AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38362

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38362.t1 MTR_3g101930 85.463 454 39 2 1 427 2 455 0.0 798
MS.gene38362.t1 MTR_3g101900 66.960 454 114 5 1 426 2 447 0.0 608
MS.gene38362.t1 MTR_3g102020 61.013 454 145 5 1 426 1 450 0.0 548
MS.gene38362.t1 MTR_3g101960 61.674 454 133 7 1 422 1 445 0.0 545
MS.gene38362.t1 MTR_3g101970 59.692 454 137 5 1 426 1 436 0.0 538
MS.gene38362.t1 MTR_3g102010 58.242 455 155 7 1 426 2 450 0.0 520
MS.gene38362.t1 MTR_3g102030 50.000 322 104 6 87 381 29 320 5.71e-100 301
MS.gene38362.t1 MTR_4g094842 37.691 459 231 14 4 423 2 444 8.42e-86 269
MS.gene38362.t1 MTR_4g094835 38.249 434 214 11 25 423 28 442 4.00e-79 252
MS.gene38362.t1 MTR_0190s0020 36.735 441 231 11 18 426 17 441 1.19e-78 250
MS.gene38362.t1 MTR_8g041770 36.028 433 220 11 29 426 30 440 2.15e-77 247
MS.gene38362.t1 MTR_4g022800 36.547 446 223 13 21 426 16 441 4.82e-77 246
MS.gene38362.t1 MTR_4g022720 37.215 438 222 11 21 425 16 433 5.25e-76 243
MS.gene38362.t1 MTR_4g094838 34.965 429 217 8 29 423 28 428 4.87e-75 241
MS.gene38362.t1 MTR_3g070170 34.497 487 224 14 3 423 9 466 7.45e-75 241
MS.gene38362.t1 MTR_4g022670 35.177 452 220 12 21 426 16 440 4.42e-74 238
MS.gene38362.t1 MTR_3g088420 35.092 436 230 11 23 426 18 432 2.69e-71 231
MS.gene38362.t1 MTR_7g026860 34.537 443 230 12 21 425 16 436 4.65e-71 231
MS.gene38362.t1 MTR_4g015180 35.560 509 222 16 1 426 1 486 9.52e-71 231
MS.gene38362.t1 MTR_5g081960 33.465 508 227 15 1 423 1 482 1.21e-70 231
MS.gene38362.t1 MTR_4g022825 34.205 459 239 12 7 426 5 439 2.74e-68 223
MS.gene38362.t1 MTR_4g094828 35.281 445 223 14 26 426 26 449 2.00e-66 219
MS.gene38362.t1 MTR_4g094832 37.822 349 177 6 107 423 86 426 4.97e-66 217
MS.gene38362.t1 MTR_3g026310 34.081 446 224 12 29 426 24 447 1.84e-64 214
MS.gene38362.t1 MTR_4g022290 33.766 462 240 13 7 425 5 443 3.48e-63 210
MS.gene38362.t1 MTR_8g079710 34.325 437 223 13 21 416 21 434 2.74e-60 202
MS.gene38362.t1 MTR_4g022760 42.086 278 132 9 21 287 16 275 1.42e-54 186
MS.gene38362.t1 MTR_6g016815 33.000 400 209 11 29 426 38 380 1.22e-50 176
MS.gene38362.t1 MTR_6g045553 28.274 481 271 13 3 426 11 474 6.85e-41 151
MS.gene38362.t1 MTR_7g026850 43.949 157 73 5 43 198 21 163 9.94e-33 122
MS.gene38362.t1 MTR_8g040760 35.683 227 128 6 4 228 2 212 1.67e-27 109
MS.gene38362.t1 MTR_6g034495 41.727 139 71 4 68 198 28 164 2.74e-27 107
MS.gene38362.t1 MTR_4g094825 37.126 167 96 3 29 194 92 250 8.54e-24 102
MS.gene38362.t1 MTR_4g094825 37.838 111 69 0 313 423 277 387 6.05e-20 91.7
MS.gene38362.t1 MTR_8g096530 33.607 244 120 12 63 288 53 272 1.45e-21 96.7
MS.gene38362.t1 MTR_7g026770 46.032 126 44 4 157 282 132 233 1.46e-21 94.7
MS.gene38362.t1 MTR_3g098980 30.992 242 138 9 69 299 66 289 4.23e-21 95.5
MS.gene38362.t1 MTR_8g075610 26.216 370 195 17 69 390 47 386 1.73e-20 93.2
MS.gene38362.t1 MTR_4g007540 28.958 259 147 11 55 299 44 279 2.30e-20 93.2
MS.gene38362.t1 MTR_2g064495 24.384 406 241 14 55 417 44 426 7.81e-20 91.7
MS.gene38362.t1 MTR_2g105330 24.384 406 241 14 55 417 44 426 2.40e-19 90.1
MS.gene38362.t1 MTR_3g049150 28.462 260 150 9 57 300 46 285 2.91e-18 87.0
MS.gene38362.t1 MTR_7g026830 51.429 70 33 1 113 181 28 97 2.94e-18 80.1
MS.gene38362.t1 MTR_3g026950 25.385 260 154 9 63 300 48 289 5.01e-18 86.3
MS.gene38362.t1 MTR_7g027175 30.620 258 143 11 57 299 56 292 1.94e-15 78.2
MS.gene38362.t1 MTR_4g127650 25.157 318 191 14 8 306 11 300 5.01e-15 77.0
MS.gene38362.t1 MTR_5g026320 28.030 264 134 13 57 307 66 286 7.88e-15 76.6
MS.gene38362.t1 MTR_3g465980 27.451 255 155 9 57 299 56 292 1.68e-14 75.5
MS.gene38362.t1 MTR_6g015815 24.532 481 261 20 4 416 6 452 3.40e-14 74.7
MS.gene38362.t1 MTR_7g084940 28.455 246 142 10 67 297 67 293 5.77e-14 73.9
MS.gene38362.t1 MTR_3g465990 27.843 255 154 10 57 299 56 292 8.60e-14 73.2
MS.gene38362.t1 MTR_8g012750 25.326 383 215 17 55 375 48 421 9.57e-14 73.2
MS.gene38362.t1 MTR_7g114520 28.163 245 141 12 69 299 66 289 1.45e-13 72.8
MS.gene38362.t1 MTR_3g465910 27.686 242 145 9 70 299 69 292 5.47e-13 71.2
MS.gene38362.t1 MTR_1g053315 25.347 288 184 11 14 288 26 295 9.15e-13 70.1
MS.gene38362.t1 MTR_8g079970 27.490 251 152 13 55 299 46 272 1.30e-12 69.7
MS.gene38362.t1 MTR_1g040175 25.503 298 172 13 69 347 64 330 1.36e-12 69.7
MS.gene38362.t1 MTR_7g114550 26.639 244 150 10 66 299 62 286 2.12e-12 68.9
MS.gene38362.t1 MTR_3g465930 25.105 239 159 5 69 299 69 295 2.21e-12 68.9
MS.gene38362.t1 MTR_7g086000 29.237 236 132 11 72 289 63 281 3.16e-12 68.6
MS.gene38362.t1 MTR_7g114560 26.556 241 148 10 69 299 65 286 3.66e-12 68.2
MS.gene38362.t1 MTR_4g055170 25.890 309 192 11 3 297 9 294 1.64e-11 66.2
MS.gene38362.t1 MTR_6g034485 40.741 81 47 1 209 288 1 81 3.61e-11 60.8
MS.gene38362.t1 MTR_7g114490 26.939 245 142 11 69 299 65 286 3.63e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38362.t1 AT5G42830 50.226 442 185 5 13 426 14 448 2.23e-148 429
MS.gene38362.t1 AT5G07850 47.797 454 203 6 2 426 4 452 8.19e-142 413
MS.gene38362.t1 AT5G07870 44.540 467 207 7 2 426 4 460 2.02e-123 366
MS.gene38362.t1 AT5G07860 44.912 452 211 8 4 426 6 448 1.31e-120 358
MS.gene38362.t1 AT5G67150 35.498 462 232 15 8 426 7 445 8.02e-79 251
MS.gene38362.t1 AT2G39980 34.172 477 209 14 29 426 29 479 2.08e-76 246
MS.gene38362.t1 AT5G01210 35.223 494 226 15 1 426 1 468 2.16e-71 233
MS.gene38362.t1 AT3G50280 33.630 449 248 13 9 423 7 439 2.16e-70 229
MS.gene38362.t1 AT3G50270 32.334 467 255 14 1 426 1 447 1.09e-68 225
MS.gene38362.t1 AT3G50300 31.878 458 258 12 8 427 6 447 1.13e-63 211
MS.gene38362.t1 AT5G38130 32.569 436 240 15 8 408 26 442 9.02e-61 204
MS.gene38362.t1 AT5G67160 31.294 425 235 14 29 422 29 427 1.24e-53 185
MS.gene38362.t1 AT3G50280 35.238 315 166 8 141 423 1 309 1.27e-50 174
MS.gene38362.t1 AT5G23940 28.913 460 269 13 7 423 4 448 3.99e-45 163
MS.gene38362.t1 AT3G50290 35.385 260 129 8 149 374 15 269 3.16e-33 126
MS.gene38362.t1 AT5G41040 31.765 255 134 11 63 299 79 311 5.83e-24 103
MS.gene38362.t1 AT5G41040 31.765 255 134 11 63 299 63 295 5.96e-24 103
MS.gene38362.t1 AT5G48930 25.000 416 227 14 55 417 44 427 2.53e-22 99.0
MS.gene38362.t1 AT5G63560 30.137 292 159 13 21 299 22 281 3.91e-22 98.2
MS.gene38362.t1 AT3G48720 30.282 284 159 12 28 299 29 285 4.19e-22 98.2
MS.gene38362.t1 AT2G19070 26.190 420 226 19 59 417 48 444 2.44e-17 84.3
MS.gene38362.t1 AT5G57840 25.164 457 242 21 28 424 23 439 2.60e-15 78.2
MS.gene38362.t1 AT1G31490 27.869 244 131 10 55 283 48 261 7.80e-15 76.6
MS.gene38362.t1 AT1G65450 27.165 254 152 11 63 302 66 300 7.97e-15 76.6
MS.gene38362.t1 AT4G15390 26.159 302 182 13 7 300 9 277 1.81e-12 69.3
MS.gene38362.t1 AT4G15390 26.159 302 182 13 7 300 9 277 1.81e-12 69.3
MS.gene38362.t1 AT1G03390 26.829 246 152 9 54 288 64 292 3.59e-12 68.6
MS.gene38362.t1 AT2G40230 29.032 248 142 12 68 299 58 287 1.60e-11 66.2
MS.gene38362.t1 AT1G24420 24.569 464 265 19 6 425 5 427 3.63e-11 65.1
MS.gene38362.t1 AT1G24420 24.569 464 265 19 6 425 5 427 3.63e-11 65.1

Find 99 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCGACGGCACCTCTTTC+TGG 0.148559 3.2:-84846686 MS.gene38362:CDS
TTCCATTTCCATCCTCTTTC+CGG 0.167351 3.2:-84846981 MS.gene38362:CDS
ATGAAATCTTGTTGGTTATT+TGG 0.171092 3.2:+84847050 None:intergenic
AATATGTATGGGAATGAATT+TGG 0.211414 3.2:-84846038 MS.gene38362:CDS
AAGCAAATTTGTTATTTAAC+AGG 0.266191 3.2:-84847143 MS.gene38362:CDS
CGTCGCCAATACAGTGATTC+AGG 0.271847 3.2:+84846700 None:intergenic
ATTTGCTTTGAATCTTCAAT+AGG 0.290643 3.2:+84847158 None:intergenic
TGTTTGAAGGGAAGGTTAAT+AGG 0.322567 3.2:+84846546 None:intergenic
ACTGAAAGTAAAGGCGAATA+AGG 0.331646 3.2:-84846442 MS.gene38362:CDS
AGATTTCATTGAGAATCTAT+TGG 0.350242 3.2:-84847036 MS.gene38362:CDS
TGAATCTTGCACCGGGGTTA+TGG 0.358731 3.2:+84846895 None:intergenic
GGAATTGCTTCAGAATAATC+TGG 0.363886 3.2:-84846217 MS.gene38362:CDS
CAATAGACTCCGGTGCAAAA+TGG 0.366621 3.2:+84846469 None:intergenic
TCACCAAGGTTCAATATGTA+TGG 0.368741 3.2:-84846050 MS.gene38362:CDS
TTTGCTTTGAATCTTCAATA+GGG 0.371311 3.2:+84847159 None:intergenic
AGGCTTTATCAGCACATGTT+TGG 0.374339 3.2:-84846389 MS.gene38362:CDS
GATTCTCAATGAAATCTTGT+TGG 0.378418 3.2:+84847042 None:intergenic
ATCAACGAAAATAGTATAAG+TGG 0.381161 3.2:+84846926 None:intergenic
ACTTGACACTGTGATACTTT+GGG 0.394360 3.2:+84846073 None:intergenic
GTGAAAAGGTAGACGCGAAA+TGG 0.400218 3.2:+84846599 None:intergenic
AACTTGACACTGTGATACTT+TGG 0.402547 3.2:+84846072 None:intergenic
TCCAATGCCCTCATTGCATT+AGG 0.403330 3.2:+84845903 None:intergenic
CCCTCATTGCATTAGGTGTA+AGG 0.405300 3.2:+84845910 None:intergenic
TCAATGCACTACATCCAAAA+AGG 0.406674 3.2:-84847101 MS.gene38362:CDS
TGAAAAGGTAGACGCGAAAT+GGG 0.427390 3.2:+84846600 None:intergenic
CACGATCGTTGGTTTCTACA+AGG 0.434379 3.2:-84846579 MS.gene38362:CDS
AAATTTGTTATTTAACAGGC+TGG 0.446269 3.2:-84847139 MS.gene38362:CDS
GGATATGCAAACAAATTTGA+TGG 0.446592 3.2:-84845987 MS.gene38362:CDS
TGAGCATGGAAGCATAGATT+TGG 0.460362 3.2:-84845940 MS.gene38362:CDS
AAACTCCTCATGATGTTTGA+AGG 0.463035 3.2:+84846533 None:intergenic
CGTTGGTTTCTACAAGGTTA+CGG 0.463520 3.2:-84846573 MS.gene38362:CDS
AAAGAGGATGGAAATGGAAA+AGG 0.466379 3.2:+84846985 None:intergenic
GGTAATGTATCATCATATCA+AGG 0.467204 3.2:-84845966 MS.gene38362:CDS
GGCCGGAAAGAGGATGGAAA+TGG 0.469243 3.2:+84846979 None:intergenic
ACAATTGGAGGAACATCAAC+CGG 0.476837 3.2:+84846831 None:intergenic
CTGGGGATGGGCAGCATGGA+AGG 0.477352 3.2:-84846198 MS.gene38362:CDS
TGTTCCCTGAATCACTGTAT+TGG 0.487778 3.2:-84846705 MS.gene38362:CDS
CGGAGAGAGGATATCAGATA+TGG 0.489115 3.2:+84846851 None:intergenic
CGACCGAGTTGGTATACAAC+AGG 0.497202 3.2:+84846107 None:intergenic
CCTCATGATGTTTGAAGGGA+AGG 0.506492 3.2:+84846538 None:intergenic
AAGAATCTATCTCTCAAGTT+CGG 0.508887 3.2:+84846492 None:intergenic
ACCTAATGCAATGAGGGCAT+TGG 0.513861 3.2:-84845904 MS.gene38362:CDS
TTCCCATACATATTGAACCT+TGG 0.519386 3.2:+84846047 None:intergenic
AATGGAAAAGGGCATGAGAG+AGG 0.519524 3.2:+84846997 None:intergenic
GAATTGCTTCAGAATAATCT+GGG 0.526803 3.2:-84846216 MS.gene38362:CDS
TGCATAGATGAATCTTGCAC+CGG 0.532803 3.2:+84846887 None:intergenic
AATTCAAGTCACAGAGCTAG+TGG 0.536764 3.2:-84846745 MS.gene38362:CDS
AAGAGGATGGAAATGGAAAA+GGG 0.539593 3.2:+84846986 None:intergenic
GAATCTTCAATAGGGTGTAG+TGG 0.541386 3.2:+84847167 None:intergenic
AGAAACCAACGATCGTGAAA+AGG 0.544715 3.2:+84846585 None:intergenic
TATGGGAATGAATTTGGAAT+GGG 0.545045 3.2:-84846032 MS.gene38362:CDS
ATGGAAAAGGGCATGAGAGA+GGG 0.546368 3.2:+84846998 None:intergenic
GTGACAAGACGGCCGGAAAG+AGG 0.547124 3.2:+84846969 None:intergenic
TATTGCAAAACTGAAAGTAA+AGG 0.547981 3.2:-84846451 MS.gene38362:CDS
CATATCTGATATCCTCTCTC+CGG 0.547986 3.2:-84846850 MS.gene38362:CDS
GCTTCAGAATAATCTGGGGA+TGG 0.552930 3.2:-84846211 MS.gene38362:CDS
CACCAAGGTTCAATATGTAT+GGG 0.561237 3.2:-84846049 MS.gene38362:CDS
AATTTGTTATTTAACAGGCT+GGG 0.563430 3.2:-84847138 MS.gene38362:CDS
AACTCCTCATGATGTTTGAA+GGG 0.567259 3.2:+84846534 None:intergenic
CGAAAATAGTATAAGTGGGA+GGG 0.567849 3.2:+84846931 None:intergenic
CAAGACGGCCGGAAAGAGGA+TGG 0.572452 3.2:+84846973 None:intergenic
GTCGCCAATACAGTGATTCA+GGG 0.572933 3.2:+84846701 None:intergenic
GCATAGATGAATCTTGCACC+GGG 0.575886 3.2:+84846888 None:intergenic
CTTCAGAATAATCTGGGGAT+GGG 0.576348 3.2:-84846210 MS.gene38362:CDS
CCTTACACCTAATGCAATGA+GGG 0.582114 3.2:-84845910 MS.gene38362:CDS
TAATCTGGGGATGGGCAGCA+TGG 0.583036 3.2:-84846202 MS.gene38362:CDS
TCATATCAAGGGTATGAGCA+TGG 0.589477 3.2:-84845954 MS.gene38362:CDS
CCTCATTGCATTAGGTGTAA+GGG 0.589724 3.2:+84845911 None:intergenic
TTTGTGAGTGACAAGACGGC+CGG 0.593267 3.2:+84846962 None:intergenic
CCTTCCCTTCAAACATCATG+AGG 0.593883 3.2:-84846538 MS.gene38362:CDS
GTATGGGAATGAATTTGGAA+TGG 0.594042 3.2:-84846033 MS.gene38362:CDS
TCAACGAAAATAGTATAAGT+GGG 0.595520 3.2:+84846927 None:intergenic
CTTGACACTGTGATACTTTG+GGG 0.607315 3.2:+84846074 None:intergenic
GATCAAAGTGGCGACCGAGT+TGG 0.615671 3.2:+84846096 None:intergenic
CCCTTACACCTAATGCAATG+AGG 0.616533 3.2:-84845911 MS.gene38362:CDS
CTGAATCACTGTATTGGCGA+CGG 0.619022 3.2:-84846699 MS.gene38362:CDS
CAAGTCACAGAGCTAGTGGA+TGG 0.621329 3.2:-84846741 MS.gene38362:CDS
ACGAAAATAGTATAAGTGGG+AGG 0.621520 3.2:+84846930 None:intergenic
GTAATGTATCATCATATCAA+GGG 0.623652 3.2:-84845965 MS.gene38362:CDS
ATGGAAGGTTAATGTGGCTG+TGG 0.624262 3.2:-84846183 MS.gene38362:CDS
GAGGAACATCAACCGGAGAG+AGG 0.629237 3.2:+84846838 None:intergenic
TTGAAGGGAAGGTTAATAGG+TGG 0.632790 3.2:+84846549 None:intergenic
TGATACTTTGGGGATCAAAG+TGG 0.645918 3.2:+84846084 None:intergenic
TCTCCTGTTGTATACCAACT+CGG 0.651878 3.2:-84846110 MS.gene38362:CDS
AGATGTGTCACACGTGCACG+CGG 0.655089 3.2:-84846366 MS.gene38362:CDS
GTGACTTGAATTGATAACAA+CGG 0.655100 3.2:+84846756 None:intergenic
GGCAGCATGGAAGGTTAATG+TGG 0.663013 3.2:-84846189 MS.gene38362:CDS
CGAGGAGTTCATGAATACTG+TGG 0.664706 3.2:-84845874 MS.gene38362:CDS
TAGTGCAGAAACGACTGTGG+AGG 0.677510 3.2:-84846238 MS.gene38362:CDS
GGTTAGTGCAGAAACGACTG+TGG 0.691168 3.2:-84846241 MS.gene38362:intron
TTGAATTGATAACAACGGCA+TGG 0.701648 3.2:+84846761 None:intergenic
GATTGCGGTAACCATAACCC+CGG 0.707381 3.2:-84846906 MS.gene38362:CDS
AAAGCGATAGCAGTTCTGAG+TGG 0.710377 3.2:-84846008 MS.gene38362:CDS
AACAAAGCAATCAACCACGA+CGG 0.711672 3.2:-84846789 MS.gene38362:CDS
AATTGCTTCAGAATAATCTG+GGG 0.714548 3.2:-84846215 MS.gene38362:CDS
GAGGGCATTGGAATTAGACG+AGG 0.715668 3.2:-84845892 MS.gene38362:CDS
ACGGCATGGTGTGACCGTCG+TGG 0.733894 3.2:+84846775 None:intergenic
TCACAGTGTCAAGTTCACCA+AGG 0.739939 3.2:-84846064 MS.gene38362:CDS
CATAGATGAATCTTGCACCG+GGG 0.755506 3.2:+84846889 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTGGAATTTTTTTAATATA+TGG - chr3.2:84846413-84846432 MS.gene38362:CDS 15.0%
!!! TTGTTTGTTTTTTGAATAAT+AGG + chr3.2:84846006-84846025 None:intergenic 15.0%
!! ATTAAAAAAATTCCAGAAAG+AGG + chr3.2:84846410-84846429 None:intergenic 20.0%
!! TATAAATAATCGACTAAGAT+TGG - chr3.2:84846774-84846793 MS.gene38362:CDS 20.0%
!!! AAGCAAATTTGTTATTTAAC+AGG - chr3.2:84845938-84845957 MS.gene38362:CDS 20.0%
! AACAAAAATATCTTCGTTTC+AGG - chr3.2:84846672-84846691 MS.gene38362:CDS 25.0%
! AATATGTATGGGAATGAATT+TGG - chr3.2:84847043-84847062 MS.gene38362:CDS 25.0%
! AGATTTCATTGAGAATCTAT+TGG - chr3.2:84846045-84846064 MS.gene38362:CDS 25.0%
! ATCAACGAAAATAGTATAAG+TGG + chr3.2:84846158-84846177 None:intergenic 25.0%
! ATTTATAGCTAACTTACAAC+TGG + chr3.2:84846761-84846780 None:intergenic 25.0%
! GTAATGTATCATCATATCAA+GGG - chr3.2:84847116-84847135 MS.gene38362:CDS 25.0%
! TATTGCAAAACTGAAAGTAA+AGG - chr3.2:84846630-84846649 MS.gene38362:CDS 25.0%
! TCAAAAAATGACTCAACAAT+TGG + chr3.2:84846268-84846287 None:intergenic 25.0%
! TCAACGAAAATAGTATAAGT+GGG + chr3.2:84846157-84846176 None:intergenic 25.0%
!! ATGAAATCTTGTTGGTTATT+TGG + chr3.2:84846034-84846053 None:intergenic 25.0%
!! ATTTGCTTTGAATCTTCAAT+AGG + chr3.2:84845926-84845945 None:intergenic 25.0%
!! TTTGCTTTGAATCTTCAATA+GGG + chr3.2:84845925-84845944 None:intergenic 25.0%
!! TTTTGAATAATAGGCCTTTT+TGG + chr3.2:84845997-84846016 None:intergenic 25.0%
!!! AAATTTGTTATTTAACAGGC+TGG - chr3.2:84845942-84845961 MS.gene38362:CDS 25.0%
!!! AATTTGTTATTTAACAGGCT+GGG - chr3.2:84845943-84845962 MS.gene38362:CDS 25.0%
!!! TATACTATTTTCGTTGATTG+CGG - chr3.2:84846160-84846179 MS.gene38362:CDS 25.0%
AAAAATGACTCAACAATTGG+AGG + chr3.2:84846265-84846284 None:intergenic 30.0%
AAGAATCTATCTCTCAAGTT+CGG + chr3.2:84846592-84846611 None:intergenic 30.0%
AATTGCTTCAGAATAATCTG+GGG - chr3.2:84846866-84846885 MS.gene38362:CDS 30.0%
GAATTGCTTCAGAATAATCT+GGG - chr3.2:84846865-84846884 MS.gene38362:CDS 30.0%
GATTCTCAATGAAATCTTGT+TGG + chr3.2:84846042-84846061 None:intergenic 30.0%
GGATATGCAAACAAATTTGA+TGG - chr3.2:84847094-84847113 MS.gene38362:CDS 30.0%
GGTAATGTATCATCATATCA+AGG - chr3.2:84847115-84847134 MS.gene38362:CDS 30.0%
! GTGACTTGAATTGATAACAA+CGG + chr3.2:84846328-84846347 None:intergenic 30.0%
! TATGGGAATGAATTTGGAAT+GGG - chr3.2:84847049-84847068 MS.gene38362:CDS 30.0%
AAACTCCTCATGATGTTTGA+AGG + chr3.2:84846551-84846570 None:intergenic 35.0%
AAAGAGGATGGAAATGGAAA+AGG + chr3.2:84846099-84846118 None:intergenic 35.0%
AACTCCTCATGATGTTTGAA+GGG + chr3.2:84846550-84846569 None:intergenic 35.0%
AACTTGACACTGTGATACTT+TGG + chr3.2:84847012-84847031 None:intergenic 35.0%
AAGAGGATGGAAATGGAAAA+GGG + chr3.2:84846098-84846117 None:intergenic 35.0%
ACGAAAATAGTATAAGTGGG+AGG + chr3.2:84846154-84846173 None:intergenic 35.0%
ACTGAAAGTAAAGGCGAATA+AGG - chr3.2:84846639-84846658 MS.gene38362:CDS 35.0%
ACTTGACACTGTGATACTTT+GGG + chr3.2:84847011-84847030 None:intergenic 35.0%
CACCAAGGTTCAATATGTAT+GGG - chr3.2:84847032-84847051 MS.gene38362:CDS 35.0%
CGAAAATAGTATAAGTGGGA+GGG + chr3.2:84846153-84846172 None:intergenic 35.0%
GGAATTGCTTCAGAATAATC+TGG - chr3.2:84846864-84846883 MS.gene38362:CDS 35.0%
GTATGGGAATGAATTTGGAA+TGG - chr3.2:84847048-84847067 MS.gene38362:CDS 35.0%
GTGTTTCCAAAATACTCTTG+TGG + chr3.2:84846811-84846830 None:intergenic 35.0%
TCAATGCACTACATCCAAAA+AGG - chr3.2:84845980-84845999 MS.gene38362:CDS 35.0%
TCACCAAGGTTCAATATGTA+TGG - chr3.2:84847031-84847050 MS.gene38362:CDS 35.0%
TGCGAAAGATGCTGAAAAAA+TGG - chr3.2:84846942-84846961 MS.gene38362:CDS 35.0%
TGTTTGAAGGGAAGGTTAAT+AGG + chr3.2:84846538-84846557 None:intergenic 35.0%
TTCCCATACATATTGAACCT+TGG + chr3.2:84847037-84847056 None:intergenic 35.0%
! TAGATTCTTCCATTTTGCAC+CGG - chr3.2:84846603-84846622 MS.gene38362:CDS 35.0%
! TTCAGTTTTGCAATAGACTC+CGG + chr3.2:84846625-84846644 None:intergenic 35.0%
! TTGAATTGATAACAACGGCA+TGG + chr3.2:84846323-84846342 None:intergenic 35.0%
AAATACTCTTGTGGCAAAGG+TGG + chr3.2:84846802-84846821 None:intergenic 40.0%
AACAAAGCAATCAACCACGA+CGG - chr3.2:84846292-84846311 MS.gene38362:intron 40.0%
AATTCAAGTCACAGAGCTAG+TGG - chr3.2:84846336-84846355 MS.gene38362:intron 40.0%
ACAATTGGAGGAACATCAAC+CGG + chr3.2:84846253-84846272 None:intergenic 40.0%
AGAAACCAACGATCGTGAAA+AGG + chr3.2:84846499-84846518 None:intergenic 40.0%
CATATCTGATATCCTCTCTC+CGG - chr3.2:84846231-84846250 MS.gene38362:CDS 40.0%
CCAAAATACTCTTGTGGCAA+AGG + chr3.2:84846805-84846824 None:intergenic 40.0%
CCTCATTGCATTAGGTGTAA+GGG + chr3.2:84847173-84847192 None:intergenic 40.0%
CCTTACACCTAATGCAATGA+GGG - chr3.2:84847171-84847190 MS.gene38362:CDS 40.0%
CTTCAGAATAATCTGGGGAT+GGG - chr3.2:84846871-84846890 MS.gene38362:CDS 40.0%
CTTGACACTGTGATACTTTG+GGG + chr3.2:84847010-84847029 None:intergenic 40.0%
GAATCTTCAATAGGGTGTAG+TGG + chr3.2:84845917-84845936 None:intergenic 40.0%
TCTCCTGTTGTATACCAACT+CGG - chr3.2:84846971-84846990 MS.gene38362:CDS 40.0%
TGAAAAGGTAGACGCGAAAT+GGG + chr3.2:84846484-84846503 None:intergenic 40.0%
TGCATAGATGAATCTTGCAC+CGG + chr3.2:84846197-84846216 None:intergenic 40.0%
TGTTCCCTGAATCACTGTAT+TGG - chr3.2:84846376-84846395 MS.gene38362:CDS 40.0%
TTCCATTTCCATCCTCTTTC+CGG - chr3.2:84846100-84846119 MS.gene38362:CDS 40.0%
TTGAAGGGAAGGTTAATAGG+TGG + chr3.2:84846535-84846554 None:intergenic 40.0%
! AGGCTTTATCAGCACATGTT+TGG - chr3.2:84846692-84846711 MS.gene38362:CDS 40.0%
! TCATATCAAGGGTATGAGCA+TGG - chr3.2:84847127-84847146 MS.gene38362:CDS 40.0%
! TGAGCATGGAAGCATAGATT+TGG - chr3.2:84847141-84847160 MS.gene38362:CDS 40.0%
! TGATACTTTGGGGATCAAAG+TGG + chr3.2:84847000-84847019 None:intergenic 40.0%
!! CGTTGGTTTCTACAAGGTTA+CGG - chr3.2:84846508-84846527 MS.gene38362:CDS 40.0%
!! CTAGTGGATGGTGTTTTCAT+AGG - chr3.2:84846352-84846371 MS.gene38362:CDS 40.0%
!! GAGTTTTGTGAGTGACAAGA+CGG + chr3.2:84846126-84846145 None:intergenic 40.0%
!! TTTTGGAAACACAGTTGACG+TGG - chr3.2:84846819-84846838 MS.gene38362:CDS 40.0%
!!! CCTTTGCCACAAGAGTATTT+TGG - chr3.2:84846802-84846821 MS.gene38362:CDS 40.0%
ATGGAAGGTTAATGTGGCTG+TGG - chr3.2:84846898-84846917 MS.gene38362:CDS 45.0%
CAATAGACTCCGGTGCAAAA+TGG + chr3.2:84846615-84846634 None:intergenic 45.0%
CATAGATGAATCTTGCACCG+GGG + chr3.2:84846195-84846214 None:intergenic 45.0%
CCCTCATTGCATTAGGTGTA+AGG + chr3.2:84847174-84847193 None:intergenic 45.0%
CCCTTACACCTAATGCAATG+AGG - chr3.2:84847170-84847189 MS.gene38362:CDS 45.0%
CCTCATGATGTTTGAAGGGA+AGG + chr3.2:84846546-84846565 None:intergenic 45.0%
CCTTCCCTTCAAACATCATG+AGG - chr3.2:84846543-84846562 MS.gene38362:CDS 45.0%
CGAGGAGTTCATGAATACTG+TGG - chr3.2:84847207-84847226 MS.gene38362:CDS 45.0%
CGGAGAGAGGATATCAGATA+TGG + chr3.2:84846233-84846252 None:intergenic 45.0%
GCATAGATGAATCTTGCACC+GGG + chr3.2:84846196-84846215 None:intergenic 45.0%
GCTTCAGAATAATCTGGGGA+TGG - chr3.2:84846870-84846889 MS.gene38362:CDS 45.0%
GTCGCCAATACAGTGATTCA+GGG + chr3.2:84846383-84846402 None:intergenic 45.0%
GTGAAAAGGTAGACGCGAAA+TGG + chr3.2:84846485-84846504 None:intergenic 45.0%
TCACAGTGTCAAGTTCACCA+AGG - chr3.2:84847017-84847036 MS.gene38362:CDS 45.0%
TCCAATGCCCTCATTGCATT+AGG + chr3.2:84847181-84847200 None:intergenic 45.0%
! AATGGAAAAGGGCATGAGAG+AGG + chr3.2:84846087-84846106 None:intergenic 45.0%
! ACCTAATGCAATGAGGGCAT+TGG - chr3.2:84847177-84847196 MS.gene38362:CDS 45.0%
! ATGGAAAAGGGCATGAGAGA+GGG + chr3.2:84846086-84846105 None:intergenic 45.0%
! CTGAATCACTGTATTGGCGA+CGG - chr3.2:84846382-84846401 MS.gene38362:CDS 45.0%
! GTCTACCTTTTCACGATCGT+TGG - chr3.2:84846491-84846510 MS.gene38362:CDS 45.0%
!! AAAGCGATAGCAGTTCTGAG+TGG - chr3.2:84847073-84847092 MS.gene38362:CDS 45.0%
!! CACGATCGTTGGTTTCTACA+AGG - chr3.2:84846502-84846521 MS.gene38362:CDS 45.0%
CAAGTCACAGAGCTAGTGGA+TGG - chr3.2:84846340-84846359 MS.gene38362:CDS 50.0%
CGTCGCCAATACAGTGATTC+AGG + chr3.2:84846384-84846403 None:intergenic 50.0%
GATTGCGGTAACCATAACCC+CGG - chr3.2:84846175-84846194 MS.gene38362:CDS 50.0%
GGCAGCATGGAAGGTTAATG+TGG - chr3.2:84846892-84846911 MS.gene38362:CDS 50.0%
GGTTAGTGCAGAAACGACTG+TGG - chr3.2:84846840-84846859 MS.gene38362:CDS 50.0%
TAGTGCAGAAACGACTGTGG+AGG - chr3.2:84846843-84846862 MS.gene38362:CDS 50.0%
TGAATCTTGCACCGGGGTTA+TGG + chr3.2:84846189-84846208 None:intergenic 50.0%
TTTGTGAGTGACAAGACGGC+CGG + chr3.2:84846122-84846141 None:intergenic 50.0%
!! CGACCGAGTTGGTATACAAC+AGG + chr3.2:84846977-84846996 None:intergenic 50.0%
!! GAGGGCATTGGAATTAGACG+AGG - chr3.2:84847189-84847208 MS.gene38362:CDS 50.0%
AGATGTGTCACACGTGCACG+CGG - chr3.2:84846715-84846734 MS.gene38362:CDS 55.0%
GAGGAACATCAACCGGAGAG+AGG + chr3.2:84846246-84846265 None:intergenic 55.0%
GATCAAAGTGGCGACCGAGT+TGG + chr3.2:84846988-84847007 None:intergenic 55.0%
GGCCGGAAAGAGGATGGAAA+TGG + chr3.2:84846105-84846124 None:intergenic 55.0%
TAATCTGGGGATGGGCAGCA+TGG - chr3.2:84846879-84846898 MS.gene38362:CDS 55.0%
CAAGACGGCCGGAAAGAGGA+TGG + chr3.2:84846111-84846130 None:intergenic 60.0%
GTGACAAGACGGCCGGAAAG+AGG + chr3.2:84846115-84846134 None:intergenic 60.0%
TTGGCGACGGCACCTCTTTC+TGG - chr3.2:84846395-84846414 MS.gene38362:CDS 60.0%
ACGGCATGGTGTGACCGTCG+TGG + chr3.2:84846309-84846328 None:intergenic 65.0%
CTGGGGATGGGCAGCATGGA+AGG - chr3.2:84846883-84846902 MS.gene38362:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 84845869 84847234 84845869 ID=MS.gene38362
chr3.2 mRNA 84845869 84847234 84845869 ID=MS.gene38362.t1;Parent=MS.gene38362
chr3.2 exon 84846340 84847234 84846340 ID=MS.gene38362.t1.exon1;Parent=MS.gene38362.t1
chr3.2 CDS 84846340 84847234 84846340 ID=cds.MS.gene38362.t1;Parent=MS.gene38362.t1
chr3.2 exon 84845869 84846257 84845869 ID=MS.gene38362.t1.exon2;Parent=MS.gene38362.t1
chr3.2 CDS 84845869 84846257 84845869 ID=cds.MS.gene38362.t1;Parent=MS.gene38362.t1
Gene Sequence

>MS.gene38362

ATGACTTCTTCTAGCGCTCAAACAGTTTCAGAATGTTTTATCAAACCACTACACCCTATTGAAGATTCAAAGCAAATTTGTTATTTAACAGGCTGGGATATTGCTATGTCATCAATGCACTACATCCAAAAAGGCCTATTATTCAAAAAACAAACAACTTCACCAAATAACCAACAAGATTTCATTGAGAATCTATTGGAGAAGCTTAAACACTCCCTCTCTCATGCCCTTTTCCATTTCCATCCTCTTTCCGGCCGTCTTGTCACTCACAAAACTCAAAACCCTCCCACTTATACTATTTTCGTTGATTGCGGTAACCATAACCCCGGTGCAAGATTCATCTATGCAACTGCAAACGTGACCATATCTGATATCCTCTCTCCGGTTGATGTTCCTCCAATTGTTGAGTCATTTTTTGATCTCAACAAAGCAATCAACCACGACGGTCACACCATGCCGTTGTTATCAATTCAAGTCACAGAGCTAGTGGATGGTGTTTTCATAGGTTGTTCCCTGAATCACTGTATTGGCGACGGCACCTCTTTCTGGAATTTTTTTAATATATGGTCTGAGATATTTCAATCTCAAAGTTGTGAAAATGAAAACGATGTTCCCATTTCGCGTCTACCTTTTCACGATCGTTGGTTTCTACAAGGTTACGGTCCACCTATTAACCTTCCCTTCAAACATCATGAGGAGTTTATCAGCAGATATGAATCTCCGAACTTGAGAGATAGATTCTTCCATTTTGCACCGGAGTCTATTGCAAAACTGAAAGTAAAGGCGAATAAGGAGTTTAACACAACAAAAATATCTTCGTTTCAGGCTTTATCAGCACATGTTTGGAGATGTGTCACACGTGCACGCGGACTAACAAATGATCGAAAAACCAGTTGTAAGTTAGCTATAAATAATCGACTAAGATTGGAACCACCTTTGCCACAAGAGTATTTTGGAAACACAGTTGACGTGGTTAGTGCAGAAACGACTGTGGAGGAATTGCTTCAGAATAATCTGGGGATGGGCAGCATGGAAGGTTAATGTGGCTGTGGTGAATCATGACGATAAAGAAGTGCGAAAGATGCTGAAAAAATGGTTAGAGTCTCCTGTTGTATACCAACTCGGTCGCCACTTTGATCCCCAAAGTATCACAGTGTCAAGTTCACCAAGGTTCAATATGTATGGGAATGAATTTGGAATGGGTAAAGCGATAGCAGTTCTGAGTGGATATGCAAACAAATTTGATGGTAATGTATCATCATATCAAGGGTATGAGCATGGAAGCATAGATTTGGCGTTGACCCTTACACCTAATGCAATGAGGGCATTGGAATTAGACGAGGAGTTCATGAATACTGTGGTTTGA
Protein sequence

>MS.gene38362.t1

MTSSSAQTVSECFIKPLHPIEDSKQICYLTGWDIAMSSMHYIQKGLLFKKQTTSPNNQQDFIENLLEKLKHSLSHALFHFHPLSGRLVTHKTQNPPTYTIFVDCGNHNPGARFIYATANVTISDILSPVDVPPIVESFFDLNKAINHDGHTMPLLSIQVTELVDGVFIGCSLNHCIGDGTSFWNFFNIWSEIFQSQSCENENDVPISRLPFHDRWFLQGYGPPINLPFKHHEEFISRYESPNLRDRFFHFAPESIAKLKVKANKEFNTTKISSFQALSAHVWRCVTRARGLTNDRKTSLQKRLWRNCFRIIWGWAAWKVNVAVVNHDDKEVRKMLKKWLESPVVYQLGRHFDPQSITVSSSPRFNMYGNEFGMGKAIAVLSGYANKFDGNVSSYQGYEHGSIDLALTLTPNAMRALELDEEFMNTVV