AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069321


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069321.t1 MTR_3g101970 90.708 452 27 2 1 451 1 438 0.0 849
MS.gene069321.t1 MTR_3g101960 87.865 445 54 0 1 445 1 445 0.0 831
MS.gene069321.t1 MTR_3g102020 84.683 457 69 1 1 456 1 457 0.0 812
MS.gene069321.t1 MTR_3g102010 80.000 460 84 2 1 456 2 457 0.0 762
MS.gene069321.t1 MTR_3g101900 67.033 455 139 4 1 451 2 449 0.0 617
MS.gene069321.t1 MTR_3g101930 66.000 450 139 5 9 449 10 454 0.0 602
MS.gene069321.t1 MTR_3g102030 72.642 318 61 2 86 403 29 320 2.14e-168 476
MS.gene069321.t1 MTR_4g015180 39.087 504 236 12 1 450 1 487 2.66e-97 301
MS.gene069321.t1 MTR_3g070170 38.066 486 227 13 5 446 11 466 1.24e-96 299
MS.gene069321.t1 MTR_5g081960 38.523 501 234 12 1 446 1 482 8.88e-96 297
MS.gene069321.t1 MTR_4g094842 39.301 458 250 11 3 446 1 444 3.91e-93 289
MS.gene069321.t1 MTR_4g022825 38.688 442 244 9 20 450 15 440 2.27e-89 279
MS.gene069321.t1 MTR_8g041770 39.529 425 241 9 29 450 30 441 7.27e-89 278
MS.gene069321.t1 MTR_4g022800 38.149 443 245 11 21 450 16 442 3.55e-88 276
MS.gene069321.t1 MTR_0190s0020 38.642 427 246 8 28 450 28 442 3.55e-88 276
MS.gene069321.t1 MTR_4g022720 39.080 435 245 9 21 450 16 435 8.05e-86 270
MS.gene069321.t1 MTR_4g094835 36.980 457 260 10 3 446 1 442 1.38e-85 270
MS.gene069321.t1 MTR_3g088420 38.621 435 241 10 23 450 18 433 3.24e-85 268
MS.gene069321.t1 MTR_4g022670 37.868 441 248 9 21 450 16 441 7.25e-85 267
MS.gene069321.t1 MTR_7g026860 36.961 441 249 10 21 450 16 438 1.38e-83 264
MS.gene069321.t1 MTR_4g094838 36.916 428 235 8 28 446 27 428 8.75e-82 259
MS.gene069321.t1 MTR_3g026310 38.182 440 239 11 29 450 24 448 5.73e-81 258
MS.gene069321.t1 MTR_4g094828 36.481 466 254 14 8 451 6 451 8.53e-81 257
MS.gene069321.t1 MTR_4g022290 36.429 420 235 10 23 429 24 424 4.85e-78 250
MS.gene069321.t1 MTR_8g079710 37.296 429 228 15 21 431 21 426 3.49e-73 237
MS.gene069321.t1 MTR_4g094832 39.193 347 200 5 105 446 86 426 7.85e-69 225
MS.gene069321.t1 MTR_4g022760 32.880 441 226 10 21 450 16 397 1.03e-64 214
MS.gene069321.t1 MTR_6g045553 31.405 484 271 12 5 449 13 474 2.39e-61 207
MS.gene069321.t1 MTR_6g016815 31.163 430 214 12 23 450 32 381 2.62e-48 170
MS.gene069321.t1 MTR_8g040780 38.073 218 130 4 240 453 20 236 7.24e-41 146
MS.gene069321.t1 MTR_4g007540 26.269 453 288 16 6 440 3 427 2.98e-34 133
MS.gene069321.t1 MTR_8g075610 28.856 402 223 15 68 440 47 414 1.23e-32 128
MS.gene069321.t1 MTR_2g064495 26.781 407 270 13 48 440 34 426 3.33e-31 124
MS.gene069321.t1 MTR_2g105330 26.536 407 271 13 48 440 34 426 1.00e-30 123
MS.gene069321.t1 MTR_8g040760 36.406 217 127 6 8 223 6 212 5.29e-30 116
MS.gene069321.t1 MTR_7g026850 43.333 150 74 4 42 190 20 159 9.93e-30 114
MS.gene069321.t1 MTR_8g096530 30.159 315 189 11 62 362 53 350 3.14e-28 116
MS.gene069321.t1 MTR_3g049150 28.019 414 230 18 56 431 46 429 3.98e-27 113
MS.gene069321.t1 MTR_7g026770 37.640 178 90 3 155 332 132 288 6.59e-27 110
MS.gene069321.t1 MTR_3g098980 29.967 307 187 12 68 362 66 356 3.42e-26 110
MS.gene069321.t1 MTR_4g127650 26.292 445 262 17 19 431 30 440 1.14e-25 109
MS.gene069321.t1 MTR_6g034495 44.915 118 61 3 79 193 45 161 4.74e-24 98.6
MS.gene069321.t1 MTR_4g094825 38.667 150 81 2 301 450 253 391 8.03e-24 103
MS.gene069321.t1 MTR_4g094825 33.846 195 112 6 29 220 92 272 1.39e-21 96.7
MS.gene069321.t1 MTR_1g040175 28.883 367 224 17 65 419 61 402 1.27e-23 103
MS.gene069321.t1 MTR_6g053810 31.488 289 174 12 69 344 72 349 3.37e-23 102
MS.gene069321.t1 MTR_4g097090 24.330 448 275 16 29 440 30 449 2.60e-22 99.4
MS.gene069321.t1 MTR_3g112180 27.666 347 225 11 65 399 58 390 4.12e-22 99.0
MS.gene069321.t1 MTR_5g076700 24.837 459 291 17 2 436 3 431 6.07e-22 98.6
MS.gene069321.t1 MTR_3g026950 25.432 405 248 16 62 431 48 433 6.56e-22 98.2
MS.gene069321.t1 MTR_7g114470 25.397 441 281 18 33 447 28 446 1.45e-20 94.4
MS.gene069321.t1 MTR_1g040195 24.762 420 277 16 50 450 21 420 1.83e-20 94.0
MS.gene069321.t1 MTR_1g081660 26.923 390 246 15 65 437 70 437 5.91e-20 92.4
MS.gene069321.t1 MTR_7g027175 28.840 319 200 11 56 362 56 359 1.78e-19 90.9
MS.gene069321.t1 MTR_7g114550 25.727 447 276 20 30 447 24 443 2.62e-19 90.5
MS.gene069321.t1 MTR_7g114520 26.151 478 288 19 2 448 4 447 4.81e-19 89.7
MS.gene069321.t1 MTR_1g040215 27.011 348 217 15 13 347 16 339 5.80e-19 89.4
MS.gene069321.t1 MTR_7g086000 26.768 396 242 17 71 433 63 443 1.00e-18 88.6
MS.gene069321.t1 MTR_7g014160 25.214 468 293 20 15 441 16 467 1.29e-18 88.6
MS.gene069321.t1 MTR_3g465980 25.575 348 217 13 6 334 10 334 1.85e-18 87.8
MS.gene069321.t1 MTR_7g114960 25.945 397 267 11 65 446 60 444 8.20e-18 85.9
MS.gene069321.t1 MTR_6g034485 33.065 124 82 1 205 327 2 125 1.49e-17 79.0
MS.gene069321.t1 MTR_1g040315 27.362 307 196 11 30 325 23 313 5.16e-17 83.2
MS.gene069321.t1 MTR_4g055170 24.555 281 185 8 68 334 69 336 8.46e-17 82.8
MS.gene069321.t1 MTR_6g015320 25.799 407 251 15 60 436 58 443 1.16e-16 82.4
MS.gene069321.t1 MTR_7g084940 25.524 286 183 10 64 334 65 335 1.24e-16 82.4
MS.gene069321.t1 MTR_3g465990 25.145 346 221 13 6 334 10 334 1.42e-16 82.0
MS.gene069321.t1 MTR_3g049140 27.451 204 130 5 242 431 27 226 4.90e-16 78.2
MS.gene069321.t1 MTR_7g013850 24.823 423 252 16 30 402 30 436 6.76e-16 80.1
MS.gene069321.t1 MTR_4g013050 24.688 401 220 16 66 436 51 399 1.14e-15 79.0
MS.gene069321.t1 MTR_2g015430 25.073 343 228 13 71 401 61 386 1.54e-15 79.0
MS.gene069321.t1 MTR_3g465930 26.619 278 178 9 68 331 69 334 3.21e-15 78.2
MS.gene069321.t1 MTR_7g026830 50.000 70 34 1 111 179 28 97 8.00e-15 70.5
MS.gene069321.t1 MTR_7g085930 23.333 420 265 15 50 431 45 445 4.25e-14 74.7
MS.gene069321.t1 MTR_3g028210 23.567 471 295 19 6 436 8 453 1.50e-13 72.8
MS.gene069321.t1 MTR_3g465910 25.965 285 167 11 69 331 69 331 1.69e-13 72.8
MS.gene069321.t1 MTR_3g465950 27.240 279 174 9 69 331 69 334 8.38e-13 70.5
MS.gene069321.t1 MTR_7g014620 23.776 429 276 19 29 432 15 417 8.81e-13 70.5
MS.gene069321.t1 MTR_2g045540 35.227 88 49 1 242 329 27 106 1.07e-12 65.1
MS.gene069321.t1 MTR_5g090830 22.997 387 240 17 48 399 49 412 1.16e-12 70.1
MS.gene069321.t1 MTR_6g015315 25.420 417 257 16 55 439 50 444 1.36e-12 69.7
MS.gene069321.t1 MTR_7g014610 22.717 449 293 18 29 436 29 464 4.93e-12 68.2
MS.gene069321.t1 MTR_5g090810 22.481 387 242 16 48 399 49 412 5.07e-12 68.2
MS.gene069321.t1 MTR_0502s0010 28.800 250 134 12 111 337 2 230 8.50e-12 65.5
MS.gene069321.t1 MTR_7g056087 22.691 379 247 14 6 361 4 359 1.49e-11 66.6
MS.gene069321.t1 MTR_5g090880 23.514 370 231 17 64 399 63 414 1.79e-11 66.2
MS.gene069321.t1 MTR_7g014630 30.233 215 136 7 2 209 3 210 2.54e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069321.t1 AT5G42830 56.278 446 179 4 13 451 14 450 0.0 517
MS.gene069321.t1 AT5G07850 53.139 446 208 1 6 450 8 453 1.75e-171 489
MS.gene069321.t1 AT5G07860 53.348 448 198 5 6 449 8 448 4.18e-164 471
MS.gene069321.t1 AT5G07870 50.655 458 209 3 6 450 8 461 2.93e-161 464
MS.gene069321.t1 AT5G67150 39.648 454 251 12 8 451 7 447 2.92e-101 310
MS.gene069321.t1 AT2G39980 39.915 471 215 10 29 450 29 480 1.38e-99 306
MS.gene069321.t1 AT5G01210 38.730 488 240 13 3 450 1 469 2.34e-90 283
MS.gene069321.t1 AT3G50270 36.184 456 265 12 8 451 8 449 2.81e-84 266
MS.gene069321.t1 AT3G50280 35.841 452 269 11 3 446 1 439 4.66e-80 255
MS.gene069321.t1 AT3G50300 35.550 436 258 12 6 432 4 425 2.91e-77 248
MS.gene069321.t1 AT5G38130 35.308 439 253 12 6 432 24 443 5.15e-72 235
MS.gene069321.t1 AT5G67160 35.280 428 251 11 28 451 28 433 6.18e-70 228
MS.gene069321.t1 AT5G23940 33.696 460 276 12 6 448 3 450 1.81e-65 218
MS.gene069321.t1 AT3G50280 38.762 307 177 6 146 446 8 309 1.62e-56 190
MS.gene069321.t1 AT3G50290 37.452 259 149 6 147 396 15 269 1.04e-42 152
MS.gene069321.t1 AT5G48930 26.754 456 282 16 6 440 3 427 4.93e-34 132
MS.gene069321.t1 AT2G19070 27.982 436 256 16 29 431 25 435 8.04e-33 129
MS.gene069321.t1 AT5G41040 29.379 354 213 13 62 399 63 395 8.74e-28 115
MS.gene069321.t1 AT5G41040 29.379 354 213 13 62 399 79 411 1.06e-27 115
MS.gene069321.t1 AT3G48720 29.341 334 193 15 18 334 18 325 3.44e-23 102
MS.gene069321.t1 AT1G31490 27.924 419 246 21 58 455 52 435 4.31e-21 95.9
MS.gene069321.t1 AT1G65450 28.146 302 178 12 56 335 60 344 4.27e-20 92.8
MS.gene069321.t1 AT5G63560 28.025 314 191 12 62 361 55 347 4.68e-20 92.4
MS.gene069321.t1 AT2G40230 26.455 378 213 14 63 409 54 397 6.66e-19 89.0
MS.gene069321.t1 AT1G28680 25.939 293 194 12 71 353 65 344 6.17e-18 85.9
MS.gene069321.t1 AT1G28680 25.939 293 194 12 71 353 65 344 8.90e-18 85.9
MS.gene069321.t1 AT3G26040 25.470 479 278 23 6 454 3 432 2.63e-17 84.3
MS.gene069321.t1 AT1G27620 26.667 315 183 9 68 358 58 348 1.13e-16 82.4
MS.gene069321.t1 AT1G78990 23.948 309 194 12 48 342 52 333 2.28e-16 81.6
MS.gene069321.t1 AT2G25150 26.667 330 208 14 61 374 60 371 8.84e-16 79.7
MS.gene069321.t1 AT5G16410 23.981 417 259 16 66 455 89 474 1.08e-15 79.7
MS.gene069321.t1 AT3G03480 25.915 328 211 13 30 342 33 343 1.71e-15 79.0
MS.gene069321.t1 AT1G03390 24.816 407 243 18 56 431 67 441 1.80e-14 75.9
MS.gene069321.t1 AT1G65450 28.191 188 109 6 166 335 1 180 4.45e-13 70.1
MS.gene069321.t1 AT5G39090 22.826 460 308 16 4 439 3 439 3.17e-12 68.6
MS.gene069321.t1 AT5G39080 21.712 479 306 17 3 439 2 453 4.53e-11 65.1

Find 107 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTCCTAAGGAATATTT+TGG 0.093791 3.3:-8575872 MS.gene069321:CDS
CAAAATGATATTCCTATTTA+TGG 0.117107 3.3:-8576217 MS.gene069321:CDS
AATACGTATGGAAATGAATT+TGG 0.183687 3.3:-8575632 MS.gene069321:CDS
TTAAATGGAAGGTTGATAAT+TGG 0.249266 3.3:+8576142 None:intergenic
AACTCGTGGTGATGTTTAAA+TGG 0.296206 3.3:+8576127 None:intergenic
AATCTTTATCAGCATTAGTT+TGG 0.307683 3.3:-8575982 MS.gene069321:CDS
CCACTTATCATCACAGTATA+AGG 0.318537 3.3:+8575668 None:intergenic
CACGAGTTTGTTCACACATA+TGG 0.341216 3.3:-8576112 MS.gene069321:CDS
AATGTGTTAAATGACATATT+TGG 0.351013 3.3:+8576719 None:intergenic
ATAATTGGACCATAACCTTC+TGG 0.355852 3.3:+8576157 None:intergenic
TGTGAAATGGGACCATAAAT+AGG 0.361964 3.3:+8576205 None:intergenic
TCATGCACGTCGACTACAAC+AGG 0.363744 3.3:-8575948 MS.gene069321:CDS
TCAAAGAACAACTTGCAAAA+TGG 0.371925 3.3:-8575924 MS.gene069321:CDS
AACATGCAGAAACGATGTTT+AGG 0.378660 3.3:+8576776 None:intergenic
ACAATGGGTGGGACATCAAT+GGG 0.389297 3.3:+8576415 None:intergenic
TCTGTGATGGAACATCTTAT+TGG 0.391840 3.3:-8576270 MS.gene069321:CDS
GGATATGCTAACAAATTTGA+TGG 0.406437 3.3:-8575581 MS.gene069321:CDS
CTCCCTCCTCCTTCTTGACC+TGG 0.408040 3.3:+8575542 None:intergenic
AGATGGTTTCCAGAAGGTTA+TGG 0.413058 3.3:-8576166 MS.gene069321:CDS
TTCCATTTCTATCCCCTCTC+AGG 0.415536 3.3:-8576562 MS.gene069321:CDS
AACGACGGTAGGAGAGTTGC+TGG 0.419039 3.3:-8575822 MS.gene069321:CDS
GTGGATAGGTTGATGTGAAA+TGG 0.419118 3.3:+8576192 None:intergenic
ATCTACACATTATAACCAAA+AGG 0.424756 3.3:-8576680 MS.gene069321:CDS
ATTTGGAATGGGAAAAGCTT+TGG 0.427618 3.3:-8575615 MS.gene069321:CDS
AATATGTCATTTAACACATT+GGG 0.429631 3.3:-8576716 MS.gene069321:CDS
ACATGCAGAAACGATGTTTA+GGG 0.431483 3.3:+8576777 None:intergenic
ATCAACCTATCCACAATAGA+TGG 0.431811 3.3:-8576183 MS.gene069321:CDS
ATTTGGTTTGAGTCTTCGAT+TGG 0.434962 3.3:+8576736 None:intergenic
ATCACAGAGACAATGATTCA+TGG 0.442497 3.3:+8576285 None:intergenic
TTTGGTTTGAGTCTTCGATT+GGG 0.443458 3.3:+8576737 None:intergenic
TGCATGAATAAATTTAGCTC+CGG 0.444458 3.3:+8576471 None:intergenic
AATGGAAAAGCGTGAGGGAA+AGG 0.449937 3.3:+8576578 None:intergenic
AGTATAAGAATGAGGATCTT+CGG 0.458409 3.3:+8576519 None:intergenic
TATGGAAATGAATTTGGAAT+GGG 0.460328 3.3:-8575626 MS.gene069321:CDS
ATGGAAAAGCGTGAGGGAAA+GGG 0.461186 3.3:+8576579 None:intergenic
GGTTCTCTATGAAATGTTGT+TGG 0.465501 3.3:+8576623 None:intergenic
GACAATGGGTGGGACATCAA+TGG 0.465845 3.3:+8576414 None:intergenic
TCAAAGAACGATTGGACAAT+GGG 0.466912 3.3:+8576400 None:intergenic
GAGGTGGTTCCATTCTTGTT+CGG 0.467336 3.3:+8575891 None:intergenic
CCAAAATATTCCTTAGGAAG+AGG 0.467793 3.3:+8575872 None:intergenic
ATGATAATAAAGTGGTGCTT+AGG 0.471109 3.3:-8575748 MS.gene069321:CDS
CAAGTCACAGAATTAGTAGA+TGG 0.474789 3.3:-8576325 MS.gene069321:CDS
GAATTCCCAAAATATTCCTT+AGG 0.477642 3.3:+8575866 None:intergenic
GGAAAAGTAATTTCATATCC+AGG 0.482689 3.3:-8575560 MS.gene069321:CDS
GAGTTGCTGGAGAATGATCT+AGG 0.486265 3.3:-8575809 MS.gene069321:CDS
TCACCGAGGTTTAATACGTA+TGG 0.489403 3.3:-8575644 MS.gene069321:CDS
AAATATGTCATTTAACACAT+TGG 0.493987 3.3:-8576717 MS.gene069321:CDS
AGTGTTTCAGTTTGTCCACC+AGG 0.507243 3.3:+8576602 None:intergenic
TGTTGGTTTAGTAATGATGT+TGG 0.510991 3.3:+8576640 None:intergenic
CAATGGGTGGGACATCAATG+GGG 0.513002 3.3:+8576416 None:intergenic
TGCAAATCATGATAATAAAG+TGG 0.522035 3.3:-8575756 MS.gene069321:CDS
TGCTGGAGAATGATCTAGGA+TGG 0.522825 3.3:-8575805 MS.gene069321:CDS
ACCTGAGAAAATGATGGTGC+TGG 0.523005 3.3:-8575495 MS.gene069321:CDS
TACAAACAACCGAACAAGAA+TGG 0.524034 3.3:-8575900 MS.gene069321:CDS
TGTCATGATCAAAGAACGAT+TGG 0.527909 3.3:+8576392 None:intergenic
GCATGAATAAATTTAGCTCC+GGG 0.529301 3.3:+8576472 None:intergenic
TGGATAGGTTGATGTGAAAT+GGG 0.531677 3.3:+8576193 None:intergenic
GTATGGAAATGAATTTGGAA+TGG 0.534748 3.3:-8575627 MS.gene069321:CDS
CCTTATACTGTGATGATAAG+TGG 0.535234 3.3:-8575668 MS.gene069321:CDS
AATGGAACCACCTCTTCCTA+AGG 0.542226 3.3:-8575882 MS.gene069321:CDS
TGTAGTGAGTGCTGAAACGA+CGG 0.546049 3.3:-8575837 MS.gene069321:CDS
TCTACACATTATAACCAAAA+GGG 0.546861 3.3:-8576679 MS.gene069321:CDS
GGAAACCATCTATTGTGGAT+AGG 0.548035 3.3:+8576178 None:intergenic
CGTGGTGATGTTTAAATGGA+AGG 0.548108 3.3:+8576131 None:intergenic
AGTAACAAGACGACCTGAGA+GGG 0.549751 3.3:+8576549 None:intergenic
GACCTGAGAGGGGATAGAAA+TGG 0.554535 3.3:+8576560 None:intergenic
AAAGCTTTGGCAGTTAGAAG+TGG 0.567341 3.3:-8575602 MS.gene069321:CDS
AATGGGTGGGACATCAATGG+GGG 0.568371 3.3:+8576417 None:intergenic
TTGGTTTGAGTCTTCGATTG+GGG 0.568932 3.3:+8576738 None:intergenic
ATGATCTAGGATGGGCAGCA+TGG 0.569534 3.3:-8575796 MS.gene069321:CDS
ATCAAAGAACGATTGGACAA+TGG 0.570569 3.3:+8576399 None:intergenic
ACGAAAACAGTATAAGAATG+AGG 0.571532 3.3:+8576511 None:intergenic
GACAAAGCAGTCAACCATGA+TGG 0.574887 3.3:-8576373 MS.gene069321:CDS
ATGAATCATTGTCTCTGTGA+TGG 0.575359 3.3:-8576283 MS.gene069321:CDS
TGCTTAGGTCGGTTGAAGAG+TGG 0.577268 3.3:-8575733 MS.gene069321:CDS
TATAGCGAAACTTAAAGCAA+AGG 0.578915 3.3:-8576044 MS.gene069321:CDS
TATCCAGGTCAAGAAGGAGG+AGG 0.584517 3.3:-8575545 MS.gene069321:CDS
CACAATAGATGGTTTCCAGA+AGG 0.584706 3.3:-8576172 MS.gene069321:CDS
ATTTCATATCCAGGTCAAGA+AGG 0.586316 3.3:-8575551 MS.gene069321:CDS
CAGAAACGATGTTTAGGGAA+GGG 0.587217 3.3:+8576782 None:intergenic
GTTATAATGTGTAGATAACA+TGG 0.589863 3.3:+8576687 None:intergenic
ATAGTCAAAGATTAGAACAA+AGG 0.594150 3.3:+8575431 None:intergenic
AAATATTCCTTAGGAAGAGG+TGG 0.594958 3.3:+8575875 None:intergenic
CTTCTGGAAACCATCTATTG+TGG 0.595445 3.3:+8576173 None:intergenic
ATCCAGGTCAAGAAGGAGGA+GGG 0.602246 3.3:-8575544 MS.gene069321:CDS
GCAGAAACGATGTTTAGGGA+AGG 0.605789 3.3:+8576781 None:intergenic
TTTCCATACGTATTAAACCT+CGG 0.609189 3.3:+8575641 None:intergenic
ACAACATTTCATAGAGAACC+TGG 0.610615 3.3:-8576620 MS.gene069321:CDS
AAGAACGATTGGACAATGGG+TGG 0.614907 3.3:+8576403 None:intergenic
AGAACGATTGGACAATGGGT+GGG 0.617288 3.3:+8576404 None:intergenic
TAATAAAGTGGTGCTTAGGT+CGG 0.624945 3.3:-8575744 MS.gene069321:CDS
GCTGGAGAATGATCTAGGAT+GGG 0.629384 3.3:-8575804 MS.gene069321:CDS
TGGTTTGAGTCTTCGATTGG+GGG 0.638810 3.3:+8576739 None:intergenic
GATAGAAATGGAAAAGCGTG+AGG 0.641029 3.3:+8576572 None:intergenic
TCTTTCACCTGAGAAAATGA+TGG 0.654677 3.3:-8575501 MS.gene069321:CDS
TCATATCCAGGTCAAGAAGG+AGG 0.656740 3.3:-8575548 MS.gene069321:CDS
AAGACATGGTGTGACCATCA+TGG 0.667161 3.3:+8576359 None:intergenic
GGCAGCATGGAAAATTCATG+TGG 0.671300 3.3:-8575783 MS.gene069321:CDS
GTGAGTGCTGAAACGACGGT+AGG 0.677302 3.3:-8575833 MS.gene069321:CDS
ATAGAAATGGAAAAGCGTGA+GGG 0.687050 3.3:+8576573 None:intergenic
TAGTAACAAGACGACCTGAG+AGG 0.695039 3.3:+8576548 None:intergenic
CATGCACGTCGACTACAACA+GGG 0.700954 3.3:-8575947 MS.gene069321:CDS
TTGAATAGATAACAAAGACA+TGG 0.705301 3.3:+8576345 None:intergenic
GTAACAAGACGACCTGAGAG+GGG 0.714877 3.3:+8576550 None:intergenic
ACATTTCATAGAGAACCTGG+TGG 0.735789 3.3:-8576617 MS.gene069321:CDS
TGATGATAAGTGGTTCACCG+AGG 0.741768 3.3:-8575658 MS.gene069321:CDS
CATATGTGTGAACAAACTCG+TGG 0.754058 3.3:+8576113 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTAATCGATACAAAAA+AGG + chr3.3:8576534-8576553 None:intergenic 20.0%
!! AATGTGTTAAATGACATATT+TGG + chr3.3:8575516-8575535 None:intergenic 20.0%
!! CAAAATGATATTCCTATTTA+TGG - chr3.3:8576015-8576034 MS.gene069321:CDS 20.0%
!!! AAATATGTCATTTAACACAT+TGG - chr3.3:8575515-8575534 MS.gene069321:CDS 20.0%
!!! AAGATTCTCTCTTTTAAAAT+GGG + chr3.3:8576150-8576169 None:intergenic 20.0%
!!! AATATGTCATTTAACACATT+GGG - chr3.3:8575516-8575535 MS.gene069321:CDS 20.0%
! AATACGTATGGAAATGAATT+TGG - chr3.3:8576600-8576619 MS.gene069321:CDS 25.0%
! AATCTTTATCAGCATTAGTT+TGG - chr3.3:8576250-8576269 MS.gene069321:CDS 25.0%
! ATCTACACATTATAACCAAA+AGG - chr3.3:8575552-8575571 MS.gene069321:CDS 25.0%
! GTTATAATGTGTAGATAACA+TGG + chr3.3:8575548-8575567 None:intergenic 25.0%
! TCTACACATTATAACCAAAA+GGG - chr3.3:8575553-8575572 MS.gene069321:CDS 25.0%
! TGCAAATCATGATAATAAAG+TGG - chr3.3:8576476-8576495 MS.gene069321:CDS 25.0%
! TTGAATAGATAACAAAGACA+TGG + chr3.3:8575890-8575909 None:intergenic 25.0%
!! TATGGAAATGAATTTGGAAT+GGG - chr3.3:8576606-8576625 MS.gene069321:CDS 25.0%
!!! GAAGATTCTCTCTTTTAAAA+TGG + chr3.3:8576151-8576170 None:intergenic 25.0%
!!! TTAAATGGAAGGTTGATAAT+TGG + chr3.3:8576093-8576112 None:intergenic 25.0%
ACGAAAACAGTATAAGAATG+AGG + chr3.3:8575724-8575743 None:intergenic 30.0%
AGTATAAGAATGAGGATCTT+CGG + chr3.3:8575716-8575735 None:intergenic 30.0%
ATGATAATAAAGTGGTGCTT+AGG - chr3.3:8576484-8576503 MS.gene069321:CDS 30.0%
GAATTCCCAAAATATTCCTT+AGG + chr3.3:8576369-8576388 None:intergenic 30.0%
GGAAAAGTAATTTCATATCC+AGG - chr3.3:8576672-8576691 MS.gene069321:CDS 30.0%
GGATATGCTAACAAATTTGA+TGG - chr3.3:8576651-8576670 MS.gene069321:CDS 30.0%
GTATGGAAATGAATTTGGAA+TGG - chr3.3:8576605-8576624 MS.gene069321:CDS 30.0%
TATAGCGAAACTTAAAGCAA+AGG - chr3.3:8576188-8576207 MS.gene069321:CDS 30.0%
TCAAAGAACAACTTGCAAAA+TGG - chr3.3:8576308-8576327 MS.gene069321:CDS 30.0%
TTTCCATACGTATTAAACCT+CGG + chr3.3:8576594-8576613 None:intergenic 30.0%
! CTCTTCCTAAGGAATATTTT+GGG - chr3.3:8576361-8576380 MS.gene069321:CDS 30.0%
! TGCATGAATAAATTTAGCTC+CGG + chr3.3:8575764-8575783 None:intergenic 30.0%
! TTAGTAGATGGTGTTTTCAT+TGG - chr3.3:8575919-8575938 MS.gene069321:CDS 30.0%
!! TGTTGGTTTAGTAATGATGT+TGG + chr3.3:8575595-8575614 None:intergenic 30.0%
AAATATTCCTTAGGAAGAGG+TGG + chr3.3:8576360-8576379 None:intergenic 35.0%
AACATGCAGAAACGATGTTT+AGG + chr3.3:8575459-8575478 None:intergenic 35.0%
ACAACATTTCATAGAGAACC+TGG - chr3.3:8575612-8575631 MS.gene069321:CDS 35.0%
ACATGCAGAAACGATGTTTA+GGG + chr3.3:8575458-8575477 None:intergenic 35.0%
ATAATTGGACCATAACCTTC+TGG + chr3.3:8576078-8576097 None:intergenic 35.0%
ATCAAAGAACGATTGGACAA+TGG + chr3.3:8575836-8575855 None:intergenic 35.0%
ATCAACCTATCCACAATAGA+TGG - chr3.3:8576049-8576068 MS.gene069321:CDS 35.0%
ATCACAGAGACAATGATTCA+TGG + chr3.3:8575950-8575969 None:intergenic 35.0%
ATGAATCATTGTCTCTGTGA+TGG - chr3.3:8575949-8575968 MS.gene069321:CDS 35.0%
ATTTCATATCCAGGTCAAGA+AGG - chr3.3:8576681-8576700 MS.gene069321:CDS 35.0%
CAAGTCACAGAATTAGTAGA+TGG - chr3.3:8575907-8575926 MS.gene069321:CDS 35.0%
CCAAAATATTCCTTAGGAAG+AGG + chr3.3:8576363-8576382 None:intergenic 35.0%
CCACTTATCATCACAGTATA+AGG + chr3.3:8576567-8576586 None:intergenic 35.0%
CCTTATACTGTGATGATAAG+TGG - chr3.3:8576564-8576583 MS.gene069321:CDS 35.0%
CTATAGATTCCGCTGAAAAA+TGG + chr3.3:8576173-8576192 None:intergenic 35.0%
GGTTCTCTATGAAATGTTGT+TGG + chr3.3:8575612-8575631 None:intergenic 35.0%
TAATAAAGTGGTGCTTAGGT+CGG - chr3.3:8576488-8576507 MS.gene069321:CDS 35.0%
TACAAACAACCGAACAAGAA+TGG - chr3.3:8576332-8576351 MS.gene069321:CDS 35.0%
TCAAAGAACGATTGGACAAT+GGG + chr3.3:8575835-8575854 None:intergenic 35.0%
TCTTTCACCTGAGAAAATGA+TGG - chr3.3:8576731-8576750 MS.gene069321:CDS 35.0%
TGTCATGATCAAAGAACGAT+TGG + chr3.3:8575843-8575862 None:intergenic 35.0%
TGTGAAATGGGACCATAAAT+AGG + chr3.3:8576030-8576049 None:intergenic 35.0%
! AACTCGTGGTGATGTTTAAA+TGG + chr3.3:8576108-8576127 None:intergenic 35.0%
! ATAGAAATGGAAAAGCGTGA+GGG + chr3.3:8575662-8575681 None:intergenic 35.0%
! ATTTGGAATGGGAAAAGCTT+TGG - chr3.3:8576617-8576636 MS.gene069321:CDS 35.0%
! CCTCTTCCTAAGGAATATTT+TGG - chr3.3:8576360-8576379 MS.gene069321:CDS 35.0%
! GCATGAATAAATTTAGCTCC+GGG + chr3.3:8575763-8575782 None:intergenic 35.0%
! TCTGTGATGGAACATCTTAT+TGG - chr3.3:8575962-8575981 MS.gene069321:CDS 35.0%
!! ATTTGGTTTGAGTCTTCGAT+TGG + chr3.3:8575499-8575518 None:intergenic 35.0%
!! GAGAATCTTCCATTTTTCAG+CGG - chr3.3:8576161-8576180 MS.gene069321:CDS 35.0%
!! TGGATAGGTTGATGTGAAAT+GGG + chr3.3:8576042-8576061 None:intergenic 35.0%
!! TTTGGTTTGAGTCTTCGATT+GGG + chr3.3:8575498-8575517 None:intergenic 35.0%
!! TTTTGAAGAGAAGTCCCTTT+TGG + chr3.3:8575570-8575589 None:intergenic 35.0%
ACATTTCATAGAGAACCTGG+TGG - chr3.3:8575615-8575634 MS.gene069321:CDS 40.0%
AGATGGTTTCCAGAAGGTTA+TGG - chr3.3:8576066-8576085 MS.gene069321:CDS 40.0%
CACAATAGATGGTTTCCAGA+AGG - chr3.3:8576060-8576079 MS.gene069321:CDS 40.0%
CAGAAACGATGTTTAGGGAA+GGG + chr3.3:8575453-8575472 None:intergenic 40.0%
CATATGTGTGAACAAACTCG+TGG + chr3.3:8576122-8576141 None:intergenic 40.0%
GGAAACCATCTATTGTGGAT+AGG + chr3.3:8576057-8576076 None:intergenic 40.0%
TCACCGAGGTTTAATACGTA+TGG - chr3.3:8576588-8576607 MS.gene069321:CDS 40.0%
! AAAGCTTTGGCAGTTAGAAG+TGG - chr3.3:8576630-8576649 MS.gene069321:CDS 40.0%
! CACGAGTTTGTTCACACATA+TGG - chr3.3:8576120-8576139 MS.gene069321:CDS 40.0%
! CGTGGTGATGTTTAAATGGA+AGG + chr3.3:8576104-8576123 None:intergenic 40.0%
! CTTCTGGAAACCATCTATTG+TGG + chr3.3:8576062-8576081 None:intergenic 40.0%
! GATAGAAATGGAAAAGCGTG+AGG + chr3.3:8575663-8575682 None:intergenic 40.0%
! TTGGTTTGAGTCTTCGATTG+GGG + chr3.3:8575497-8575516 None:intergenic 40.0%
!! GTGGATAGGTTGATGTGAAA+TGG + chr3.3:8576043-8576062 None:intergenic 40.0%
AAGAACGATTGGACAATGGG+TGG + chr3.3:8575832-8575851 None:intergenic 45.0%
AAGACATGGTGTGACCATCA+TGG + chr3.3:8575876-8575895 None:intergenic 45.0%
AATGGAACCACCTCTTCCTA+AGG - chr3.3:8576350-8576369 MS.gene069321:CDS 45.0%
ACAATGGGTGGGACATCAAT+GGG + chr3.3:8575820-8575839 None:intergenic 45.0%
AGAACGATTGGACAATGGGT+GGG + chr3.3:8575831-8575850 None:intergenic 45.0%
AGTAACAAGACGACCTGAGA+GGG + chr3.3:8575686-8575705 None:intergenic 45.0%
AGTGTTTCAGTTTGTCCACC+AGG + chr3.3:8575633-8575652 None:intergenic 45.0%
GACAAAGCAGTCAACCATGA+TGG - chr3.3:8575859-8575878 MS.gene069321:CDS 45.0%
GAGGTGGTTCCATTCTTGTT+CGG + chr3.3:8576344-8576363 None:intergenic 45.0%
GAGTTGCTGGAGAATGATCT+AGG - chr3.3:8576423-8576442 MS.gene069321:CDS 45.0%
GCAGAAACGATGTTTAGGGA+AGG + chr3.3:8575454-8575473 None:intergenic 45.0%
GGCAGCATGGAAAATTCATG+TGG - chr3.3:8576449-8576468 MS.gene069321:CDS 45.0%
GGGGGTGAGGATATCATTTA+TGG + chr3.3:8575800-8575819 None:intergenic 45.0%
GTCGATTGCAAAAACAGTCC+CGG - chr3.3:8575742-8575761 MS.gene069321:CDS 45.0%
TAGTAACAAGACGACCTGAG+AGG + chr3.3:8575687-8575706 None:intergenic 45.0%
TCATATCCAGGTCAAGAAGG+AGG - chr3.3:8576684-8576703 MS.gene069321:CDS 45.0%
TGATGATAAGTGGTTCACCG+AGG - chr3.3:8576574-8576593 MS.gene069321:CDS 45.0%
TGCTGGAGAATGATCTAGGA+TGG - chr3.3:8576427-8576446 MS.gene069321:CDS 45.0%
TGGTTTGAGTCTTCGATTGG+GGG + chr3.3:8575496-8575515 None:intergenic 45.0%
TTCCATTTCTATCCCCTCTC+AGG - chr3.3:8575670-8575689 MS.gene069321:CDS 45.0%
! AATGGAAAAGCGTGAGGGAA+AGG + chr3.3:8575657-8575676 None:intergenic 45.0%
! ACCTGAGAAAATGATGGTGC+TGG - chr3.3:8576737-8576756 MS.gene069321:CDS 45.0%
! ATGGAAAAGCGTGAGGGAAA+GGG + chr3.3:8575656-8575675 None:intergenic 45.0%
! GCTGGAGAATGATCTAGGAT+GGG - chr3.3:8576428-8576447 MS.gene069321:CDS 45.0%
! TCCAGCACCATCATTTTCTC+AGG + chr3.3:8576741-8576760 None:intergenic 45.0%
!! TGTAGTGAGTGCTGAAACGA+CGG - chr3.3:8576395-8576414 MS.gene069321:CDS 45.0%
AATGGGTGGGACATCAATGG+GGG + chr3.3:8575818-8575837 None:intergenic 50.0%
ATCCAGGTCAAGAAGGAGGA+GGG - chr3.3:8576688-8576707 MS.gene069321:CDS 50.0%
CAATGGGTGGGACATCAATG+GGG + chr3.3:8575819-8575838 None:intergenic 50.0%
GACAATGGGTGGGACATCAA+TGG + chr3.3:8575821-8575840 None:intergenic 50.0%
GACCTGAGAGGGGATAGAAA+TGG + chr3.3:8575675-8575694 None:intergenic 50.0%
GAGTCTTCGATTGGGGGATA+TGG + chr3.3:8575490-8575509 None:intergenic 50.0%
GTAACAAGACGACCTGAGAG+GGG + chr3.3:8575685-8575704 None:intergenic 50.0%
TATCCAGGTCAAGAAGGAGG+AGG - chr3.3:8576687-8576706 MS.gene069321:CDS 50.0%
TGCTTAGGTCGGTTGAAGAG+TGG - chr3.3:8576499-8576518 MS.gene069321:CDS 50.0%
! ATGATCTAGGATGGGCAGCA+TGG - chr3.3:8576436-8576455 MS.gene069321:CDS 50.0%
! CATGCACGTCGACTACAACA+GGG - chr3.3:8576285-8576304 MS.gene069321:CDS 50.0%
! TCATGCACGTCGACTACAAC+AGG - chr3.3:8576284-8576303 MS.gene069321:CDS 50.0%
AACGACGGTAGGAGAGTTGC+TGG - chr3.3:8576410-8576429 MS.gene069321:CDS 55.0%
!! GTGAGTGCTGAAACGACGGT+AGG - chr3.3:8576399-8576418 MS.gene069321:CDS 55.0%
CTCCCTCCTCCTTCTTGACC+TGG + chr3.3:8576693-8576712 None:intergenic 60.0%
GTGGGACATCAATGGGGGTG+AGG + chr3.3:8575813-8575832 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 8575442 8576812 8575442 ID=MS.gene069321
chr3.3 mRNA 8575442 8576812 8575442 ID=MS.gene069321.t1;Parent=MS.gene069321
chr3.3 exon 8575442 8576812 8575442 ID=MS.gene069321.t1.exon1;Parent=MS.gene069321.t1
chr3.3 CDS 8575442 8576812 8575442 ID=cds.MS.gene069321.t1;Parent=MS.gene069321.t1
Gene Sequence

>MS.gene069321

ATGAGCATCCCTTCCCTAAACATCGTTTCTGCATGTTTCATTAAACCATATCCCCCAATCGAAGACTCAAACCAAATATGTCATTTAACACATTGGGATATTGCCATGTTATCTACACATTATAACCAAAAGGGACTTCTCTTCAAAAAACCAACATCATTACTAAACCAACAACATTTCATAGAGAACCTGGTGGACAAACTGAAACACTCCCTTTCCCTCACGCTTTTCCATTTCTATCCCCTCTCAGGTCGTCTTGTTACTAAAAAATCCGAAGATCCTCATTCTTATACTGTTTTCGTCGATTGCAAAAACAGTCCCGGAGCTAAATTTATTCATGCAACTTTAGATATCACCATAAATGATATCCTCACCCCCATTGATGTCCCACCCATTGTCCAATCGTTCTTTGATCATGACAAAGCAGTCAACCATGATGGTCACACCATGTCTTTGTTATCTATTCAAGTCACAGAATTAGTAGATGGTGTTTTCATTGGTTGTTCCATGAATCATTGTCTCTGTGATGGAACATCTTATTGGAATTTCTTCAACACATTTTCTGAGATATTTCAAAATGATATTCCTATTTATGGTCCCATTTCACATCAACCTATCCACAATAGATGGTTTCCAGAAGGTTATGGTCCAATTATCAACCTTCCATTTAAACATCACCACGAGTTTGTTCACACATATGGAATACCCATTTTAAAAGAGAGAATCTTCCATTTTTCAGCGGAATCTATAGCGAAACTTAAAGCAAAGGCAAATGCAGAGTGTAATACAAACAAAATTTCTTCGTTTCAATCTTTATCAGCATTAGTTTGGAGATCTATAACTCATGCACGTCGACTACAACAGGGTCAAAGAACAACTTGCAAAATGGCTACAAACAACCGAACAAGAATGGAACCACCTCTTCCTAAGGAATATTTTGGGAATTCAATTTATGTAGTGAGTGCTGAAACGACGGTAGGAGAGTTGCTGGAGAATGATCTAGGATGGGCAGCATGGAAAATTCATGTGGCTATTGCAAATCATGATAATAAAGTGGTGCTTAGGTCGGTTGAAGAGTGGTTTCGTTCTCCTTTTTTGTATCGATTAGATTTGTTTTTTGATCCTTATACTGTGATGATAAGTGGTTCACCGAGGTTTAATACGTATGGAAATGAATTTGGAATGGGAAAAGCTTTGGCAGTTAGAAGTGGATATGCTAACAAATTTGATGGAAAAGTAATTTCATATCCAGGTCAAGAAGGAGGAGGGAGCATAGATCTTGAAGTGTGTCTTTCACCTGAGAAAATGATGGTGCTGGAGACAGATGAAGAGTTCATGAACTCAGTTTCTGTGTTTAATCCTTTGTTCTAA

Protein sequence

>MS.gene069321.t1

MSIPSLNIVSACFIKPYPPIEDSNQICHLTHWDIAMLSTHYNQKGLLFKKPTSLLNQQHFIENLVDKLKHSLSLTLFHFYPLSGRLVTKKSEDPHSYTVFVDCKNSPGAKFIHATLDITINDILTPIDVPPIVQSFFDHDKAVNHDGHTMSLLSIQVTELVDGVFIGCSMNHCLCDGTSYWNFFNTFSEIFQNDIPIYGPISHQPIHNRWFPEGYGPIINLPFKHHHEFVHTYGIPILKERIFHFSAESIAKLKAKANAECNTNKISSFQSLSALVWRSITHARRLQQGQRTTCKMATNNRTRMEPPLPKEYFGNSIYVVSAETTVGELLENDLGWAAWKIHVAIANHDNKVVLRSVEEWFRSPFLYRLDLFFDPYTVMISGSPRFNTYGNEFGMGKALAVRSGYANKFDGKVISYPGQEGGGSIDLEVCLSPEKMMVLETDEEFMNSVSVFNPLF