AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38702


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38702.t1 MTR_3g101960 92.105 456 36 0 1 456 1 456 0.0 887
MS.gene38702.t1 MTR_3g102020 85.650 446 63 1 1 445 1 446 0.0 807
MS.gene38702.t1 MTR_3g101970 86.547 446 45 2 1 445 1 432 0.0 799
MS.gene38702.t1 MTR_3g102010 80.401 449 80 2 1 445 2 446 0.0 751
MS.gene38702.t1 MTR_3g101900 68.374 449 131 4 1 445 2 443 0.0 625
MS.gene38702.t1 MTR_3g101930 67.489 446 131 5 9 445 10 450 0.0 617
MS.gene38702.t1 MTR_3g102030 74.528 318 55 2 86 403 29 320 4.76e-173 488
MS.gene38702.t1 MTR_4g015180 40.404 495 224 11 5 445 5 482 1.03e-101 312
MS.gene38702.t1 MTR_3g070170 38.969 485 222 14 5 445 11 465 2.55e-100 308
MS.gene38702.t1 MTR_5g081960 38.540 493 229 12 8 445 8 481 3.08e-94 293
MS.gene38702.t1 MTR_4g094842 38.512 457 253 11 3 445 1 443 7.53e-92 286
MS.gene38702.t1 MTR_4g022720 39.535 430 240 9 21 445 16 430 5.79e-85 268
MS.gene38702.t1 MTR_4g022800 37.900 438 243 12 21 445 16 437 3.04e-84 266
MS.gene38702.t1 MTR_4g094835 37.939 427 246 7 25 445 28 441 3.29e-84 266
MS.gene38702.t1 MTR_8g041770 38.810 420 241 10 29 445 30 436 8.26e-84 265
MS.gene38702.t1 MTR_4g094838 37.701 435 232 9 29 454 28 432 1.14e-83 264
MS.gene38702.t1 MTR_0190s0020 37.678 422 247 9 28 445 28 437 3.27e-82 261
MS.gene38702.t1 MTR_4g022670 37.385 436 247 10 21 445 16 436 1.44e-80 256
MS.gene38702.t1 MTR_4g022825 36.613 437 250 10 20 445 15 435 1.15e-79 254
MS.gene38702.t1 MTR_3g088420 36.636 434 241 10 23 445 18 428 2.13e-78 250
MS.gene38702.t1 MTR_7g026860 37.071 437 244 12 21 445 16 433 1.27e-76 246
MS.gene38702.t1 MTR_4g094828 36.343 443 246 14 8 431 6 431 4.07e-76 245
MS.gene38702.t1 MTR_4g022290 35.154 421 239 10 23 429 24 424 3.18e-74 240
MS.gene38702.t1 MTR_3g026310 37.705 427 232 13 29 437 24 434 1.06e-73 239
MS.gene38702.t1 MTR_4g094832 39.216 357 198 7 105 454 86 430 2.88e-70 229
MS.gene38702.t1 MTR_8g079710 36.235 425 238 15 21 431 21 426 8.12e-70 228
MS.gene38702.t1 MTR_4g022760 35.219 389 217 11 21 386 16 392 4.17e-63 209
MS.gene38702.t1 MTR_6g045553 32.083 480 265 14 5 445 13 470 8.02e-60 203
MS.gene38702.t1 MTR_6g016815 29.505 444 226 14 5 445 17 376 4.38e-40 148
MS.gene38702.t1 MTR_8g040780 36.123 227 136 4 234 452 14 239 3.60e-39 142
MS.gene38702.t1 MTR_8g075610 27.250 400 232 15 68 440 47 414 1.83e-30 122
MS.gene38702.t1 MTR_4g007540 25.536 466 275 20 6 440 3 427 1.75e-29 120
MS.gene38702.t1 MTR_2g064495 26.633 398 240 14 68 440 56 426 1.58e-28 117
MS.gene38702.t1 MTR_7g026770 38.418 177 88 3 155 331 132 287 2.18e-28 114
MS.gene38702.t1 MTR_2g105330 26.382 398 241 14 68 440 56 426 4.34e-28 115
MS.gene38702.t1 MTR_7g026850 42.282 149 75 4 43 190 21 159 1.11e-27 108
MS.gene38702.t1 MTR_8g096530 30.818 318 183 13 62 362 53 350 7.66e-27 112
MS.gene38702.t1 MTR_3g049150 27.578 417 248 17 56 440 46 440 1.72e-26 111
MS.gene38702.t1 MTR_3g098980 29.153 295 184 10 62 345 60 340 4.59e-25 107
MS.gene38702.t1 MTR_8g040760 33.180 217 134 6 8 223 6 212 7.87e-25 102
MS.gene38702.t1 MTR_6g053810 30.526 285 184 10 68 344 71 349 1.19e-23 103
MS.gene38702.t1 MTR_4g094825 34.286 175 100 3 280 454 232 391 1.88e-23 102
MS.gene38702.t1 MTR_4g094825 32.308 195 115 6 29 220 92 272 6.29e-21 94.7
MS.gene38702.t1 MTR_3g026950 25.059 427 249 17 62 445 48 446 3.95e-23 101
MS.gene38702.t1 MTR_5g076700 25.813 461 280 19 4 436 5 431 4.51e-23 101
MS.gene38702.t1 MTR_4g127650 25.217 460 258 19 19 436 30 445 6.18e-23 101
MS.gene38702.t1 MTR_4g097090 26.238 404 238 15 64 431 61 440 7.73e-23 100
MS.gene38702.t1 MTR_6g034495 43.478 115 61 3 82 193 48 161 5.44e-22 92.8
MS.gene38702.t1 MTR_7g114470 25.935 428 271 17 33 436 28 433 4.33e-21 95.9
MS.gene38702.t1 MTR_3g112180 27.157 394 250 13 18 399 22 390 4.46e-21 95.9
MS.gene38702.t1 MTR_1g040175 27.688 372 222 17 65 419 61 402 3.21e-20 93.2
MS.gene38702.t1 MTR_7g027175 27.586 319 204 12 56 362 56 359 1.89e-19 90.9
MS.gene38702.t1 MTR_7g114550 26.097 433 268 19 30 436 24 430 5.34e-19 89.7
MS.gene38702.t1 MTR_3g465980 25.723 346 219 13 6 334 10 334 1.38e-18 88.2
MS.gene38702.t1 MTR_1g081660 26.923 390 246 15 65 437 70 437 1.53e-18 88.2
MS.gene38702.t1 MTR_6g034485 37.607 117 66 2 205 317 2 115 2.47e-18 81.3
MS.gene38702.t1 MTR_1g040195 27.431 401 232 17 30 418 23 376 4.51e-18 86.7
MS.gene38702.t1 MTR_1g040215 27.714 350 212 15 13 347 16 339 1.37e-17 85.1
MS.gene38702.t1 MTR_4g013050 24.161 447 245 18 20 440 25 403 2.44e-17 84.3
MS.gene38702.t1 MTR_4g055170 25.267 281 183 8 68 334 69 336 7.00e-17 83.2
MS.gene38702.t1 MTR_3g465990 24.781 343 226 12 6 334 10 334 7.74e-17 82.8
MS.gene38702.t1 MTR_7g114490 25.799 438 273 19 30 441 24 435 1.31e-16 82.4
MS.gene38702.t1 MTR_7g086000 26.582 395 242 19 72 433 64 443 5.77e-16 80.5
MS.gene38702.t1 MTR_7g084940 25.000 312 203 10 64 360 65 360 5.78e-16 80.1
MS.gene38702.t1 MTR_7g114960 25.126 398 267 12 65 445 60 443 1.17e-15 79.3
MS.gene38702.t1 MTR_3g465930 27.338 278 176 9 68 331 69 334 1.24e-15 79.3
MS.gene38702.t1 MTR_7g026830 50.000 70 34 1 111 179 28 97 6.64e-15 70.9
MS.gene38702.t1 MTR_3g028210 23.158 475 292 18 6 436 8 453 3.17e-14 75.1
MS.gene38702.t1 MTR_3g465910 26.481 287 163 9 69 331 69 331 7.80e-14 73.9
MS.gene38702.t1 MTR_2g045540 36.364 88 48 1 242 329 27 106 1.44e-13 67.4
MS.gene38702.t1 MTR_2g015430 25.902 305 200 11 72 368 62 348 2.44e-13 72.0
MS.gene38702.t1 MTR_3g465950 27.273 275 179 8 69 331 69 334 2.93e-13 72.0
MS.gene38702.t1 MTR_0502s0010 30.579 242 140 12 111 337 2 230 2.93e-13 69.7
MS.gene38702.t1 MTR_3g049140 25.616 203 135 4 242 431 27 226 6.17e-13 68.9
MS.gene38702.t1 MTR_7g014250 24.029 412 241 15 29 397 26 408 7.44e-13 70.5
MS.gene38702.t1 MTR_6g015320 23.165 436 286 16 29 436 29 443 1.43e-12 69.7
MS.gene38702.t1 MTR_5g090830 24.149 323 193 15 48 342 49 347 4.21e-12 68.2
MS.gene38702.t1 MTR_8g079970 25.723 346 202 15 6 330 3 314 7.67e-12 67.4
MS.gene38702.t1 MTR_5g090810 24.138 319 198 15 48 342 49 347 2.02e-11 66.2
MS.gene38702.t1 MTR_7g014620 21.918 438 291 19 29 441 15 426 2.67e-11 65.9
MS.gene38702.t1 MTR_7g014630 30.337 178 114 6 14 188 15 185 8.71e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38702.t1 AT5G42830 57.273 440 172 3 13 445 14 444 0.0 521
MS.gene38702.t1 AT5G07850 54.649 441 199 1 6 445 8 448 0.0 514
MS.gene38702.t1 AT5G07860 53.829 444 194 5 6 445 8 444 1.63e-167 479
MS.gene38702.t1 AT5G07870 50.552 453 207 3 6 445 8 456 6.76e-163 468
MS.gene38702.t1 AT2G39980 40.164 488 204 12 17 445 17 475 2.01e-103 317
MS.gene38702.t1 AT5G67150 39.294 453 242 11 8 445 7 441 1.21e-96 298
MS.gene38702.t1 AT5G01210 39.666 479 232 11 5 445 5 464 5.52e-95 295
MS.gene38702.t1 AT3G50270 35.491 448 267 11 8 445 8 443 3.42e-80 256
MS.gene38702.t1 AT3G50280 35.449 457 270 13 3 449 1 442 1.57e-78 251
MS.gene38702.t1 AT3G50300 34.713 435 263 9 6 432 4 425 4.87e-76 245
MS.gene38702.t1 AT5G38130 34.703 438 265 11 2 432 20 443 9.91e-73 236
MS.gene38702.t1 AT5G67160 34.899 447 262 14 6 446 5 428 6.00e-69 226
MS.gene38702.t1 AT5G23940 33.698 457 274 12 6 445 3 447 3.84e-66 220
MS.gene38702.t1 AT3G50280 38.710 310 175 8 144 445 6 308 6.07e-56 188
MS.gene38702.t1 AT3G50290 39.382 259 144 6 147 396 15 269 6.53e-46 160
MS.gene38702.t1 AT5G48930 26.856 458 279 18 6 440 3 427 4.79e-32 127
MS.gene38702.t1 AT2G19070 27.765 443 258 19 29 436 25 440 9.47e-30 121
MS.gene38702.t1 AT5G41040 29.392 296 185 9 62 345 63 346 1.41e-25 108
MS.gene38702.t1 AT5G41040 29.236 301 179 11 62 345 79 362 1.98e-25 108
MS.gene38702.t1 AT3G48720 27.964 329 204 13 18 334 18 325 9.36e-22 97.8
MS.gene38702.t1 AT2G40230 27.200 375 214 14 63 409 54 397 2.02e-19 90.5
MS.gene38702.t1 AT5G63560 27.095 358 218 14 18 361 19 347 4.37e-19 89.7
MS.gene38702.t1 AT1G28680 26.136 352 214 13 72 413 66 381 1.39e-17 84.7
MS.gene38702.t1 AT1G31490 25.791 411 254 19 58 446 52 433 3.01e-17 84.3
MS.gene38702.t1 AT1G28680 24.581 358 243 12 3 350 1 341 3.67e-17 84.0
MS.gene38702.t1 AT5G57840 24.706 425 284 16 28 436 23 427 6.78e-17 83.2
MS.gene38702.t1 AT1G78990 24.183 306 197 11 48 342 52 333 6.84e-17 83.2
MS.gene38702.t1 AT2G25150 27.000 300 187 12 61 344 60 343 4.73e-14 74.3
MS.gene38702.t1 AT5G16410 24.138 290 185 10 66 342 89 356 4.25e-13 71.6
MS.gene38702.t1 AT1G65450 26.882 186 114 6 166 335 1 180 1.49e-11 65.5
MS.gene38702.t1 AT5G39090 22.414 464 305 18 4 439 3 439 2.11e-11 66.2
MS.gene38702.t1 AT3G29590 22.296 453 309 14 5 436 7 437 5.00e-11 65.1

Find 111 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTCCTAAAGAATATTT+TGG 0.084733 3.3:-84368717 MS.gene38702:CDS
CAAAATGATGTTCCTATTTA+TGG 0.092923 3.3:-84369062 MS.gene38702:CDS
TAAAATGGGTGTTTCGTATC+TGG 0.174039 3.3:+84368944 None:intergenic
GAAGATTCTCTCTCTTAAAA+TGG 0.174060 3.3:+84368929 None:intergenic
AATCTTTATCAGCATTAATT+TGG 0.192660 3.3:-84368827 MS.gene38702:CDS
TTGAATGGAAGGTTGATAAT+TGG 0.293176 3.3:+84368987 None:intergenic
TCACCAAGGTTTAATATGTA+TGG 0.306646 3.3:-84368489 MS.gene38702:CDS
ATTTGCTTTGAGTCTTTGAT+TGG 0.309010 3.3:+84369581 None:intergenic
CTATAGACTCAGCTGGAAAA+TGG 0.328484 3.3:+84368907 None:intergenic
AACATGCAGAAACGATGTTT+AGG 0.345991 3.3:+84369621 None:intergenic
GAATTCCCAAAATATTCTTT+AGG 0.346933 3.3:+84368711 None:intergenic
AATATGTATGGGAATGAATT+CGG 0.348276 3.3:-84368477 MS.gene38702:CDS
TGTGAAATGGGACCATAAAT+AGG 0.363426 3.3:+84369050 None:intergenic
AGATGGTTTCCACAAGGTTA+TGG 0.364094 3.3:-84369011 MS.gene38702:CDS
ACAATGGGTGGGACATCAAT+GGG 0.389297 3.3:+84369260 None:intergenic
TTTGCTTTGAGTCTTTGATT+GGG 0.393523 3.3:+84369582 None:intergenic
ATCACCAATACAATGATTCA+TGG 0.399519 3.3:+84369130 None:intergenic
GCCAGAGAAAATGATGTTGC+TGG 0.399927 3.3:-84368340 MS.gene38702:CDS
ATGGATAGGTTGATGTGAAA+TGG 0.405959 3.3:+84369037 None:intergenic
TTGGTGATGGAACAGCTTAT+TGG 0.406142 3.3:-84369115 MS.gene38702:CDS
GGATATGCTAACAAATTTGA+TGG 0.406437 3.3:-84368426 MS.gene38702:CDS
TTCCATTATTATCCCCTCTC+AGG 0.414564 3.3:-84369407 MS.gene38702:CDS
TGATCCTTACACTGTTATGA+TGG 0.415418 3.3:-84368517 MS.gene38702:CDS
CCAAAATATTCTTTAGGAAG+AGG 0.417262 3.3:+84368717 None:intergenic
ACATGCAGAAACGATGTTTA+GGG 0.418061 3.3:+84369622 None:intergenic
CAGATGAAGAGTTCAACTTC+TGG 0.424021 3.3:-84368314 MS.gene38702:CDS
AATATGTTATTTAACACATT+GGG 0.426446 3.3:-84369561 MS.gene38702:CDS
GGTTCTCAATGAAATGTTGT+TGG 0.429365 3.3:+84369468 None:intergenic
AAAATGGGTGTTTCGTATCT+GGG 0.430898 3.3:+84368945 None:intergenic
CTTGTGGAAACCATCTATTA+TGG 0.431161 3.3:+84369018 None:intergenic
GGAGAGAACAACTTGCAAAA+TGG 0.431719 3.3:-84368769 MS.gene38702:CDS
ATCAACCTATCCATAATAGA+TGG 0.438483 3.3:-84369028 MS.gene38702:CDS
AATGGAAAAGTGTGAGAGAA+AGG 0.440646 3.3:+84369423 None:intergenic
CTTCCTCCTCCTTCTTGACC+TGG 0.449239 3.3:+84368387 None:intergenic
AACGACGGTAGGGGAATTGC+TGG 0.449956 3.3:-84368667 MS.gene38702:CDS
TGTTGGTTTAGTGATGTTGT+TGG 0.451176 3.3:+84369485 None:intergenic
TATTCAAGTCACGGAATTAG+TGG 0.453345 3.3:-84369174 MS.gene38702:CDS
ATCTACACACTATATCCAAA+AGG 0.455900 3.3:-84369525 MS.gene38702:CDS
GACAATGGGTGGGACATCAA+TGG 0.465845 3.3:+84369259 None:intergenic
AAGATTCTCTCTCTTAAAAT+GGG 0.467841 3.3:+84368930 None:intergenic
GAGGTGGTTCCATTCTCGTT+CGG 0.474421 3.3:+84368736 None:intergenic
TCAAAGAACGATTGGACAAT+GGG 0.480071 3.3:+84369245 None:intergenic
TGTTCCATGAATCATTGTAT+TGG 0.480232 3.3:-84369134 MS.gene38702:CDS
TATGGGAATGAATTCGGAAT+GGG 0.482191 3.3:-84368471 MS.gene38702:CDS
AACTCATCGTGATGTTTGAA+TGG 0.482751 3.3:+84368972 None:intergenic
CTACCCATCATAACAGTGTA+AGG 0.483421 3.3:+84368513 None:intergenic
TTGCTTTGAGTCTTTGATTG+GGG 0.486605 3.3:+84369583 None:intergenic
AGTTTCGCTATAGACTCAGC+TGG 0.493398 3.3:+84368900 None:intergenic
CACAAAGCAGTCAGCCATGA+TGG 0.494201 3.3:-84369218 MS.gene38702:CDS
GAATTGCTGGAGAATGATCT+AGG 0.495485 3.3:-84368654 MS.gene38702:CDS
AAATATGTTATTTAACACAT+TGG 0.495981 3.3:-84369562 MS.gene38702:CDS
CACCAAGGTTTAATATGTAT+GGG 0.497351 3.3:-84368488 MS.gene38702:CDS
TACAAACAACCGAACGAGAA+TGG 0.497668 3.3:-84368745 MS.gene38702:CDS
GACCTGAGAGGGGATAATAA+TGG 0.500614 3.3:+84369405 None:intergenic
TTCCCATACATATTAAACCT+TGG 0.501336 3.3:+84368486 None:intergenic
GTGCACGTCAACTACAACAC+CGG 0.505056 3.3:-84368791 MS.gene38702:CDS
TGGATAGGTTGATGTGAAAT+GGG 0.510183 3.3:+84369038 None:intergenic
TGCGGTGAGTGCTGAAACGA+CGG 0.510373 3.3:-84368682 MS.gene38702:CDS
CAATGGGTGGGACATCAATG+GGG 0.513002 3.3:+84369261 None:intergenic
TTTGTTATCTATTCAAGTCA+CGG 0.519202 3.3:-84369183 MS.gene38702:CDS
TGCTTTGAGTCTTTGATTGG+GGG 0.522475 3.3:+84369584 None:intergenic
TGCTGGAGAATGATCTAGGA+TGG 0.523136 3.3:-84368650 MS.gene38702:CDS
AAATCTGTTTGATACACAAA+AGG 0.526852 3.3:+84368546 None:intergenic
ATGAATCATTGTATTGGTGA+TGG 0.530598 3.3:-84369128 MS.gene38702:CDS
TGTGATGGTCAAAGAACGAT+TGG 0.541390 3.3:+84369237 None:intergenic
CATCGTGATGTTTGAATGGA+AGG 0.541756 3.3:+84368976 None:intergenic
GGAAAAGTAACATCATATCC+AGG 0.542909 3.3:-84368405 MS.gene38702:CDS
GATCCTTACACTGTTATGAT+GGG 0.549602 3.3:-84368516 MS.gene38702:CDS
AGTAACAAGACGACCTGAGA+GGG 0.549751 3.3:+84369394 None:intergenic
GCATGAATAAATTTACCTCC+AGG 0.549837 3.3:+84369317 None:intergenic
GGAAACCATCTATTATGGAT+AGG 0.550853 3.3:+84369023 None:intergenic
ACGAAAACAGTGTAAGAATG+AGG 0.552044 3.3:+84369356 None:intergenic
TGAGTGCTGAAACGACGGTA+GGG 0.561903 3.3:-84368677 MS.gene38702:CDS
AATGGGTGGGACATCAATGG+GGG 0.568371 3.3:+84369262 None:intergenic
GTATGGGAATGAATTCGGAA+TGG 0.568846 3.3:-84368472 MS.gene38702:CDS
ATGATCTAGGATGGGCAGCA+TGG 0.569534 3.3:-84368641 MS.gene38702:CDS
GTCAAAGAACGATTGGACAA+TGG 0.570569 3.3:+84369244 None:intergenic
AGTAAATCATGATGATATAG+TGG 0.571996 3.3:-84368601 MS.gene38702:CDS
TCTACACACTATATCCAAAA+GGG 0.572382 3.3:-84369524 MS.gene38702:CDS
AAATATTCTTTAGGAAGAGG+TGG 0.572893 3.3:+84368720 None:intergenic
CATGGCTGACTGCTTTGTGA+TGG 0.574372 3.3:+84369222 None:intergenic
TGTGTAGGTCGGTTGAAGAG+TGG 0.574581 3.3:-84368578 MS.gene38702:CDS
AAAGCTTTAGCAGTTAGAAG+TGG 0.578010 3.3:-84368447 MS.gene38702:CDS
GAGTGCTGAAACGACGGTAG+GGG 0.585903 3.3:-84368676 MS.gene38702:CDS
ACATCATATCCAGGTCAAGA+AGG 0.586316 3.3:-84368396 MS.gene38702:CDS
CAGAAACGATGTTTAGGGAA+GGG 0.589656 3.3:+84369627 None:intergenic
TGCACGTCAACTACAACACC+GGG 0.595711 3.3:-84368790 MS.gene38702:CDS
ACATTTCATTGAGAACCTTG+TGG 0.604788 3.3:-84369462 MS.gene38702:CDS
GCAGAAACGATGTTTAGGGA+AGG 0.605789 3.3:+84369626 None:intergenic
GTGAGTGCTGAAACGACGGT+AGG 0.605829 3.3:-84368678 MS.gene38702:CDS
TGATATAGTGGTGTGTAGGT+CGG 0.607347 3.3:-84368589 MS.gene38702:CDS
CAAGTCACGGAATTAGTGGA+TGG 0.611468 3.3:-84369170 MS.gene38702:CDS
ATACTCAAAGACTAGAACAT+GGG 0.612835 3.3:+84368283 None:intergenic
AAGAACGATTGGACAATGGG+TGG 0.614907 3.3:+84369248 None:intergenic
CATACTCAAAGACTAGAACA+TGG 0.617067 3.3:+84368282 None:intergenic
AGAACGATTGGACAATGGGT+GGG 0.617288 3.3:+84369249 None:intergenic
CGAAAACAGTGTAAGAATGA+GGG 0.618698 3.3:+84369357 None:intergenic
GATATAGTGTGTAGATAACA+TGG 0.622938 3.3:+84369532 None:intergenic
TATCCAGGTCAAGAAGGAGG+AGG 0.624408 3.3:-84368390 MS.gene38702:CDS
GCTGGAGAATGATCTAGGAT+GGG 0.628974 3.3:-84368649 MS.gene38702:CDS
AGTGTTTGAGTTTCTCCACA+AGG 0.632277 3.3:+84369447 None:intergenic
CATAATAGATGGTTTCCACA+AGG 0.639213 3.3:-84369017 MS.gene38702:CDS
ATAATTGGACCATAACCTTG+TGG 0.645522 3.3:+84369002 None:intergenic
TATAGCGAAACTGAAAGCAA+AGG 0.650352 3.3:-84368889 MS.gene38702:CDS
AAGACATGGTGTGACCATCA+TGG 0.662753 3.3:+84369204 None:intergenic
TCATATCCAGGTCAAGAAGG+AGG 0.665076 3.3:-84368393 MS.gene38702:CDS
ATGATGATATAGTGGTGTGT+AGG 0.672280 3.3:-84368593 MS.gene38702:CDS
TAGTAACAAGACGACCTGAG+AGG 0.695039 3.3:+84369393 None:intergenic
TTGAATAGATAACAAAGACA+TGG 0.705301 3.3:+84369190 None:intergenic
TTATGATGGGTAGTTCACCA+AGG 0.706961 3.3:-84368503 MS.gene38702:CDS
GTAACAAGACGACCTGAGAG+GGG 0.714877 3.3:+84369395 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATGTTATTTAACACAT+TGG - chr3.3:84368360-84368379 MS.gene38702:CDS 15.0%
!!! AATATGTTATTTAACACATT+GGG - chr3.3:84368361-84368380 MS.gene38702:CDS 15.0%
!! AATCTTTATCAGCATTAATT+TGG - chr3.3:84369095-84369114 MS.gene38702:CDS 20.0%
! AAATCTGTTTGATACACAAA+AGG + chr3.3:84369379-84369398 None:intergenic 25.0%
! AAGATTCTCTCTCTTAAAAT+GGG + chr3.3:84368995-84369014 None:intergenic 25.0%
! AATATGTATGGGAATGAATT+CGG - chr3.3:84369445-84369464 MS.gene38702:CDS 25.0%
! AGTAAATCATGATGATATAG+TGG - chr3.3:84369321-84369340 MS.gene38702:CDS 25.0%
! CAAAATGATGTTCCTATTTA+TGG - chr3.3:84368860-84368879 MS.gene38702:CDS 25.0%
! GAATTCCCAAAATATTCTTT+AGG + chr3.3:84369214-84369233 None:intergenic 25.0%
! TTGAATAGATAACAAAGACA+TGG + chr3.3:84368735-84368754 None:intergenic 25.0%
!! CTCTTCCTAAAGAATATTTT+GGG - chr3.3:84369206-84369225 MS.gene38702:CDS 25.0%
!! TTTGTTATCTATTCAAGTCA+CGG - chr3.3:84368739-84368758 MS.gene38702:CDS 25.0%
ATCAACCTATCCATAATAGA+TGG - chr3.3:84368894-84368913 MS.gene38702:CDS 30.0%
ATCACCAATACAATGATTCA+TGG + chr3.3:84368795-84368814 None:intergenic 30.0%
ATCTACACACTATATCCAAA+AGG - chr3.3:84368397-84368416 MS.gene38702:CDS 30.0%
CACCAAGGTTTAATATGTAT+GGG - chr3.3:84369434-84369453 MS.gene38702:CDS 30.0%
GAAGATTCTCTCTCTTAAAA+TGG + chr3.3:84368996-84369015 None:intergenic 30.0%
GATATAGTGTGTAGATAACA+TGG + chr3.3:84368393-84368412 None:intergenic 30.0%
GGATATGCTAACAAATTTGA+TGG - chr3.3:84369496-84369515 MS.gene38702:CDS 30.0%
TCACCAAGGTTTAATATGTA+TGG - chr3.3:84369433-84369452 MS.gene38702:CDS 30.0%
TCTACACACTATATCCAAAA+GGG - chr3.3:84368398-84368417 MS.gene38702:CDS 30.0%
TGTTCCATGAATCATTGTAT+TGG - chr3.3:84368788-84368807 MS.gene38702:CDS 30.0%
TTCCCATACATATTAAACCT+TGG + chr3.3:84369439-84369458 None:intergenic 30.0%
! AAATATTCTTTAGGAAGAGG+TGG + chr3.3:84369205-84369224 None:intergenic 30.0%
! ATGAATCATTGTATTGGTGA+TGG - chr3.3:84368794-84368813 MS.gene38702:CDS 30.0%
! ATTTGCTTTGAGTCTTTGAT+TGG + chr3.3:84368344-84368363 None:intergenic 30.0%
! CCAAAATATTCTTTAGGAAG+AGG + chr3.3:84369208-84369227 None:intergenic 30.0%
! CCTCTTCCTAAAGAATATTT+TGG - chr3.3:84369205-84369224 MS.gene38702:CDS 30.0%
! TCGTCTTGTTACTAAAAAGT+CGG - chr3.3:84368538-84368557 MS.gene38702:CDS 30.0%
! TTTGCTTTGAGTCTTTGATT+GGG + chr3.3:84368343-84368362 None:intergenic 30.0%
!! TTGAATGGAAGGTTGATAAT+TGG + chr3.3:84368938-84368957 None:intergenic 30.0%
AAAATGGGTGTTTCGTATCT+GGG + chr3.3:84368980-84368999 None:intergenic 35.0%
AACATGCAGAAACGATGTTT+AGG + chr3.3:84368304-84368323 None:intergenic 35.0%
AACTCATCGTGATGTTTGAA+TGG + chr3.3:84368953-84368972 None:intergenic 35.0%
ACATGCAGAAACGATGTTTA+GGG + chr3.3:84368303-84368322 None:intergenic 35.0%
ACATTTCATTGAGAACCTTG+TGG - chr3.3:84368460-84368479 MS.gene38702:CDS 35.0%
ACGAAAACAGTGTAAGAATG+AGG + chr3.3:84368569-84368588 None:intergenic 35.0%
ATAATTGGACCATAACCTTG+TGG + chr3.3:84368923-84368942 None:intergenic 35.0%
ATGATGATATAGTGGTGTGT+AGG - chr3.3:84369329-84369348 MS.gene38702:CDS 35.0%
CATAATAGATGGTTTCCACA+AGG - chr3.3:84368905-84368924 MS.gene38702:CDS 35.0%
CGAAAACAGTGTAAGAATGA+GGG + chr3.3:84368568-84368587 None:intergenic 35.0%
CTTGTGGAAACCATCTATTA+TGG + chr3.3:84368907-84368926 None:intergenic 35.0%
GATCCTTACACTGTTATGAT+GGG - chr3.3:84369406-84369425 MS.gene38702:CDS 35.0%
GCATGAATAAATTTACCTCC+AGG + chr3.3:84368608-84368627 None:intergenic 35.0%
GGAAAAGTAACATCATATCC+AGG - chr3.3:84369517-84369536 MS.gene38702:CDS 35.0%
GGAAACCATCTATTATGGAT+AGG + chr3.3:84368902-84368921 None:intergenic 35.0%
GGTTCTCAATGAAATGTTGT+TGG + chr3.3:84368457-84368476 None:intergenic 35.0%
TAAAATGGGTGTTTCGTATC+TGG + chr3.3:84368981-84369000 None:intergenic 35.0%
TATAGCGAAACTGAAAGCAA+AGG - chr3.3:84369033-84369052 MS.gene38702:CDS 35.0%
TATGGGAATGAATTCGGAAT+GGG - chr3.3:84369451-84369470 MS.gene38702:CDS 35.0%
TATTCAAGTCACGGAATTAG+TGG - chr3.3:84368748-84368767 MS.gene38702:CDS 35.0%
TCAAAGAACGATTGGACAAT+GGG + chr3.3:84368680-84368699 None:intergenic 35.0%
TGATCCTTACACTGTTATGA+TGG - chr3.3:84369405-84369424 MS.gene38702:CDS 35.0%
TGTGAAATGGGACCATAAAT+AGG + chr3.3:84368875-84368894 None:intergenic 35.0%
! AAAGCTTTAGCAGTTAGAAG+TGG - chr3.3:84369475-84369494 MS.gene38702:CDS 35.0%
! AATGGAAAAGTGTGAGAGAA+AGG + chr3.3:84368502-84368521 None:intergenic 35.0%
! TTGCTTTGAGTCTTTGATTG+GGG + chr3.3:84368342-84368361 None:intergenic 35.0%
!! ATGGATAGGTTGATGTGAAA+TGG + chr3.3:84368888-84368907 None:intergenic 35.0%
!! TGGATAGGTTGATGTGAAAT+GGG + chr3.3:84368887-84368906 None:intergenic 35.0%
!! TGTTGGTTTAGTGATGTTGT+TGG + chr3.3:84368440-84368459 None:intergenic 35.0%
!! TTAGTGGATGGTGTTTTCAT+TGG - chr3.3:84368764-84368783 MS.gene38702:CDS 35.0%
!! TTTTGAAGAGAAGACCCTTT+TGG + chr3.3:84368415-84368434 None:intergenic 35.0%
!! TTTTGGGAATTCACTTCATG+CGG - chr3.3:84369222-84369241 MS.gene38702:CDS 35.0%
ACATCATATCCAGGTCAAGA+AGG - chr3.3:84369526-84369545 MS.gene38702:CDS 40.0%
AGATGGTTTCCACAAGGTTA+TGG - chr3.3:84368911-84368930 MS.gene38702:CDS 40.0%
CAGAAACGATGTTTAGGGAA+GGG + chr3.3:84368298-84368317 None:intergenic 40.0%
CAGATGAAGAGTTCAACTTC+TGG - chr3.3:84369608-84369627 MS.gene38702:CDS 40.0%
CATCGTGATGTTTGAATGGA+AGG + chr3.3:84368949-84368968 None:intergenic 40.0%
CTACCCATCATAACAGTGTA+AGG + chr3.3:84369412-84369431 None:intergenic 40.0%
CTATAGACTCAGCTGGAAAA+TGG + chr3.3:84369018-84369037 None:intergenic 40.0%
GAATTGCTGGAGAATGATCT+AGG - chr3.3:84369268-84369287 MS.gene38702:CDS 40.0%
GGAGAGAACAACTTGCAAAA+TGG - chr3.3:84369153-84369172 MS.gene38702:CDS 40.0%
GTATGGGAATGAATTCGGAA+TGG - chr3.3:84369450-84369469 MS.gene38702:CDS 40.0%
GTCAAAGAACGATTGGACAA+TGG + chr3.3:84368681-84368700 None:intergenic 40.0%
TACAAACAACCGAACGAGAA+TGG - chr3.3:84369177-84369196 MS.gene38702:CDS 40.0%
TGATATAGTGGTGTGTAGGT+CGG - chr3.3:84369333-84369352 MS.gene38702:CDS 40.0%
TGTGATGGTCAAAGAACGAT+TGG + chr3.3:84368688-84368707 None:intergenic 40.0%
TTCCATTATTATCCCCTCTC+AGG - chr3.3:84368515-84368534 MS.gene38702:CDS 40.0%
! AGTGTTTGAGTTTCTCCACA+AGG + chr3.3:84368478-84368497 None:intergenic 40.0%
! TCCAGCAACATCATTTTCTC+TGG + chr3.3:84369586-84369605 None:intergenic 40.0%
! TGCTTTGAGTCTTTGATTGG+GGG + chr3.3:84368341-84368360 None:intergenic 40.0%
! TTTTGCAAGTTGTTCTCTCC+CGG + chr3.3:84369153-84369172 None:intergenic 40.0%
!! TTATGATGGGTAGTTCACCA+AGG - chr3.3:84369419-84369438 MS.gene38702:CDS 40.0%
!! TTGGTGATGGAACAGCTTAT+TGG - chr3.3:84368807-84368826 MS.gene38702:CDS 40.0%
AAGAACGATTGGACAATGGG+TGG + chr3.3:84368677-84368696 None:intergenic 45.0%
AAGACATGGTGTGACCATCA+TGG + chr3.3:84368721-84368740 None:intergenic 45.0%
ACAATGGGTGGGACATCAAT+GGG + chr3.3:84368665-84368684 None:intergenic 45.0%
AGAACGATTGGACAATGGGT+GGG + chr3.3:84368676-84368695 None:intergenic 45.0%
AGTAACAAGACGACCTGAGA+GGG + chr3.3:84368531-84368550 None:intergenic 45.0%
AGTTTCGCTATAGACTCAGC+TGG + chr3.3:84369025-84369044 None:intergenic 45.0%
CAAGTCACGGAATTAGTGGA+TGG - chr3.3:84368752-84368771 MS.gene38702:CDS 45.0%
GACCTGAGAGGGGATAATAA+TGG + chr3.3:84368520-84368539 None:intergenic 45.0%
GAGTCTTTGATTGGGGGATA+TGG + chr3.3:84368335-84368354 None:intergenic 45.0%
GATTGCAAAAACAGTCCTGG+AGG - chr3.3:84368590-84368609 MS.gene38702:CDS 45.0%
GCAGAAACGATGTTTAGGGA+AGG + chr3.3:84368299-84368318 None:intergenic 45.0%
GCCAGAGAAAATGATGTTGC+TGG - chr3.3:84369582-84369601 MS.gene38702:CDS 45.0%
GTCGATTGCAAAAACAGTCC+TGG - chr3.3:84368587-84368606 MS.gene38702:CDS 45.0%
TAGTAACAAGACGACCTGAG+AGG + chr3.3:84368532-84368551 None:intergenic 45.0%
TCATATCCAGGTCAAGAAGG+AGG - chr3.3:84369529-84369548 MS.gene38702:CDS 45.0%
TGCTGGAGAATGATCTAGGA+TGG - chr3.3:84369272-84369291 MS.gene38702:CDS 45.0%
! GCTGGAGAATGATCTAGGAT+GGG - chr3.3:84369273-84369292 MS.gene38702:CDS 45.0%
AATGGGTGGGACATCAATGG+GGG + chr3.3:84368663-84368682 None:intergenic 50.0%
CAATGGGTGGGACATCAATG+GGG + chr3.3:84368664-84368683 None:intergenic 50.0%
CACAAAGCAGTCAGCCATGA+TGG - chr3.3:84368704-84368723 MS.gene38702:CDS 50.0%
CATGGCTGACTGCTTTGTGA+TGG + chr3.3:84368703-84368722 None:intergenic 50.0%
GACAATGGGTGGGACATCAA+TGG + chr3.3:84368666-84368685 None:intergenic 50.0%
GAGGTGGTTCCATTCTCGTT+CGG + chr3.3:84369189-84369208 None:intergenic 50.0%
GTAACAAGACGACCTGAGAG+GGG + chr3.3:84368530-84368549 None:intergenic 50.0%
GTGCACGTCAACTACAACAC+CGG - chr3.3:84369131-84369150 MS.gene38702:CDS 50.0%
TATCCAGGTCAAGAAGGAGG+AGG - chr3.3:84369532-84369551 MS.gene38702:CDS 50.0%
TGCACGTCAACTACAACACC+GGG - chr3.3:84369132-84369151 MS.gene38702:CDS 50.0%
TGTGTAGGTCGGTTGAAGAG+TGG - chr3.3:84369344-84369363 MS.gene38702:CDS 50.0%
! ATGATCTAGGATGGGCAGCA+TGG - chr3.3:84369281-84369300 MS.gene38702:CDS 50.0%
!! TGAGTGCTGAAACGACGGTA+GGG - chr3.3:84369245-84369264 MS.gene38702:CDS 50.0%
AACGACGGTAGGGGAATTGC+TGG - chr3.3:84369255-84369274 MS.gene38702:CDS 55.0%
CTTCCTCCTCCTTCTTGACC+TGG + chr3.3:84369538-84369557 None:intergenic 55.0%
!! GAGTGCTGAAACGACGGTAG+GGG - chr3.3:84369246-84369265 MS.gene38702:CDS 55.0%
!! GTGAGTGCTGAAACGACGGT+AGG - chr3.3:84369244-84369263 MS.gene38702:CDS 55.0%
!! TGCGGTGAGTGCTGAAACGA+CGG - chr3.3:84369240-84369259 MS.gene38702:CDS 55.0%
GTGGGACATCAATGGGGGTG+AGG + chr3.3:84368658-84368677 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 84368287 84369657 84368287 ID=MS.gene38702
chr3.3 mRNA 84368287 84369657 84368287 ID=MS.gene38702.t1;Parent=MS.gene38702
chr3.3 exon 84368287 84369657 84368287 ID=MS.gene38702.t1.exon1;Parent=MS.gene38702.t1
chr3.3 CDS 84368287 84369657 84368287 ID=cds.MS.gene38702.t1;Parent=MS.gene38702.t1
Gene Sequence

>MS.gene38702

ATGAGGATCCCTTCCCTAAACATCGTTTCTGCATGTTTTATTAAACCATATCCCCCAATCAAAGACTCAAAGCAAATATGTTATTTAACACATTGGGATATTGCCATGTTATCTACACACTATATCCAAAAGGGTCTTCTCTTCAAAAAACCAACAACATCACTAAACCAACAACATTTCATTGAGAACCTTGTGGAGAAACTCAAACACTGCCTTTCTCTCACACTTTTCCATTATTATCCCCTCTCAGGTCGTCTTGTTACTAAAAAGTCGGAAGACCCTCATTCTTACACTGTTTTCGTCGATTGCAAAAACAGTCCTGGAGGTAAATTTATTCATGCAACTTTAGATATTACTATCAATGATATCCTCACCCCCATTGATGTCCCACCCATTGTCCAATCGTTCTTTGACCATCACAAAGCAGTCAGCCATGATGGTCACACCATGTCTTTGTTATCTATTCAAGTCACGGAATTAGTGGATGGTGTTTTCATTGGTTGTTCCATGAATCATTGTATTGGTGATGGAACAGCTTATTGGAATTTTTTCAACACATTTTCTGAGATATTTCAAAATGATGTTCCTATTTATGGTCCCATTTCACATCAACCTATCCATAATAGATGGTTTCCACAAGGTTATGGTCCAATTATCAACCTTCCATTCAAACATCACGATGAGTTTGTTCCCAGATACGAAACACCCATTTTAAGAGAGAGAATCTTCCATTTTCCAGCTGAGTCTATAGCGAAACTGAAAGCAAAGGCAAATGAAGAGTCTAATACAAGCAAAATTTCTTCGTTTCAATCTTTATCAGCATTAATTTGGAGATCTATAACTCGTGCACGTCAACTACAACACCGGGAGAGAACAACTTGCAAAATGGCTACAAACAACCGAACGAGAATGGAACCACCTCTTCCTAAAGAATATTTTGGGAATTCACTTCATGCGGTGAGTGCTGAAACGACGGTAGGGGAATTGCTGGAGAATGATCTAGGATGGGCAGCATGGAAAATTCATCTAGCTGTAGTAAATCATGATGATATAGTGGTGTGTAGGTCGGTTGAAGAGTGGTTTCGTTCTCCTTTTGTGTATCAAACAGATTTGTTTTTTGATCCTTACACTGTTATGATGGGTAGTTCACCAAGGTTTAATATGTATGGGAATGAATTCGGAATGGGAAAAGCTTTAGCAGTTAGAAGTGGATATGCTAACAAATTTGATGGAAAAGTAACATCATATCCAGGTCAAGAAGGAGGAGGAAGCATTGATCTTGAAGTGTGTCTTTCGCCAGAGAAAATGATGTTGCTGGAAACAGATGAAGAGTTCAACTTCTGGTGTTTGCTCCCATGTTCTAGTCTTTGA

Protein sequence

>MS.gene38702.t1

MRIPSLNIVSACFIKPYPPIKDSKQICYLTHWDIAMLSTHYIQKGLLFKKPTTSLNQQHFIENLVEKLKHCLSLTLFHYYPLSGRLVTKKSEDPHSYTVFVDCKNSPGGKFIHATLDITINDILTPIDVPPIVQSFFDHHKAVSHDGHTMSLLSIQVTELVDGVFIGCSMNHCIGDGTAYWNFFNTFSEIFQNDVPIYGPISHQPIHNRWFPQGYGPIINLPFKHHDEFVPRYETPILRERIFHFPAESIAKLKAKANEESNTSKISSFQSLSALIWRSITRARQLQHRERTTCKMATNNRTRMEPPLPKEYFGNSLHAVSAETTVGELLENDLGWAAWKIHLAVVNHDDIVVCRSVEEWFRSPFVYQTDLFFDPYTVMMGSSPRFNMYGNEFGMGKALAVRSGYANKFDGKVTSYPGQEGGGSIDLEVCLSPEKMMLLETDEEFNFWCLLPCSSL