AlfalfaGEDB | MS.gene028001

M. sativa cultivar XinJiangDaYe / MS.gene028001

KEGG: K22503
GO: GO:0000166 GO:0003674 GO:0003676 GO:0003824 GO:0004812 GO:0004815 GO:0005488 GO:0005524 GO:0005575 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006418 GO:0006422 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016874 GO:0016875 GO:0017076 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034660 GO:0035639 GO:0036094 GO:0043038 GO:0043039 GO:0043167 GO:0043168 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0110165 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564
PFAM: PF00152.23 PF01336.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028001.t1	AES95696.1	84.3	543	66	3	1	539	62	589	2.20E-255	891.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028001.t1	Q9M084	64.5	498	167	2	52	539	61	558	2.2e-184	646.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028001.t1	G7KAW8	84.3	543	66	3	1	539	62	589	1.6e-255	891.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000626	MS.gene028001	PPI
MS.gene009724	MS.gene028001	PPI
MS.gene015655	MS.gene028001	PPI
MS.gene028001	MS.gene026529	PPI
MS.gene028001	MS.gene55626	PPI
MS.gene028001	MS.gene052675	PPI
MS.gene028001	MS.gene98264	PPI
MS.gene028001	MS.gene039458	PPI
MS.gene028001	MS.gene052677	PPI
MS.gene028001	MS.gene73119	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028001.t1	MTR_5g028360	88.214	543	45	3	1	539	62	589	0.0	969
MS.gene028001.t1	MTR_1g014140	73.937	541	139	1	1	539	1	541	0.0	816
MS.gene028001.t1	MTR_4g100920	25.145	517	295	19	65	534	70	541	2.43e-33	134
MS.gene028001.t1	MTR_8g102050	30.605	281	175	8	269	536	275	548	1.31e-26	114
MS.gene028001.t1	MTR_7g101050	31.970	269	163	10	282	536	311	573	9.97e-26	111
MS.gene028001.t1	MTR_2g036600	22.292	480	322	15	91	531	121	588	5.92e-15	78.2
MS.gene028001.t1	MTR_8g104740	28.214	280	172	12	61	331	57	316	1.04e-11	68.2
MS.gene028001.t1	MTR_4g052070	26.172	256	166	8	83	331	65	304	2.04e-11	67.0
MS.gene028001.t1	MTR_4g127790	22.905	358	238	11	207	530	32	385	2.29e-11	66.2
MS.gene028001.t1	MTR_4g120810	27.358	318	194	14	22	331	26	314	2.36e-11	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028001.t1	AT4G31180	63.250	517	180	2	33	539	42	558	0.0	678
MS.gene028001.t1	AT4G31180	63.250	517	180	2	33	539	42	558	0.0	678
MS.gene028001.t1	AT4G26870	62.016	516	190	4	25	539	22	532	0.0	649
MS.gene028001.t1	AT4G17300	25.352	497	283	16	86	534	106	562	3.45e-31	127
MS.gene028001.t1	AT4G17300	25.352	497	283	16	86	534	126	582	4.16e-31	127
MS.gene028001.t1	AT5G56680	29.603	277	175	8	273	536	300	569	1.36e-27	117
MS.gene028001.t1	AT1G70980	29.710	276	172	8	276	536	300	568	2.40e-25	110
MS.gene028001.t1	AT3G07420	23.792	269	191	8	273	532	368	631	2.39e-11	67.0
MS.gene028001.t1	AT4G33760	29.600	250	152	9	88	331	87	318	7.59e-11	65.5

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Find 120 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGCCATCTTCTTACTCAC+TGG	0.532690	5.2:-19268026	None:intergenic
AAGTGAAGCTGAATATGACA+GGG	0.700528	5.2:+19268421	MS.gene028001:CDS
AAGTGCTTTGACCTGGGTCC+GGG	0.362290	5.2:-19267946	None:intergenic
AATAATTCAGTTAGAATTCG+AGG	0.508512	5.2:+19267984	MS.gene028001:CDS
AATCGTCAAGTGCTTTGACC+TGG	0.518195	5.2:-19267953	None:intergenic
ACAACTTGTTCGTGTGAATC+AGG	0.394922	5.2:+19268668	MS.gene028001:CDS
ACACAGATGCCTGTGAGTAA+AGG	0.545161	5.2:-19269188	None:intergenic
ACAGATATACCTCGAAATAG+TGG	0.539941	5.2:-19269249	None:intergenic
ACCGATACCCTTTGGCCATA+AGG	0.383226	5.2:+19270416	MS.gene028001:CDS
ACCTCAACTTCACAAGCAAA+TGG	0.513847	5.2:+19269105	MS.gene028001:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACAAATCTTAATCAGTG+TGG	-	chr5.2:19268525-19268544	None:intergenic	30.0%
ACAGGAAACTTGAGATTTAA+TGG	-	chr5.2:19270623-19270642	None:intergenic	30.0%
AGACAAATCATCAGTAAATC+AGG	-	chr5.2:19269319-19269338	None:intergenic	30.0%
CAAGATACTTCTTACATTTC+TGG	-	chr5.2:19269407-19269426	None:intergenic	30.0%
CGTGATAAAAGAAAGACTAA+AGG	-	chr5.2:19269788-19269807	None:intergenic	30.0%
CTAAATTGTATTGTGTGAGT+AGG	+	chr5.2:19268357-19268376	MS.gene028001:CDS	30.0%
CTAGATCCATTAATCAACTT+TGG	-	chr5.2:19269022-19269041	None:intergenic	30.0%
CTTATTACATTGATGCTTTC+AGG	+	chr5.2:19270780-19270799	MS.gene028001:CDS	30.0%
GTGAATTGAAATGAAGTCTT+CGG	-	chr5.2:19268996-19269015	None:intergenic	30.0%
TCATAGTTGATCTTATGTAG+TGG	+	chr5.2:19269484-19269503	MS.gene028001:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	19267720	19271075	19267720	ID=MS.gene028001
chr5.2	mRNA	19267720	19271075	19267720	ID=MS.gene028001.t1;Parent=MS.gene028001
chr5.2	exon	19267720	19268220	19267720	ID=MS.gene028001.t1.exon1;Parent=MS.gene028001.t1
chr5.2	CDS	19267720	19268220	19267720	ID=cds.MS.gene028001.t1;Parent=MS.gene028001.t1
chr5.2	exon	19268341	19268451	19268341	ID=MS.gene028001.t1.exon2;Parent=MS.gene028001.t1
chr5.2	CDS	19268341	19268451	19268341	ID=cds.MS.gene028001.t1;Parent=MS.gene028001.t1
chr5.2	exon	19268660	19268773	19268660	ID=MS.gene028001.t1.exon3;Parent=MS.gene028001.t1
chr5.2	CDS	19268660	19268773	19268660	ID=cds.MS.gene028001.t1;Parent=MS.gene028001.t1
chr5.2	exon	19268971	19269261	19268971	ID=MS.gene028001.t1.exon4;Parent=MS.gene028001.t1
chr5.2	CDS	19268971	19269261	19268971	ID=cds.MS.gene028001.t1;Parent=MS.gene028001.t1
chr5.2	exon	19269354	19269464	19269354	ID=MS.gene028001.t1.exon5;Parent=MS.gene028001.t1
chr5.2	CDS	19269354	19269464	19269354	ID=cds.MS.gene028001.t1;Parent=MS.gene028001.t1
chr5.2	exon	19269655	19269708	19269655	ID=MS.gene028001.t1.exon6;Parent=MS.gene028001.t1
chr5.2	CDS	19269655	19269708	19269655	ID=cds.MS.gene028001.t1;Parent=MS.gene028001.t1
chr5.2	exon	19270217	19270296	19270217	ID=MS.gene028001.t1.exon7;Parent=MS.gene028001.t1
chr5.2	CDS	19270217	19270296	19270217	ID=cds.MS.gene028001.t1;Parent=MS.gene028001.t1
chr5.2	exon	19270390	19270505	19270390	ID=MS.gene028001.t1.exon8;Parent=MS.gene028001.t1
chr5.2	CDS	19270390	19270505	19270390	ID=cds.MS.gene028001.t1;Parent=MS.gene028001.t1
chr5.2	exon	19270687	19270801	19270687	ID=MS.gene028001.t1.exon9;Parent=MS.gene028001.t1
chr5.2	CDS	19270687	19270801	19270687	ID=cds.MS.gene028001.t1;Parent=MS.gene028001.t1
chr5.2	exon	19270949	19271075	19270949	ID=MS.gene028001.t1.exon10;Parent=MS.gene028001.t1
chr5.2	CDS	19270949	19271075	19270949	ID=cds.MS.gene028001.t1;Parent=MS.gene028001.t1

Gene Sequence

>MS.gene028001

ATGTCATCTCCCAAGTGCAAAGAGCCTGCACCAGCACCATCATCGTCGGAATCATCAGAATCTATAAGTAAAAAAGCCGCCAAGCTGGTAAAGCTCCGACATCGGCAACAAATGGCCGCCGCTGCTACTACCTCTGTCTCTAATCTCTCAGCAGACCCCTTAGCCACCAATTATGGCAACATCCCATTAGAGGAGCTCCAATCCAAGACACCGGTCCATCCCGTCCCCCGGACCCAGGTCAAAGCACTTGACGATTCACTGGTGAATAATTCAGTTAGAATTCGAGGGAGAGTACAAACTATACGACCAGTGAGTAAGAAGATGGCGTTTTTAGTCCTCAGAGAAAATGTTGAAACTGTACAGTGCTTGGTGCAAACTCAGCCTGATTCAGTGAGTGAGCAGATGGTGAAGTTCGCAAAAGCTCTCAGCCGTGAGTCTGTGGTGGACGTTCATGGCGTTGTTTCCATTCCGGCTACTCCTATTAAAGGCACCACTCAGCAGGTTTTTATTAGTTTTTTAGGGTTTCTAATTTCGTAGTGTTATGAAAATTTGATTTTGGAGTGTGAGTTGCATTGTTTAGGGTTATGATGGTATTGTGTTGTGTGGTTTTCTTCATTATAGGTGGAAATTCAAGTAACTAAATTGTATTGTGTGAGTAGGGCTGATCCCGTTTTACCCTTCCAAATAGAGGATGCTTCTAGAAGTGAAGCTGAATATGACAGGGCCAGTCAGGTACATTGCACCGACTGTTCATCGTTAGTTACGGCAAGCAATAACTATATTCCAGATCAATAATTTAAAACCACACTGATTAAGATTTGTGTTCTTCTACGTTTGTTGTATATAGATTCGGTTTATCTTTTTTTTGTGCATGTTATTTTGTGTTAATTTTGATCTTTTCCTTTATGTGAATGTCAATGTTTTTTTGTAATGGATGCAGGCTGGCGAACAACTTGTTCGTGTGAATCAGGATACACGATTAAATTTTAGAGTAATTGATTTGCAAACACCAGCTAATCAAGGAATTTTCCGTATTGCGGATAATGTTGAAGATGTAAAGCATTTTAATTCAATTTCAGTTGCCAATGTTATTTTGATGAGTTTGTTTCTTTACTTGTTTATTTACTGTTGAGTCATGTTTAATATATTTTCTGGAATAAACACATACAGAGAAACTTTCTTAAGAAATGTATTTTGTGTGTGATGCTATGCTGAATCATCTCGATAACTTTTGATTGTATTTTCGGGCAGGCATTCAGACAATTTCTAAGAGCCGAAGACTTCATTTCAATTCACACTCCAAAGTTGATTAATGGATCTAGTGAGGGTGGAGCTTCTGTTTTTAAACTGAATTACAAAGGGCATCCTGCATGCCTGGCTCAGTCACCTCAACTTCACAAGCAAATGGCAATATGTGGTGATTTTAACCGTGTTTTTGAGGTCGGGGCTGTGTATAGAGCAGAGGATTCCTTTACTCACAGGCATCTGTGTGAGTTTACTGGTCTTGATGCTGAAATGCGGATTGACTGCCACTATTTCGAGGTATATCTGTCACACTGGCTGATTTTGTGTGTTTGAAATCGTTGAGGGGCATAACCTGATTTACTGATGATTTGTCTTATTTTATTTGGCAGATTATGGATATAGTTGATAGATTGTTTGTCGCTATATTTGATTATTTGAACCAGAAATGTAAGAAGTATCTTGAAGCTGTGAGGAATCAGTACCCATTCGAACCGCTAAAGGTACTTTTTTTTTGTATTATCATAGTTGATCTTATGTAGTGGATATGTTGTTGTTATTTGTCATGCTTTATTGCATATTGTTGAGATGATTTGTTTAGTATGCGTACATGCTTTTTGCTGTGTAATATTAAATGTTAATTGAATTCATAGTTATTTGTTTTGATCTGACCATAACCCTGTGAATCTGCAGTACCTGCGAAATACTCTGCGGCTTACATACGAAGAAGGTATTGAGATGCTCAAGGTAAGCTAAAAATTTCTAAACTATTCAACTTGTAAGTGGTATATAAACAAACAAATGTGATACAATGAAGCTGAAACCTTTAGTCTTTCTTTTATCACGACGCTGAGTTAGAAAGGTGGGAGGTGATGGAGTTAAGGCACTGATAAGGAGTAGCCTGTGAACATTTTAATCTTATAGATTATCATACTAAAATCATCAATTAAAATTGACATTTTGGAGCCCTGTAAAGGATGCTGGCATGTGTGAATTGTCGTCTCCAGAAAACATTTCATCGGCAAAACCAACTGGAAATTGGTTAGGCTCCCACTGTTCTGTCCTAGGGTGTGACCGAGAGCTGATCCTCCGAAGTCTTCTAGTCTTAATTTTCTCTTATGGATAGTTCTAGGTGTAAAGTTTTTTGTTTAATCATTTGAGACTCAGAAAAGAACTTGTTTTAACTATGATCTAATTGGCTGGTAGAAATTTACTGTATGATTGTCTTGCATCTATTAATGATTTTGCTTTGCAGGAAGTTGGAGTAGAAATTGAGCCTTTTGGTGACTTGAATACTGAAGCTGAAAGGAAACTAGGCCAATTAGTTTTAGAAAAGTAATTCCCTTAATATTTTACTACTAAATATTATGTATTTATTGTTATAAGCTATTATGTAAAACTGATTTTGGATTTCAATTCTATTTATAGGTATGACACAGAGTTCTTTATCCTTCACCGATACCCTTTGGCCATAAGGCCGTTCTATACAATGCCTTGCTCTGATGATCAAAACTACAGTAACTCGTTTGACGTCTTTATCCGTGGTAAGAAGATACAACAAGTTATTTTTCTATGCAATGCTTTGATATGACACTATAGCGCACTTAACTCATCACGTTTTGTTCAACCGTCATGCTTCTCCAAATGTATTAGCACTTCCATTAAATCTCAAGTTTCCTGTTATTGTTGTTTGATTTGAACTTCTATATATTTGTTGTCGCTTAGGTGAGGAGATAATTTCAGGCGCTCAACGTATTCACGAACCAAAATTGTTAGAAGAACGTGCACATGCTTGTCGTATCAATGTTGATACCATATCTTATTACATTGATGCTTTCAGGTATTATTTATCATCACATATCCATGTAGCATTGAGTGTCGCTTATACCTATGTTTAGGATGTCTCTACTACTGAACCCTGGTTATTGTTGTTATTATTTTCTGGTGAAAAATTGTCTATCAGATAACTAAATGTGTGATCTTCCAGATATGGTGCACCACTGCATGGTGGCTTTGGCGCAGGCTTGGAGCGTGTTGTAATGCTCTTCTGTGGCCTCGATAATATTCGCATGACATCACTATTTCCACGTGACCCAAAAAGGATTACACCGTGA

Protein sequence

>MS.gene028001.t1

MSSPKCKEPAPAPSSSESSESISKKAAKLVKLRHRQQMAAAATTSVSNLSADPLATNYGNIPLEELQSKTPVHPVPRTQVKALDDSLVNNSVRIRGRVQTIRPVSKKMAFLVLRENVETVQCLVQTQPDSVSEQMVKFAKALSRESVVDVHGVVSIPATPIKGTTQQVEIQVTKLYCVSRADPVLPFQIEDASRSEAEYDRASQAGEQLVRVNQDTRLNFRVIDLQTPANQGIFRIADNVEDAFRQFLRAEDFISIHTPKLINGSSEGGASVFKLNYKGHPACLAQSPQLHKQMAICGDFNRVFEVGAVYRAEDSFTHRHLCEFTGLDAEMRIDCHYFEIMDIVDRLFVAIFDYLNQKCKKYLEAVRNQYPFEPLKYLRNTLRLTYEEGIEMLKEVGVEIEPFGDLNTEAERKLGQLVLEKYDTEFFILHRYPLAIRPFYTMPCSDDQNYSNSFDVFIRGEEIISGAQRIHEPKLLEERAHACRINVDTISYYIDAFRYGAPLHGGFGAGLERVVMLFCGLDNIRMTSLFPRDPKRITP