Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51548.t1 | XP_003588866.1 | 93.5 | 541 | 35 | 0 | 1 | 541 | 1 | 541 | 8.20E-287 | 995.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51548.t1 | Q9M084 | 68.0 | 500 | 150 | 2 | 52 | 541 | 59 | 558 | 2.5e-199 | 696.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51548.t1 | G7I885 | 93.5 | 541 | 35 | 0 | 1 | 541 | 1 | 541 | 5.9e-287 | 995.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene51548 | -0.811679 | 6.21E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene51548 | -0.844182 | 8.86E-59 | -1.69E-46 |
| MS.gene050226 | MS.gene51548 | -0.857857 | 1.23E-62 | -1.69E-46 |
| MS.gene050227 | MS.gene51548 | -0.847293 | 1.27E-59 | -1.69E-46 |
| MS.gene050228 | MS.gene51548 | -0.847951 | 8.35E-60 | -1.69E-46 |
| MS.gene050330 | MS.gene51548 | 0.803444 | 3.48E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene51548 | -0.814323 | 1.63E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene51548 | 0.813746 | 2.19E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene51548 | -0.838264 | 3.19E-57 | -1.69E-46 |
| MS.gene050750 | MS.gene51548 | -0.828868 | 7.08E-55 | -1.69E-46 |
| MS.gene050820 | MS.gene51548 | -0.816367 | 5.74E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene51548 | -0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene51548 | -0.82939 | 5.29E-55 | -1.69E-46 |
| MS.gene051983 | MS.gene51548 | -0.809734 | 1.63E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene51548 | -0.802965 | 4.37E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene51548 | -0.820778 | 5.73E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene51548 | -0.801038 | 1.09E-48 | -1.69E-46 |
| MS.gene052389 | MS.gene51548 | -0.81784 | 2.68E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene51548 | -0.834657 | 2.64E-56 | -1.69E-46 |
| MS.gene053494 | MS.gene51548 | -0.821788 | 3.35E-53 | -1.69E-46 |
| MS.gene053584 | MS.gene51548 | -0.812154 | 4.89E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene51548 | 0.806952 | 6.41E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene51548 | -0.838708 | 2.45E-57 | -1.69E-46 |
| MS.gene054405 | MS.gene51548 | -0.822736 | 2.02E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene51548 | -0.800981 | 1.12E-48 | -1.69E-46 |
| MS.gene054559 | MS.gene51548 | -0.802818 | 4.68E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene51548 | -0.800147 | 1.65E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene51548 | -0.846768 | 1.76E-59 | -1.69E-46 |
| MS.gene05510 | MS.gene51548 | -0.858037 | 1.08E-62 | -1.69E-46 |
| MS.gene055356 | MS.gene51548 | -0.80209 | 6.62E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene51548 | -0.801737 | 7.82E-49 | -1.69E-46 |
| MS.gene055367 | MS.gene51548 | -0.816269 | 6.03E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene51548 | -0.884446 | 1.90E-71 | -1.69E-46 |
| MS.gene05595 | MS.gene51548 | -0.82072 | 5.91E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene51548 | -0.824516 | 7.74E-54 | -1.69E-46 |
| MS.gene056723 | MS.gene51548 | -0.805553 | 1.26E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene51548 | -0.807375 | 5.21E-50 | -1.69E-46 |
| MS.gene057156 | MS.gene51548 | 0.831743 | 1.40E-55 | -1.69E-46 |
| MS.gene057469 | MS.gene51548 | -0.804093 | 2.55E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene51548 | -0.823322 | 1.47E-53 | -1.69E-46 |
| MS.gene057639 | MS.gene51548 | -0.802385 | 5.75E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene51548 | -0.803768 | 2.98E-49 | -1.69E-46 |
| MS.gene058139 | MS.gene51548 | -0.812162 | 4.87E-51 | -1.69E-46 |
| MS.gene058146 | MS.gene51548 | -0.807933 | 3.97E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene51548 | -0.852924 | 3.35E-61 | -1.69E-46 |
| MS.gene059161 | MS.gene51548 | -0.867635 | 1.18E-65 | -1.69E-46 |
| MS.gene059162 | MS.gene51548 | -0.8115 | 6.79E-51 | -1.69E-46 |
| MS.gene059609 | MS.gene51548 | -0.806437 | 8.23E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene51548 | -0.826033 | 3.39E-54 | -1.69E-46 |
| MS.gene060137 | MS.gene51548 | 0.817618 | 3.00E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene51548 | -0.80312 | 4.06E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene51548 | -0.812037 | 5.18E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene51548 | -0.815146 | 1.07E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene51548 | -0.812217 | 4.74E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene51548 | -0.811577 | 6.53E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene51548 | 0.848344 | 6.51E-60 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51548.t1 | MTR_1g014140 | 98.152 | 541 | 10 | 0 | 1 | 541 | 1 | 541 | 0.0 | 1098 |
| MS.gene51548.t1 | MTR_5g028360 | 70.826 | 545 | 138 | 4 | 1 | 541 | 62 | 589 | 0.0 | 768 |
| MS.gene51548.t1 | MTR_4g100920 | 25.304 | 494 | 287 | 16 | 87 | 536 | 86 | 541 | 2.41e-31 | 128 |
| MS.gene51548.t1 | MTR_8g102050 | 30.961 | 281 | 174 | 8 | 271 | 538 | 275 | 548 | 2.79e-28 | 119 |
| MS.gene51548.t1 | MTR_7g101050 | 31.560 | 282 | 173 | 10 | 271 | 538 | 298 | 573 | 4.18e-27 | 115 |
| MS.gene51548.t1 | MTR_2g036600 | 23.673 | 490 | 325 | 15 | 83 | 533 | 109 | 588 | 2.78e-22 | 101 |
| MS.gene51548.t1 | MTR_4g127770 | 22.200 | 491 | 322 | 15 | 87 | 533 | 601 | 1075 | 1.14e-19 | 93.6 |
| MS.gene51548.t1 | MTR_8g007295 | 22.490 | 498 | 296 | 18 | 90 | 533 | 111 | 572 | 2.75e-15 | 79.3 |
| MS.gene51548.t1 | MTR_4g127790 | 22.969 | 357 | 239 | 10 | 209 | 532 | 32 | 385 | 1.26e-14 | 76.3 |
| MS.gene51548.t1 | MTR_8g011530 | 23.019 | 265 | 191 | 7 | 278 | 534 | 367 | 626 | 1.69e-11 | 67.4 |
| MS.gene51548.t1 | MTR_4g052070 | 27.953 | 254 | 150 | 9 | 92 | 333 | 72 | 304 | 2.30e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51548.t1 | AT4G31180 | 64.632 | 557 | 179 | 4 | 3 | 541 | 2 | 558 | 0.0 | 731 |
| MS.gene51548.t1 | AT4G31180 | 64.632 | 557 | 179 | 4 | 3 | 541 | 2 | 558 | 0.0 | 731 |
| MS.gene51548.t1 | AT4G26870 | 65.631 | 515 | 171 | 4 | 28 | 541 | 23 | 532 | 0.0 | 691 |
| MS.gene51548.t1 | AT5G56680 | 30.882 | 272 | 168 | 8 | 278 | 536 | 303 | 567 | 1.85e-29 | 122 |
| MS.gene51548.t1 | AT4G17300 | 25.536 | 466 | 252 | 15 | 122 | 536 | 161 | 582 | 8.25e-28 | 117 |
| MS.gene51548.t1 | AT4G17300 | 25.536 | 466 | 252 | 15 | 122 | 536 | 141 | 562 | 1.06e-27 | 117 |
| MS.gene51548.t1 | AT1G70980 | 28.929 | 280 | 179 | 7 | 271 | 536 | 293 | 566 | 2.39e-25 | 110 |
Find 137 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTACATCGATTCTTTC+AGG | 0.151574 | 1.4:-7854305 | MS.gene51548:intron |
| ATTCCAGCCGCTCCTATTAA+AGG | 0.200895 | 1.4:-7857289 | MS.gene51548:CDS |
| CAAACAAATTAACACCTTTA+GGG | 0.270476 | 1.4:+7856050 | None:intergenic |
| CTTTGCGGCATCCTTCTTGC+AGG | 0.276045 | 1.4:+7857693 | None:intergenic |
| ATGTCAATATGTGGTGATTT+TGG | 0.279212 | 1.4:-7856384 | MS.gene51548:CDS |
| TTCTTAGTCATCAGAGAAAA+TGG | 0.279492 | 1.4:-7857427 | MS.gene51548:CDS |
| TCAAAAGAGTTACTGTAGTT+TGG | 0.284688 | 1.4:+7854615 | None:intergenic |
| GATCCCCTTGCTGTCAATTA+TGG | 0.290000 | 1.4:-7857601 | MS.gene51548:CDS |
| TATGTAAGCCGCAGAGTATT+TGG | 0.299031 | 1.4:+7855867 | None:intergenic |
| TGAAATTGAGAAGGCCATTC+AGG | 0.299926 | 1.4:-7857034 | MS.gene51548:intron |
| TGTTGTGAGGCACCTTTAAT+AGG | 0.308209 | 1.4:+7857277 | None:intergenic |
| TGGAAAATTCCTTGATTTGC+TGG | 0.311128 | 1.4:+7856725 | None:intergenic |
| AGGCATCTGTGCGAGTTTAC+AGG | 0.319353 | 1.4:-7856309 | MS.gene51548:CDS |
| CAAAAGAGTTACTGTAGTTT+GGG | 0.335107 | 1.4:+7854616 | None:intergenic |
| CACCGTACAGTGCTTGGTTC+AGG | 0.346864 | 1.4:-7857401 | MS.gene51548:CDS |
| CACAATACAGTTTCCTCACT+TGG | 0.354867 | 1.4:+7857115 | None:intergenic |
| CAGAAGATTCCTTTACTCAT+AGG | 0.359787 | 1.4:-7856329 | MS.gene51548:CDS |
| CACACTCCTAAGTTGATTGC+TGG | 0.375345 | 1.4:-7856495 | MS.gene51548:CDS |
| GTCCAGTCGTTGACATTGAC+AGG | 0.393463 | 1.4:+7857544 | None:intergenic |
| TAGCAAGGCATTGTATAAAA+TGG | 0.394303 | 1.4:+7854645 | None:intergenic |
| AGGTGGCGGCGGCAACTTCT+CGG | 0.397158 | 1.4:+7857653 | None:intergenic |
| GTACCACCACACGGTGGCTT+TGG | 0.402704 | 1.4:-7854132 | MS.gene51548:CDS |
| ACAACTTGTTCGTGTGAATC+AGG | 0.411639 | 1.4:-7856786 | MS.gene51548:CDS |
| CAAGAAGGATGCCGCAAAGC+TGG | 0.416596 | 1.4:-7857689 | MS.gene51548:CDS |
| CAAAGGGCAACCTGCATGCC+TGG | 0.419819 | 1.4:-7856433 | MS.gene51548:CDS |
| TACAGGTCTTGATGTTGAAA+TGG | 0.423398 | 1.4:-7856292 | MS.gene51548:CDS |
| AGGGTGGAGCTGCTGTCTTT+AGG | 0.428133 | 1.4:-7856464 | MS.gene51548:CDS |
| GGAGTAGAGATTGAACCTTT+TGG | 0.442706 | 1.4:-7854865 | MS.gene51548:CDS |
| CATTGACAGGGGTCTTCGAT+TGG | 0.443151 | 1.4:+7857557 | None:intergenic |
| AACACCTTTAGGGGTTCAAA+CGG | 0.444877 | 1.4:+7856060 | None:intergenic |
| ATCTGCGGACTCACTAAATC+AGG | 0.450583 | 1.4:+7857373 | None:intergenic |
| CTTGATTTGCTGGTGTTCGC+AGG | 0.452358 | 1.4:+7856735 | None:intergenic |
| AACGCCATCTTCTTCCCAAC+TGG | 0.452718 | 1.4:+7857448 | None:intergenic |
| GCCCTCCCACGGATTAGAAC+CGG | 0.456675 | 1.4:+7857484 | None:intergenic |
| GCAGCATCCTCGATATTAAT+CGG | 0.461821 | 1.4:+7857069 | None:intergenic |
| TGGAGCTGCTGTCTTTAGGC+TGG | 0.464922 | 1.4:-7856460 | MS.gene51548:CDS |
| GATTAAGAAACATTATTATG+AGG | 0.466183 | 1.4:-7856268 | MS.gene51548:intron |
| TTACATTTCCAACTTGAGAC+TGG | 0.472065 | 1.4:+7856699 | None:intergenic |
| TATTAAAGGTGCCTCACAAC+AGG | 0.473545 | 1.4:-7857275 | MS.gene51548:intron |
| CGGTGGCTTTGGAGTAGGCT+TGG | 0.490259 | 1.4:-7854121 | MS.gene51548:CDS |
| TTAGGCGAGGAGATAATATC+AGG | 0.491304 | 1.4:-7854402 | MS.gene51548:intron |
| TGAGGCTCTCAATGATTCAC+TGG | 0.499024 | 1.4:-7857515 | MS.gene51548:CDS |
| TGGTTTCACCGTACAGTGCT+TGG | 0.499781 | 1.4:-7857407 | MS.gene51548:CDS |
| AAAATGGTCTTACAGCCAAC+GGG | 0.502027 | 1.4:+7854661 | None:intergenic |
| GTCTTACAGCCAACGGGTAC+CGG | 0.506627 | 1.4:+7854667 | None:intergenic |
| TCAGTATTCAAGTCACCAAA+AGG | 0.506705 | 1.4:+7854850 | None:intergenic |
| CTAGATCCAGCAATCAACTT+AGG | 0.510006 | 1.4:+7856489 | None:intergenic |
| TTTAATAGGAGCGGCTGGAA+TGG | 0.513685 | 1.4:+7857291 | None:intergenic |
| GAGTCTATTGTCGATGTCGA+AGG | 0.513770 | 1.4:-7857322 | MS.gene51548:CDS |
| GCACCTTTAATAGGAGCGGC+TGG | 0.516328 | 1.4:+7857286 | None:intergenic |
| CACAAGCTATTCGACCAGTT+GGG | 0.517268 | 1.4:-7857462 | MS.gene51548:CDS |
| GCACAAGCTATTCGACCAGT+TGG | 0.517849 | 1.4:-7857463 | MS.gene51548:CDS |
| ACACCTTTAGGGGTTCAAAC+GGG | 0.524064 | 1.4:+7856061 | None:intergenic |
| CAGCCAACGGGTACCGGTGA+AGG | 0.524085 | 1.4:+7854673 | None:intergenic |
| CTGCGGCTTACATATGAAGA+AGG | 0.526092 | 1.4:-7855858 | MS.gene51548:CDS |
| TTCCAACTTGAGACTGGATG+TGG | 0.528293 | 1.4:+7856705 | None:intergenic |
| AATGAATATATATACCTGAA+TGG | 0.529761 | 1.4:+7857020 | None:intergenic |
| GAAACTGTATTGTGTGAGTA+AGG | 0.532678 | 1.4:-7857106 | MS.gene51548:CDS |
| AAACAAATTAACACCTTTAG+GGG | 0.533347 | 1.4:+7856051 | None:intergenic |
| GAATAGCTTGTGCCCTCCCA+CGG | 0.535699 | 1.4:+7857473 | None:intergenic |
| CTGCGAACACCAGCAAATCA+AGG | 0.537117 | 1.4:-7856734 | MS.gene51548:CDS |
| TTCCACATCCAGTCTCAAGT+TGG | 0.538148 | 1.4:-7856707 | MS.gene51548:CDS |
| GAAGTTGAGGTGACTGAGCC+AGG | 0.538658 | 1.4:+7856415 | None:intergenic |
| AGAAAGGAAACTAGGCCAGC+TGG | 0.539715 | 1.4:-7854824 | MS.gene51548:CDS |
| TCTTTAGGCTGGACTACAAA+GGG | 0.542694 | 1.4:-7856449 | MS.gene51548:CDS |
| CGATGTAGCAGAGGTGGCGG+CGG | 0.543849 | 1.4:+7857642 | None:intergenic |
| CCACACGGTGGCTTTGGAGT+AGG | 0.547341 | 1.4:-7854126 | MS.gene51548:CDS |
| AACAAGCCGGTTCTAATCCG+TGG | 0.547533 | 1.4:-7857490 | MS.gene51548:CDS |
| TTTGAACACAAAATGTAAGA+AGG | 0.547679 | 1.4:-7856109 | MS.gene51548:CDS |
| CCCCTGTCAATGTCAACGAC+TGG | 0.551263 | 1.4:-7857546 | MS.gene51548:CDS |
| TAAAATGGTCTTACAGCCAA+CGG | 0.552316 | 1.4:+7854660 | None:intergenic |
| TCGATATTAATCGGCAGAGT+AGG | 0.553228 | 1.4:+7857078 | None:intergenic |
| GGTGACTGAGCCAGGCATGC+AGG | 0.555621 | 1.4:+7856423 | None:intergenic |
| TCGATTGGAGCTCAATGAGC+GGG | 0.557785 | 1.4:+7857572 | None:intergenic |
| GACATTTGCTTGTGAAGTTG+AGG | 0.558674 | 1.4:+7856402 | None:intergenic |
| GCACAGATGCCTATGAGTAA+AGG | 0.560403 | 1.4:+7856320 | None:intergenic |
| CACAAGCAAATGTCAATATG+TGG | 0.561198 | 1.4:-7856393 | MS.gene51548:CDS |
| AGTCGATGTAGCAGAGGTGG+CGG | 0.572655 | 1.4:+7857639 | None:intergenic |
| CAGAGTTCTATATCCTTCAC+CGG | 0.573477 | 1.4:-7854686 | MS.gene51548:CDS |
| ATTAATCGGCAGAGTAGGAA+TGG | 0.575600 | 1.4:+7857083 | None:intergenic |
| TAGTTTGGGTTGTCATAGCA+AGG | 0.575643 | 1.4:+7854630 | None:intergenic |
| GAAGAACGTGCACAAGCTTG+CGG | 0.577219 | 1.4:-7854348 | MS.gene51548:CDS |
| TTTATCCACGTGACCCACTC+AGG | 0.577438 | 1.4:-7854047 | MS.gene51548:CDS |
| GTCTTTAGGCTGGACTACAA+AGG | 0.579932 | 1.4:-7856450 | MS.gene51548:CDS |
| TCGACCAGTTGGGAAGAAGA+TGG | 0.581394 | 1.4:-7857452 | MS.gene51548:CDS |
| AGACTCACGGCTGAGAGCGG+CGG | 0.581736 | 1.4:+7857339 | None:intergenic |
| TGCACAAGCTTGCGGCATTG+AGG | 0.583418 | 1.4:-7854340 | MS.gene51548:CDS |
| AATCATTGAGAGCCTCAACT+CGG | 0.583678 | 1.4:+7857521 | None:intergenic |
| ACTGAAGCAGAAAGGAAACT+AGG | 0.584857 | 1.4:-7854832 | MS.gene51548:CDS |
| GAGAGTCGATGTAGCAGAGG+TGG | 0.585897 | 1.4:+7857636 | None:intergenic |
| TACTCTGCCGATTAATATCG+AGG | 0.589627 | 1.4:-7857076 | MS.gene51548:CDS |
| TCCAGTCGTTGACATTGACA+GGG | 0.592334 | 1.4:+7857545 | None:intergenic |
| AGAGAGAGTCGATGTAGCAG+AGG | 0.593608 | 1.4:+7857633 | None:intergenic |
| ACTTGAATACTGAAGCAGAA+AGG | 0.595013 | 1.4:-7854840 | MS.gene51548:CDS |
| TGATTTAGTGAGTCCGCAGA+TGG | 0.596877 | 1.4:-7857371 | MS.gene51548:CDS |
| GTACCCGTTTGAACCCCTAA+AGG | 0.597654 | 1.4:-7856064 | MS.gene51548:intron |
| ATCATTGAGAGCCTCAACTC+GGG | 0.599803 | 1.4:+7857522 | None:intergenic |
| CAACGACTGGACCCGAGTTG+AGG | 0.600329 | 1.4:-7857533 | MS.gene51548:CDS |
| TCAAGAGCCGACACTGTCAT+CGG | 0.603493 | 1.4:-7857743 | MS.gene51548:CDS |
| GATCCTTCCGATGACAGTGT+CGG | 0.605021 | 1.4:+7857736 | None:intergenic |
| TGAGGCACCTTTAATAGGAG+CGG | 0.608618 | 1.4:+7857282 | None:intergenic |
| TATCCTTCACCGGTACCCGT+TGG | 0.609544 | 1.4:-7854676 | MS.gene51548:CDS |
| GCCGGTTCTAATCCGTGGGA+GGG | 0.610769 | 1.4:-7857485 | MS.gene51548:CDS |
| TTCGATTGGAGCTCAATGAG+CGG | 0.611035 | 1.4:+7857571 | None:intergenic |
| CAGCAATCAACTTAGGAGTG+TGG | 0.611888 | 1.4:+7856496 | None:intergenic |
| TGATTCACTGGAGAACAAGC+CGG | 0.613416 | 1.4:-7857503 | MS.gene51548:CDS |
| GCGGCAAATTTCACCATCTG+CGG | 0.614321 | 1.4:+7857358 | None:intergenic |
| ATTGCTGGATCTAGTGAGGG+TGG | 0.614640 | 1.4:-7856480 | MS.gene51548:CDS |
| ATACCATAATTGACAGCAAG+GGG | 0.614733 | 1.4:+7857598 | None:intergenic |
| ACAAGCCGGTTCTAATCCGT+GGG | 0.615482 | 1.4:-7857489 | MS.gene51548:CDS |
| TATTGTCGATGTCGAAGGTG+TGG | 0.616371 | 1.4:-7857317 | MS.gene51548:CDS |
| ATCATGGTGCAATCCTGAGT+GGG | 0.620490 | 1.4:+7854034 | None:intergenic |
| AATAGACTCACGGCTGAGAG+CGG | 0.623488 | 1.4:+7857336 | None:intergenic |
| AGCCGGTTCTAATCCGTGGG+AGG | 0.623958 | 1.4:-7857486 | MS.gene51548:CDS |
| AAGTGAAGTTGAAATTGAGA+AGG | 0.624126 | 1.4:-7857043 | MS.gene51548:CDS |
| GAGCCGACACTGTCATCGGA+AGG | 0.625324 | 1.4:-7857739 | MS.gene51548:CDS |
| TAAGAAGGATCTCGAAGCTG+TGG | 0.629352 | 1.4:-7856094 | MS.gene51548:CDS |
| GTTGATTGCTGGATCTAGTG+AGG | 0.632210 | 1.4:-7856484 | MS.gene51548:CDS |
| CAATACCATAATTGACAGCA+AGG | 0.634292 | 1.4:+7857596 | None:intergenic |
| CGTGTAGTAATGCTCTTCTG+TGG | 0.635161 | 1.4:-7854096 | MS.gene51548:CDS |
| TGCCTGAACCAAGCACTGTA+CGG | 0.635520 | 1.4:+7857399 | None:intergenic |
| ATCATAACCAACCTGTTGTG+AGG | 0.639858 | 1.4:+7857264 | None:intergenic |
| AGAAGGTATTCAGATGCTCA+AGG | 0.641602 | 1.4:-7855841 | MS.gene51548:intron |
| TTGATTGCTGGATCTAGTGA+GGG | 0.644845 | 1.4:-7856483 | MS.gene51548:CDS |
| ACTCCAAAGCCACCGTGTGG+TGG | 0.646949 | 1.4:+7854129 | None:intergenic |
| CATCATGGTGCAATCCTGAG+TGG | 0.650761 | 1.4:+7854033 | None:intergenic |
| CGACATCGACAATAGACTCA+CGG | 0.651944 | 1.4:+7857326 | None:intergenic |
| GAATCTTCTGCTCTAAACAC+AGG | 0.652142 | 1.4:+7856342 | None:intergenic |
| AGATATGGTGTACCACCACA+CGG | 0.671410 | 1.4:-7854141 | MS.gene51548:CDS |
| TATAGGTTGAAATCCAAGTG+AGG | 0.674003 | 1.4:-7857128 | MS.gene51548:intron |
| GCAATCCTGAGTGGGTCACG+TGG | 0.689157 | 1.4:+7854042 | None:intergenic |
| AATACCATAATTGACAGCAA+GGG | 0.690003 | 1.4:+7857597 | None:intergenic |
| TGGCGGCGGCAACTTCTCGG+CGG | 0.706873 | 1.4:+7857656 | None:intergenic |
| CCTACTCCAAAGCCACCGTG+TGG | 0.729566 | 1.4:+7854126 | None:intergenic |
| CCAGTCGTTGACATTGACAG+GGG | 0.731951 | 1.4:+7857546 | None:intergenic |
| AGTATCTTCCAAATACTCTG+CGG | 0.740430 | 1.4:-7855875 | MS.gene51548:CDS |
| TATGGTGTACCACCACACGG+TGG | 0.820152 | 1.4:-7854138 | MS.gene51548:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATAATATTAGAGAAAAT+AGG | + | chr1.4:7855124-7855143 | None:intergenic | 15.0% |
| !! | ATTATATAAATGTCATTGAA+AGG | - | chr1.4:7856236-7856255 | MS.gene51548:intron | 15.0% |
| !! | TAACTATGATATATATAAGA+TGG | - | chr1.4:7856835-7856854 | MS.gene51548:intron | 15.0% |
| !! | TTTCAATTTAATTCAAGAAA+AGG | - | chr1.4:7856459-7856478 | MS.gene51548:CDS | 15.0% |
| !! | TTTCTTGAATTAAATTGAAA+AGG | + | chr1.4:7856459-7856478 | None:intergenic | 15.0% |
| !!! | GATTTTGATTTTGATTATAA+TGG | - | chr1.4:7854624-7854643 | MS.gene51548:CDS | 15.0% |
| !!! | TCTGGTTATAATAATTTTAT+GGG | - | chr1.4:7857588-7857607 | MS.gene51548:CDS | 15.0% |
| !! | AAATTGATGAAAATGTACTT+GGG | - | chr1.4:7856278-7856297 | MS.gene51548:CDS | 20.0% |
| !! | AACCAAATAATTGTTACTAT+TGG | - | chr1.4:7856429-7856448 | MS.gene51548:CDS | 20.0% |
| !! | AATAGTAACAATTATTTGGT+TGG | + | chr1.4:7856430-7856449 | None:intergenic | 20.0% |
| !! | AATGAATATATATACCTGAA+TGG | + | chr1.4:7854778-7854797 | None:intergenic | 20.0% |
| !! | ACCAAATAATTGTTACTATT+GGG | - | chr1.4:7856430-7856449 | MS.gene51548:CDS | 20.0% |
| !! | ATCAAGAAATTGTTACTATT+GGG | - | chr1.4:7856617-7856636 | MS.gene51548:intron | 20.0% |
| !! | GATTAAGAAACATTATTATG+AGG | - | chr1.4:7855527-7855546 | MS.gene51548:intron | 20.0% |
| !! | TAAATTGATGAAAATGTACT+TGG | - | chr1.4:7856277-7856296 | MS.gene51548:CDS | 20.0% |
| !! | TCAATTACAACATTTCTAAT+CGG | + | chr1.4:7854802-7854821 | None:intergenic | 20.0% |
| !! | TCAATTTATTTGTTTGTAGT+GGG | - | chr1.4:7855805-7855824 | MS.gene51548:intron | 20.0% |
| !! | TGTAATTCTATTTATAGGTA+TGG | - | chr1.4:7857084-7857103 | MS.gene51548:CDS | 20.0% |
| !! | TTCAATTTATTTGTTTGTAG+TGG | - | chr1.4:7855804-7855823 | MS.gene51548:intron | 20.0% |
| !!! | CATTTCTTAAGTTAGTTTAT+CGG | + | chr1.4:7855208-7855227 | None:intergenic | 20.0% |
| !!! | CTCTGGTTATAATAATTTTA+TGG | - | chr1.4:7857587-7857606 | MS.gene51548:CDS | 20.0% |
| !!! | CTGGTTATAATAATTTTATG+GGG | - | chr1.4:7857589-7857608 | MS.gene51548:CDS | 20.0% |
| !!! | TCAATTTTACAAAATAGACA+GGG | + | chr1.4:7856081-7856100 | None:intergenic | 20.0% |
| !!! | TGTCTATTTTGTAAAATTGA+GGG | - | chr1.4:7856081-7856100 | MS.gene51548:CDS | 20.0% |
| !!! | TGTTGTTTTGTTTAATATAC+TGG | - | chr1.4:7854928-7854947 | MS.gene51548:intron | 20.0% |
| ! | AAACAAATTAACACCTTTAG+GGG | + | chr1.4:7855747-7855766 | None:intergenic | 25.0% |
| ! | ACATTATTATGAGGTACATT+TGG | - | chr1.4:7855536-7855555 | MS.gene51548:intron | 25.0% |
| ! | AGGACATATAGTTATTTGAT+TGG | - | chr1.4:7856479-7856498 | MS.gene51548:CDS | 25.0% |
| ! | ATCAGAAACAAAAAGCAAAA+AGG | - | chr1.4:7854079-7854098 | MS.gene51548:CDS | 25.0% |
| ! | CAAACAAATTAACACCTTTA+GGG | + | chr1.4:7855748-7855767 | None:intergenic | 25.0% |
| ! | CATCAAGAAATTGTTACTAT+TGG | - | chr1.4:7856616-7856635 | MS.gene51548:intron | 25.0% |
| ! | CCAAATAATTGTTACTATTG+GGG | - | chr1.4:7856431-7856450 | MS.gene51548:CDS | 25.0% |
| ! | GATAAACAAACAAATGTGAT+AGG | - | chr1.4:7856018-7856037 | MS.gene51548:intron | 25.0% |
| ! | GTTCAATGTCTTTGTTAATA+CGG | - | chr1.4:7857538-7857557 | MS.gene51548:CDS | 25.0% |
| ! | TATAAGATTAAACTGTACAC+AGG | + | chr1.4:7856136-7856155 | None:intergenic | 25.0% |
| ! | TCAAGAAATTGTTACTATTG+GGG | - | chr1.4:7856618-7856637 | MS.gene51548:intron | 25.0% |
| ! | TCGACTGTAATTCTATTTAT+AGG | - | chr1.4:7857079-7857098 | MS.gene51548:CDS | 25.0% |
| ! | TGATTGATCATTTACAGATA+TGG | - | chr1.4:7857639-7857658 | MS.gene51548:CDS | 25.0% |
| ! | TTCAATGTCTTTGTTAATAC+GGG | - | chr1.4:7857539-7857558 | MS.gene51548:CDS | 25.0% |
| ! | TTTAAACTTCACTACAAGAT+TGG | + | chr1.4:7856186-7856205 | None:intergenic | 25.0% |
| ! | TTTAGTCATTTCATTGATGA+TGG | - | chr1.4:7856357-7856376 | MS.gene51548:CDS | 25.0% |
| ! | TTTGAACACAAAATGTAAGA+AGG | - | chr1.4:7855686-7855705 | MS.gene51548:intron | 25.0% |
| !! | AACTTAAGAAATGCATTTTG+CGG | - | chr1.4:7855215-7855234 | MS.gene51548:intron | 25.0% |
| !! | AATGCTTTGTTATGACAATT+TGG | - | chr1.4:7857249-7857268 | MS.gene51548:intron | 25.0% |
| !! | AGTTATAAAAGATTTGAGAC+AGG | + | chr1.4:7857014-7857033 | None:intergenic | 25.0% |
| !! | CTAAATGAGATCTCATTTTA+TGG | + | chr1.4:7856342-7856361 | None:intergenic | 25.0% |
| !! | CTCAATTTTACAAAATAGAC+AGG | + | chr1.4:7856082-7856101 | None:intergenic | 25.0% |
| !! | CTGTCTATTTTGTAAAATTG+AGG | - | chr1.4:7856080-7856099 | MS.gene51548:CDS | 25.0% |
| !! | GTCTATTTTGTAAAATTGAG+GGG | - | chr1.4:7856082-7856101 | MS.gene51548:CDS | 25.0% |
| !! | GTTATAAAAGATTTGAGACA+GGG | + | chr1.4:7857013-7857032 | None:intergenic | 25.0% |
| !! | GTTATGATATCTTGTTACTT+AGG | - | chr1.4:7854546-7854565 | MS.gene51548:intron | 25.0% |
| !! | TGGAATTTTCAAAAATTGGA+GGG | + | chr1.4:7856410-7856429 | None:intergenic | 25.0% |
| !! | TGGTTGGAATTTTCAAAAAT+TGG | + | chr1.4:7856414-7856433 | None:intergenic | 25.0% |
| !! | TTGGAATTTTCAAAAATTGG+AGG | + | chr1.4:7856411-7856430 | None:intergenic | 25.0% |
| !!! | ACTGATACTTTTCTGTTTTT+TGG | - | chr1.4:7855616-7855635 | MS.gene51548:intron | 25.0% |
| !!! | CTAAAGGTGTTAATTTGTTT+GGG | - | chr1.4:7855747-7855766 | MS.gene51548:intron | 25.0% |
| !!! | GTTGATGGTGATTTTTTAAT+TGG | - | chr1.4:7854973-7854992 | MS.gene51548:intron | 25.0% |
| !!! | TGATCAATCATTTAGTTTTC+TGG | + | chr1.4:7857629-7857648 | None:intergenic | 25.0% |
| !!! | TTGATTATAATGGTGTTATG+TGG | - | chr1.4:7854634-7854653 | MS.gene51548:CDS | 25.0% |
| AAGTGAAGTTGAAATTGAGA+AGG | - | chr1.4:7854752-7854771 | MS.gene51548:intron | 30.0% | |
| AATACCATAATTGACAGCAA+GGG | + | chr1.4:7854201-7854220 | None:intergenic | 30.0% | |
| ACACACATCTTTAATCAGAA+AGG | + | chr1.4:7854904-7854923 | None:intergenic | 30.0% | |
| CAAAAGAGTTACTGTAGTTT+GGG | + | chr1.4:7857182-7857201 | None:intergenic | 30.0% | |
| CAAGTTAGTGACACTTATTT+AGG | - | chr1.4:7856506-7856525 | MS.gene51548:CDS | 30.0% | |
| CCAAACAAATTAACACCTTT+AGG | + | chr1.4:7855749-7855768 | None:intergenic | 30.0% | |
| CCCCAATAGTAACAATTATT+TGG | + | chr1.4:7856434-7856453 | None:intergenic | 30.0% | |
| TCAAAAGAGTTACTGTAGTT+TGG | + | chr1.4:7857183-7857202 | None:intergenic | 30.0% | |
| TTCTTAGTCATCAGAGAAAA+TGG | - | chr1.4:7854368-7854387 | MS.gene51548:CDS | 30.0% | |
| TTTACATCAAGACTCAGAAA+AGG | - | chr1.4:7856799-7856818 | MS.gene51548:intron | 30.0% | |
| TTTGTGAGTTGTGATTGTTT+AGG | - | chr1.4:7854602-7854621 | MS.gene51548:CDS | 30.0% | |
| ! | ATGTCAATATGTGGTGATTT+TGG | - | chr1.4:7855411-7855430 | MS.gene51548:intron | 30.0% |
| ! | TATGGAAGTACAAACACATT+TGG | + | chr1.4:7857318-7857337 | None:intergenic | 30.0% |
| ! | TATTTTGTAAAATTGAGGGG+TGG | - | chr1.4:7856085-7856104 | MS.gene51548:CDS | 30.0% |
| ! | TCTTAAGTTAGTTTATCGGT+AGG | + | chr1.4:7855204-7855223 | None:intergenic | 30.0% |
| !! | CCTAAAGGTGTTAATTTGTT+TGG | - | chr1.4:7855746-7855765 | MS.gene51548:intron | 30.0% |
| !! | TAGCAAGGCATTGTATAAAA+TGG | + | chr1.4:7857153-7857172 | None:intergenic | 30.0% |
| !! | TTCATTGATGATGGTAGTTT+GGG | - | chr1.4:7856366-7856385 | MS.gene51548:CDS | 30.0% |
| !! | TTTCATTGATGATGGTAGTT+TGG | - | chr1.4:7856365-7856384 | MS.gene51548:CDS | 30.0% |
| !! | TTTCCTCTTGTAGTTAGTTT+TGG | - | chr1.4:7856563-7856582 | MS.gene51548:intron | 30.0% |
| !!! | ATACTTTTCTGTTTTTTGGC+AGG | - | chr1.4:7855620-7855639 | MS.gene51548:intron | 30.0% |
| !!! | ATTACTTTTCTAAAACCAGC+TGG | + | chr1.4:7856989-7857008 | None:intergenic | 30.0% |
| !!! | TATGTGGTTTTGTTCTCTAT+AGG | - | chr1.4:7854650-7854669 | MS.gene51548:CDS | 30.0% |
| !!! | TTCCTCTTGTAGTTAGTTTT+GGG | - | chr1.4:7856564-7856583 | MS.gene51548:intron | 30.0% |
| AACTATTGTTGAGGAATTCC+TGG | - | chr1.4:7856534-7856553 | MS.gene51548:CDS | 35.0% | |
| ACAAAGACATTGAACACGAT+AGG | + | chr1.4:7857533-7857552 | None:intergenic | 35.0% | |
| ACTATTGTTGAGGAATTCCT+GGG | - | chr1.4:7856535-7856554 | MS.gene51548:CDS | 35.0% | |
| ACTTGAATACTGAAGCAGAA+AGG | - | chr1.4:7856955-7856974 | MS.gene51548:intron | 35.0% | |
| AGTATCTTCCAAATACTCTG+CGG | - | chr1.4:7855920-7855939 | MS.gene51548:intron | 35.0% | |
| ATACCATAATTGACAGCAAG+GGG | + | chr1.4:7854200-7854219 | None:intergenic | 35.0% | |
| CAAATGTGATAGGATGATGA+TGG | - | chr1.4:7856028-7856047 | MS.gene51548:intron | 35.0% | |
| CAATACCATAATTGACAGCA+AGG | + | chr1.4:7854202-7854221 | None:intergenic | 35.0% | |
| CACAAGCAAATGTCAATATG+TGG | - | chr1.4:7855402-7855421 | MS.gene51548:intron | 35.0% | |
| CACCATCAACATTCATGTAA+GGG | + | chr1.4:7854963-7854982 | None:intergenic | 35.0% | |
| CAGAAGATTCCTTTACTCAT+AGG | - | chr1.4:7855466-7855485 | MS.gene51548:intron | 35.0% | |
| CTTTGTTAATACGGGTGTTT+AGG | - | chr1.4:7857547-7857566 | MS.gene51548:CDS | 35.0% | |
| GAAACTGTATTGTGTGAGTA+AGG | - | chr1.4:7854689-7854708 | MS.gene51548:CDS | 35.0% | |
| GAAGATACTGCACATTCATA+GGG | + | chr1.4:7855909-7855928 | None:intergenic | 35.0% | |
| GGAATTCCTCAACAATAGTT+AGG | + | chr1.4:7856534-7856553 | None:intergenic | 35.0% | |
| TACAGGTCTTGATGTTGAAA+TGG | - | chr1.4:7855503-7855522 | MS.gene51548:intron | 35.0% | |
| TAGGTTCCTAACTATTGTTG+AGG | - | chr1.4:7856525-7856544 | MS.gene51548:CDS | 35.0% | |
| TCACCATCAACATTCATGTA+AGG | + | chr1.4:7854964-7854983 | None:intergenic | 35.0% | |
| TCAGTATTCAAGTCACCAAA+AGG | + | chr1.4:7856948-7856967 | None:intergenic | 35.0% | |
| TTACATTTCCAACTTGAGAC+TGG | + | chr1.4:7855099-7855118 | None:intergenic | 35.0% | |
| ! | CCATAAAAGCTGAAGCTTTT+GGG | - | chr1.4:7857333-7857352 | MS.gene51548:CDS | 35.0% |
| ! | CTATTCAATCCTTGTTGCTT+AGG | - | chr1.4:7857375-7857394 | MS.gene51548:CDS | 35.0% |
| ! | GAGTAATGATTTTGCTTTGC+AGG | - | chr1.4:7856902-7856921 | MS.gene51548:intron | 35.0% |
| ! | GCACGCAATTAATCATGTTT+TGG | - | chr1.4:7857273-7857292 | MS.gene51548:intron | 35.0% |
| ! | TAAAATGGTCTTACAGCCAA+CGG | + | chr1.4:7857138-7857157 | None:intergenic | 35.0% |
| ! | TATAGGTTGAAATCCAAGTG+AGG | - | chr1.4:7854667-7854686 | MS.gene51548:CDS | 35.0% |
| ! | TATCCACATGCCTGAATTTT+TGG | - | chr1.4:7857425-7857444 | MS.gene51548:CDS | 35.0% |
| ! | TCCATAAAAGCTGAAGCTTT+TGG | - | chr1.4:7857332-7857351 | MS.gene51548:CDS | 35.0% |
| ! | TCTTTTGATGTCTTCATTCG+AGG | - | chr1.4:7857195-7857214 | MS.gene51548:intron | 35.0% |
| ! | TGGAAGTTTAAGCACTGTTA+GGG | - | chr1.4:7856105-7856124 | MS.gene51548:CDS | 35.0% |
| ! | TTTGCGTTTGAAATTGTCGA+GGG | - | chr1.4:7855579-7855598 | MS.gene51548:intron | 35.0% |
| !! | TCATTGATGATGGTAGTTTG+GGG | - | chr1.4:7856367-7856386 | MS.gene51548:CDS | 35.0% |
| !! | TGGAAAATTCCTTGATTTGC+TGG | + | chr1.4:7855073-7855092 | None:intergenic | 35.0% |
| !!! | ATTTTTTAATTGGTGCAGGC+TGG | - | chr1.4:7854983-7855002 | MS.gene51548:intron | 35.0% |
| !!! | GGTGATTTTTTAATTGGTGC+AGG | - | chr1.4:7854979-7854998 | MS.gene51548:intron | 35.0% |
| !!! | TGTAGTTAGTTTTGGGAGTT+TGG | - | chr1.4:7856571-7856590 | MS.gene51548:intron | 35.0% |
| !!! | TTCTGTTTTTTGGCAGGTTA+TGG | - | chr1.4:7855626-7855645 | MS.gene51548:intron | 35.0% |
| AATCATTGAGAGCCTCAACT+CGG | + | chr1.4:7854277-7854296 | None:intergenic | 40.0% | |
| ACTGAAGCAGAAAGGAAACT+AGG | - | chr1.4:7856963-7856982 | MS.gene51548:intron | 40.0% | |
| ATAACCAGAGCTCAGTAAGA+GGG | + | chr1.4:7857577-7857596 | None:intergenic | 40.0% | |
| ATCATAACCAACCTGTTGTG+AGG | + | chr1.4:7854534-7854553 | None:intergenic | 40.0% | |
| ATTAATCGGCAGAGTAGGAA+TGG | + | chr1.4:7854715-7854734 | None:intergenic | 40.0% | |
| CACAATACAGTTTCCTCACT+TGG | + | chr1.4:7854683-7854702 | None:intergenic | 40.0% | |
| CAGAGTTCTATATCCTTCAC+CGG | - | chr1.4:7857109-7857128 | MS.gene51548:CDS | 40.0% | |
| CAGGACCAATCTCAAAAACA+CGG | + | chr1.4:7855437-7855456 | None:intergenic | 40.0% | |
| CTACAATCAAGATGAGAGTG+TGG | - | chr1.4:7854836-7854855 | MS.gene51548:CDS | 40.0% | |
| CTAGATCCAGCAATCAACTT+AGG | + | chr1.4:7855309-7855328 | None:intergenic | 40.0% | |
| CTATTGTTGAGGAATTCCTG+GGG | - | chr1.4:7856536-7856555 | MS.gene51548:CDS | 40.0% | |
| CTCCCAAAACTAACTACAAG+AGG | + | chr1.4:7856569-7856588 | None:intergenic | 40.0% | |
| CTCCCTTACATGAATGTTGA+TGG | - | chr1.4:7854958-7854977 | MS.gene51548:intron | 40.0% | |
| CTTCCAAAAATTCAGGCATG+TGG | + | chr1.4:7857431-7857450 | None:intergenic | 40.0% | |
| GAAAATGTACTTGGGTAGAC+AGG | - | chr1.4:7856286-7856305 | MS.gene51548:CDS | 40.0% | |
| GACAGGGATAAAAGACGTAA+AGG | + | chr1.4:7856065-7856084 | None:intergenic | 40.0% | |
| GACATTTGCTTGTGAAGTTG+AGG | + | chr1.4:7855396-7855415 | None:intergenic | 40.0% | |
| GCACGTTCTTCCAAAAATTC+AGG | + | chr1.4:7857438-7857457 | None:intergenic | 40.0% | |
| GCAGCATCCTCGATATTAAT+CGG | + | chr1.4:7854729-7854748 | None:intergenic | 40.0% | |
| GGAAGATACTGCACATTCAT+AGG | + | chr1.4:7855910-7855929 | None:intergenic | 40.0% | |
| TACAAGAGGAAAAATACCCC+AGG | + | chr1.4:7856555-7856574 | None:intergenic | 40.0% | |
| TATAACCAGAGCTCAGTAAG+AGG | + | chr1.4:7857578-7857597 | None:intergenic | 40.0% | |
| TCGATATTAATCGGCAGAGT+AGG | + | chr1.4:7854720-7854739 | None:intergenic | 40.0% | |
| TCTTTAGGCTGGACTACAAA+GGG | - | chr1.4:7855346-7855365 | MS.gene51548:intron | 40.0% | |
| TGAAATTGAGAAGGCCATTC+AGG | - | chr1.4:7854761-7854780 | MS.gene51548:intron | 40.0% | |
| TTAGGCGAGGAGATAATATC+AGG | - | chr1.4:7857393-7857412 | MS.gene51548:CDS | 40.0% | |
| TTGATTGCTGGATCTAGTGA+GGG | - | chr1.4:7855312-7855331 | MS.gene51548:intron | 40.0% | |
| ! | AAAATGGTCTTACAGCCAAC+GGG | + | chr1.4:7857137-7857156 | None:intergenic | 40.0% |
| ! | AACACCTTTAGGGGTTCAAA+CGG | + | chr1.4:7855738-7855757 | None:intergenic | 40.0% |
| ! | ACAACTTGTTCGTGTGAATC+AGG | - | chr1.4:7855009-7855028 | MS.gene51548:intron | 40.0% |
| ! | ACACATTTGGAGAAGCATGA+TGG | + | chr1.4:7857305-7857324 | None:intergenic | 40.0% |
| ! | ATGCATTTTGCGGTGTGATA+CGG | - | chr1.4:7855225-7855244 | MS.gene51548:intron | 40.0% |
| ! | CCCAAAAGCTTCAGCTTTTA+TGG | + | chr1.4:7857336-7857355 | None:intergenic | 40.0% |
| ! | GAATCTTCTGCTCTAAACAC+AGG | + | chr1.4:7855456-7855475 | None:intergenic | 40.0% |
| ! | GATTTTGCTTTGCAGGAAGT+TGG | - | chr1.4:7856909-7856928 | MS.gene51548:intron | 40.0% |
| ! | GGAGTAGAGATTGAACCTTT+TGG | - | chr1.4:7856930-7856949 | MS.gene51548:intron | 40.0% |
| ! | GTGGAAGTTTAAGCACTGTT+AGG | - | chr1.4:7856104-7856123 | MS.gene51548:CDS | 40.0% |
| ! | GTTGCTGCTTGTAAGTTTGT+TGG | - | chr1.4:7855170-7855189 | MS.gene51548:intron | 40.0% |
| ! | GTTTGCGTTTGAAATTGTCG+AGG | - | chr1.4:7855578-7855597 | MS.gene51548:intron | 40.0% |
| ! | TACTCTGCCGATTAATATCG+AGG | - | chr1.4:7854719-7854738 | MS.gene51548:intron | 40.0% |
| ! | TATGTAAGCCGCAGAGTATT+TGG | + | chr1.4:7855931-7855950 | None:intergenic | 40.0% |
| ! | TGTTGTGAGGCACCTTTAAT+AGG | + | chr1.4:7854521-7854540 | None:intergenic | 40.0% |
| !! | AGAAGGTATTCAGATGCTCA+AGG | - | chr1.4:7855954-7855973 | MS.gene51548:intron | 40.0% |
| !! | ATGTGATAGGATGATGATGG+CGG | - | chr1.4:7856031-7856050 | MS.gene51548:intron | 40.0% |
| !! | CTGCTTACATCGATTCTTTC+AGG | - | chr1.4:7857490-7857509 | MS.gene51548:CDS | 40.0% |
| !! | TAGTTTGGGTTGTCATAGCA+AGG | + | chr1.4:7857168-7857187 | None:intergenic | 40.0% |
| !! | TATTAAAGGTGCCTCACAAC+AGG | - | chr1.4:7854520-7854539 | MS.gene51548:intron | 40.0% |
| !!! | TTTGGCCGTGTTTTTGAGAT+TGG | - | chr1.4:7855429-7855448 | MS.gene51548:intron | 40.0% |
| AAGCAAAAAGGCCTGCAAGA+AGG | - | chr1.4:7854091-7854110 | MS.gene51548:CDS | 45.0% | |
| AGATATGGTGTACCACCACA+CGG | - | chr1.4:7857654-7857673 | MS.gene51548:CDS | 45.0% | |
| ATCATTGAGAGCCTCAACTC+GGG | + | chr1.4:7854276-7854295 | None:intergenic | 45.0% | |
| ATCTGCGGACTCACTAAATC+AGG | + | chr1.4:7854425-7854444 | None:intergenic | 45.0% | |
| ATTCCAGCCGCTCCTATTAA+AGG | - | chr1.4:7854506-7854525 | MS.gene51548:intron | 45.0% | |
| CACAAGCTATTCGACCAGTT+GGG | - | chr1.4:7854333-7854352 | MS.gene51548:CDS | 45.0% | |
| CAGCAATCAACTTAGGAGTG+TGG | + | chr1.4:7855302-7855321 | None:intergenic | 45.0% | |
| CGACATCGACAATAGACTCA+CGG | + | chr1.4:7854472-7854491 | None:intergenic | 45.0% | |
| CGTGTAGTAATGCTCTTCTG+TGG | - | chr1.4:7857699-7857718 | MS.gene51548:CDS | 45.0% | |
| CTGCGGCTTACATATGAAGA+AGG | - | chr1.4:7855937-7855956 | MS.gene51548:intron | 45.0% | |
| GAGTCTATTGTCGATGTCGA+AGG | - | chr1.4:7854473-7854492 | MS.gene51548:intron | 45.0% | |
| GCACAGATGCCTATGAGTAA+AGG | + | chr1.4:7855478-7855497 | None:intergenic | 45.0% | |
| GTCTTTAGGCTGGACTACAA+AGG | - | chr1.4:7855345-7855364 | MS.gene51548:intron | 45.0% | |
| GTTGATTGCTGGATCTAGTG+AGG | - | chr1.4:7855311-7855330 | MS.gene51548:intron | 45.0% | |
| TAACCAGAGCTCAGTAAGAG+GGG | + | chr1.4:7857576-7857595 | None:intergenic | 45.0% | |
| TAAGAAGGATCTCGAAGCTG+TGG | - | chr1.4:7855701-7855720 | MS.gene51548:intron | 45.0% | |
| TATTGTCGATGTCGAAGGTG+TGG | - | chr1.4:7854478-7854497 | MS.gene51548:intron | 45.0% | |
| TCATTACTCGCTGCAAGACA+AGG | + | chr1.4:7856891-7856910 | None:intergenic | 45.0% | |
| TCCAGTCGTTGACATTGACA+GGG | + | chr1.4:7854253-7854272 | None:intergenic | 45.0% | |
| TGAGGCTCTCAATGATTCAC+TGG | - | chr1.4:7854280-7854299 | MS.gene51548:intron | 45.0% | |
| TGATTCACTGGAGAACAAGC+CGG | - | chr1.4:7854292-7854311 | MS.gene51548:intron | 45.0% | |
| TGATTTAGTGAGTCCGCAGA+TGG | - | chr1.4:7854424-7854443 | MS.gene51548:intron | 45.0% | |
| TTCCAACTTGAGACTGGATG+TGG | + | chr1.4:7855093-7855112 | None:intergenic | 45.0% | |
| TTCCACATCCAGTCTCAAGT+TGG | - | chr1.4:7855088-7855107 | MS.gene51548:intron | 45.0% | |
| TTCGATTGGAGCTCAATGAG+CGG | + | chr1.4:7854227-7854246 | None:intergenic | 45.0% | |
| TTTAATAGGAGCGGCTGGAA+TGG | + | chr1.4:7854507-7854526 | None:intergenic | 45.0% | |
| ! | ACACCTTTAGGGGTTCAAAC+GGG | + | chr1.4:7855737-7855756 | None:intergenic | 45.0% |
| ! | GATCCCCTTGCTGTCAATTA+TGG | - | chr1.4:7854194-7854213 | MS.gene51548:intron | 45.0% |
| ! | TGAGGCACCTTTAATAGGAG+CGG | + | chr1.4:7854516-7854535 | None:intergenic | 45.0% |
| !! | CACACTCCTAAGTTGATTGC+TGG | - | chr1.4:7855300-7855319 | MS.gene51548:intron | 45.0% |
| AACGCCATCTTCTTCCCAAC+TGG | + | chr1.4:7854350-7854369 | None:intergenic | 50.0% | |
| AATAGACTCACGGCTGAGAG+CGG | + | chr1.4:7854462-7854481 | None:intergenic | 50.0% | |
| AGAAAGGAAACTAGGCCAGC+TGG | - | chr1.4:7856971-7856990 | MS.gene51548:intron | 50.0% | |
| AGAGAGAGTCGATGTAGCAG+AGG | + | chr1.4:7854165-7854184 | None:intergenic | 50.0% | |
| AGGCATCTGTGCGAGTTTAC+AGG | - | chr1.4:7855486-7855505 | MS.gene51548:intron | 50.0% | |
| ATCTCCTCGCCTAAGCAACA+AGG | + | chr1.4:7857387-7857406 | None:intergenic | 50.0% | |
| ATTGCTGGATCTAGTGAGGG+TGG | - | chr1.4:7855315-7855334 | MS.gene51548:intron | 50.0% | |
| CATTGACAGGGGTCTTCGAT+TGG | + | chr1.4:7854241-7854260 | None:intergenic | 50.0% | |
| CCAGTCGTTGACATTGACAG+GGG | + | chr1.4:7854252-7854271 | None:intergenic | 50.0% | |
| CTGCGAACACCAGCAAATCA+AGG | - | chr1.4:7855061-7855080 | MS.gene51548:intron | 50.0% | |
| GAAGAACGTGCACAAGCTTG+CGG | - | chr1.4:7857447-7857466 | MS.gene51548:CDS | 50.0% | |
| GATCCTTCCGATGACAGTGT+CGG | + | chr1.4:7854062-7854081 | None:intergenic | 50.0% | |
| GCACAAGCTATTCGACCAGT+TGG | - | chr1.4:7854332-7854351 | MS.gene51548:CDS | 50.0% | |
| GCGGCAAATTTCACCATCTG+CGG | + | chr1.4:7854440-7854459 | None:intergenic | 50.0% | |
| GTACCCGTTTGAACCCCTAA+AGG | - | chr1.4:7855731-7855750 | MS.gene51548:intron | 50.0% | |
| GTCCAGTCGTTGACATTGAC+AGG | + | chr1.4:7854254-7854273 | None:intergenic | 50.0% | |
| TCAAGAGCCGACACTGTCAT+CGG | - | chr1.4:7854052-7854071 | MS.gene51548:CDS | 50.0% | |
| TCGACCAGTTGGGAAGAAGA+TGG | - | chr1.4:7854343-7854362 | MS.gene51548:CDS | 50.0% | |
| TCGATTGGAGCTCAATGAGC+GGG | + | chr1.4:7854226-7854245 | None:intergenic | 50.0% | |
| TGGTTTCACCGTACAGTGCT+TGG | - | chr1.4:7854388-7854407 | MS.gene51548:CDS | 50.0% | |
| TTGCGGTGTGATACGGTGTT+GGG | - | chr1.4:7855232-7855251 | MS.gene51548:intron | 50.0% | |
| TTTATCCACGTGACCCACTC+AGG | - | chr1.4:7857748-7857767 | MS.gene51548:CDS | 50.0% | |
| TTTGCGGTGTGATACGGTGT+TGG | - | chr1.4:7855231-7855250 | MS.gene51548:intron | 50.0% | |
| ! | AACAAGCCGGTTCTAATCCG+TGG | - | chr1.4:7854305-7854324 | MS.gene51548:intron | 50.0% |
| ! | ACAAGCCGGTTCTAATCCGT+GGG | - | chr1.4:7854306-7854325 | MS.gene51548:CDS | 50.0% |
| ! | CAATCCTTGTTGCTTAGGCG+AGG | - | chr1.4:7857380-7857399 | MS.gene51548:CDS | 50.0% |
| ! | TGCCTGAACCAAGCACTGTA+CGG | + | chr1.4:7854399-7854418 | None:intergenic | 50.0% |
| !! | AAAGGTGCCTCACAACAGGT+TGG | - | chr1.4:7854524-7854543 | MS.gene51548:intron | 50.0% |
| !! | CTTGATTTGCTGGTGTTCGC+AGG | + | chr1.4:7855063-7855082 | None:intergenic | 50.0% |
| !!! | GCGTTGCTTTTCCAGCTTTG+CGG | + | chr1.4:7854120-7854139 | None:intergenic | 50.0% |
| AGGGTGGAGCTGCTGTCTTT+AGG | - | chr1.4:7855331-7855350 | MS.gene51548:intron | 55.0% | |
| AGTCGATGTAGCAGAGGTGG+CGG | + | chr1.4:7854159-7854178 | None:intergenic | 55.0% | |
| CAAGAAGGATGCCGCAAAGC+TGG | - | chr1.4:7854106-7854125 | MS.gene51548:CDS | 55.0% | |
| CACCGTACAGTGCTTGGTTC+AGG | - | chr1.4:7854394-7854413 | MS.gene51548:CDS | 55.0% | |
| CCCCTGTCAATGTCAACGAC+TGG | - | chr1.4:7854249-7854268 | MS.gene51548:intron | 55.0% | |
| CTTTGCGGCATCCTTCTTGC+AGG | + | chr1.4:7854105-7854124 | None:intergenic | 55.0% | |
| GAAGTTGAGGTGACTGAGCC+AGG | + | chr1.4:7855383-7855402 | None:intergenic | 55.0% | |
| GAGAGTCGATGTAGCAGAGG+TGG | + | chr1.4:7854162-7854181 | None:intergenic | 55.0% | |
| GCACCTTTAATAGGAGCGGC+TGG | + | chr1.4:7854512-7854531 | None:intergenic | 55.0% | |
| GTCTTACAGCCAACGGGTAC+CGG | + | chr1.4:7857131-7857150 | None:intergenic | 55.0% | |
| TATCCTTCACCGGTACCCGT+TGG | - | chr1.4:7857119-7857138 | MS.gene51548:CDS | 55.0% | |
| TATGGTGTACCACCACACGG+TGG | - | chr1.4:7857657-7857676 | MS.gene51548:CDS | 55.0% | |
| TGCACAAGCTTGCGGCATTG+AGG | - | chr1.4:7857455-7857474 | MS.gene51548:CDS | 55.0% | |
| TGGAGCTGCTGTCTTTAGGC+TGG | - | chr1.4:7855335-7855354 | MS.gene51548:intron | 55.0% | |
| ! | GAATAGCTTGTGCCCTCCCA+CGG | + | chr1.4:7854325-7854344 | None:intergenic | 55.0% |
| ! | GGTGTGATACGGTGTTGGGT+AGG | - | chr1.4:7855236-7855255 | MS.gene51548:intron | 55.0% |
| ACTCCAAAGCCACCGTGTGG+TGG | + | chr1.4:7857669-7857688 | None:intergenic | 60.0% | |
| CAAAGGGCAACCTGCATGCC+TGG | - | chr1.4:7855362-7855381 | MS.gene51548:intron | 60.0% | |
| CAACGACTGGACCCGAGTTG+AGG | - | chr1.4:7854262-7854281 | MS.gene51548:intron | 60.0% | |
| CCTACTCCAAAGCCACCGTG+TGG | + | chr1.4:7857672-7857691 | None:intergenic | 60.0% | |
| CTGCCCCTCTTACTGAGCTC+TGG | - | chr1.4:7857570-7857589 | MS.gene51548:CDS | 60.0% | |
| GAGCCGACACTGTCATCGGA+AGG | - | chr1.4:7854056-7854075 | MS.gene51548:CDS | 60.0% | |
| GCAATCCTGAGTGGGTCACG+TGG | + | chr1.4:7857756-7857775 | None:intergenic | 60.0% | |
| GTACCACCACACGGTGGCTT+TGG | - | chr1.4:7857663-7857682 | MS.gene51548:CDS | 60.0% | |
| ! | AGCCGGTTCTAATCCGTGGG+AGG | - | chr1.4:7854309-7854328 | MS.gene51548:CDS | 60.0% |
| ! | GCCGGTTCTAATCCGTGGGA+GGG | - | chr1.4:7854310-7854329 | MS.gene51548:CDS | 60.0% |
| !! | CCACACGGTGGCTTTGGAGT+AGG | - | chr1.4:7857669-7857688 | MS.gene51548:CDS | 60.0% |
| !! | CGGTGGCTTTGGAGTAGGCT+TGG | - | chr1.4:7857674-7857693 | MS.gene51548:CDS | 60.0% |
| !! | GCCCTCCCACGGATTAGAAC+CGG | + | chr1.4:7854314-7854333 | None:intergenic | 60.0% |
| AGACTCACGGCTGAGAGCGG+CGG | + | chr1.4:7854459-7854478 | None:intergenic | 65.0% | |
| GGTGACTGAGCCAGGCATGC+AGG | + | chr1.4:7855375-7855394 | None:intergenic | 65.0% | |
| ! | AGGTGGCGGCGGCAACTTCT+CGG | + | chr1.4:7854145-7854164 | None:intergenic | 65.0% |
| ! | CGATGTAGCAGAGGTGGCGG+CGG | + | chr1.4:7854156-7854175 | None:intergenic | 65.0% |
| !! | CAGCCAACGGGTACCGGTGA+AGG | + | chr1.4:7857125-7857144 | None:intergenic | 65.0% |
| TGGCGGCGGCAACTTCTCGG+CGG | + | chr1.4:7854142-7854161 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 7854035 | 7857782 | 7854035 | ID=MS.gene51548 |
| chr1.4 | mRNA | 7854035 | 7857782 | 7854035 | ID=MS.gene51548.t1;Parent=MS.gene51548 |
| chr1.4 | exon | 7857276 | 7857782 | 7857276 | ID=MS.gene51548.t1.exon1;Parent=MS.gene51548.t1 |
| chr1.4 | CDS | 7857276 | 7857782 | 7857276 | ID=cds.MS.gene51548.t1;Parent=MS.gene51548.t1 |
| chr1.4 | exon | 7857035 | 7857145 | 7857035 | ID=MS.gene51548.t1.exon2;Parent=MS.gene51548.t1 |
| chr1.4 | CDS | 7857035 | 7857145 | 7857035 | ID=cds.MS.gene51548.t1;Parent=MS.gene51548.t1 |
| chr1.4 | exon | 7856703 | 7856816 | 7856703 | ID=MS.gene51548.t1.exon3;Parent=MS.gene51548.t1 |
| chr1.4 | CDS | 7856703 | 7856816 | 7856703 | ID=cds.MS.gene51548.t1;Parent=MS.gene51548.t1 |
| chr1.4 | exon | 7856269 | 7856559 | 7856269 | ID=MS.gene51548.t1.exon4;Parent=MS.gene51548.t1 |
| chr1.4 | CDS | 7856269 | 7856559 | 7856269 | ID=cds.MS.gene51548.t1;Parent=MS.gene51548.t1 |
| chr1.4 | exon | 7856065 | 7856175 | 7856065 | ID=MS.gene51548.t1.exon5;Parent=MS.gene51548.t1 |
| chr1.4 | CDS | 7856065 | 7856175 | 7856065 | ID=cds.MS.gene51548.t1;Parent=MS.gene51548.t1 |
| chr1.4 | exon | 7855842 | 7855895 | 7855842 | ID=MS.gene51548.t1.exon6;Parent=MS.gene51548.t1 |
| chr1.4 | CDS | 7855842 | 7855895 | 7855842 | ID=cds.MS.gene51548.t1;Parent=MS.gene51548.t1 |
| chr1.4 | exon | 7854814 | 7854893 | 7854814 | ID=MS.gene51548.t1.exon7;Parent=MS.gene51548.t1 |
| chr1.4 | CDS | 7854814 | 7854893 | 7854814 | ID=cds.MS.gene51548.t1;Parent=MS.gene51548.t1 |
| chr1.4 | exon | 7854601 | 7854716 | 7854601 | ID=MS.gene51548.t1.exon8;Parent=MS.gene51548.t1 |
| chr1.4 | CDS | 7854601 | 7854716 | 7854601 | ID=cds.MS.gene51548.t1;Parent=MS.gene51548.t1 |
| chr1.4 | exon | 7854306 | 7854420 | 7854306 | ID=MS.gene51548.t1.exon9;Parent=MS.gene51548.t1 |
| chr1.4 | CDS | 7854306 | 7854420 | 7854306 | ID=cds.MS.gene51548.t1;Parent=MS.gene51548.t1 |
| chr1.4 | exon | 7854035 | 7854161 | 7854035 | ID=MS.gene51548.t1.exon10;Parent=MS.gene51548.t1 |
| chr1.4 | CDS | 7854035 | 7854161 | 7854035 | ID=cds.MS.gene51548.t1;Parent=MS.gene51548.t1 |
| Gene Sequence |
| Protein sequence |
