Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33127.t1 | XP_003588866.1 | 93.5 | 541 | 35 | 0 | 1 | 541 | 1 | 541 | 8.20E-287 | 995.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33127.t1 | Q9M084 | 68.0 | 500 | 150 | 2 | 52 | 541 | 59 | 558 | 2.5e-199 | 696.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33127.t1 | G7I885 | 93.5 | 541 | 35 | 0 | 1 | 541 | 1 | 541 | 5.9e-287 | 995.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene33127 | -0.801718 | 7.89E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene33127 | -0.849027 | 4.21E-60 | -1.69E-46 |
| MS.gene049669 | MS.gene33127 | -0.807065 | 6.06E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene33127 | -0.846235 | 2.47E-59 | -1.69E-46 |
| MS.gene050227 | MS.gene33127 | -0.849014 | 4.24E-60 | -1.69E-46 |
| MS.gene050228 | MS.gene33127 | -0.84577 | 3.30E-59 | -1.69E-46 |
| MS.gene050330 | MS.gene33127 | 0.823675 | 1.22E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene33127 | -0.833088 | 6.52E-56 | -1.69E-46 |
| MS.gene050623 | MS.gene33127 | 0.817907 | 2.59E-52 | -1.69E-46 |
| MS.gene050680 | MS.gene33127 | -0.857302 | 1.79E-62 | -1.69E-46 |
| MS.gene050750 | MS.gene33127 | -0.858591 | 7.42E-63 | -1.69E-46 |
| MS.gene050820 | MS.gene33127 | -0.828582 | 8.30E-55 | -1.69E-46 |
| MS.gene050826 | MS.gene33127 | -0.807291 | 5.43E-50 | -1.69E-46 |
| MS.gene050953 | MS.gene33127 | -0.865404 | 6.05E-65 | -1.69E-46 |
| MS.gene05119 | MS.gene33127 | 0.815811 | 7.64E-52 | -1.69E-46 |
| MS.gene051265 | MS.gene33127 | -0.806544 | 7.81E-50 | -1.69E-46 |
| MS.gene051924 | MS.gene33127 | 0.839574 | 1.46E-57 | -1.69E-46 |
| MS.gene051926 | MS.gene33127 | 0.838127 | 3.46E-57 | -1.69E-46 |
| MS.gene051983 | MS.gene33127 | -0.810431 | 1.16E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene33127 | -0.835199 | 1.93E-56 | -1.69E-46 |
| MS.gene052190 | MS.gene33127 | -0.844824 | 5.95E-59 | -1.69E-46 |
| MS.gene052309 | MS.gene33127 | 0.819122 | 1.37E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene33127 | -0.841391 | 4.89E-58 | -1.69E-46 |
| MS.gene052358 | MS.gene33127 | 0.80793 | 3.97E-50 | -1.69E-46 |
| MS.gene052361 | MS.gene33127 | 0.811102 | 8.28E-51 | -1.69E-46 |
| MS.gene052389 | MS.gene33127 | -0.825056 | 5.77E-54 | -1.69E-46 |
| MS.gene052426 | MS.gene33127 | -0.805355 | 1.39E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene33127 | -0.818078 | 2.37E-52 | -1.69E-46 |
| MS.gene052965 | MS.gene33127 | 0.809565 | 1.78E-50 | -1.69E-46 |
| MS.gene053054 | MS.gene33127 | 0.827765 | 1.31E-54 | -1.69E-46 |
| MS.gene053166 | MS.gene33127 | -0.853895 | 1.77E-61 | -1.69E-46 |
| MS.gene053201 | MS.gene33127 | -0.801747 | 7.78E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene33127 | -0.802748 | 4.84E-49 | -1.69E-46 |
| MS.gene053584 | MS.gene33127 | -0.809315 | 2.01E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene33127 | -0.825655 | 4.16E-54 | -1.69E-46 |
| MS.gene054291 | MS.gene33127 | 0.856578 | 2.93E-62 | -1.69E-46 |
| MS.gene054379 | MS.gene33127 | -0.81173 | 6.05E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene33127 | -0.860215 | 2.41E-63 | -1.69E-46 |
| MS.gene054468 | MS.gene33127 | -0.831547 | 1.57E-55 | -1.69E-46 |
| MS.gene054559 | MS.gene33127 | -0.843576 | 1.29E-58 | -1.69E-46 |
| MS.gene054657 | MS.gene33127 | -0.825091 | 5.66E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene33127 | -0.825538 | 4.44E-54 | -1.69E-46 |
| MS.gene05510 | MS.gene33127 | -0.859583 | 3.74E-63 | -1.69E-46 |
| MS.gene055356 | MS.gene33127 | -0.82888 | 7.03E-55 | -1.69E-46 |
| MS.gene055358 | MS.gene33127 | -0.829749 | 4.32E-55 | -1.69E-46 |
| MS.gene055367 | MS.gene33127 | -0.826154 | 3.17E-54 | -1.69E-46 |
| MS.gene055701 | MS.gene33127 | -0.890315 | 1.10E-73 | -1.69E-46 |
| MS.gene055818 | MS.gene33127 | -0.844305 | 8.21E-59 | -1.69E-46 |
| MS.gene05595 | MS.gene33127 | -0.810476 | 1.13E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene33127 | -0.836826 | 7.45E-57 | -1.69E-46 |
| MS.gene056723 | MS.gene33127 | -0.803036 | 4.22E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene33127 | -0.805106 | 1.57E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene33127 | -0.836939 | 6.97E-57 | -1.69E-46 |
| MS.gene057060 | MS.gene33127 | -0.813209 | 2.87E-51 | -1.69E-46 |
| MS.gene057156 | MS.gene33127 | 0.843086 | 1.74E-58 | -1.69E-46 |
| MS.gene05761 | MS.gene33127 | -0.818457 | 1.94E-52 | -1.69E-46 |
| MS.gene057639 | MS.gene33127 | -0.821443 | 4.03E-53 | -1.69E-46 |
| MS.gene058139 | MS.gene33127 | -0.823774 | 1.16E-53 | -1.69E-46 |
| MS.gene058146 | MS.gene33127 | -0.821746 | 3.43E-53 | -1.69E-46 |
| MS.gene059128 | MS.gene33127 | -0.84069 | 7.47E-58 | -1.69E-46 |
| MS.gene059161 | MS.gene33127 | -0.857116 | 2.03E-62 | -1.69E-46 |
| MS.gene059382 | MS.gene33127 | -0.80127 | 9.74E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene33127 | -0.821313 | 4.31E-53 | -1.69E-46 |
| MS.gene059789 | MS.gene33127 | -0.814035 | 1.89E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene33127 | -0.822772 | 1.98E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene33127 | 0.842616 | 2.32E-58 | -1.69E-46 |
| MS.gene060322 | MS.gene33127 | -0.841497 | 4.58E-58 | -1.69E-46 |
| MS.gene060572 | MS.gene33127 | -0.826319 | 2.90E-54 | -1.69E-46 |
| MS.gene060634 | MS.gene33127 | 0.828438 | 8.99E-55 | -1.69E-46 |
| MS.gene060683 | MS.gene33127 | -0.817838 | 2.68E-52 | -1.69E-46 |
| MS.gene060685 | MS.gene33127 | -0.823401 | 1.41E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene33127 | -0.80719 | 5.71E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene33127 | -0.810274 | 1.25E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene33127 | -0.820006 | 8.61E-53 | -1.69E-46 |
| MS.gene060998 | MS.gene33127 | -0.810324 | 1.22E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene33127 | 0.838242 | 3.23E-57 | -1.69E-46 |
| MS.gene061114 | MS.gene33127 | 0.878587 | 2.49E-69 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33127.t1 | MTR_1g014140 | 98.152 | 541 | 10 | 0 | 1 | 541 | 1 | 541 | 0.0 | 1098 |
| MS.gene33127.t1 | MTR_5g028360 | 70.826 | 545 | 138 | 4 | 1 | 541 | 62 | 589 | 0.0 | 768 |
| MS.gene33127.t1 | MTR_4g100920 | 25.304 | 494 | 287 | 16 | 87 | 536 | 86 | 541 | 2.41e-31 | 128 |
| MS.gene33127.t1 | MTR_8g102050 | 30.961 | 281 | 174 | 8 | 271 | 538 | 275 | 548 | 2.79e-28 | 119 |
| MS.gene33127.t1 | MTR_7g101050 | 31.560 | 282 | 173 | 10 | 271 | 538 | 298 | 573 | 4.18e-27 | 115 |
| MS.gene33127.t1 | MTR_2g036600 | 23.673 | 490 | 325 | 15 | 83 | 533 | 109 | 588 | 2.78e-22 | 101 |
| MS.gene33127.t1 | MTR_4g127770 | 22.200 | 491 | 322 | 15 | 87 | 533 | 601 | 1075 | 1.14e-19 | 93.6 |
| MS.gene33127.t1 | MTR_8g007295 | 22.490 | 498 | 296 | 18 | 90 | 533 | 111 | 572 | 2.75e-15 | 79.3 |
| MS.gene33127.t1 | MTR_4g127790 | 22.969 | 357 | 239 | 10 | 209 | 532 | 32 | 385 | 1.26e-14 | 76.3 |
| MS.gene33127.t1 | MTR_8g011530 | 23.019 | 265 | 191 | 7 | 278 | 534 | 367 | 626 | 1.69e-11 | 67.4 |
| MS.gene33127.t1 | MTR_4g052070 | 27.953 | 254 | 150 | 9 | 92 | 333 | 72 | 304 | 2.30e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33127.t1 | AT4G31180 | 64.632 | 557 | 179 | 4 | 3 | 541 | 2 | 558 | 0.0 | 731 |
| MS.gene33127.t1 | AT4G31180 | 64.632 | 557 | 179 | 4 | 3 | 541 | 2 | 558 | 0.0 | 731 |
| MS.gene33127.t1 | AT4G26870 | 65.631 | 515 | 171 | 4 | 28 | 541 | 23 | 532 | 0.0 | 691 |
| MS.gene33127.t1 | AT5G56680 | 30.882 | 272 | 168 | 8 | 278 | 536 | 303 | 567 | 1.85e-29 | 122 |
| MS.gene33127.t1 | AT4G17300 | 25.536 | 466 | 252 | 15 | 122 | 536 | 161 | 582 | 8.25e-28 | 117 |
| MS.gene33127.t1 | AT4G17300 | 25.536 | 466 | 252 | 15 | 122 | 536 | 141 | 562 | 1.06e-27 | 117 |
| MS.gene33127.t1 | AT1G70980 | 28.929 | 280 | 179 | 7 | 271 | 536 | 293 | 566 | 2.39e-25 | 110 |
Find 137 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTACATCGATTCTTTC+AGG | 0.151574 | 1.1:-7586072 | MS.gene33127:intron |
| ATTCCAGCCGCTCCTATTAA+AGG | 0.200895 | 1.1:-7588869 | MS.gene33127:CDS |
| CAAACAAATTAACACCTTTA+GGG | 0.270476 | 1.1:+7587630 | None:intergenic |
| CTTTGCGGCATCCTTCTTGC+AGG | 0.276045 | 1.1:+7589273 | None:intergenic |
| ATGTCAATATGTGGTGATTT+TGG | 0.279212 | 1.1:-7587964 | MS.gene33127:CDS |
| TTCTTAGTCATCAGAGAAAA+TGG | 0.279492 | 1.1:-7589007 | MS.gene33127:CDS |
| TCAAAAGAGTTACTGTAGTT+TGG | 0.284688 | 1.1:+7586382 | None:intergenic |
| GATCCCCTTGCTGTCAATTA+TGG | 0.290000 | 1.1:-7589181 | MS.gene33127:CDS |
| TATGTAAGCCGCAGAGTATT+TGG | 0.299031 | 1.1:+7587447 | None:intergenic |
| TGAAATTGAGAAGGCCATTC+AGG | 0.299926 | 1.1:-7588614 | MS.gene33127:intron |
| TGTTGTGAGGCACCTTTAAT+AGG | 0.308209 | 1.1:+7588857 | None:intergenic |
| TGGAAAATTCCTTGATTTGC+TGG | 0.311128 | 1.1:+7588305 | None:intergenic |
| AGGCATCTGTGCGAGTTTAC+AGG | 0.319353 | 1.1:-7587889 | MS.gene33127:CDS |
| CAAAAGAGTTACTGTAGTTT+GGG | 0.335107 | 1.1:+7586383 | None:intergenic |
| CACCGTACAGTGCTTGGTTC+AGG | 0.346864 | 1.1:-7588981 | MS.gene33127:CDS |
| CACAATACAGTTTCCTCACT+TGG | 0.354867 | 1.1:+7588695 | None:intergenic |
| CAGAAGATTCCTTTACTCAT+AGG | 0.359787 | 1.1:-7587909 | MS.gene33127:CDS |
| CACACTCCTAAGTTGATTGC+TGG | 0.375345 | 1.1:-7588075 | MS.gene33127:CDS |
| GTCCAGTCGTTGACATTGAC+AGG | 0.393463 | 1.1:+7589124 | None:intergenic |
| TAGCAAGGCATTGTATAAAA+TGG | 0.394303 | 1.1:+7586412 | None:intergenic |
| AGGTGGCGGCGGCAACTTCT+CGG | 0.397158 | 1.1:+7589233 | None:intergenic |
| GTACCACCACACGGTGGCTT+TGG | 0.402704 | 1.1:-7585899 | MS.gene33127:CDS |
| ACAACTTGTTCGTGTGAATC+AGG | 0.411639 | 1.1:-7588366 | MS.gene33127:CDS |
| CAAGAAGGATGCCGCAAAGC+TGG | 0.416596 | 1.1:-7589269 | MS.gene33127:CDS |
| CAAAGGGCAACCTGCATGCC+TGG | 0.419819 | 1.1:-7588013 | MS.gene33127:CDS |
| TACAGGTCTTGATGTTGAAA+TGG | 0.423398 | 1.1:-7587872 | MS.gene33127:CDS |
| AGGGTGGAGCTGCTGTCTTT+AGG | 0.428133 | 1.1:-7588044 | MS.gene33127:CDS |
| GGAGTAGAGATTGAACCTTT+TGG | 0.442706 | 1.1:-7586632 | MS.gene33127:CDS |
| CATTGACAGGGGTCTTCGAT+TGG | 0.443151 | 1.1:+7589137 | None:intergenic |
| AACACCTTTAGGGGTTCAAA+CGG | 0.444877 | 1.1:+7587640 | None:intergenic |
| ATCTGCGGACTCACTAAATC+AGG | 0.450583 | 1.1:+7588953 | None:intergenic |
| CTTGATTTGCTGGTGTTCGC+AGG | 0.452358 | 1.1:+7588315 | None:intergenic |
| AACGCCATCTTCTTCCCAAC+TGG | 0.452718 | 1.1:+7589028 | None:intergenic |
| GCCCTCCCACGGATTAGAAC+CGG | 0.456675 | 1.1:+7589064 | None:intergenic |
| GCAGCATCCTCGATATTAAT+CGG | 0.461821 | 1.1:+7588649 | None:intergenic |
| TGGAGCTGCTGTCTTTAGGC+TGG | 0.464922 | 1.1:-7588040 | MS.gene33127:CDS |
| GATTAAGAAACATTATTATG+AGG | 0.466183 | 1.1:-7587848 | MS.gene33127:intron |
| TTACATTTCCAACTTGAGAC+TGG | 0.472065 | 1.1:+7588279 | None:intergenic |
| TATTAAAGGTGCCTCACAAC+AGG | 0.473545 | 1.1:-7588855 | MS.gene33127:intron |
| CGGTGGCTTTGGAGTAGGCT+TGG | 0.490259 | 1.1:-7585888 | MS.gene33127:CDS |
| TTAGGCGAGGAGATAATATC+AGG | 0.491304 | 1.1:-7586169 | MS.gene33127:intron |
| TGAGGCTCTCAATGATTCAC+TGG | 0.499024 | 1.1:-7589095 | MS.gene33127:CDS |
| TGGTTTCACCGTACAGTGCT+TGG | 0.499781 | 1.1:-7588987 | MS.gene33127:CDS |
| AAAATGGTCTTACAGCCAAC+GGG | 0.502027 | 1.1:+7586428 | None:intergenic |
| GTCTTACAGCCAACGGGTAC+CGG | 0.506627 | 1.1:+7586434 | None:intergenic |
| TCAGTATTCAAGTCACCAAA+AGG | 0.506705 | 1.1:+7586617 | None:intergenic |
| CTAGATCCAGCAATCAACTT+AGG | 0.510006 | 1.1:+7588069 | None:intergenic |
| TTTAATAGGAGCGGCTGGAA+TGG | 0.513685 | 1.1:+7588871 | None:intergenic |
| GAGTCTATTGTCGATGTCGA+AGG | 0.513770 | 1.1:-7588902 | MS.gene33127:CDS |
| GCACCTTTAATAGGAGCGGC+TGG | 0.516328 | 1.1:+7588866 | None:intergenic |
| CACAAGCTATTCGACCAGTT+GGG | 0.517268 | 1.1:-7589042 | MS.gene33127:CDS |
| GCACAAGCTATTCGACCAGT+TGG | 0.517849 | 1.1:-7589043 | MS.gene33127:CDS |
| ACACCTTTAGGGGTTCAAAC+GGG | 0.524064 | 1.1:+7587641 | None:intergenic |
| CAGCCAACGGGTACCGGTGA+AGG | 0.524085 | 1.1:+7586440 | None:intergenic |
| CTGCGGCTTACATATGAAGA+AGG | 0.526092 | 1.1:-7587438 | MS.gene33127:CDS |
| TTCCAACTTGAGACTGGATG+TGG | 0.528293 | 1.1:+7588285 | None:intergenic |
| AATGAATATATATACCTGAA+TGG | 0.529761 | 1.1:+7588600 | None:intergenic |
| GAAACTGTATTGTGTGAGTA+AGG | 0.532678 | 1.1:-7588686 | MS.gene33127:CDS |
| AAACAAATTAACACCTTTAG+GGG | 0.533347 | 1.1:+7587631 | None:intergenic |
| GAATAGCTTGTGCCCTCCCA+CGG | 0.535699 | 1.1:+7589053 | None:intergenic |
| CTGCGAACACCAGCAAATCA+AGG | 0.537117 | 1.1:-7588314 | MS.gene33127:CDS |
| TTCCACATCCAGTCTCAAGT+TGG | 0.538148 | 1.1:-7588287 | MS.gene33127:CDS |
| GAAGTTGAGGTGACTGAGCC+AGG | 0.538658 | 1.1:+7587995 | None:intergenic |
| AGAAAGGAAACTAGGCCAGC+TGG | 0.539715 | 1.1:-7586591 | MS.gene33127:CDS |
| TCTTTAGGCTGGACTACAAA+GGG | 0.542694 | 1.1:-7588029 | MS.gene33127:CDS |
| CGATGTAGCAGAGGTGGCGG+CGG | 0.543849 | 1.1:+7589222 | None:intergenic |
| CCACACGGTGGCTTTGGAGT+AGG | 0.547341 | 1.1:-7585893 | MS.gene33127:CDS |
| AACAAGCCGGTTCTAATCCG+TGG | 0.547533 | 1.1:-7589070 | MS.gene33127:CDS |
| TTTGAACACAAAATGTAAGA+AGG | 0.547679 | 1.1:-7587689 | MS.gene33127:CDS |
| CCCCTGTCAATGTCAACGAC+TGG | 0.551263 | 1.1:-7589126 | MS.gene33127:CDS |
| TAAAATGGTCTTACAGCCAA+CGG | 0.552316 | 1.1:+7586427 | None:intergenic |
| TCGATATTAATCGGCAGAGT+AGG | 0.553228 | 1.1:+7588658 | None:intergenic |
| GGTGACTGAGCCAGGCATGC+AGG | 0.555621 | 1.1:+7588003 | None:intergenic |
| TCGATTGGAGCTCAATGAGC+GGG | 0.557785 | 1.1:+7589152 | None:intergenic |
| GACATTTGCTTGTGAAGTTG+AGG | 0.558674 | 1.1:+7587982 | None:intergenic |
| GCACAGATGCCTATGAGTAA+AGG | 0.560403 | 1.1:+7587900 | None:intergenic |
| CACAAGCAAATGTCAATATG+TGG | 0.561198 | 1.1:-7587973 | MS.gene33127:CDS |
| AGTCGATGTAGCAGAGGTGG+CGG | 0.572655 | 1.1:+7589219 | None:intergenic |
| CAGAGTTCTATATCCTTCAC+CGG | 0.573477 | 1.1:-7586453 | MS.gene33127:CDS |
| ATTAATCGGCAGAGTAGGAA+TGG | 0.575600 | 1.1:+7588663 | None:intergenic |
| TAGTTTGGGTTGTCATAGCA+AGG | 0.575643 | 1.1:+7586397 | None:intergenic |
| GAAGAACGTGCACAAGCTTG+CGG | 0.577219 | 1.1:-7586115 | MS.gene33127:CDS |
| TTTATCCACGTGACCCACTC+AGG | 0.577438 | 1.1:-7585814 | MS.gene33127:CDS |
| GTCTTTAGGCTGGACTACAA+AGG | 0.579932 | 1.1:-7588030 | MS.gene33127:CDS |
| TCGACCAGTTGGGAAGAAGA+TGG | 0.581394 | 1.1:-7589032 | MS.gene33127:CDS |
| AGACTCACGGCTGAGAGCGG+CGG | 0.581736 | 1.1:+7588919 | None:intergenic |
| TGCACAAGCTTGCGGCATTG+AGG | 0.583418 | 1.1:-7586107 | MS.gene33127:CDS |
| AATCATTGAGAGCCTCAACT+CGG | 0.583678 | 1.1:+7589101 | None:intergenic |
| ACTGAAGCAGAAAGGAAACT+AGG | 0.584857 | 1.1:-7586599 | MS.gene33127:CDS |
| GAGAGTCGATGTAGCAGAGG+TGG | 0.585897 | 1.1:+7589216 | None:intergenic |
| TACTCTGCCGATTAATATCG+AGG | 0.589627 | 1.1:-7588656 | MS.gene33127:CDS |
| TCCAGTCGTTGACATTGACA+GGG | 0.592334 | 1.1:+7589125 | None:intergenic |
| AGAGAGAGTCGATGTAGCAG+AGG | 0.593608 | 1.1:+7589213 | None:intergenic |
| ACTTGAATACTGAAGCAGAA+AGG | 0.595013 | 1.1:-7586607 | MS.gene33127:CDS |
| TGATTTAGTGAGTCCGCAGA+TGG | 0.596877 | 1.1:-7588951 | MS.gene33127:CDS |
| GTACCCGTTTGAACCCCTAA+AGG | 0.597654 | 1.1:-7587644 | MS.gene33127:intron |
| ATCATTGAGAGCCTCAACTC+GGG | 0.599803 | 1.1:+7589102 | None:intergenic |
| CAACGACTGGACCCGAGTTG+AGG | 0.600329 | 1.1:-7589113 | MS.gene33127:CDS |
| TCAAGAGCCGACACTGTCAT+CGG | 0.603493 | 1.1:-7589323 | MS.gene33127:CDS |
| GATCCTTCCGATGACAGTGT+CGG | 0.605021 | 1.1:+7589316 | None:intergenic |
| TGAGGCACCTTTAATAGGAG+CGG | 0.608618 | 1.1:+7588862 | None:intergenic |
| TATCCTTCACCGGTACCCGT+TGG | 0.609544 | 1.1:-7586443 | MS.gene33127:CDS |
| GCCGGTTCTAATCCGTGGGA+GGG | 0.610769 | 1.1:-7589065 | MS.gene33127:CDS |
| TTCGATTGGAGCTCAATGAG+CGG | 0.611035 | 1.1:+7589151 | None:intergenic |
| CAGCAATCAACTTAGGAGTG+TGG | 0.611888 | 1.1:+7588076 | None:intergenic |
| TGATTCACTGGAGAACAAGC+CGG | 0.613416 | 1.1:-7589083 | MS.gene33127:CDS |
| GCGGCAAATTTCACCATCTG+CGG | 0.614321 | 1.1:+7588938 | None:intergenic |
| ATTGCTGGATCTAGTGAGGG+TGG | 0.614640 | 1.1:-7588060 | MS.gene33127:CDS |
| ATACCATAATTGACAGCAAG+GGG | 0.614733 | 1.1:+7589178 | None:intergenic |
| ACAAGCCGGTTCTAATCCGT+GGG | 0.615482 | 1.1:-7589069 | MS.gene33127:CDS |
| TATTGTCGATGTCGAAGGTG+TGG | 0.616371 | 1.1:-7588897 | MS.gene33127:CDS |
| ATCATGGTGCAATCCTGAGT+GGG | 0.620490 | 1.1:+7585801 | None:intergenic |
| AATAGACTCACGGCTGAGAG+CGG | 0.623488 | 1.1:+7588916 | None:intergenic |
| AGCCGGTTCTAATCCGTGGG+AGG | 0.623958 | 1.1:-7589066 | MS.gene33127:CDS |
| AAGTGAAGTTGAAATTGAGA+AGG | 0.624126 | 1.1:-7588623 | MS.gene33127:CDS |
| GAGCCGACACTGTCATCGGA+AGG | 0.625324 | 1.1:-7589319 | MS.gene33127:CDS |
| TAAGAAGGATCTCGAAGCTG+TGG | 0.629352 | 1.1:-7587674 | MS.gene33127:CDS |
| GTTGATTGCTGGATCTAGTG+AGG | 0.632210 | 1.1:-7588064 | MS.gene33127:CDS |
| CAATACCATAATTGACAGCA+AGG | 0.634292 | 1.1:+7589176 | None:intergenic |
| CGTGTAGTAATGCTCTTCTG+TGG | 0.635161 | 1.1:-7585863 | MS.gene33127:CDS |
| TGCCTGAACCAAGCACTGTA+CGG | 0.635520 | 1.1:+7588979 | None:intergenic |
| ATCATAACCAACCTGTTGTG+AGG | 0.639858 | 1.1:+7588844 | None:intergenic |
| AGAAGGTATTCAGATGCTCA+AGG | 0.641602 | 1.1:-7587421 | MS.gene33127:intron |
| TTGATTGCTGGATCTAGTGA+GGG | 0.644845 | 1.1:-7588063 | MS.gene33127:CDS |
| ACTCCAAAGCCACCGTGTGG+TGG | 0.646949 | 1.1:+7585896 | None:intergenic |
| CATCATGGTGCAATCCTGAG+TGG | 0.650761 | 1.1:+7585800 | None:intergenic |
| CGACATCGACAATAGACTCA+CGG | 0.651944 | 1.1:+7588906 | None:intergenic |
| GAATCTTCTGCTCTAAACAC+AGG | 0.652142 | 1.1:+7587922 | None:intergenic |
| AGATATGGTGTACCACCACA+CGG | 0.671410 | 1.1:-7585908 | MS.gene33127:CDS |
| TATAGGTTGAAATCCAAGTG+AGG | 0.674003 | 1.1:-7588708 | MS.gene33127:intron |
| GCAATCCTGAGTGGGTCACG+TGG | 0.689157 | 1.1:+7585809 | None:intergenic |
| AATACCATAATTGACAGCAA+GGG | 0.690003 | 1.1:+7589177 | None:intergenic |
| TGGCGGCGGCAACTTCTCGG+CGG | 0.706873 | 1.1:+7589236 | None:intergenic |
| CCTACTCCAAAGCCACCGTG+TGG | 0.729566 | 1.1:+7585893 | None:intergenic |
| CCAGTCGTTGACATTGACAG+GGG | 0.731951 | 1.1:+7589126 | None:intergenic |
| AGTATCTTCCAAATACTCTG+CGG | 0.740430 | 1.1:-7587455 | MS.gene33127:CDS |
| TATGGTGTACCACCACACGG+TGG | 0.820152 | 1.1:-7585905 | MS.gene33127:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATAATATTAGAGAAAAT+AGG | + | chr1.1:7586891-7586910 | None:intergenic | 15.0% |
| !! | ATTATATAAATGTCATTGAA+AGG | - | chr1.1:7588003-7588022 | MS.gene33127:CDS | 15.0% |
| !! | TAACTATGATATATATAAGA+TGG | - | chr1.1:7588415-7588434 | MS.gene33127:intron | 15.0% |
| !! | TTTCAATTTAATTCAAGAAA+AGG | - | chr1.1:7588226-7588245 | MS.gene33127:intron | 15.0% |
| !! | TTTCTTGAATTAAATTGAAA+AGG | + | chr1.1:7588226-7588245 | None:intergenic | 15.0% |
| !!! | GATTTTGATTTTGATTATAA+TGG | - | chr1.1:7586391-7586410 | MS.gene33127:CDS | 15.0% |
| !!! | TCTGGTTATAATAATTTTAT+GGG | - | chr1.1:7589168-7589187 | MS.gene33127:CDS | 15.0% |
| !! | AAATTGATGAAAATGTACTT+GGG | - | chr1.1:7588045-7588064 | MS.gene33127:CDS | 20.0% |
| !! | AACCAAATAATTGTTACTAT+TGG | - | chr1.1:7588196-7588215 | MS.gene33127:intron | 20.0% |
| !! | AATAGTAACAATTATTTGGT+TGG | + | chr1.1:7588197-7588216 | None:intergenic | 20.0% |
| !! | AATGAATATATATACCTGAA+TGG | + | chr1.1:7586545-7586564 | None:intergenic | 20.0% |
| !! | ACCAAATAATTGTTACTATT+GGG | - | chr1.1:7588197-7588216 | MS.gene33127:intron | 20.0% |
| !! | GATTAAGAAACATTATTATG+AGG | - | chr1.1:7587294-7587313 | MS.gene33127:intron | 20.0% |
| !! | TAAATTGATGAAAATGTACT+TGG | - | chr1.1:7588044-7588063 | MS.gene33127:CDS | 20.0% |
| !! | TCAATTACAACATTTCTAAT+CGG | + | chr1.1:7586569-7586588 | None:intergenic | 20.0% |
| !! | TCAATTTATTTGTTTGTAGT+GGG | - | chr1.1:7587572-7587591 | MS.gene33127:intron | 20.0% |
| !! | TGTAATTCTATTTATAGGTA+TGG | - | chr1.1:7588664-7588683 | MS.gene33127:CDS | 20.0% |
| !! | TTCAATTTATTTGTTTGTAG+TGG | - | chr1.1:7587571-7587590 | MS.gene33127:intron | 20.0% |
| !!! | CATTTCTTAAGTTAGTTTAT+CGG | + | chr1.1:7586975-7586994 | None:intergenic | 20.0% |
| !!! | CTCTGGTTATAATAATTTTA+TGG | - | chr1.1:7589167-7589186 | MS.gene33127:CDS | 20.0% |
| !!! | CTGGTTATAATAATTTTATG+GGG | - | chr1.1:7589169-7589188 | MS.gene33127:CDS | 20.0% |
| !!! | TCAATTTTACAAAATAGACA+GGG | + | chr1.1:7587848-7587867 | None:intergenic | 20.0% |
| !!! | TGTCTATTTTGTAAAATTGA+GGG | - | chr1.1:7587848-7587867 | MS.gene33127:intron | 20.0% |
| !!! | TGTTGTTTTGTTTAATATAC+TGG | - | chr1.1:7586695-7586714 | MS.gene33127:intron | 20.0% |
| ! | AAACAAATTAACACCTTTAG+GGG | + | chr1.1:7587514-7587533 | None:intergenic | 25.0% |
| ! | ACATTATTATGAGGTACATT+TGG | - | chr1.1:7587303-7587322 | MS.gene33127:intron | 25.0% |
| ! | AGGACATATAGTTATTTGAT+TGG | - | chr1.1:7588246-7588265 | MS.gene33127:intron | 25.0% |
| ! | ATCAGAAACAAAAAGCAAAA+AGG | - | chr1.1:7585846-7585865 | MS.gene33127:CDS | 25.0% |
| ! | CAAACAAATTAACACCTTTA+GGG | + | chr1.1:7587515-7587534 | None:intergenic | 25.0% |
| ! | CCAAATAATTGTTACTATTG+GGG | - | chr1.1:7588198-7588217 | MS.gene33127:intron | 25.0% |
| ! | GATAAACAAACAAATGTGAT+AGG | - | chr1.1:7587785-7587804 | MS.gene33127:intron | 25.0% |
| ! | GTTCAATGTCTTTGTTAATA+CGG | - | chr1.1:7589118-7589137 | MS.gene33127:CDS | 25.0% |
| ! | TATAAGATTAAACTGTACAC+AGG | + | chr1.1:7587903-7587922 | None:intergenic | 25.0% |
| ! | TCGACTGTAATTCTATTTAT+AGG | - | chr1.1:7588659-7588678 | MS.gene33127:CDS | 25.0% |
| ! | TGATTGATCATTTACAGATA+TGG | - | chr1.1:7589219-7589238 | MS.gene33127:CDS | 25.0% |
| ! | TTCAATGTCTTTGTTAATAC+GGG | - | chr1.1:7589119-7589138 | MS.gene33127:CDS | 25.0% |
| ! | TTTAAACTTCACTACAAGAT+TGG | + | chr1.1:7587953-7587972 | None:intergenic | 25.0% |
| ! | TTTAGTCATTTCATTGATGA+TGG | - | chr1.1:7588124-7588143 | MS.gene33127:intron | 25.0% |
| ! | TTTGAACACAAAATGTAAGA+AGG | - | chr1.1:7587453-7587472 | MS.gene33127:CDS | 25.0% |
| !! | AACTTAAGAAATGCATTTTG+CGG | - | chr1.1:7586982-7587001 | MS.gene33127:intron | 25.0% |
| !! | AATGCTTTGTTATGACAATT+TGG | - | chr1.1:7588829-7588848 | MS.gene33127:intron | 25.0% |
| !! | ACTGATACTTTTGTGTTTTT+TGG | - | chr1.1:7587383-7587402 | MS.gene33127:intron | 25.0% |
| !! | AGTTATAAAAGATTTGAGAC+AGG | + | chr1.1:7588594-7588613 | None:intergenic | 25.0% |
| !! | CTAAATGAGATCTCATTTTA+TGG | + | chr1.1:7588109-7588128 | None:intergenic | 25.0% |
| !! | CTCAATTTTACAAAATAGAC+AGG | + | chr1.1:7587849-7587868 | None:intergenic | 25.0% |
| !! | CTGTCTATTTTGTAAAATTG+AGG | - | chr1.1:7587847-7587866 | MS.gene33127:intron | 25.0% |
| !! | GTCTATTTTGTAAAATTGAG+GGG | - | chr1.1:7587849-7587868 | MS.gene33127:CDS | 25.0% |
| !! | GTTATAAAAGATTTGAGACA+GGG | + | chr1.1:7588593-7588612 | None:intergenic | 25.0% |
| !! | GTTATGATATCTTGTTACTT+AGG | - | chr1.1:7586313-7586332 | MS.gene33127:intron | 25.0% |
| !! | TGGAATTTTCAAAAATTGGA+GGG | + | chr1.1:7588177-7588196 | None:intergenic | 25.0% |
| !! | TGGTTGGAATTTTCAAAAAT+TGG | + | chr1.1:7588181-7588200 | None:intergenic | 25.0% |
| !! | TTGGAATTTTCAAAAATTGG+AGG | + | chr1.1:7588178-7588197 | None:intergenic | 25.0% |
| !!! | CTAAAGGTGTTAATTTGTTT+GGG | - | chr1.1:7587514-7587533 | MS.gene33127:intron | 25.0% |
| !!! | GTTGATGGTGATTTTTTAAT+TGG | - | chr1.1:7586740-7586759 | MS.gene33127:intron | 25.0% |
| !!! | TGATCAATCATTTAGTTTTC+TGG | + | chr1.1:7589209-7589228 | None:intergenic | 25.0% |
| !!! | TTGATTATAATGGTGTTATG+TGG | - | chr1.1:7586401-7586420 | MS.gene33127:CDS | 25.0% |
| AAGTGAAGTTGAAATTGAGA+AGG | - | chr1.1:7586519-7586538 | MS.gene33127:intron | 30.0% | |
| AATACCATAATTGACAGCAA+GGG | + | chr1.1:7585968-7585987 | None:intergenic | 30.0% | |
| ACACACATCTTTAATCAGAA+AGG | + | chr1.1:7586671-7586690 | None:intergenic | 30.0% | |
| CAAAAGAGTTACTGTAGTTT+GGG | + | chr1.1:7588762-7588781 | None:intergenic | 30.0% | |
| CAAGTTAGTGACACTTATTT+AGG | - | chr1.1:7588273-7588292 | MS.gene33127:intron | 30.0% | |
| CCAAACAAATTAACACCTTT+AGG | + | chr1.1:7587516-7587535 | None:intergenic | 30.0% | |
| CCCCAATAGTAACAATTATT+TGG | + | chr1.1:7588201-7588220 | None:intergenic | 30.0% | |
| TCAAAAGAGTTACTGTAGTT+TGG | + | chr1.1:7588763-7588782 | None:intergenic | 30.0% | |
| TTCTTAGTCATCAGAGAAAA+TGG | - | chr1.1:7586135-7586154 | MS.gene33127:CDS | 30.0% | |
| TTTACATCAAGACTCAGAAA+AGG | - | chr1.1:7588379-7588398 | MS.gene33127:intron | 30.0% | |
| TTTGTGAGTTGTGATTGTTT+AGG | - | chr1.1:7586369-7586388 | MS.gene33127:CDS | 30.0% | |
| ! | ATGTCAATATGTGGTGATTT+TGG | - | chr1.1:7587178-7587197 | MS.gene33127:intron | 30.0% |
| ! | TATGGAAGTACAAACACATT+TGG | + | chr1.1:7588898-7588917 | None:intergenic | 30.0% |
| ! | TATTTTGTAAAATTGAGGGG+TGG | - | chr1.1:7587852-7587871 | MS.gene33127:CDS | 30.0% |
| ! | TCTTAAGTTAGTTTATCGGT+AGG | + | chr1.1:7586971-7586990 | None:intergenic | 30.0% |
| !! | ATACTTTTGTGTTTTTTGGC+AGG | - | chr1.1:7587387-7587406 | MS.gene33127:intron | 30.0% |
| !! | CCTAAAGGTGTTAATTTGTT+TGG | - | chr1.1:7587513-7587532 | MS.gene33127:intron | 30.0% |
| !! | TAGCAAGGCATTGTATAAAA+TGG | + | chr1.1:7588733-7588752 | None:intergenic | 30.0% |
| !! | TTCATTGATGATGGTAGTTT+GGG | - | chr1.1:7588133-7588152 | MS.gene33127:intron | 30.0% |
| !! | TTTCATTGATGATGGTAGTT+TGG | - | chr1.1:7588132-7588151 | MS.gene33127:intron | 30.0% |
| !! | TTTCCTCTTGTAGTTAGTTT+TGG | - | chr1.1:7588330-7588349 | MS.gene33127:CDS | 30.0% |
| !!! | ATTACTTTTCTAAAACCAGC+TGG | + | chr1.1:7588569-7588588 | None:intergenic | 30.0% |
| !!! | TATGTGGTTTTGTTCTCTAT+AGG | - | chr1.1:7586417-7586436 | MS.gene33127:CDS | 30.0% |
| !!! | TTCCTCTTGTAGTTAGTTTT+GGG | - | chr1.1:7588331-7588350 | MS.gene33127:CDS | 30.0% |
| AACTATTGTTGAGGAATTCC+TGG | - | chr1.1:7588301-7588320 | MS.gene33127:CDS | 35.0% | |
| ACAAAGACATTGAACACGAT+AGG | + | chr1.1:7589113-7589132 | None:intergenic | 35.0% | |
| ACTATTGTTGAGGAATTCCT+GGG | - | chr1.1:7588302-7588321 | MS.gene33127:CDS | 35.0% | |
| ACTTGAATACTGAAGCAGAA+AGG | - | chr1.1:7588535-7588554 | MS.gene33127:intron | 35.0% | |
| AGTATCTTCCAAATACTCTG+CGG | - | chr1.1:7587687-7587706 | MS.gene33127:CDS | 35.0% | |
| ATACCATAATTGACAGCAAG+GGG | + | chr1.1:7585967-7585986 | None:intergenic | 35.0% | |
| CAAATGTGATAGGATGATGA+TGG | - | chr1.1:7587795-7587814 | MS.gene33127:intron | 35.0% | |
| CAATACCATAATTGACAGCA+AGG | + | chr1.1:7585969-7585988 | None:intergenic | 35.0% | |
| CACAAGCAAATGTCAATATG+TGG | - | chr1.1:7587169-7587188 | MS.gene33127:intron | 35.0% | |
| CACCATCAACATTCATGTAA+GGG | + | chr1.1:7586730-7586749 | None:intergenic | 35.0% | |
| CAGAAGATTCCTTTACTCAT+AGG | - | chr1.1:7587233-7587252 | MS.gene33127:intron | 35.0% | |
| CTTTGTTAATACGGGTGTTT+AGG | - | chr1.1:7589127-7589146 | MS.gene33127:CDS | 35.0% | |
| GAAACTGTATTGTGTGAGTA+AGG | - | chr1.1:7586456-7586475 | MS.gene33127:CDS | 35.0% | |
| GAAGATACTGCACATTCATA+GGG | + | chr1.1:7587676-7587695 | None:intergenic | 35.0% | |
| GGAATTCCTCAACAATAGTT+AGG | + | chr1.1:7588301-7588320 | None:intergenic | 35.0% | |
| TACAGGTCTTGATGTTGAAA+TGG | - | chr1.1:7587270-7587289 | MS.gene33127:intron | 35.0% | |
| TAGGTTCCTAACTATTGTTG+AGG | - | chr1.1:7588292-7588311 | MS.gene33127:CDS | 35.0% | |
| TCACCATCAACATTCATGTA+AGG | + | chr1.1:7586731-7586750 | None:intergenic | 35.0% | |
| TCAGTATTCAAGTCACCAAA+AGG | + | chr1.1:7588528-7588547 | None:intergenic | 35.0% | |
| TTACATTTCCAACTTGAGAC+TGG | + | chr1.1:7586866-7586885 | None:intergenic | 35.0% | |
| ! | CCATAAAAGCTGAAGCTTTT+GGG | - | chr1.1:7588913-7588932 | MS.gene33127:CDS | 35.0% |
| ! | CTATTCAATCCTTGTTGCTT+AGG | - | chr1.1:7588955-7588974 | MS.gene33127:CDS | 35.0% |
| ! | GAGTAATGATTTTGCTTTGC+AGG | - | chr1.1:7588482-7588501 | MS.gene33127:intron | 35.0% |
| ! | GCACGCAATTAATCATGTTT+TGG | - | chr1.1:7588853-7588872 | MS.gene33127:intron | 35.0% |
| ! | TAAAATGGTCTTACAGCCAA+CGG | + | chr1.1:7588718-7588737 | None:intergenic | 35.0% |
| ! | TATAGGTTGAAATCCAAGTG+AGG | - | chr1.1:7586434-7586453 | MS.gene33127:CDS | 35.0% |
| ! | TATCCACATGCCTGAATTTT+TGG | - | chr1.1:7589005-7589024 | MS.gene33127:CDS | 35.0% |
| ! | TCCATAAAAGCTGAAGCTTT+TGG | - | chr1.1:7588912-7588931 | MS.gene33127:CDS | 35.0% |
| ! | TCTTTTGATGTCTTCATTCG+AGG | - | chr1.1:7588775-7588794 | MS.gene33127:intron | 35.0% |
| ! | TGGAAGTTTAAGCACTGTTA+GGG | - | chr1.1:7587872-7587891 | MS.gene33127:CDS | 35.0% |
| ! | TTTGCGTTTGAAATTGTCGA+GGG | - | chr1.1:7587346-7587365 | MS.gene33127:intron | 35.0% |
| !! | TCATTGATGATGGTAGTTTG+GGG | - | chr1.1:7588134-7588153 | MS.gene33127:intron | 35.0% |
| !! | TGGAAAATTCCTTGATTTGC+TGG | + | chr1.1:7586840-7586859 | None:intergenic | 35.0% |
| !!! | ATTTTTTAATTGGTGCAGGC+TGG | - | chr1.1:7586750-7586769 | MS.gene33127:intron | 35.0% |
| !!! | GGTGATTTTTTAATTGGTGC+AGG | - | chr1.1:7586746-7586765 | MS.gene33127:intron | 35.0% |
| !!! | TGTAGTTAGTTTTGGGAGTT+TGG | - | chr1.1:7588338-7588357 | MS.gene33127:CDS | 35.0% |
| !!! | TTGTGTTTTTTGGCAGGTTA+TGG | - | chr1.1:7587393-7587412 | MS.gene33127:intron | 35.0% |
| AATCATTGAGAGCCTCAACT+CGG | + | chr1.1:7586044-7586063 | None:intergenic | 40.0% | |
| ACTGAAGCAGAAAGGAAACT+AGG | - | chr1.1:7588543-7588562 | MS.gene33127:intron | 40.0% | |
| ATAACCAGAGCTCAGTAAGA+GGG | + | chr1.1:7589157-7589176 | None:intergenic | 40.0% | |
| ATCATAACCAACCTGTTGTG+AGG | + | chr1.1:7586301-7586320 | None:intergenic | 40.0% | |
| ATTAATCGGCAGAGTAGGAA+TGG | + | chr1.1:7586482-7586501 | None:intergenic | 40.0% | |
| CACAATACAGTTTCCTCACT+TGG | + | chr1.1:7586450-7586469 | None:intergenic | 40.0% | |
| CAGAGTTCTATATCCTTCAC+CGG | - | chr1.1:7588689-7588708 | MS.gene33127:CDS | 40.0% | |
| CAGGACCAATCTCAAAAACA+CGG | + | chr1.1:7587204-7587223 | None:intergenic | 40.0% | |
| CTACAATCAAGATGAGAGTG+TGG | - | chr1.1:7586603-7586622 | MS.gene33127:CDS | 40.0% | |
| CTAGATCCAGCAATCAACTT+AGG | + | chr1.1:7587076-7587095 | None:intergenic | 40.0% | |
| CTATTGTTGAGGAATTCCTG+GGG | - | chr1.1:7588303-7588322 | MS.gene33127:CDS | 40.0% | |
| CTCCCAAAACTAACTACAAG+AGG | + | chr1.1:7588336-7588355 | None:intergenic | 40.0% | |
| CTCCCTTACATGAATGTTGA+TGG | - | chr1.1:7586725-7586744 | MS.gene33127:intron | 40.0% | |
| CTTCCAAAAATTCAGGCATG+TGG | + | chr1.1:7589011-7589030 | None:intergenic | 40.0% | |
| GAAAATGTACTTGGGTAGAC+AGG | - | chr1.1:7588053-7588072 | MS.gene33127:CDS | 40.0% | |
| GACAGGGATAAAAGACGTAA+AGG | + | chr1.1:7587832-7587851 | None:intergenic | 40.0% | |
| GACATTTGCTTGTGAAGTTG+AGG | + | chr1.1:7587163-7587182 | None:intergenic | 40.0% | |
| GCACGTTCTTCCAAAAATTC+AGG | + | chr1.1:7589018-7589037 | None:intergenic | 40.0% | |
| GCAGCATCCTCGATATTAAT+CGG | + | chr1.1:7586496-7586515 | None:intergenic | 40.0% | |
| GGAAGATACTGCACATTCAT+AGG | + | chr1.1:7587677-7587696 | None:intergenic | 40.0% | |
| TACAAGAGGAAAAATACCCC+AGG | + | chr1.1:7588322-7588341 | None:intergenic | 40.0% | |
| TATAACCAGAGCTCAGTAAG+AGG | + | chr1.1:7589158-7589177 | None:intergenic | 40.0% | |
| TCGATATTAATCGGCAGAGT+AGG | + | chr1.1:7586487-7586506 | None:intergenic | 40.0% | |
| TCTTTAGGCTGGACTACAAA+GGG | - | chr1.1:7587113-7587132 | MS.gene33127:intron | 40.0% | |
| TGAAATTGAGAAGGCCATTC+AGG | - | chr1.1:7586528-7586547 | MS.gene33127:intron | 40.0% | |
| TTAGGCGAGGAGATAATATC+AGG | - | chr1.1:7588973-7588992 | MS.gene33127:CDS | 40.0% | |
| TTGATTGCTGGATCTAGTGA+GGG | - | chr1.1:7587079-7587098 | MS.gene33127:intron | 40.0% | |
| ! | AAAATGGTCTTACAGCCAAC+GGG | + | chr1.1:7588717-7588736 | None:intergenic | 40.0% |
| ! | AACACCTTTAGGGGTTCAAA+CGG | + | chr1.1:7587505-7587524 | None:intergenic | 40.0% |
| ! | ACAACTTGTTCGTGTGAATC+AGG | - | chr1.1:7586776-7586795 | MS.gene33127:intron | 40.0% |
| ! | ACACATTTGGAGAAGCATGA+TGG | + | chr1.1:7588885-7588904 | None:intergenic | 40.0% |
| ! | ATGCATTTTGCGGTGTGATA+CGG | - | chr1.1:7586992-7587011 | MS.gene33127:intron | 40.0% |
| ! | CCCAAAAGCTTCAGCTTTTA+TGG | + | chr1.1:7588916-7588935 | None:intergenic | 40.0% |
| ! | GAATCTTCTGCTCTAAACAC+AGG | + | chr1.1:7587223-7587242 | None:intergenic | 40.0% |
| ! | GATTTTGCTTTGCAGGAAGT+TGG | - | chr1.1:7588489-7588508 | MS.gene33127:intron | 40.0% |
| ! | GGAGTAGAGATTGAACCTTT+TGG | - | chr1.1:7588510-7588529 | MS.gene33127:intron | 40.0% |
| ! | GTGGAAGTTTAAGCACTGTT+AGG | - | chr1.1:7587871-7587890 | MS.gene33127:CDS | 40.0% |
| ! | GTTGCTGCTTGTAAGTTTGT+TGG | - | chr1.1:7586937-7586956 | MS.gene33127:intron | 40.0% |
| ! | GTTTGCGTTTGAAATTGTCG+AGG | - | chr1.1:7587345-7587364 | MS.gene33127:intron | 40.0% |
| ! | TACTCTGCCGATTAATATCG+AGG | - | chr1.1:7586486-7586505 | MS.gene33127:intron | 40.0% |
| ! | TATGTAAGCCGCAGAGTATT+TGG | + | chr1.1:7587698-7587717 | None:intergenic | 40.0% |
| ! | TGTTGTGAGGCACCTTTAAT+AGG | + | chr1.1:7586288-7586307 | None:intergenic | 40.0% |
| !! | AGAAGGTATTCAGATGCTCA+AGG | - | chr1.1:7587721-7587740 | MS.gene33127:CDS | 40.0% |
| !! | ATGTGATAGGATGATGATGG+CGG | - | chr1.1:7587798-7587817 | MS.gene33127:intron | 40.0% |
| !! | CTGCTTACATCGATTCTTTC+AGG | - | chr1.1:7589070-7589089 | MS.gene33127:CDS | 40.0% |
| !! | TAGTTTGGGTTGTCATAGCA+AGG | + | chr1.1:7588748-7588767 | None:intergenic | 40.0% |
| !! | TATTAAAGGTGCCTCACAAC+AGG | - | chr1.1:7586287-7586306 | MS.gene33127:intron | 40.0% |
| !!! | TTTGGCCGTGTTTTTGAGAT+TGG | - | chr1.1:7587196-7587215 | MS.gene33127:intron | 40.0% |
| AAGCAAAAAGGCCTGCAAGA+AGG | - | chr1.1:7585858-7585877 | MS.gene33127:CDS | 45.0% | |
| AGATATGGTGTACCACCACA+CGG | - | chr1.1:7589234-7589253 | MS.gene33127:CDS | 45.0% | |
| ATCATTGAGAGCCTCAACTC+GGG | + | chr1.1:7586043-7586062 | None:intergenic | 45.0% | |
| ATCTGCGGACTCACTAAATC+AGG | + | chr1.1:7586192-7586211 | None:intergenic | 45.0% | |
| ATTCCAGCCGCTCCTATTAA+AGG | - | chr1.1:7586273-7586292 | MS.gene33127:intron | 45.0% | |
| CACAAGCTATTCGACCAGTT+GGG | - | chr1.1:7586100-7586119 | MS.gene33127:CDS | 45.0% | |
| CAGCAATCAACTTAGGAGTG+TGG | + | chr1.1:7587069-7587088 | None:intergenic | 45.0% | |
| CGACATCGACAATAGACTCA+CGG | + | chr1.1:7586239-7586258 | None:intergenic | 45.0% | |
| CGTGTAGTAATGCTCTTCTG+TGG | - | chr1.1:7589279-7589298 | MS.gene33127:CDS | 45.0% | |
| CTGCGGCTTACATATGAAGA+AGG | - | chr1.1:7587704-7587723 | MS.gene33127:CDS | 45.0% | |
| GAGTCTATTGTCGATGTCGA+AGG | - | chr1.1:7586240-7586259 | MS.gene33127:intron | 45.0% | |
| GCACAGATGCCTATGAGTAA+AGG | + | chr1.1:7587245-7587264 | None:intergenic | 45.0% | |
| GTCTTTAGGCTGGACTACAA+AGG | - | chr1.1:7587112-7587131 | MS.gene33127:intron | 45.0% | |
| GTTGATTGCTGGATCTAGTG+AGG | - | chr1.1:7587078-7587097 | MS.gene33127:intron | 45.0% | |
| TAACCAGAGCTCAGTAAGAG+GGG | + | chr1.1:7589156-7589175 | None:intergenic | 45.0% | |
| TAAGAAGGATCTCGAAGCTG+TGG | - | chr1.1:7587468-7587487 | MS.gene33127:intron | 45.0% | |
| TATTGTCGATGTCGAAGGTG+TGG | - | chr1.1:7586245-7586264 | MS.gene33127:intron | 45.0% | |
| TCATTACTCGCTGCAAGACA+AGG | + | chr1.1:7588471-7588490 | None:intergenic | 45.0% | |
| TCCAGTCGTTGACATTGACA+GGG | + | chr1.1:7586020-7586039 | None:intergenic | 45.0% | |
| TGAGGCTCTCAATGATTCAC+TGG | - | chr1.1:7586047-7586066 | MS.gene33127:intron | 45.0% | |
| TGATTCACTGGAGAACAAGC+CGG | - | chr1.1:7586059-7586078 | MS.gene33127:intron | 45.0% | |
| TGATTTAGTGAGTCCGCAGA+TGG | - | chr1.1:7586191-7586210 | MS.gene33127:intron | 45.0% | |
| TTCCAACTTGAGACTGGATG+TGG | + | chr1.1:7586860-7586879 | None:intergenic | 45.0% | |
| TTCCACATCCAGTCTCAAGT+TGG | - | chr1.1:7586855-7586874 | MS.gene33127:intron | 45.0% | |
| TTCGATTGGAGCTCAATGAG+CGG | + | chr1.1:7585994-7586013 | None:intergenic | 45.0% | |
| TTTAATAGGAGCGGCTGGAA+TGG | + | chr1.1:7586274-7586293 | None:intergenic | 45.0% | |
| ! | ACACCTTTAGGGGTTCAAAC+GGG | + | chr1.1:7587504-7587523 | None:intergenic | 45.0% |
| ! | GATCCCCTTGCTGTCAATTA+TGG | - | chr1.1:7585961-7585980 | MS.gene33127:intron | 45.0% |
| ! | TGAGGCACCTTTAATAGGAG+CGG | + | chr1.1:7586283-7586302 | None:intergenic | 45.0% |
| !! | CACACTCCTAAGTTGATTGC+TGG | - | chr1.1:7587067-7587086 | MS.gene33127:intron | 45.0% |
| AACGCCATCTTCTTCCCAAC+TGG | + | chr1.1:7586117-7586136 | None:intergenic | 50.0% | |
| AATAGACTCACGGCTGAGAG+CGG | + | chr1.1:7586229-7586248 | None:intergenic | 50.0% | |
| AGAAAGGAAACTAGGCCAGC+TGG | - | chr1.1:7588551-7588570 | MS.gene33127:intron | 50.0% | |
| AGAGAGAGTCGATGTAGCAG+AGG | + | chr1.1:7585932-7585951 | None:intergenic | 50.0% | |
| AGGCATCTGTGCGAGTTTAC+AGG | - | chr1.1:7587253-7587272 | MS.gene33127:intron | 50.0% | |
| ATCTCCTCGCCTAAGCAACA+AGG | + | chr1.1:7588967-7588986 | None:intergenic | 50.0% | |
| ATTGCTGGATCTAGTGAGGG+TGG | - | chr1.1:7587082-7587101 | MS.gene33127:intron | 50.0% | |
| CATTGACAGGGGTCTTCGAT+TGG | + | chr1.1:7586008-7586027 | None:intergenic | 50.0% | |
| CCAGTCGTTGACATTGACAG+GGG | + | chr1.1:7586019-7586038 | None:intergenic | 50.0% | |
| CTGCGAACACCAGCAAATCA+AGG | - | chr1.1:7586828-7586847 | MS.gene33127:intron | 50.0% | |
| GAAGAACGTGCACAAGCTTG+CGG | - | chr1.1:7589027-7589046 | MS.gene33127:CDS | 50.0% | |
| GATCCTTCCGATGACAGTGT+CGG | + | chr1.1:7585829-7585848 | None:intergenic | 50.0% | |
| GCACAAGCTATTCGACCAGT+TGG | - | chr1.1:7586099-7586118 | MS.gene33127:CDS | 50.0% | |
| GCGGCAAATTTCACCATCTG+CGG | + | chr1.1:7586207-7586226 | None:intergenic | 50.0% | |
| GTACCCGTTTGAACCCCTAA+AGG | - | chr1.1:7587498-7587517 | MS.gene33127:intron | 50.0% | |
| GTCCAGTCGTTGACATTGAC+AGG | + | chr1.1:7586021-7586040 | None:intergenic | 50.0% | |
| TCAAGAGCCGACACTGTCAT+CGG | - | chr1.1:7585819-7585838 | MS.gene33127:CDS | 50.0% | |
| TCGACCAGTTGGGAAGAAGA+TGG | - | chr1.1:7586110-7586129 | MS.gene33127:CDS | 50.0% | |
| TCGATTGGAGCTCAATGAGC+GGG | + | chr1.1:7585993-7586012 | None:intergenic | 50.0% | |
| TGGTTTCACCGTACAGTGCT+TGG | - | chr1.1:7586155-7586174 | MS.gene33127:CDS | 50.0% | |
| TTGCGGTGTGATACGGTGTT+GGG | - | chr1.1:7586999-7587018 | MS.gene33127:intron | 50.0% | |
| TTTATCCACGTGACCCACTC+AGG | - | chr1.1:7589328-7589347 | MS.gene33127:CDS | 50.0% | |
| TTTGCGGTGTGATACGGTGT+TGG | - | chr1.1:7586998-7587017 | MS.gene33127:intron | 50.0% | |
| ! | AACAAGCCGGTTCTAATCCG+TGG | - | chr1.1:7586072-7586091 | MS.gene33127:intron | 50.0% |
| ! | ACAAGCCGGTTCTAATCCGT+GGG | - | chr1.1:7586073-7586092 | MS.gene33127:CDS | 50.0% |
| ! | CAATCCTTGTTGCTTAGGCG+AGG | - | chr1.1:7588960-7588979 | MS.gene33127:CDS | 50.0% |
| ! | TGCCTGAACCAAGCACTGTA+CGG | + | chr1.1:7586166-7586185 | None:intergenic | 50.0% |
| !! | AAAGGTGCCTCACAACAGGT+TGG | - | chr1.1:7586291-7586310 | MS.gene33127:intron | 50.0% |
| !! | CTTGATTTGCTGGTGTTCGC+AGG | + | chr1.1:7586830-7586849 | None:intergenic | 50.0% |
| !!! | GCGTTGCTTTTCCAGCTTTG+CGG | + | chr1.1:7585887-7585906 | None:intergenic | 50.0% |
| AGGGTGGAGCTGCTGTCTTT+AGG | - | chr1.1:7587098-7587117 | MS.gene33127:intron | 55.0% | |
| AGTCGATGTAGCAGAGGTGG+CGG | + | chr1.1:7585926-7585945 | None:intergenic | 55.0% | |
| CAAGAAGGATGCCGCAAAGC+TGG | - | chr1.1:7585873-7585892 | MS.gene33127:CDS | 55.0% | |
| CACCGTACAGTGCTTGGTTC+AGG | - | chr1.1:7586161-7586180 | MS.gene33127:CDS | 55.0% | |
| CCCCTGTCAATGTCAACGAC+TGG | - | chr1.1:7586016-7586035 | MS.gene33127:intron | 55.0% | |
| CTTTGCGGCATCCTTCTTGC+AGG | + | chr1.1:7585872-7585891 | None:intergenic | 55.0% | |
| GAAGTTGAGGTGACTGAGCC+AGG | + | chr1.1:7587150-7587169 | None:intergenic | 55.0% | |
| GAGAGTCGATGTAGCAGAGG+TGG | + | chr1.1:7585929-7585948 | None:intergenic | 55.0% | |
| GCACCTTTAATAGGAGCGGC+TGG | + | chr1.1:7586279-7586298 | None:intergenic | 55.0% | |
| GTCTTACAGCCAACGGGTAC+CGG | + | chr1.1:7588711-7588730 | None:intergenic | 55.0% | |
| TATCCTTCACCGGTACCCGT+TGG | - | chr1.1:7588699-7588718 | MS.gene33127:CDS | 55.0% | |
| TATGGTGTACCACCACACGG+TGG | - | chr1.1:7589237-7589256 | MS.gene33127:CDS | 55.0% | |
| TGCACAAGCTTGCGGCATTG+AGG | - | chr1.1:7589035-7589054 | MS.gene33127:CDS | 55.0% | |
| TGGAGCTGCTGTCTTTAGGC+TGG | - | chr1.1:7587102-7587121 | MS.gene33127:intron | 55.0% | |
| ! | GAATAGCTTGTGCCCTCCCA+CGG | + | chr1.1:7586092-7586111 | None:intergenic | 55.0% |
| ! | GGTGTGATACGGTGTTGGGT+AGG | - | chr1.1:7587003-7587022 | MS.gene33127:intron | 55.0% |
| ACTCCAAAGCCACCGTGTGG+TGG | + | chr1.1:7589249-7589268 | None:intergenic | 60.0% | |
| CAAAGGGCAACCTGCATGCC+TGG | - | chr1.1:7587129-7587148 | MS.gene33127:intron | 60.0% | |
| CAACGACTGGACCCGAGTTG+AGG | - | chr1.1:7586029-7586048 | MS.gene33127:intron | 60.0% | |
| CCTACTCCAAAGCCACCGTG+TGG | + | chr1.1:7589252-7589271 | None:intergenic | 60.0% | |
| CTGCCCCTCTTACTGAGCTC+TGG | - | chr1.1:7589150-7589169 | MS.gene33127:CDS | 60.0% | |
| GAGCCGACACTGTCATCGGA+AGG | - | chr1.1:7585823-7585842 | MS.gene33127:CDS | 60.0% | |
| GCAATCCTGAGTGGGTCACG+TGG | + | chr1.1:7589336-7589355 | None:intergenic | 60.0% | |
| GTACCACCACACGGTGGCTT+TGG | - | chr1.1:7589243-7589262 | MS.gene33127:CDS | 60.0% | |
| ! | AGCCGGTTCTAATCCGTGGG+AGG | - | chr1.1:7586076-7586095 | MS.gene33127:CDS | 60.0% |
| ! | GCCGGTTCTAATCCGTGGGA+GGG | - | chr1.1:7586077-7586096 | MS.gene33127:CDS | 60.0% |
| !! | CCACACGGTGGCTTTGGAGT+AGG | - | chr1.1:7589249-7589268 | MS.gene33127:CDS | 60.0% |
| !! | CGGTGGCTTTGGAGTAGGCT+TGG | - | chr1.1:7589254-7589273 | MS.gene33127:CDS | 60.0% |
| !! | GCCCTCCCACGGATTAGAAC+CGG | + | chr1.1:7586081-7586100 | None:intergenic | 60.0% |
| AGACTCACGGCTGAGAGCGG+CGG | + | chr1.1:7586226-7586245 | None:intergenic | 65.0% | |
| GGTGACTGAGCCAGGCATGC+AGG | + | chr1.1:7587142-7587161 | None:intergenic | 65.0% | |
| ! | AGGTGGCGGCGGCAACTTCT+CGG | + | chr1.1:7585912-7585931 | None:intergenic | 65.0% |
| ! | CGATGTAGCAGAGGTGGCGG+CGG | + | chr1.1:7585923-7585942 | None:intergenic | 65.0% |
| !! | CAGCCAACGGGTACCGGTGA+AGG | + | chr1.1:7588705-7588724 | None:intergenic | 65.0% |
| TGGCGGCGGCAACTTCTCGG+CGG | + | chr1.1:7585909-7585928 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 7585802 | 7589362 | 7585802 | ID=MS.gene33127 |
| chr1.1 | mRNA | 7585802 | 7589362 | 7585802 | ID=MS.gene33127.t1;Parent=MS.gene33127 |
| chr1.1 | exon | 7588856 | 7589362 | 7588856 | ID=MS.gene33127.t1.exon1;Parent=MS.gene33127.t1 |
| chr1.1 | CDS | 7588856 | 7589362 | 7588856 | ID=cds.MS.gene33127.t1;Parent=MS.gene33127.t1 |
| chr1.1 | exon | 7588615 | 7588725 | 7588615 | ID=MS.gene33127.t1.exon2;Parent=MS.gene33127.t1 |
| chr1.1 | CDS | 7588615 | 7588725 | 7588615 | ID=cds.MS.gene33127.t1;Parent=MS.gene33127.t1 |
| chr1.1 | exon | 7588283 | 7588396 | 7588283 | ID=MS.gene33127.t1.exon3;Parent=MS.gene33127.t1 |
| chr1.1 | CDS | 7588283 | 7588396 | 7588283 | ID=cds.MS.gene33127.t1;Parent=MS.gene33127.t1 |
| chr1.1 | exon | 7587849 | 7588139 | 7587849 | ID=MS.gene33127.t1.exon4;Parent=MS.gene33127.t1 |
| chr1.1 | CDS | 7587849 | 7588139 | 7587849 | ID=cds.MS.gene33127.t1;Parent=MS.gene33127.t1 |
| chr1.1 | exon | 7587645 | 7587755 | 7587645 | ID=MS.gene33127.t1.exon5;Parent=MS.gene33127.t1 |
| chr1.1 | CDS | 7587645 | 7587755 | 7587645 | ID=cds.MS.gene33127.t1;Parent=MS.gene33127.t1 |
| chr1.1 | exon | 7587422 | 7587475 | 7587422 | ID=MS.gene33127.t1.exon6;Parent=MS.gene33127.t1 |
| chr1.1 | CDS | 7587422 | 7587475 | 7587422 | ID=cds.MS.gene33127.t1;Parent=MS.gene33127.t1 |
| chr1.1 | exon | 7586581 | 7586660 | 7586581 | ID=MS.gene33127.t1.exon7;Parent=MS.gene33127.t1 |
| chr1.1 | CDS | 7586581 | 7586660 | 7586581 | ID=cds.MS.gene33127.t1;Parent=MS.gene33127.t1 |
| chr1.1 | exon | 7586368 | 7586483 | 7586368 | ID=MS.gene33127.t1.exon8;Parent=MS.gene33127.t1 |
| chr1.1 | CDS | 7586368 | 7586483 | 7586368 | ID=cds.MS.gene33127.t1;Parent=MS.gene33127.t1 |
| chr1.1 | exon | 7586073 | 7586187 | 7586073 | ID=MS.gene33127.t1.exon9;Parent=MS.gene33127.t1 |
| chr1.1 | CDS | 7586073 | 7586187 | 7586073 | ID=cds.MS.gene33127.t1;Parent=MS.gene33127.t1 |
| chr1.1 | exon | 7585802 | 7585928 | 7585802 | ID=MS.gene33127.t1.exon10;Parent=MS.gene33127.t1 |
| chr1.1 | CDS | 7585802 | 7585928 | 7585802 | ID=cds.MS.gene33127.t1;Parent=MS.gene33127.t1 |
| Gene Sequence |
| Protein sequence |
