061-84852080 MS.gene38363:CDS 20.0%
!!! TTTGTTATCTATTCAAATCA+CGG - chr3.2:84851479-84851498 MS.gene38363:CDS 20.0%
! AAGATTCTCTCTCTTAAAAT+GGG + chr3.2:84851735-84851754 None:intergenic 25.0%
! AATATGTATGGGAATGAATT+TGG - chr3.2:84852185-84852204 MS.gene38363:CDS 25.0%
! AATCTTTATCAGCATTAGTT+TGG - chr3.2:84851835-84851854 MS.gene38363:CDS 25.0%
! TTGAATAGATAACAAAGACA+AGG + chr3.2:84851475-84851494 None:intergenic 25.0%
ATCACCAATACAATGATTCA+TGG + chr3.2:84851535-84851554 None:intergenic 30.0%
ATCTACACACTATATCCAAA+AGG - chr3.2:84851140-84851159 MS.gene38363:CDS 30.0%
CAAAATGATGTTCCTGTTTA+TGG - chr3.2:84851600-84851619 MS.gene38363:CDS 30.0%
CACCAAGGTTTAATATGTAT+GGG - chr3.2:84852174-84852193 MS.gene38363:CDS 30.0%
GAAGATTCTCTCTCTTAAAA+TGG + chr3.2:84851736-84851755 None:intergenic 30.0%
GAATTCCCAAAATATTCCTT+AGG + chr3.2:84851954-84851973 None:intergenic 30.0%
TATTCAAATCACGGAATTAG+TGG - chr3.2:84851488-84851507 MS.gene38363:CDS 30.0%
TCACCAAGGTTTAATATGTA+TGG - chr3.2:84852173-84852192 MS.gene38363:CDS 30.0%
TCTACACACTATATCCAAAA+GGG - chr3.2:84851141-84851160 MS.gene38363:CDS 30.0%
TGTTCCATGAATCATTGTAT+TGG - chr3.2:84851528-84851547 MS.gene38363:CDS 30.0%
TTCCCATACATATTAAACCT+TGG + chr3.2:84852179-84852198 None:intergenic 30.0%
! ATGAATCATTGTATTGGTGA+TGG - chr3.2:84851534-84851553 MS.gene38363:CDS 30.0%
! CTCTTCCTAAGGAATATTTT+GGG - chr3.2:84851946-84851965 MS.gene38363:CDS 30.0%
! TATGGGAATGAATTTGGAAT+GGG - chr3.2:84852191-84852210 MS.gene38363:CDS 30.0%
!! TTGAATGGAAGGTTGATAAT+TGG + chr3.2:84851678-84851697 None:intergenic 30.0%
AAATATTCCTTAGGAAGAGG+TGG + chr3.2:84851945-84851964 None:intergenic 35.0%
AACTCATCGTGATGTTTGAA+TGG + chr3.2:84851693-84851712 None:intergenic 35.0%
ACATCATATCCAGGTAAAGA+AGG - chr3.2:84852266-84852285 MS.gene38363:CDS 35.0%
ACGAAAACAGTGTAAGAATG+AGG + chr3.2:84851309-84851328 None:intergenic 35.0%
AGTGTAAGAATGAGGATCTT+CGG + chr3.2:84851301-84851320 None:intergenic 35.0%
ATAATTGGACCATAACCTTG+TGG + chr3.2:84851663-84851682 None:intergenic 35.0%
ATCAAAGAACGATTGGACAA+TGG + chr3.2:84851421-84851440 None:intergenic 35.0%
ATCAACCTATCCACAATAGA+TGG - chr3.2:84851634-84851653 MS.gene38363:CDS 35.0%
CCAAAATATTCCTTAGGAAG+AGG + chr3.2:84851948-84851967 None:intergenic 35.0%
GGAAAAGTAACATCATATCC+AGG - chr3.2:84852257-84852276 MS.gene38363:CDS 35.0%
GGATATGCTAACAAATTCGA+TGG - chr3.2:84852236-84852255 MS.gene38363:CDS 35.0%
GTATGGGAATGAATTTGGAA+TGG - chr3.2:84852190-84852209 MS.gene38363:CDS 35.0%
TACAAATAACCGTACGAGAA+TGG - chr3.2:84851917-84851936 MS.gene38363:CDS 35.0%
TATAGCGAAACTGAAAGCAA+AGG - chr3.2:84851773-84851792 MS.gene38363:CDS 35.0%
TCAAAGAACGATTGGACAAT+GGG + chr3.2:84851420-84851439 None:intergenic 35.0%
TGTCATGATCAAAGAACGAT+TGG + chr3.2:84851428-84851447 None:intergenic 35.0%
! AATGGAAAAGTGTGAGAGAA+AGG + chr3.2:84851242-84851261 None:intergenic 35.0%
! ATGGAAAAGTGTGAGAGAAA+GGG + chr3.2:84851241-84851260 None:intergenic 35.0%
! ATTTGGAATGGGAAAAGCTT+TGG - chr3.2:84852202-84852221 MS.gene38363:CDS 35.0%
! CCTCTTCCTAAGGAATATTT+TGG - chr3.2:84851945-84851964 MS.gene38363:CDS 35.0%
!! TGGATAGGTTGATGTGAAAT+GGG + chr3.2:84851627-84851646 None:intergenic 35.0%
!! TTTTGGGAATTCACTTCATG+CGG - chr3.2:84851962-84851981 MS.gene38363:CDS 35.0%
AAGACAAGGTATGACCATCA+TGG + chr3.2:84851461-84851480 None:intergenic 40.0%
ACAATGGGTGGAACATCAAT+GGG + chr3.2:84851405-84851424 None:intergenic 40.0%
AGATGGTTTCCACAAGGTTA+TGG - chr3.2:84851651-84851670 MS.gene38363:CDS 40.0%
ATGATGATAAAGTGGTGCGT+AGG - chr3.2:84852069-84852088 MS.gene38363:CDS 40.0%
CAAATCACGGAATTAGTGGA+CGG - chr3.2:84851492-84851511 MS.gene38363:CDS 40.0%
CACAATAGATGGTTTCCACA+AGG - chr3.2:84851645-84851664 MS.gene38363:CDS 40.0%
CAGATGAAGAGTTCAACTTC+TGG - chr3.2:84852348-84852367 MS.gene38363:CDS 40.0%
CATCGTGATGTTTGAATGGA+AGG + chr3.2:84851689-84851708 None:intergenic 40.0%
CTATAGACTCAGCTGGAAAA+TGG + chr3.2:84851758-84851777 None:intergenic 40.0%
CTTGTGGAAACCATCTATTG+TGG + chr3.2:84851647-84851666 None:intergenic 40.0%
GAATTGCTGGAGAATGATCT+AGG - chr3.2:84852008-84852027 MS.gene38363:CDS 40.0%
GATCCTTGCACTGTTATGAT+GGG - chr3.2:84852146-84852165 MS.gene38363:CDS 40.0%
GGAAACCATCTATTGTGGAT+AGG + chr3.2:84851642-84851661 None:intergenic 40.0%
GGAGAGAACAACTTGCAAAA+TGG - chr3.2:84851893-84851912 MS.gene38363:CDS 40.0%
TGATCCTTGCACTGTTATGA+TGG - chr3.2:84852145-84852164 MS.gene38363:CDS 40.0%
TGTGAAATGGGACCATAAAC+AGG + chr3.2:84851615-84851634 None:intergenic 40.0%
TTTCCATTTCTATCCCCTCT+CGG - chr3.2:84851254-84851273 MS.gene38363:CDS 40.0%
! AAAGCTTTGGCAGTTAGAAG+TGG - chr3.2:84852215-84852234 MS.gene38363:CDS 40.0%
! TCCAGCAACATCATTTTCTC+CGG + chr3.2:84852326-84852345 None:intergenic 40.0%
! TCTTGAAGAGAAGTCCCTTT+TGG + chr3.2:84851158-84851177 None:intergenic 40.0%
! TTTTGCAAGTTGTTCTCTCC+CGG + chr3.2:84851893-84851912 None:intergenic 40.0%
!! GTGGATAGGTTGATGTGAAA+TGG + chr3.2:84851628-84851647 None:intergenic 40.0%
!! TGCTGTTGGTTTAGTGATGT+TGG + chr3.2:84851183-84851202 None:intergenic 40.0%
!! TTAGTGGACGGTGTTTTCAT+TGG - chr3.2:84851504-84851523 MS.gene38363:CDS 40.0%
!! TTATGATGGGTAGTTCACCA+AGG - chr3.2:84852159-84852178 MS.gene38363:CDS 40.0%
!! TTGGTGATGGAACAGCTTAT+TGG - chr3.2:84851547-84851566 MS.gene38363:CDS 40.0%
AAGAACGATTGGACAATGGG+TGG + chr3.2:84851417-84851436 None:intergenic 45.0%
AATGGAACCACCTCTTCCTA+AGG - chr3.2:84851935-84851954 MS.gene38363:CDS 45.0%
AATGGGTGGAACATCAATGG+GGG + chr3.2:84851403-84851422 None:intergenic 45.0%
ACAGCACTTCATTGAGAACC+TGG - chr3.2:84851197-84851216 MS.gene38363:CDS 45.0%
AGTTTCGCTATAGACTCAGC+TGG + chr3.2:84851765-84851784 None:intergenic 45.0%
CAATGGGTGGAACATCAATG+GGG + chr3.2:84851404-84851423 None:intergenic 45.0%
CTACCCATCATAACAGTGCA+AGG + chr3.2:84852152-84852171 None:intergenic 45.0%
GACAATGGGTGGAACATCAA+TGG + chr3.2:84851406-84851425 None:intergenic 45.0%
GGGGGTGAGGATATCATTTA+TGG + chr3.2:84851385-84851404 None:intergenic 45.0%
TATCCAGGTAAAGAAGGAGC+AGG - chr3.2:84852272-84852291 MS.gene38363:CDS 45.0%
TCTTGAAGTGTGTCTTTCGC+CGG - chr3.2:84852304-84852323 MS.gene38363:CDS 45.0%
TGATAAAGTGGTGCGTAGGT+CGG - chr3.2:84852073-84852092 MS.gene38363:CDS 45.0%
TGCTGGAGAATGATCTAGGA+TGG - chr3.2:84852012-84852031 MS.gene38363:CDS 45.0%
TTCCATTTCTATCCCCTCTC+GGG - chr3.2:84851255-84851274 MS.gene38363:CDS 45.0%
! AGTGTTTGAGTTTGTCCACC+AGG + chr3.2:84851218-84851237 None:intergenic 45.0%
! GCTGGAGAATGATCTAGGAT+GGG - chr3.2:84852013-84852032 MS.gene38363:CDS 45.0%
!! GGTTCTCAATGAAGTGCTGT+TGG + chr3.2:84851197-84851216 None:intergenic 45.0%
AGTAACAAGACGACCCGAGA+GGG + chr3.2:84851271-84851290 None:intergenic 50.0%
CTTCCTGCTCCTTCTTTACC+TGG + chr3.2:84852278-84852297 None:intergenic 50.0%
GACAAAGCAGTCAGCCATGA+TGG - chr3.2:84851444-84851463 MS.gene38363:CDS 50.0%
GAGGTGGTTCCATTCTCGTA+CGG + chr3.2:84851929-84851948 None:intergenic 50.0%
GCACTTCATTGAGAACCTGG+TGG - chr3.2:84851200-84851219 MS.gene38363:CDS 50.0%
GCCGGAGAAAATGATGTTGC+TGG - chr3.2:84852322-84852341 MS.gene38363:CDS 50.0%
GTCGATTGCAACAACAGTCG+CGG - chr3.2:84851327-84851346 MS.gene38363:CDS 50.0%
GTGCACGTCAACTACAACAC+CGG - chr3.2:84851871-84851890 MS.gene38363:CDS 50.0%
TAGTAACAAGACGACCCGAG+AGG + chr3.2:84851272-84851291 None:intergenic 50.0%
TGCACGTCAACTACAACACC+GGG - chr3.2:84851872-84851891 MS.gene38363:CDS 50.0%
! ATGATCTAGGATGGGCAGCA+TGG - chr3.2:84852021-84852040 MS.gene38363:CDS 50.0%
GACCCGAGAGGGGATAGAAA+TGG + chr3.2:84851260-84851279 None:intergenic 55.0%
GTAACAAGACGACCCGAGAG+GGG + chr3.2:84851270-84851289 None:intergenic 55.0%
GTGGAACATCAATGGGGGTG+AGG + chr3.2:84851398-84851417 None:intergenic 55.0%
TGCGTAGGTCGGTTGAAGAG+TGG - chr3.2:84852084-84852103 MS.gene38363:CDS 55.0%
!! GTGAGTGCTGAAACGACGGT+GGG - chr3.2:84851984-84852003 MS.gene38363:CDS 55.0%
!! TGAGTGCTGAAACGACGGTG+GGG - chr3.2:84851985-84852004 MS.gene38363:CDS 55.0%
!! TGCGGTGAGTGCTGAAACGA+CGG - chr3.2:84851980-84851999 MS.gene38363:CDS 55.0%
AACGACGGTGGGGGAATTGC+TGG - chr3.2:84851995-84852014 MS.gene38363:CDS 60.0%
!! GAGTGCTGAAACGACGGTGG+GGG - chr3.2:84851986-84852005 MS.gene38363:CDS 60.0%
!! GGTGAGTGCTGAAACGACGG+TGG - chr3.2:84851983-84852002 MS.gene38363:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 84851135 84852397 84851135 ID=MS.gene38363
chr3.2 mRNA 84851135 84852397 84851135 ID=MS.gene38363.t1;Parent=MS.gene38363
chr3.2 exon 84851135 84852397 84851135 ID=MS.gene38363.t1.exon1;Parent=MS.gene38363.t1
chr3.2 CDS 84851135 84852397 84851135 ID=cds.MS.gene38363.t1;Parent=MS.gene38363.t1
Gene Sequence

>MS.gene38363

ATGTTATCTACACACTATATCCAAAAGGGACTTCTCTTCAAGAAACCAACATCACTAAACCAACAGCACTTCATTGAGAACCTGGTGGACAAACTCAAACACTCCCTTTCTCTCACACTTTTCCATTTCTATCCCCTCTCGGGTCGTCTTGTTACTAAAAAATCCGAAGATCCTCATTCTTACACTGTTTTCGTCGATTGCAACAACAGTCGCGGAGCTAAATTTATTCATGCAACTTTAGATATCACCATAAATGATATCCTCACCCCCATTGATGTTCCACCCATTGTCCAATCGTTCTTTGATCATGACAAAGCAGTCAGCCATGATGGTCATACCTTGTCTTTGTTATCTATTCAAATCACGGAATTAGTGGACGGTGTTTTCATTGGTTGTTCCATGAATCATTGTATTGGTGATGGAACAGCTTATTGGAATTTCTTCAACACATTTTCTGAGATATTTCAAAATGATGTTCCTGTTTATGGTCCCATTTCACATCAACCTATCCACAATAGATGGTTTCCACAAGGTTATGGTCCAATTATCAACCTTCCATTCAAACATCACGATGAGTTTGTTCACAGATATGAAACACCCATTTTAAGAGAGAGAATCTTCCATTTTCCAGCTGAGTCTATAGCGAAACTGAAAGCAAAGGCAAATGAAGTGTCTAATACAAGCAAAATTTCTTCGTTTCAATCTTTATCAGCATTAGTTTGGAGATCTATAACTCGTGCACGTCAACTACAACACCGGGAGAGAACAACTTGCAAAATGGCTACAAATAACCGTACGAGAATGGAACCACCTCTTCCTAAGGAATATTTTGGGAATTCACTTCATGCGGTGAGTGCTGAAACGACGGTGGGGGAATTGCTGGAGAATGATCTAGGATGGGCAGCATGGAAAATTCATCTAGCTGTAATAAATCATGATGATAAAGTGGTGCGTAGGTCGGTTGAAGAGTGGTTTCGTTCTCCTTTTGTTTATCAAACAGATTTGTTTTTTGATCCTTGCACTGTTATGATGGGTAGTTCACCAAGGTTTAATATGTATGGGAATGAATTTGGAATGGGAAAAGCTTTGGCAGTTAGAAGTGGATATGCTAACAAATTCGATGGAAAAGTAACATCATATCCAGGTAAAGAAGGAGCAGGAAGCATTGATCTTGAAGTGTGTCTTTCGCCGGAGAAAATGATGTTGCTGGAAACAGATGAAGAGTTCAACTTCTGGTGTTTGCTCCCATGTTCTAGTCTTTGA

Protein sequence

>MS.gene38363.t1

MLSTHYIQKGLLFKKPTSLNQQHFIENLVDKLKHSLSLTLFHFYPLSGRLVTKKSEDPHSYTVFVDCNNSRGAKFIHATLDITINDILTPIDVPPIVQSFFDHDKAVSHDGHTLSLLSIQITELVDGVFIGCSMNHCIGDGTAYWNFFNTFSEIFQNDVPVYGPISHQPIHNRWFPQGYGPIINLPFKHHDEFVHRYETPILRERIFHFPAESIAKLKAKANEVSNTSKISSFQSLSALVWRSITRARQLQHRERTTCKMATNNRTRMEPPLPKEYFGNSLHAVSAETTVGELLENDLGWAAWKIHLAVINHDDKVVRRSVEEWFRSPFVYQTDLFFDPCTVMMGSSPRFNMYGNEFGMGKALAVRSGYANKFDGKVTSYPGKEGAGSIDLEVCLSPEKMMLLETDEEFNFWCLLPCSSL