AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38701

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38701.t1 MTR_3g102020 86.319 307 42 0 1 307 151 457 0.0 571
MS.gene38701.t1 MTR_3g101960 89.865 296 30 0 1 296 150 445 0.0 566
MS.gene38701.t1 MTR_3g101970 84.768 302 32 1 1 302 151 438 0.0 544
MS.gene38701.t1 MTR_3g102010 80.064 311 58 1 1 307 147 457 0.0 526
MS.gene38701.t1 MTR_3g101900 67.881 302 96 1 1 302 149 449 1.65e-145 417
MS.gene38701.t1 MTR_3g101930 63.518 307 100 3 1 300 153 454 6.03e-140 403
MS.gene38701.t1 MTR_3g102030 73.622 254 41 2 1 254 93 320 3.78e-134 383
MS.gene38701.t1 MTR_4g015180 41.880 351 151 4 1 301 140 487 6.32e-78 246
MS.gene38701.t1 MTR_3g070170 39.941 338 144 7 3 297 145 466 6.30e-75 237
MS.gene38701.t1 MTR_5g081960 39.542 349 151 6 3 297 140 482 1.73e-74 237
MS.gene38701.t1 MTR_8g041770 40.924 303 171 5 1 301 145 441 1.24e-68 220
MS.gene38701.t1 MTR_0190s0020 40.196 306 166 6 3 301 147 442 2.15e-64 209
MS.gene38701.t1 MTR_4g094835 39.130 299 172 4 3 297 150 442 3.33e-64 209
MS.gene38701.t1 MTR_4g094842 40.667 300 166 7 3 297 152 444 5.87e-64 208
MS.gene38701.t1 MTR_4g022800 39.228 311 171 7 3 301 138 442 3.84e-62 203
MS.gene38701.t1 MTR_4g094832 39.535 301 168 5 3 297 134 426 6.76e-62 202
MS.gene38701.t1 MTR_4g022825 37.540 309 177 5 3 301 138 440 7.87e-61 200
MS.gene38701.t1 MTR_4g094838 38.462 299 158 4 3 297 152 428 1.47e-60 199
MS.gene38701.t1 MTR_4g022720 39.604 303 174 5 3 301 138 435 2.08e-60 199
MS.gene38701.t1 MTR_4g022670 37.217 309 179 5 3 301 138 441 2.59e-59 196
MS.gene38701.t1 MTR_3g088420 37.705 305 175 6 3 301 138 433 5.35e-58 192
MS.gene38701.t1 MTR_3g026310 38.291 316 173 7 3 301 138 448 7.29e-58 192
MS.gene38701.t1 MTR_7g026860 36.774 310 176 7 3 301 138 438 1.36e-55 186
MS.gene38701.t1 MTR_6g045553 33.528 343 169 6 3 300 146 474 9.92e-53 179
MS.gene38701.t1 MTR_4g094828 35.962 317 178 11 3 302 143 451 3.27e-50 172
MS.gene38701.t1 MTR_4g022290 34.708 291 167 8 3 280 144 424 4.78e-47 164
MS.gene38701.t1 MTR_8g079710 35.962 317 166 14 3 300 143 441 3.96e-46 161
MS.gene38701.t1 MTR_8g040780 36.967 211 128 4 91 298 20 228 2.62e-41 144
MS.gene38701.t1 MTR_4g022760 35.361 263 145 7 3 242 138 398 3.12e-40 145
MS.gene38701.t1 MTR_2g064495 28.904 301 196 7 3 291 132 426 5.44e-30 118
MS.gene38701.t1 MTR_8g075610 27.687 307 189 7 3 291 123 414 7.94e-30 117
MS.gene38701.t1 MTR_2g105330 28.667 300 198 7 3 291 132 426 1.18e-29 117
MS.gene38701.t1 MTR_7g026770 37.288 177 90 3 6 182 132 287 1.52e-26 106
MS.gene38701.t1 MTR_4g007540 28.239 301 199 7 3 291 132 427 1.66e-26 108
MS.gene38701.t1 MTR_6g016815 30.000 300 139 8 3 301 152 381 1.72e-26 107
MS.gene38701.t1 MTR_4g094825 34.503 171 101 2 131 301 232 391 4.85e-26 106
MS.gene38701.t1 MTR_3g098980 28.767 219 139 5 1 209 142 353 1.38e-20 91.7
MS.gene38701.t1 MTR_4g097090 26.282 312 189 10 1 282 140 440 4.28e-19 87.4
MS.gene38701.t1 MTR_8g096530 28.889 225 137 6 1 212 135 349 8.47e-19 86.7
MS.gene38701.t1 MTR_4g127650 29.384 211 122 5 93 282 236 440 2.56e-18 85.1
MS.gene38701.t1 MTR_3g049150 25.733 307 190 9 14 291 143 440 3.20e-18 85.1
MS.gene38701.t1 MTR_6g034485 34.646 127 76 2 56 178 2 125 5.82e-18 79.0
MS.gene38701.t1 MTR_3g026950 27.039 233 138 7 1 209 128 352 6.59e-17 81.3
MS.gene38701.t1 MTR_1g040195 28.467 274 173 9 3 269 119 376 3.49e-16 79.0
MS.gene38701.t1 MTR_6g053810 28.788 198 134 6 4 195 153 349 2.57e-14 73.6
MS.gene38701.t1 MTR_1g040175 27.957 279 172 12 3 270 142 402 4.00e-13 69.7
MS.gene38701.t1 MTR_3g049140 24.242 198 136 4 93 276 27 224 2.39e-12 66.2
MS.gene38701.t1 MTR_7g114470 24.832 298 197 11 6 287 147 433 2.44e-12 67.4
MS.gene38701.t1 MTR_7g027175 27.602 221 140 7 1 209 144 356 4.08e-12 66.6
MS.gene38701.t1 MTR_7g084940 24.017 229 142 7 1 214 145 356 5.77e-12 66.2
MS.gene38701.t1 MTR_2g015430 24.000 200 147 3 14 209 148 346 7.79e-12 65.9
MS.gene38701.t1 MTR_3g465980 26.702 191 128 5 4 185 147 334 1.25e-11 65.5
MS.gene38701.t1 MTR_4g013050 23.794 311 181 9 1 291 129 403 1.64e-11 64.7
MS.gene38701.t1 MTR_7g114960 25.817 306 206 9 6 297 146 444 2.25e-11 64.7
MS.gene38701.t1 MTR_1g081660 25.974 308 197 10 3 294 151 443 3.06e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38701.t1 AT5G42830 53.896 308 133 2 1 302 146 450 9.60e-121 354
MS.gene38701.t1 AT5G07850 54.636 302 136 1 1 301 152 453 1.29e-120 354
MS.gene38701.t1 AT5G07860 54.636 302 129 3 1 300 153 448 4.23e-112 332
MS.gene38701.t1 AT5G07870 50.321 312 140 2 1 301 154 461 3.16e-105 315
MS.gene38701.t1 AT5G01210 42.730 337 150 4 3 303 142 471 2.16e-81 254
MS.gene38701.t1 AT2G39980 40.634 347 151 6 3 301 141 480 7.21e-74 235
MS.gene38701.t1 AT5G67150 40.717 307 173 6 2 303 146 448 7.13e-67 216
MS.gene38701.t1 AT3G50280 37.209 301 178 6 3 297 14 309 4.87e-54 179
MS.gene38701.t1 AT3G50270 35.484 310 187 6 1 302 145 449 1.56e-53 181
MS.gene38701.t1 AT3G50280 37.209 301 178 6 3 297 144 439 1.33e-52 179
MS.gene38701.t1 AT5G38130 36.140 285 172 6 3 283 165 443 1.07e-47 166
MS.gene38701.t1 AT5G67160 33.444 302 195 4 2 303 139 434 3.19e-47 164
MS.gene38701.t1 AT3G50300 35.294 289 171 6 3 283 145 425 1.31e-46 163
MS.gene38701.t1 AT5G23940 33.871 310 185 6 3 299 148 450 9.97e-46 161
MS.gene38701.t1 AT3G50290 38.189 254 144 6 3 247 20 269 1.12e-43 150
MS.gene38701.t1 AT5G48930 29.085 306 190 8 3 291 132 427 6.83e-29 115
MS.gene38701.t1 AT2G19070 28.302 318 178 12 1 282 132 435 3.18e-23 99.4
MS.gene38701.t1 AT5G41040 29.412 221 132 6 4 209 148 359 4.40e-21 93.2
MS.gene38701.t1 AT5G41040 29.680 219 134 7 4 209 164 375 4.84e-21 93.2
MS.gene38701.t1 AT3G48720 29.302 215 133 6 6 209 143 349 1.22e-17 83.2
MS.gene38701.t1 AT2G40230 27.957 279 159 9 4 260 139 397 1.33e-15 77.4
MS.gene38701.t1 AT5G63560 28.837 215 129 6 6 209 144 345 4.43e-15 75.5
MS.gene38701.t1 AT1G28680 27.358 212 141 6 6 209 143 349 1.30e-14 74.3
MS.gene38701.t1 AT1G28680 25.843 267 162 9 6 264 143 381 1.59e-14 73.9
MS.gene38701.t1 AT1G65450 28.571 203 118 7 3 186 150 344 4.03e-14 72.8
MS.gene38701.t1 AT1G65450 28.191 188 109 6 17 186 1 180 2.58e-13 69.3
MS.gene38701.t1 AT1G31490 26.603 312 196 13 4 296 135 432 9.88e-13 68.6

Find 72 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTTCCTATGGAATATTT+TGG 0.104357 3.3:-84372501 MS.gene38701:CDS
GAAGATTCTCTCTCTTAAAA+TGG 0.176499 3.3:+84372713 None:intergenic
GATATGTATGGGAATGAATT+TGG 0.246345 3.3:-84372261 MS.gene38701:CDS
CACGAGTTTGTTCACAGATA+TGG 0.276316 3.3:-84372741 MS.gene38701:CDS
AATCTTTATCGACATTAGTT+TGG 0.302477 3.3:-84372611 MS.gene38701:CDS
TTTGTGATGGAACATCTTAT+TGG 0.327832 3.3:-84372899 MS.gene38701:CDS
AGGAAGAGACGGTTCCATTC+TGG 0.332243 3.3:+84372515 None:intergenic
CTACCCATCATCACAGTATA+AGG 0.338076 3.3:+84372297 None:intergenic
CTGAATGGAAGGTTGATAAT+TGG 0.355003 3.3:+84372771 None:intergenic
ATAATTGGACCATAACCTTC+TGG 0.355852 3.3:+84372786 None:intergenic
TCACCAAGGTTTGATATGTA+TGG 0.364571 3.3:-84372273 MS.gene38701:CDS
TCAGAGAACAACTTGCAAAA+TGG 0.387577 3.3:-84372553 MS.gene38701:CDS
ACCTGAGAAAATGATGTTGC+TGG 0.395295 3.3:-84372124 MS.gene38701:CDS
TTGGCAGTTAGAAGTGGATA+TGG 0.407750 3.3:-84372225 MS.gene38701:CDS
GGATATGGTAACAAATTTGA+TGG 0.408937 3.3:-84372210 MS.gene38701:CDS
AGATGGTTTCCAGAAGGTTA+TGG 0.413058 3.3:-84372795 MS.gene38701:CDS
TACTAATTCCGTGACTTGAA+TGG 0.413436 3.3:+84372959 None:intergenic
ATCACAAAGACAATGATTCA+TGG 0.414110 3.3:+84372914 None:intergenic
GTGGATAGGTTGATGTGAAA+TGG 0.419118 3.3:+84372821 None:intergenic
TGTGAAATGGGAACAGGAAC+AGG 0.419606 3.3:+84372834 None:intergenic
ATCAACCTATCCACAATAGA+TGG 0.431811 3.3:-84372812 MS.gene38701:CDS
AACGACGGTAGGGGAGTTGC+TGG 0.437091 3.3:-84372451 MS.gene38701:CDS
AATGGAACCGTCTCTTCCTA+TGG 0.454576 3.3:-84372511 MS.gene38701:CDS
TGATCCTTATACTGTGATGA+TGG 0.457143 3.3:-84372301 MS.gene38701:CDS
AAGATTCTCTCTCTTAAAAT+GGG 0.470281 3.3:+84372714 None:intergenic
GGTTGATGTGAAATGGGAAC+AGG 0.481011 3.3:+84372828 None:intergenic
TGGATAGGTTGATGTGAAAT+GGG 0.483941 3.3:+84372822 None:intergenic
CACCAAGGTTTGATATGTAT+GGG 0.491264 3.3:-84372272 MS.gene38701:CDS
GAGTTGCTGGAGAATGATCT+AGG 0.495895 3.3:-84372438 MS.gene38701:CDS
TGCAGTGAGTGCTGAAACGA+CGG 0.506205 3.3:-84372466 MS.gene38701:CDS
ATGAATCATTGTCTTTGTGA+TGG 0.517463 3.3:-84372912 MS.gene38701:CDS
CAAGTCACGGAATTAGTAGA+AGG 0.518736 3.3:-84372954 MS.gene38701:CDS
TATGGGAATGAATTTGGAAT+GGG 0.522099 3.3:-84372255 MS.gene38701:CDS
TGCTGGAGAATGATCTAGGA+TGG 0.522825 3.3:-84372434 MS.gene38701:CDS
AAATCTGTTTGATACACAAA+AGG 0.526852 3.3:+84372330 None:intergenic
ATTTGGAATGGGAAAAGCAT+TGG 0.528592 3.3:-84372244 MS.gene38701:CDS
CTCCCACCTCCTTCTTGACC+AGG 0.534392 3.3:+84372171 None:intergenic
TTTGTTATCCATTCAAGTCA+CGG 0.537363 3.3:-84372967 MS.gene38701:CDS
GGAAAAGTAACATCATATCC+TGG 0.542782 3.3:-84372189 MS.gene38701:CDS
GGAAACCATCTATTGTGGAT+AGG 0.548035 3.3:+84372807 None:intergenic
TTCCCATACATATCAAACCT+TGG 0.550842 3.3:+84372270 None:intergenic
TGAGTGCTGAAACGACGGTA+GGG 0.557272 3.3:-84372461 MS.gene38701:CDS
AACTCGTGGTGATGTCTGAA+TGG 0.560978 3.3:+84372756 None:intergenic
ACATCATATCCTGGTCAAGA+AGG 0.563921 3.3:-84372180 MS.gene38701:CDS
TACAAACAATCGAACCAGAA+TGG 0.569053 3.3:-84372529 MS.gene38701:CDS
ATGATCTAGGATGGGCAGCA+TGG 0.569534 3.3:-84372425 MS.gene38701:CDS
GTATGGGAATGAATTTGGAA+TGG 0.573460 3.3:-84372256 MS.gene38701:CDS
TATCCTGGTCAAGAAGGAGG+TGG 0.578330 3.3:-84372174 MS.gene38701:CDS
TATAGCGAAACTTAAAGCAA+AGG 0.578915 3.3:-84372673 MS.gene38701:CDS
AGTAAATCATGATGATAAAG+TGG 0.584307 3.3:-84372385 MS.gene38701:CDS
CACAATAGATGGTTTCCAGA+AGG 0.584706 3.3:-84372801 MS.gene38701:CDS
GAGTGCTGAAACGACGGTAG+GGG 0.587996 3.3:-84372460 MS.gene38701:CDS
GATCCTTATACTGTGATGAT+GGG 0.589918 3.3:-84372300 MS.gene38701:CDS
TGCGTAGGTCGGTTGAAGAG+TGG 0.594966 3.3:-84372362 MS.gene38701:CDS
CTTCTGGAAACCATCTATTG+TGG 0.595445 3.3:+84372802 None:intergenic
AAAGCATTGGCAGTTAGAAG+TGG 0.597903 3.3:-84372231 MS.gene38701:CDS
CGTGGTGATGTCTGAATGGA+AGG 0.603528 3.3:+84372760 None:intergenic
GAATTCCCAAAATATTCCAT+AGG 0.609589 3.3:+84372495 None:intergenic
CATAGTCAAAGACTAGAACA+AGG 0.612945 3.3:+84372059 None:intergenic
ATAGTCAAAGACTAGAACAA+GGG 0.614137 3.3:+84372060 None:intergenic
GTGAGTGCTGAAACGACGGT+AGG 0.617964 3.3:-84372462 MS.gene38701:CDS
ATCCTGGTCAAGAAGGAGGT+GGG 0.618629 3.3:-84372173 MS.gene38701:CDS
AAATATTCCATAGGAAGAGA+CGG 0.619061 3.3:+84372504 None:intergenic
GCTGGAGAATGATCTAGGAT+GGG 0.629384 3.3:-84372433 MS.gene38701:CDS
ATGATGATAAAGTGGTGCGT+AGG 0.641507 3.3:-84372377 MS.gene38701:CDS
TCATATCCTGGTCAAGAAGG+AGG 0.649960 3.3:-84372177 MS.gene38701:CDS
GTGAAATGGGAACAGGAACA+GGG 0.661711 3.3:+84372835 None:intergenic
TGATAAAGTGGTGCGTAGGT+CGG 0.663573 3.3:-84372373 MS.gene38701:CDS
CATATCTGTGAACAAACTCG+TGG 0.673967 3.3:+84372742 None:intergenic
TGATGATGGGTAGTTCACCA+AGG 0.700661 3.3:-84372287 MS.gene38701:CDS
TTGAATGGATAACAAAGACA+TGG 0.701650 3.3:+84372974 None:intergenic
CGTGCACGTCAACTACAACA+CGG 0.729878 3.3:-84372576 MS.gene38701:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAATCTGTTTGATACACAAA+AGG + chr3.3:84372716-84372735 None:intergenic 25.0%
! AAGATTCTCTCTCTTAAAAT+GGG + chr3.3:84372332-84372351 None:intergenic 25.0%
! AATCTTTATCGACATTAGTT+TGG - chr3.3:84372432-84372451 MS.gene38701:CDS 25.0%
! AGTAAATCATGATGATAAAG+TGG - chr3.3:84372658-84372677 MS.gene38701:CDS 25.0%
AAATATTCCATAGGAAGAGA+CGG + chr3.3:84372542-84372561 None:intergenic 30.0%
ATCACAAAGACAATGATTCA+TGG + chr3.3:84372132-84372151 None:intergenic 30.0%
ATGAATCATTGTCTTTGTGA+TGG - chr3.3:84372131-84372150 MS.gene38701:CDS 30.0%
GAAGATTCTCTCTCTTAAAA+TGG + chr3.3:84372333-84372352 None:intergenic 30.0%
GAATTCCCAAAATATTCCAT+AGG + chr3.3:84372551-84372570 None:intergenic 30.0%
GATATGTATGGGAATGAATT+TGG - chr3.3:84372782-84372801 MS.gene38701:CDS 30.0%
GGATATGGTAACAAATTTGA+TGG - chr3.3:84372833-84372852 MS.gene38701:CDS 30.0%
TATAGCGAAACTTAAAGCAA+AGG - chr3.3:84372370-84372389 MS.gene38701:CDS 30.0%
! CTCTTCCTATGGAATATTTT+GGG - chr3.3:84372543-84372562 MS.gene38701:CDS 30.0%
! TATGGGAATGAATTTGGAAT+GGG - chr3.3:84372788-84372807 MS.gene38701:CDS 30.0%
! TCTCTTCCTATGGAATATTT+TGG - chr3.3:84372542-84372561 MS.gene38701:CDS 30.0%
! TTTGTGATGGAACATCTTAT+TGG - chr3.3:84372144-84372163 MS.gene38701:CDS 30.0%
! TTTGTTATCCATTCAAGTCA+CGG - chr3.3:84372076-84372095 MS.gene38701:CDS 30.0%
!!! TTAGTAGAAGGTGTTTTCAT+CGG - chr3.3:84372101-84372120 MS.gene38701:CDS 30.0%
ATAATTGGACCATAACCTTC+TGG + chr3.3:84372260-84372279 None:intergenic 35.0%
ATCAACCTATCCACAATAGA+TGG - chr3.3:84372231-84372250 MS.gene38701:CDS 35.0%
CACCAAGGTTTGATATGTAT+GGG - chr3.3:84372771-84372790 MS.gene38701:CDS 35.0%
CTATAGATTCCGCTGAAAAA+TGG + chr3.3:84372355-84372374 None:intergenic 35.0%
GATCCTTATACTGTGATGAT+GGG - chr3.3:84372743-84372762 MS.gene38701:CDS 35.0%
GGAAAAGTAACATCATATCC+TGG - chr3.3:84372854-84372873 MS.gene38701:CDS 35.0%
GTATGGGAATGAATTTGGAA+TGG - chr3.3:84372787-84372806 MS.gene38701:CDS 35.0%
TACAAACAATCGAACCAGAA+TGG - chr3.3:84372514-84372533 MS.gene38701:CDS 35.0%
TACTAATTCCGTGACTTGAA+TGG + chr3.3:84372087-84372106 None:intergenic 35.0%
TCACCAAGGTTTGATATGTA+TGG - chr3.3:84372770-84372789 MS.gene38701:CDS 35.0%
TCAGAGAACAACTTGCAAAA+TGG - chr3.3:84372490-84372509 MS.gene38701:CDS 35.0%
TGATCCTTATACTGTGATGA+TGG - chr3.3:84372742-84372761 MS.gene38701:CDS 35.0%
TTCCCATACATATCAAACCT+TGG + chr3.3:84372776-84372795 None:intergenic 35.0%
! ATTTGGAATGGGAAAAGCAT+TGG - chr3.3:84372799-84372818 MS.gene38701:CDS 35.0%
!! CTGAATGGAAGGTTGATAAT+TGG + chr3.3:84372275-84372294 None:intergenic 35.0%
!! GAGAATCTTCCATTTTTCAG+CGG - chr3.3:84372343-84372362 MS.gene38701:CDS 35.0%
!! TGGATAGGTTGATGTGAAAT+GGG + chr3.3:84372224-84372243 None:intergenic 35.0%
ACATCATATCCTGGTCAAGA+AGG - chr3.3:84372863-84372882 MS.gene38701:CDS 40.0%
ACCTGAGAAAATGATGTTGC+TGG - chr3.3:84372919-84372938 MS.gene38701:CDS 40.0%
AGATGGTTTCCAGAAGGTTA+TGG - chr3.3:84372248-84372267 MS.gene38701:CDS 40.0%
ATGATGATAAAGTGGTGCGT+AGG - chr3.3:84372666-84372685 MS.gene38701:CDS 40.0%
CAAGTCACGGAATTAGTAGA+AGG - chr3.3:84372089-84372108 MS.gene38701:CDS 40.0%
CACAATAGATGGTTTCCAGA+AGG - chr3.3:84372242-84372261 MS.gene38701:CDS 40.0%
CATATCTGTGAACAAACTCG+TGG + chr3.3:84372304-84372323 None:intergenic 40.0%
CTACCCATCATCACAGTATA+AGG + chr3.3:84372749-84372768 None:intergenic 40.0%
GGAAACCATCTATTGTGGAT+AGG + chr3.3:84372239-84372258 None:intergenic 40.0%
TTGGCAGTTAGAAGTGGATA+TGG - chr3.3:84372818-84372837 MS.gene38701:CDS 40.0%
! CACGAGTTTGTTCACAGATA+TGG - chr3.3:84372302-84372321 MS.gene38701:CDS 40.0%
! CTTCTGGAAACCATCTATTG+TGG + chr3.3:84372244-84372263 None:intergenic 40.0%
! TCCAGCAACATCATTTTCTC+AGG + chr3.3:84372923-84372942 None:intergenic 40.0%
!! AAAGCATTGGCAGTTAGAAG+TGG - chr3.3:84372812-84372831 MS.gene38701:CDS 40.0%
!! GTGGATAGGTTGATGTGAAA+TGG + chr3.3:84372225-84372244 None:intergenic 40.0%
AATGGAACCGTCTCTTCCTA+TGG - chr3.3:84372532-84372551 MS.gene38701:CDS 45.0%
GAGTTGCTGGAGAATGATCT+AGG - chr3.3:84372605-84372624 MS.gene38701:CDS 45.0%
GTGAAATGGGAACAGGAACA+GGG + chr3.3:84372211-84372230 None:intergenic 45.0%
TCATATCCTGGTCAAGAAGG+AGG - chr3.3:84372866-84372885 MS.gene38701:CDS 45.0%
TGATAAAGTGGTGCGTAGGT+CGG - chr3.3:84372670-84372689 MS.gene38701:CDS 45.0%
TGCTGGAGAATGATCTAGGA+TGG - chr3.3:84372609-84372628 MS.gene38701:CDS 45.0%
TGTGAAATGGGAACAGGAAC+AGG + chr3.3:84372212-84372231 None:intergenic 45.0%
! AACTCGTGGTGATGTCTGAA+TGG + chr3.3:84372290-84372309 None:intergenic 45.0%
! GCTGGAGAATGATCTAGGAT+GGG - chr3.3:84372610-84372629 MS.gene38701:CDS 45.0%
! GGTTGATGTGAAATGGGAAC+AGG + chr3.3:84372218-84372237 None:intergenic 45.0%
!! TGATGATGGGTAGTTCACCA+AGG - chr3.3:84372756-84372775 MS.gene38701:CDS 45.0%
AGGAAGAGACGGTTCCATTC+TGG + chr3.3:84372531-84372550 None:intergenic 50.0%
ATCCTGGTCAAGAAGGAGGT+GGG - chr3.3:84372870-84372889 MS.gene38701:CDS 50.0%
CGTGCACGTCAACTACAACA+CGG - chr3.3:84372467-84372486 MS.gene38701:CDS 50.0%
TATCCTGGTCAAGAAGGAGG+TGG - chr3.3:84372869-84372888 MS.gene38701:CDS 50.0%
! ATGATCTAGGATGGGCAGCA+TGG - chr3.3:84372618-84372637 MS.gene38701:CDS 50.0%
! CGTGGTGATGTCTGAATGGA+AGG + chr3.3:84372286-84372305 None:intergenic 50.0%
!! TGAGTGCTGAAACGACGGTA+GGG - chr3.3:84372582-84372601 MS.gene38701:CDS 50.0%
!! TGCAGTGAGTGCTGAAACGA+CGG - chr3.3:84372577-84372596 MS.gene38701:CDS 50.0%
TGCGTAGGTCGGTTGAAGAG+TGG - chr3.3:84372681-84372700 MS.gene38701:CDS 55.0%
!! GAGTGCTGAAACGACGGTAG+GGG - chr3.3:84372583-84372602 MS.gene38701:CDS 55.0%
!! GTGAGTGCTGAAACGACGGT+AGG - chr3.3:84372581-84372600 MS.gene38701:CDS 55.0%
AACGACGGTAGGGGAGTTGC+TGG - chr3.3:84372592-84372611 MS.gene38701:CDS 60.0%
CTCCCACCTCCTTCTTGACC+AGG + chr3.3:84372875-84372894 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 84372071 84372994 84372071 ID=MS.gene38701
chr3.3 mRNA 84372071 84372994 84372071 ID=MS.gene38701.t1;Parent=MS.gene38701
chr3.3 exon 84372071 84372994 84372071 ID=MS.gene38701.t1.exon1;Parent=MS.gene38701.t1
chr3.3 CDS 84372071 84372994 84372071 ID=cds.MS.gene38701.t1;Parent=MS.gene38701.t1
Gene Sequence

>MS.gene38701

ATGTCTTTGTTATCCATTCAAGTCACGGAATTAGTAGAAGGTGTTTTCATCGGTTGTTCCATGAATCATTGTCTTTGTGATGGAACATCTTATTGGAATTTCTTCAACACATTTTCTGAGATATTTCAAAATGACGTCCCTGTTCCTGTTCCCATTTCACATCAACCTATCCACAATAGATGGTTTCCAGAAGGTTATGGTCCAATTATCAACCTTCCATTCAGACATCACCACGAGTTTGTTCACAGATATGGAATACCCATTTTAAGAGAGAGAATCTTCCATTTTTCAGCGGAATCTATAGCGAAACTTAAAGCAAAGGCAAATGCAGAGTCTAATACAAACAAAATTTCTTCGTTTCAATCTTTATCGACATTAGTTTGGAGATCTATAACTCGTGCACGTCAACTACAACACGGTCAGAGAACAACTTGCAAAATGGCTACAAACAATCGAACCAGAATGGAACCGTCTCTTCCTATGGAATATTTTGGGAATTCACTTTATGCAGTGAGTGCTGAAACGACGGTAGGGGAGTTGCTGGAGAATGATCTAGGATGGGCAGCATGGAAAATTCATCTAGCTGTAGTAAATCATGATGATAAAGTGGTGCGTAGGTCGGTTGAAGAGTGGTTTCGTTCTCCTTTTGTGTATCAAACAGATTTGTTTTTTGATCCTTATACTGTGATGATGGGTAGTTCACCAAGGTTTGATATGTATGGGAATGAATTTGGAATGGGAAAAGCATTGGCAGTTAGAAGTGGATATGGTAACAAATTTGATGGAAAAGTAACATCATATCCTGGTCAAGAAGGAGGTGGGAGCGTTGATCTTGAAGTGTGTCTTTCACCTGAGAAAATGATGTTGCTGGAAGCAGATGAAGAGTTCATGAATTCAGTTTCTGTGATTAATCCCTTGTTCTAG
Protein sequence

>MS.gene38701.t1

MSLLSIQVTELVEGVFIGCSMNHCLCDGTSYWNFFNTFSEIFQNDVPVPVPISHQPIHNRWFPEGYGPIINLPFRHHHEFVHRYGIPILRERIFHFSAESIAKLKAKANAESNTNKISSFQSLSTLVWRSITRARQLQHGQRTTCKMATNNRTRMEPSLPMEYFGNSLYAVSAETTVGELLENDLGWAAWKIHLAVVNHDDKVVRRSVEEWFRSPFVYQTDLFFDPYTVMMGSSPRFDMYGNEFGMGKALAVRSGYGNKFDGKVTSYPGQEGGGSVDLEVCLSPEKMMLLEADEEFMNSVSVINPLF