AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51586

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51586.t1 MTR_1g014140 93.429 487 25 1 72 551 55 541 0.0 932
MS.gene51586.t1 MTR_5g028360 68.797 532 140 6 26 551 78 589 0.0 707
MS.gene51586.t1 MTR_4g100920 25.304 494 287 16 97 546 86 541 3.09e-30 125
MS.gene51586.t1 MTR_8g102050 30.961 281 174 8 281 548 275 548 5.04e-26 112
MS.gene51586.t1 MTR_7g101050 31.560 282 173 10 281 548 298 573 4.66e-25 109
MS.gene51586.t1 MTR_2g036600 23.984 492 325 15 91 543 107 588 4.70e-23 103
MS.gene51586.t1 MTR_4g127770 22.303 547 351 18 41 543 559 1075 8.31e-21 97.4
MS.gene51586.t1 MTR_4g127790 23.529 357 237 10 219 542 32 385 2.97e-15 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51586.t1 AT4G31180 70.323 465 137 1 88 551 94 558 0.0 701
MS.gene51586.t1 AT4G31180 70.323 465 137 1 88 551 94 558 0.0 701
MS.gene51586.t1 AT4G26870 67.457 464 148 2 88 551 72 532 0.0 659
MS.gene51586.t1 AT5G56680 30.108 279 175 8 281 546 296 567 5.05e-27 115
MS.gene51586.t1 AT4G17300 25.536 466 252 15 132 546 141 562 1.05e-26 114
MS.gene51586.t1 AT4G17300 25.536 466 252 15 132 546 161 582 1.19e-26 114
MS.gene51586.t1 AT1G70980 28.571 280 180 7 281 546 293 566 4.61e-23 103
MS.gene51586.t1 AT3G07420 24.907 269 188 8 285 544 368 631 3.09e-12 69.7

Find 140 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTACATTGATTCTTTC+AGG 0.118251 1.3:-8238914 MS.gene51586:intron
CATTGATGTCCCCAAGAATT+TGG 0.169294 1.3:-8242218 None:intergenic
CAGCTTTGCGAGTTCCTTCT+TGG 0.187183 1.3:+8242096 None:intergenic
ATTCCAGCCGCTCCTATTAA+AGG 0.200895 1.3:-8241712 MS.gene51586:CDS
CACAAGCAAATGTCAATATT+TGG 0.203397 1.3:-8240811 MS.gene51586:CDS
TTCTTAGTCATCAGAGAAAA+TGG 0.255342 1.3:-8241850 MS.gene51586:CDS
AAGTTGACATTGGAGGTTTC+CGG 0.264653 1.3:+8242170 None:intergenic
CAAACAAATTAACACCTTTA+GGG 0.270476 1.3:+8240468 None:intergenic
TCAAAAGAGTTACTGTAGTT+TGG 0.284688 1.3:+8239218 None:intergenic
TATGTAAGCCGCAGAGTATT+TGG 0.299031 1.3:+8240285 None:intergenic
TGAAATTGAGAAGGCCATTC+AGG 0.299926 1.3:-8241452 MS.gene51586:intron
TGTTGTGAGGCACCTTTAAT+AGG 0.308209 1.3:+8241700 None:intergenic
TGGAAAATTCCTTGATTTGC+TGG 0.311128 1.3:+8241143 None:intergenic
AGGCATCTGTGCGAGTTTAC+AGG 0.319353 1.3:-8240727 MS.gene51586:CDS
GGGTTGCAATTCCAAATTCT+TGG 0.322871 1.3:+8242207 None:intergenic
CAAAAGAGTTACTGTAGTTT+GGG 0.335107 1.3:+8239219 None:intergenic
CACCGTACAGTGCTTGGTTC+AGG 0.346864 1.3:-8241824 MS.gene51586:CDS
CACAATACAGTTTCCTCACT+TGG 0.354867 1.3:+8241533 None:intergenic
CAGAAGATTCCTTTACTCAT+AGG 0.359787 1.3:-8240747 MS.gene51586:CDS
GGTTGCAATTCCAAATTCTT+GGG 0.368431 1.3:+8242208 None:intergenic
CACACTCCTAAGTTGATTGC+TGG 0.375345 1.3:-8240913 MS.gene51586:CDS
TCAACTTCGGTCCAGTCGTC+AGG 0.376176 1.3:+8241958 None:intergenic
TAGCAAGGCATTGTATAAAA+TGG 0.394303 1.3:+8239248 None:intergenic
AGGTGGCGGCGGCAACTTCT+CGG 0.397158 1.3:+8242056 None:intergenic
GTACCACCACACGGTGGCTT+TGG 0.402704 1.3:-8238696 MS.gene51586:CDS
ACAACTTGTTCGTGTGAATC+AGG 0.411639 1.3:-8241204 MS.gene51586:CDS
TACAGGTCTTGATGTTGAAA+TGG 0.423398 1.3:-8240710 MS.gene51586:CDS
CAAGAAGGAACTCGCAAAGC+TGG 0.423555 1.3:-8242095 MS.gene51586:CDS
CAAAGGGAAACCTGCATGCC+TGG 0.426932 1.3:-8240851 MS.gene51586:CDS
AGGGTGGAGCTGCTGTCTTT+AGG 0.428133 1.3:-8240882 MS.gene51586:CDS
GGAGTAGAGATTGAACCTTT+TGG 0.442706 1.3:-8239468 MS.gene51586:CDS
AACACCTTTAGGGGTTCAAA+CGG 0.444877 1.3:+8240478 None:intergenic
ATCTGCGGACTCACTAAATC+AGG 0.450583 1.3:+8241796 None:intergenic
CTTGATTTGCTGGTGTTCGC+AGG 0.452358 1.3:+8241153 None:intergenic
TGGAGCTGCTGTCTTTAGGC+TGG 0.464922 1.3:-8240878 MS.gene51586:CDS
GATTAAGAAACATTATTATG+AGG 0.466183 1.3:-8240686 MS.gene51586:intron
TTAGGTGAGGAGATAATATC+AGG 0.470682 1.3:-8239011 MS.gene51586:intron
TATTAAAGGTGCCTCACAAC+AGG 0.473545 1.3:-8241698 MS.gene51586:intron
GAGTCTATTGTCGATGTTGA+AGG 0.473757 1.3:-8241745 MS.gene51586:CDS
TTACAGTTCCAACTTGAGAC+TGG 0.475421 1.3:+8241117 None:intergenic
AATGCCATCTTCTTCCCAAC+TGG 0.476125 1.3:+8241871 None:intergenic
CTTTGCGAGTTCCTTCTTGG+AGG 0.479823 1.3:+8242099 None:intergenic
ACATTGGAGGTTTCCGGAGA+AGG 0.487766 1.3:+8242176 None:intergenic
AACCCTAGCAATACCTTCTC+CGG 0.488131 1.3:-8242189 MS.gene51586:CDS
TGAGATTCTGAAGTTGACAT+TGG 0.488423 1.3:+8242160 None:intergenic
CGGTGGCTTTGGAGTAGGCT+TGG 0.490259 1.3:-8238685 MS.gene51586:CDS
GCAGCATCCTCGATATTAAA+CGG 0.494569 1.3:+8241487 None:intergenic
TGAGGCTCTCAATGATTCAC+TGG 0.499024 1.3:-8241938 MS.gene51586:CDS
TGGTTTCACCGTACAGTGCT+TGG 0.499781 1.3:-8241830 MS.gene51586:CDS
TTTGTTTCTGATGACAGTGT+CGG 0.500363 1.3:+8242133 None:intergenic
AAAATGGTCTTACAGCCAAC+GGG 0.502027 1.3:+8239264 None:intergenic
GTCTTACAGCCAACGGGTAC+CGG 0.506627 1.3:+8239270 None:intergenic
TCAGTATTCAAGTCACCAAA+AGG 0.506705 1.3:+8239453 None:intergenic
TCATTGAGCTCCCTGACGAC+TGG 0.506929 1.3:-8241969 MS.gene51586:CDS
CTAGATCCAGCAATCAACTT+AGG 0.510006 1.3:+8240907 None:intergenic
GATTCTGAAGTTGACATTGG+AGG 0.510514 1.3:+8242163 None:intergenic
GGTGACTGAGCCAGGCATGC+AGG 0.511713 1.3:+8240841 None:intergenic
TTTAATAGGAGCGGCTGGAA+TGG 0.513685 1.3:+8241714 None:intergenic
GCACCTTTAATAGGAGCGGC+TGG 0.516328 1.3:+8241709 None:intergenic
CACAAGCTATTCGACCAGTT+GGG 0.517268 1.3:-8241885 MS.gene51586:CDS
GCACAAGCTATTCGACCAGT+TGG 0.517849 1.3:-8241886 MS.gene51586:CDS
TTCCACATCCAGTCTCAAGT+TGG 0.521976 1.3:-8241125 MS.gene51586:CDS
ACACCTTTAGGGGTTCAAAC+GGG 0.524064 1.3:+8240479 None:intergenic
CAGCCAACGGGTACCGGTGA+AGG 0.524085 1.3:+8239276 None:intergenic
CTGCGGCTTACATATGAAGA+AGG 0.526092 1.3:-8240276 MS.gene51586:CDS
TTTCCGGAGAAGGTATTGCT+AGG 0.528622 1.3:+8242186 None:intergenic
AATGGATATATATACCTGAA+TGG 0.529761 1.3:+8241438 None:intergenic
GAAACTGTATTGTGTGAGTA+AGG 0.532678 1.3:-8241524 MS.gene51586:CDS
AAACAAATTAACACCTTTAG+GGG 0.533347 1.3:+8240469 None:intergenic
GAATAGCTTGTGCCCTCCCA+CGG 0.535699 1.3:+8241896 None:intergenic
CTGCGAACACCAGCAAATCA+AGG 0.537117 1.3:-8241152 MS.gene51586:CDS
GAAGTTGAGGTGACTGAGCC+AGG 0.538658 1.3:+8240833 None:intergenic
TCTTTAGGCTGGACTACAAA+GGG 0.538957 1.3:-8240867 MS.gene51586:CDS
AGAAAGGAAACTAGGCCAGC+TGG 0.539715 1.3:-8239427 MS.gene51586:CDS
TACTCTGCCGTTTAATATCG+AGG 0.540763 1.3:-8241494 MS.gene51586:CDS
AACAAGCAGGTTCTAATCCG+TGG 0.542895 1.3:-8241913 MS.gene51586:CDS
CGATGTAGCAGAGGTGGCGG+CGG 0.543849 1.3:+8242045 None:intergenic
TCGATATTAAACGGCAGAGT+AGG 0.544830 1.3:+8241496 None:intergenic
CGGCGGCAACTTCTCGGCGG+CGG 0.544898 1.3:+8242062 None:intergenic
CCACACGGTGGCTTTGGAGT+AGG 0.547341 1.3:-8238690 MS.gene51586:CDS
TTTGAACACAAAATGTAAGA+AGG 0.547679 1.3:-8240527 MS.gene51586:CDS
TAAAATGGTCTTACAGCCAA+CGG 0.552316 1.3:+8239263 None:intergenic
CGTCAGGGAGCTCAATGAGC+GGG 0.553502 1.3:+8241974 None:intergenic
GACATTTGCTTGTGAAGTTG+AGG 0.558674 1.3:+8240820 None:intergenic
GCACAGATGCCTATGAGTAA+AGG 0.560403 1.3:+8240738 None:intergenic
TTCCAACTTGAGACTGGATG+TGG 0.562506 1.3:+8241123 None:intergenic
TTCCGGAGAAGGTATTGCTA+GGG 0.566546 1.3:+8242187 None:intergenic
AGTCGATGTAGCAGAGGTGG+CGG 0.572655 1.3:+8242042 None:intergenic
CAGAGTTCTATATCCTTCAC+CGG 0.573477 1.3:-8239289 MS.gene51586:CDS
ATTAAACGGCAGAGTAGGAA+TGG 0.575600 1.3:+8241501 None:intergenic
TAGTTTGGGTTGTCATAGCA+AGG 0.575643 1.3:+8239233 None:intergenic
GAAGAACGTGCACAAGCTTG+CGG 0.577219 1.3:-8238957 MS.gene51586:CDS
GTTGCAATTCCAAATTCTTG+GGG 0.580607 1.3:+8242209 None:intergenic
TCGACCAGTTGGGAAGAAGA+TGG 0.581394 1.3:-8241875 MS.gene51586:CDS
AGACTCACGGCTGAGAGCGG+CGG 0.581736 1.3:+8241762 None:intergenic
TGCACAAGCTTGCGGCATTG+AGG 0.583418 1.3:-8238949 MS.gene51586:CDS
ACTGAAGCAGAAAGGAAACT+AGG 0.584857 1.3:-8239435 MS.gene51586:CDS
GAGAGTCGATGTAGCAGAGG+TGG 0.585897 1.3:+8242039 None:intergenic
TGATTCACTGGAGAACAAGC+AGG 0.586415 1.3:-8241926 MS.gene51586:CDS
GTCTTTAGGCTGGACTACAA+AGG 0.586503 1.3:-8240868 MS.gene51586:CDS
AAACCATAATTGACAGCAAG+GGG 0.592667 1.3:+8242001 None:intergenic
ACTTGAATACTGAAGCAGAA+AGG 0.595013 1.3:-8239443 MS.gene51586:CDS
TGACGACTGGACCGAAGTTG+AGG 0.595296 1.3:-8241956 MS.gene51586:CDS
TGATTTAGTGAGTCCGCAGA+TGG 0.596877 1.3:-8241794 MS.gene51586:CDS
GTACCCGTTTGAACCCCTAA+AGG 0.597654 1.3:-8240482 MS.gene51586:intron
CAACTTCGGTCCAGTCGTCA+GGG 0.601964 1.3:+8241959 None:intergenic
AGAGAGAGTCGATGTAGCAG+AGG 0.603238 1.3:+8242036 None:intergenic
ATCATTGAGAGCCTCAACTT+CGG 0.607801 1.3:+8241945 None:intergenic
ATCAAAACCAACCTGTTGTG+AGG 0.608593 1.3:+8241687 None:intergenic
TGAGGCACCTTTAATAGGAG+CGG 0.608618 1.3:+8241705 None:intergenic
TATCCTTCACCGGTACCCGT+TGG 0.609544 1.3:-8239279 MS.gene51586:CDS
CAGCAATCAACTTAGGAGTG+TGG 0.611888 1.3:+8240914 None:intergenic
GCGGCAAATTTCACCATCTG+CGG 0.614321 1.3:+8241781 None:intergenic
ATTGCTGGATCTAGTGAGGG+TGG 0.614640 1.3:-8240898 MS.gene51586:CDS
ACAAGCAGGTTCTAATCCGT+GGG 0.615661 1.3:-8241912 MS.gene51586:CDS
TATTGTCGATGTTGAAGGTG+TGG 0.616511 1.3:-8241740 MS.gene51586:CDS
AGCAGGTTCTAATCCGTGGG+AGG 0.619320 1.3:-8241909 MS.gene51586:CDS
ATCATGGTGCAATCCTGAGT+GGG 0.620490 1.3:+8238598 None:intergenic
AATAGACTCACGGCTGAGAG+CGG 0.623488 1.3:+8241759 None:intergenic
AAGTGAAGTTGAAATTGAGA+AGG 0.624126 1.3:-8241461 MS.gene51586:CDS
TAAGAAGGATCTCGAAGCTG+TGG 0.629352 1.3:-8240512 MS.gene51586:CDS
GTTGATTGCTGGATCTAGTG+AGG 0.632210 1.3:-8240902 MS.gene51586:CDS
CAACATCGACAATAGACTCA+CGG 0.632667 1.3:+8241749 None:intergenic
CGTGTAGTAATGCTCTTCTG+TGG 0.635161 1.3:-8238660 MS.gene51586:CDS
TGCCTGAACCAAGCACTGTA+CGG 0.635520 1.3:+8241822 None:intergenic
GCAGGTTCTAATCCGTGGGA+GGG 0.639094 1.3:-8241908 MS.gene51586:CDS
AGAAGGTATTCAGATGCTCA+AGG 0.641602 1.3:-8240259 MS.gene51586:intron
TTGATTGCTGGATCTAGTGA+GGG 0.644845 1.3:-8240901 MS.gene51586:CDS
ACTCCAAAGCCACCGTGTGG+TGG 0.646949 1.3:+8238693 None:intergenic
CATCATGGTGCAATCCTGAG+TGG 0.650761 1.3:+8238597 None:intergenic
TCGTCAGGGAGCTCAATGAG+CGG 0.662590 1.3:+8241973 None:intergenic
AGATATGGTGTACCACCACA+CGG 0.671410 1.3:-8238705 MS.gene51586:CDS
AAAACCATAATTGACAGCAA+GGG 0.671638 1.3:+8242000 None:intergenic
TATAGGTTGAAATCCAAGTG+AGG 0.674003 1.3:-8241546 MS.gene51586:intron
GCAATCCTGAGTGGGTCACG+TGG 0.678111 1.3:+8238606 None:intergenic
TGGCGGCGGCAACTTCTCGG+CGG 0.684255 1.3:+8242059 None:intergenic
CCTACTCCAAAGCCACCGTG+TGG 0.729566 1.3:+8238690 None:intergenic
AACCATAATTGACAGCAAGG+GGG 0.738850 1.3:+8242002 None:intergenic
AGTATCTTCCAAATACTCTG+CGG 0.740430 1.3:-8240293 MS.gene51586:CDS
TATGGTGTACCACCACACGG+TGG 0.820152 1.3:-8238702 MS.gene51586:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAATATTAGAGAAAAT+AGG + chr1.3:8239723-8239742 None:intergenic 15.0%
!! ATTATATAAATGTCATTGAA+AGG - chr1.3:8240837-8240856 MS.gene51586:CDS 15.0%
!! TAACTATGATATATATAAGA+TGG - chr1.3:8241249-8241268 MS.gene51586:intron 15.0%
!! TTTCAATTTAATTCAAGAAA+AGG - chr1.3:8241060-8241079 MS.gene51586:intron 15.0%
!! TTTCTTGAATTAAATTGAAA+AGG + chr1.3:8241060-8241079 None:intergenic 15.0%
!!! ATAATTTTAAACTTTACTAC+AGG + chr1.3:8240792-8240811 None:intergenic 15.0%
!!! GATTTTGATTTTGATTATAA+TGG - chr1.3:8239223-8239242 MS.gene51586:CDS 15.0%
!! AAATTGATGAAAATGTACTT+GGG - chr1.3:8240879-8240898 MS.gene51586:CDS 20.0%
!! AACCAAATAATTGTTACTAT+TGG - chr1.3:8241030-8241049 MS.gene51586:intron 20.0%
!! AATAGTAACAATTATTTGGT+TGG + chr1.3:8241031-8241050 None:intergenic 20.0%
!! ACCAAATAATTGTTACTATT+GGG - chr1.3:8241031-8241050 MS.gene51586:intron 20.0%
!! GATTAAGAAACATTATTATG+AGG - chr1.3:8240126-8240145 MS.gene51586:intron 20.0%
!! TAAATTGATGAAAATGTACT+TGG - chr1.3:8240878-8240897 MS.gene51586:CDS 20.0%
!! TCAATTACAACATTTCTAAT+CGG + chr1.3:8239401-8239420 None:intergenic 20.0%
!! TCAATTTATTTGTTTGTAGT+GGG - chr1.3:8240404-8240423 MS.gene51586:intron 20.0%
!! TGTAATTCTATTTATAGGTA+TGG - chr1.3:8241498-8241517 MS.gene51586:CDS 20.0%
!! TTCAATTTATTTGTTTGTAG+TGG - chr1.3:8240403-8240422 MS.gene51586:intron 20.0%
!!! CATTTCTTAAGTTAGTTTAT+CGG + chr1.3:8239807-8239826 None:intergenic 20.0%
!!! TCAATTTTACAAAATAGACA+GGG + chr1.3:8240680-8240699 None:intergenic 20.0%
!!! TCTATTTTGTAAAATTGAGA+GGG - chr1.3:8240682-8240701 MS.gene51586:intron 20.0%
!!! TCTGGTTATAATGATTTTAT+GGG - chr1.3:8242041-8242060 MS.gene51586:CDS 20.0%
!!! TGTTGTTTTGTTTAATATAC+CGG - chr1.3:8239527-8239546 MS.gene51586:intron 20.0%
! AAACAAATTAACACCTTTAG+GGG + chr1.3:8240346-8240365 None:intergenic 25.0%
! AATGGATATATATACCTGAA+TGG + chr1.3:8239377-8239396 None:intergenic 25.0%
! ACATTATTATGAGGTACATT+TGG - chr1.3:8240135-8240154 MS.gene51586:intron 25.0%
! AGGACATATAGTTATTTGAT+TGG - chr1.3:8241080-8241099 MS.gene51586:intron 25.0%
! ATCAGAAACAAAAAGCAAAA+AGG - chr1.3:8238690-8238709 MS.gene51586:CDS 25.0%
! CAAACAAATTAACACCTTTA+GGG + chr1.3:8240347-8240366 None:intergenic 25.0%
! CCAAATAATTGTTACTATTG+GGG - chr1.3:8241032-8241051 MS.gene51586:intron 25.0%
! GATAAACAAACAAATGTGAT+AGG - chr1.3:8240617-8240636 MS.gene51586:intron 25.0%
! GTTCAATGTCTTTGTTAATA+CGG - chr1.3:8241991-8242010 MS.gene51586:CDS 25.0%
! TATAAGATTAAACTGTACAC+AGG + chr1.3:8240737-8240756 None:intergenic 25.0%
! TCGACTGTAATTCTATTTAT+AGG - chr1.3:8241493-8241512 MS.gene51586:CDS 25.0%
! TGATTGATCATTTACAGATA+TGG - chr1.3:8242092-8242111 MS.gene51586:CDS 25.0%
! TTCAATGTCTTTGTTAATAC+GGG - chr1.3:8241992-8242011 MS.gene51586:CDS 25.0%
! TTTAAACTTTACTACAGGAT+TGG + chr1.3:8240787-8240806 None:intergenic 25.0%
! TTTAGTCATTTCATTGATGA+TGG - chr1.3:8240958-8240977 MS.gene51586:CDS 25.0%
! TTTGAACACAAAATGTAAGA+AGG - chr1.3:8240285-8240304 MS.gene51586:CDS 25.0%
!! AACTTAAGAAATGCATTTTG+CGG - chr1.3:8239814-8239833 MS.gene51586:intron 25.0%
!! AGTTATAAAAGATTTGAGAC+AGG + chr1.3:8241428-8241447 None:intergenic 25.0%
!! CTAAATGAGATCTCATTTTA+TGG + chr1.3:8240943-8240962 None:intergenic 25.0%
!! CTATTTTGTAAAATTGAGAG+GGG - chr1.3:8240683-8240702 MS.gene51586:intron 25.0%
!! CTCAATTTTACAAAATAGAC+AGG + chr1.3:8240681-8240700 None:intergenic 25.0%
!! CTCTGGTTATAATGATTTTA+TGG - chr1.3:8242040-8242059 MS.gene51586:CDS 25.0%
!! CTGGTTATAATGATTTTATG+GGG - chr1.3:8242042-8242061 MS.gene51586:CDS 25.0%
!! GTCTATTTTGTAAAATTGAG+AGG - chr1.3:8240681-8240700 MS.gene51586:intron 25.0%
!! GTTATAAAAGATTTGAGACA+GGG + chr1.3:8241427-8241446 None:intergenic 25.0%
!! TATGGAAGTACAAACAAATT+TGG + chr1.3:8241726-8241745 None:intergenic 25.0%
!! TGGAATTTTCAAAAATTGGA+GGG + chr1.3:8241011-8241030 None:intergenic 25.0%
!! TGGTTGGAATTTTCAAAAAT+TGG + chr1.3:8241015-8241034 None:intergenic 25.0%
!! TTGGAATTTTCAAAAATTGG+AGG + chr1.3:8241012-8241031 None:intergenic 25.0%
!!! ACTGATACTTTTCTGTTTTT+TGG - chr1.3:8240215-8240234 MS.gene51586:intron 25.0%
!!! CTAAAGGTGTTAATTTGTTT+GGG - chr1.3:8240346-8240365 MS.gene51586:intron 25.0%
!!! TGATCAATCATTTAGTTTTC+TGG + chr1.3:8242082-8242101 None:intergenic 25.0%
!!! TTGATTATAATGGTGTTATG+TGG - chr1.3:8239233-8239252 MS.gene51586:CDS 25.0%
AAAAACCATAATTGACAGCA+AGG + chr1.3:8238816-8238835 None:intergenic 30.0%
AAAACCATAATTGACAGCAA+GGG + chr1.3:8238815-8238834 None:intergenic 30.0%
AAGAATCAATGTAAGCAGAT+AGG + chr1.3:8241896-8241915 None:intergenic 30.0%
AAGTGAAGTTGAAATTGAGA+AGG - chr1.3:8239351-8239370 MS.gene51586:intron 30.0%
AATCACAAAACCTAAGTAAC+AGG + chr1.3:8239153-8239172 None:intergenic 30.0%
AATGCTTTGGTATGACAATT+TGG - chr1.3:8241663-8241682 MS.gene51586:intron 30.0%
ACAACATTTCTAATCGGTAA+TGG + chr1.3:8239395-8239414 None:intergenic 30.0%
ACACACATCTTTAATCAGAA+AGG + chr1.3:8239503-8239522 None:intergenic 30.0%
CAAAAGAGTTACTGTAGTTT+GGG + chr1.3:8241596-8241615 None:intergenic 30.0%
CAAGTTAGTGACACTTATTT+AGG - chr1.3:8241107-8241126 MS.gene51586:intron 30.0%
CACAAGCAAATGTCAATATT+TGG - chr1.3:8240001-8240020 MS.gene51586:intron 30.0%
CCAAACAAATTAACACCTTT+AGG + chr1.3:8240348-8240367 None:intergenic 30.0%
CCCCAATAGTAACAATTATT+TGG + chr1.3:8241035-8241054 None:intergenic 30.0%
TCAAAAGAGTTACTGTAGTT+TGG + chr1.3:8241597-8241616 None:intergenic 30.0%
TTCTTAGTCATCAGAGAAAA+TGG - chr1.3:8238962-8238981 MS.gene51586:CDS 30.0%
TTTACATCAAGACTCAGAAA+AGG - chr1.3:8241213-8241232 MS.gene51586:CDS 30.0%
TTTGTGAGTTGTGATTGTTT+AGG - chr1.3:8239195-8239214 MS.gene51586:intron 30.0%
! TATTTTGTCATGCAATGCTT+TGG - chr1.3:8241650-8241669 MS.gene51586:intron 30.0%
! TCTTAAGTTAGTTTATCGGT+AGG + chr1.3:8239803-8239822 None:intergenic 30.0%
!! CCTAAAGGTGTTAATTTGTT+TGG - chr1.3:8240345-8240364 MS.gene51586:intron 30.0%
!! GTTTTGATATCCTGTTACTT+AGG - chr1.3:8239140-8239159 MS.gene51586:intron 30.0%
!! TAGCAAGGCATTGTATAAAA+TGG + chr1.3:8241567-8241586 None:intergenic 30.0%
!! TTCATTGATGATGGTAGTTT+GGG - chr1.3:8240967-8240986 MS.gene51586:intron 30.0%
!! TTTCATTGATGATGGTAGTT+TGG - chr1.3:8240966-8240985 MS.gene51586:intron 30.0%
!! TTTCCTCTTGTAGTTAGTTT+TGG - chr1.3:8241164-8241183 MS.gene51586:CDS 30.0%
!!! ATACTTTTCTGTTTTTTGGC+AGG - chr1.3:8240219-8240238 MS.gene51586:intron 30.0%
!!! ATTACTTTTCTAAAACCAGC+TGG + chr1.3:8241403-8241422 None:intergenic 30.0%
!!! GTTGATGGTGATTTTTTAAC+TGG - chr1.3:8239572-8239591 MS.gene51586:intron 30.0%
!!! TATGTGGTTTTGTTCTCTAT+AGG - chr1.3:8239249-8239268 MS.gene51586:CDS 30.0%
!!! TTCCTCTTGTAGTTAGTTTT+GGG - chr1.3:8241165-8241184 MS.gene51586:CDS 30.0%
AAACCATAATTGACAGCAAG+GGG + chr1.3:8238814-8238833 None:intergenic 35.0%
AACTATTGTTGAGGAATTCC+TGG - chr1.3:8241135-8241154 MS.gene51586:CDS 35.0%
ACAAAGACATTGAACACGAT+AGG + chr1.3:8241986-8242005 None:intergenic 35.0%
ACTATTGTTGAGGAATTCCT+GGG - chr1.3:8241136-8241155 MS.gene51586:CDS 35.0%
ACTTGAATACTGAAGCAGAA+AGG - chr1.3:8241369-8241388 MS.gene51586:intron 35.0%
AGTATCTTCCAAATACTCTG+CGG - chr1.3:8240519-8240538 MS.gene51586:CDS 35.0%
CAAATGTGATAGGATGATGA+TGG - chr1.3:8240627-8240646 MS.gene51586:intron 35.0%
CACCATCAACATTCATGTAA+GGG + chr1.3:8239562-8239581 None:intergenic 35.0%
CAGAAGATTCCTTTACTCAT+AGG - chr1.3:8240065-8240084 MS.gene51586:intron 35.0%
CTTTGTTAATACGGGTGTTT+AGG - chr1.3:8242000-8242019 MS.gene51586:CDS 35.0%
GAAACTGTATTGTGTGAGTA+AGG - chr1.3:8239288-8239307 MS.gene51586:CDS 35.0%
GAAGATACTGCACATTCATA+GGG + chr1.3:8240508-8240527 None:intergenic 35.0%
GGAATTCCTCAACAATAGTT+AGG + chr1.3:8241135-8241154 None:intergenic 35.0%
GGTTGCAATTCCAAATTCTT+GGG + chr1.3:8238607-8238626 None:intergenic 35.0%
GTTGCAATTCCAAATTCTTG+GGG + chr1.3:8238606-8238625 None:intergenic 35.0%
TACAGGTCTTGATGTTGAAA+TGG - chr1.3:8240102-8240121 MS.gene51586:intron 35.0%
TAGGTTCCTAACTATTGTTG+AGG - chr1.3:8241126-8241145 MS.gene51586:CDS 35.0%
TCACCATCAACATTCATGTA+AGG + chr1.3:8239563-8239582 None:intergenic 35.0%
TCAGTATTCAAGTCACCAAA+AGG + chr1.3:8241362-8241381 None:intergenic 35.0%
TTAGGTGAGGAGATAATATC+AGG - chr1.3:8241801-8241820 MS.gene51586:CDS 35.0%
! CCATAAAAGCTGAAGCTTTT+GGG - chr1.3:8241741-8241760 MS.gene51586:CDS 35.0%
! GAGTAATGATTTTGCTTTGC+AGG - chr1.3:8241316-8241335 MS.gene51586:intron 35.0%
! GCACGCAATTAATCATGTTT+TGG - chr1.3:8241687-8241706 MS.gene51586:intron 35.0%
! TAAAATGGTCTTACAGCCAA+CGG + chr1.3:8241552-8241571 None:intergenic 35.0%
! TATAGGTTGAAATCCAAGTG+AGG - chr1.3:8239266-8239285 MS.gene51586:CDS 35.0%
! TATCCACATGCCTGAATTTT+TGG - chr1.3:8241833-8241852 MS.gene51586:CDS 35.0%
! TCCATAAAAGCTGAAGCTTT+TGG - chr1.3:8241740-8241759 MS.gene51586:CDS 35.0%
! TCTTTTGATGTCTTCATTCG+AGG - chr1.3:8241609-8241628 MS.gene51586:intron 35.0%
! TTTGCGTTTGAAATTGTCGA+GGG - chr1.3:8240178-8240197 MS.gene51586:intron 35.0%
! TTTTGTAAAATTGAGAGGGG+TGG - chr1.3:8240686-8240705 MS.gene51586:intron 35.0%
!! CTGCTTACATTGATTCTTTC+AGG - chr1.3:8241898-8241917 MS.gene51586:CDS 35.0%
!! TCATTGATGATGGTAGTTTG+GGG - chr1.3:8240968-8240987 MS.gene51586:intron 35.0%
!! TGAGATTCTGAAGTTGACAT+TGG + chr1.3:8238655-8238674 None:intergenic 35.0%
!! TGGAAAATTCCTTGATTTGC+TGG + chr1.3:8239672-8239691 None:intergenic 35.0%
!! TTTGTTTCTGATGACAGTGT+CGG + chr1.3:8238682-8238701 None:intergenic 35.0%
!!! TGTAGTTAGTTTTGGGAGTT+TGG - chr1.3:8241172-8241191 MS.gene51586:CDS 35.0%
!!! TTCTGTTTTTTGGCAGGTTA+TGG - chr1.3:8240225-8240244 MS.gene51586:intron 35.0%
AACCATAATTGACAGCAAGG+GGG + chr1.3:8238813-8238832 None:intergenic 40.0%
AAGTTGACATTGGAGGTTTC+CGG + chr1.3:8238645-8238664 None:intergenic 40.0%
ACTGAAGCAGAAAGGAAACT+AGG - chr1.3:8241377-8241396 MS.gene51586:intron 40.0%
ATCAAAACCAACCTGTTGTG+AGG + chr1.3:8239128-8239147 None:intergenic 40.0%
ATCATTGAGAGCCTCAACTT+CGG + chr1.3:8238870-8238889 None:intergenic 40.0%
ATTAAACGGCAGAGTAGGAA+TGG + chr1.3:8239314-8239333 None:intergenic 40.0%
CAACATCGACAATAGACTCA+CGG + chr1.3:8239066-8239085 None:intergenic 40.0%
CACAATACAGTTTCCTCACT+TGG + chr1.3:8239282-8239301 None:intergenic 40.0%
CAGAGTTCTATATCCTTCAC+CGG - chr1.3:8241523-8241542 MS.gene51586:CDS 40.0%
CAGCACCAATCTCAAAAACA+CGG + chr1.3:8240036-8240055 None:intergenic 40.0%
CTACAATCAAGATGAGAGTG+TGG - chr1.3:8239435-8239454 MS.gene51586:CDS 40.0%
CTAGATCCAGCAATCAACTT+AGG + chr1.3:8239908-8239927 None:intergenic 40.0%
CTATTGTTGAGGAATTCCTG+GGG - chr1.3:8241137-8241156 MS.gene51586:CDS 40.0%
CTCCCAAAACTAACTACAAG+AGG + chr1.3:8241170-8241189 None:intergenic 40.0%
CTCCCTTACATGAATGTTGA+TGG - chr1.3:8239557-8239576 MS.gene51586:intron 40.0%
CTTCCAAAAATTCAGGCATG+TGG + chr1.3:8241839-8241858 None:intergenic 40.0%
GAAAATGTACTTGGGTAGAC+AGG - chr1.3:8240887-8240906 MS.gene51586:CDS 40.0%
GACAGGGATAAAAGACGTAA+AGG + chr1.3:8240664-8240683 None:intergenic 40.0%
GACATTTGCTTGTGAAGTTG+AGG + chr1.3:8239995-8240014 None:intergenic 40.0%
GAGTCTATTGTCGATGTTGA+AGG - chr1.3:8239067-8239086 MS.gene51586:intron 40.0%
GCACGTTCTTCCAAAAATTC+AGG + chr1.3:8241846-8241865 None:intergenic 40.0%
GCAGCATCCTCGATATTAAA+CGG + chr1.3:8239328-8239347 None:intergenic 40.0%
GGAAGATACTGCACATTCAT+AGG + chr1.3:8240509-8240528 None:intergenic 40.0%
GGGTTGCAATTCCAAATTCT+TGG + chr1.3:8238608-8238627 None:intergenic 40.0%
TACAAGAGGAAAAATACCCC+AGG + chr1.3:8241156-8241175 None:intergenic 40.0%
TATTGTCGATGTTGAAGGTG+TGG - chr1.3:8239072-8239091 MS.gene51586:intron 40.0%
TCGATATTAAACGGCAGAGT+AGG + chr1.3:8239319-8239338 None:intergenic 40.0%
TCTTTAGGCTGGACTACAAA+GGG - chr1.3:8239945-8239964 MS.gene51586:intron 40.0%
TGAAATTGAGAAGGCCATTC+AGG - chr1.3:8239360-8239379 MS.gene51586:intron 40.0%
TTACAGTTCCAACTTGAGAC+TGG + chr1.3:8239698-8239717 None:intergenic 40.0%
TTGATTGCTGGATCTAGTGA+GGG - chr1.3:8239911-8239930 MS.gene51586:intron 40.0%
! AAAATGGTCTTACAGCCAAC+GGG + chr1.3:8241551-8241570 None:intergenic 40.0%
! AACACCTTTAGGGGTTCAAA+CGG + chr1.3:8240337-8240356 None:intergenic 40.0%
! ACAACTTGTTCGTGTGAATC+AGG - chr1.3:8239608-8239627 MS.gene51586:intron 40.0%
! ATGCATTTTGCGGTGTGATA+CGG - chr1.3:8239824-8239843 MS.gene51586:intron 40.0%
! CCCAAAAGCTTCAGCTTTTA+TGG + chr1.3:8241744-8241763 None:intergenic 40.0%
! CTATGCAATCCTTGTTGCTT+AGG - chr1.3:8241783-8241802 MS.gene51586:CDS 40.0%
! GATTTTGCTTTGCAGGAAGT+TGG - chr1.3:8241323-8241342 MS.gene51586:intron 40.0%
! GGAGTAGAGATTGAACCTTT+TGG - chr1.3:8241344-8241363 MS.gene51586:intron 40.0%
! GTTGCTGCTTGTAAGTTTGT+TGG - chr1.3:8239769-8239788 MS.gene51586:intron 40.0%
! GTTTGCGTTTGAAATTGTCG+AGG - chr1.3:8240177-8240196 MS.gene51586:intron 40.0%
! TACTCTGCCGTTTAATATCG+AGG - chr1.3:8239318-8239337 MS.gene51586:intron 40.0%
! TATGTAAGCCGCAGAGTATT+TGG + chr1.3:8240530-8240549 None:intergenic 40.0%
! TGTTGTGAGGCACCTTTAAT+AGG + chr1.3:8239115-8239134 None:intergenic 40.0%
!! AGAAGGTATTCAGATGCTCA+AGG - chr1.3:8240553-8240572 MS.gene51586:CDS 40.0%
!! ATGTGATAGGATGATGATGG+CGG - chr1.3:8240630-8240649 MS.gene51586:intron 40.0%
!! GATTCTGAAGTTGACATTGG+AGG + chr1.3:8238652-8238671 None:intergenic 40.0%
!! TAGTTTGGGTTGTCATAGCA+AGG + chr1.3:8241582-8241601 None:intergenic 40.0%
!! TATTAAAGGTGCCTCACAAC+AGG - chr1.3:8239114-8239133 MS.gene51586:intron 40.0%
!! TGGAAGTTTAAGCACTGGTA+GGG - chr1.3:8240706-8240725 MS.gene51586:CDS 40.0%
!!! ATTTTTTAACTGGTGCAGGC+TGG - chr1.3:8239582-8239601 MS.gene51586:intron 40.0%
!!! GGTGATTTTTTAACTGGTGC+AGG - chr1.3:8239578-8239597 MS.gene51586:intron 40.0%
AACCCTAGCAATACCTTCTC+CGG - chr1.3:8238623-8238642 MS.gene51586:CDS 45.0%
AAGCAAAAAGGCCTCCAAGA+AGG - chr1.3:8238702-8238721 MS.gene51586:CDS 45.0%
AATGCCATCTTCTTCCCAAC+TGG + chr1.3:8238944-8238963 None:intergenic 45.0%
AGATATGGTGTACCACCACA+CGG - chr1.3:8242107-8242126 MS.gene51586:CDS 45.0%
ATAACCAGAGCTCAGCAAGA+GGG + chr1.3:8242030-8242049 None:intergenic 45.0%
ATCTCCTCACCTAAGCAACA+AGG + chr1.3:8241795-8241814 None:intergenic 45.0%
ATCTGCGGACTCACTAAATC+AGG + chr1.3:8239019-8239038 None:intergenic 45.0%
ATTCCAGCCGCTCCTATTAA+AGG - chr1.3:8239100-8239119 MS.gene51586:intron 45.0%
CACAAGCTATTCGACCAGTT+GGG - chr1.3:8238927-8238946 MS.gene51586:CDS 45.0%
CAGCAATCAACTTAGGAGTG+TGG + chr1.3:8239901-8239920 None:intergenic 45.0%
CATGTAAGGGAGACAAGTTC+CGG + chr1.3:8239549-8239568 None:intergenic 45.0%
CGTGTAGTAATGCTCTTCTG+TGG - chr1.3:8242152-8242171 MS.gene51586:CDS 45.0%
CTGCGGCTTACATATGAAGA+AGG - chr1.3:8240536-8240555 MS.gene51586:CDS 45.0%
GCACAGATGCCTATGAGTAA+AGG + chr1.3:8240077-8240096 None:intergenic 45.0%
GTCTTTAGGCTGGACTACAA+AGG - chr1.3:8239944-8239963 MS.gene51586:intron 45.0%
GTTGATTGCTGGATCTAGTG+AGG - chr1.3:8239910-8239929 MS.gene51586:intron 45.0%
TAAGAAGGATCTCGAAGCTG+TGG - chr1.3:8240300-8240319 MS.gene51586:intron 45.0%
TATAACCAGAGCTCAGCAAG+AGG + chr1.3:8242031-8242050 None:intergenic 45.0%
TCATTACTCGCTGCAAGACA+AGG + chr1.3:8241305-8241324 None:intergenic 45.0%
TGAGGCTCTCAATGATTCAC+TGG - chr1.3:8238874-8238893 MS.gene51586:intron 45.0%
TGATTCACTGGAGAACAAGC+AGG - chr1.3:8238886-8238905 MS.gene51586:intron 45.0%
TGATTTAGTGAGTCCGCAGA+TGG - chr1.3:8239018-8239037 MS.gene51586:intron 45.0%
TTCCAACTTGAGACTGGATG+TGG + chr1.3:8239692-8239711 None:intergenic 45.0%
TTCCACATCCAGTCTCAAGT+TGG - chr1.3:8239687-8239706 MS.gene51586:intron 45.0%
TTTAATAGGAGCGGCTGGAA+TGG + chr1.3:8239101-8239120 None:intergenic 45.0%
! AACAAGCAGGTTCTAATCCG+TGG - chr1.3:8238899-8238918 MS.gene51586:intron 45.0%
! ACAAGCAGGTTCTAATCCGT+GGG - chr1.3:8238900-8238919 MS.gene51586:intron 45.0%
! ACACCTTTAGGGGTTCAAAC+GGG + chr1.3:8240336-8240355 None:intergenic 45.0%
! CAATCCTTGTTGCTTAGGTG+AGG - chr1.3:8241788-8241807 MS.gene51586:CDS 45.0%
! TGAGGCACCTTTAATAGGAG+CGG + chr1.3:8239110-8239129 None:intergenic 45.0%
!! CACACTCCTAAGTTGATTGC+TGG - chr1.3:8239899-8239918 MS.gene51586:intron 45.0%
!! GTGGAAGTTTAAGCACTGGT+AGG - chr1.3:8240705-8240724 MS.gene51586:CDS 45.0%
!! TTCCGGAGAAGGTATTGCTA+GGG + chr1.3:8238628-8238647 None:intergenic 45.0%
!! TTTCCGGAGAAGGTATTGCT+AGG + chr1.3:8238629-8238648 None:intergenic 45.0%
!!! CTTCGCCGTGTTTTTGAGAT+TGG - chr1.3:8240028-8240047 MS.gene51586:intron 45.0%
AATAGACTCACGGCTGAGAG+CGG + chr1.3:8239056-8239075 None:intergenic 50.0%
ACATTGGAGGTTTCCGGAGA+AGG + chr1.3:8238639-8238658 None:intergenic 50.0%
AGAAAGGAAACTAGGCCAGC+TGG - chr1.3:8241385-8241404 MS.gene51586:intron 50.0%
AGAGAGAGTCGATGTAGCAG+AGG + chr1.3:8238779-8238798 None:intergenic 50.0%
AGGCATCTGTGCGAGTTTAC+AGG - chr1.3:8240085-8240104 MS.gene51586:intron 50.0%
AGGGGTGGAAGTTTAAGCAC+TGG - chr1.3:8240701-8240720 MS.gene51586:CDS 50.0%
ATTGCTGGATCTAGTGAGGG+TGG - chr1.3:8239914-8239933 MS.gene51586:intron 50.0%
CAAGAAGGAACTCGCAAAGC+TGG - chr1.3:8238717-8238736 MS.gene51586:intron 50.0%
CAGCTTTGCGAGTTCCTTCT+TGG + chr1.3:8238719-8238738 None:intergenic 50.0%
CTGCGAACACCAGCAAATCA+AGG - chr1.3:8239660-8239679 MS.gene51586:intron 50.0%
CTTTGCGAGTTCCTTCTTGG+AGG + chr1.3:8238716-8238735 None:intergenic 50.0%
GAAGAACGTGCACAAGCTTG+CGG - chr1.3:8241855-8241874 MS.gene51586:CDS 50.0%
GCACAAGCTATTCGACCAGT+TGG - chr1.3:8238926-8238945 MS.gene51586:CDS 50.0%
GCGGCAAATTTCACCATCTG+CGG + chr1.3:8239034-8239053 None:intergenic 50.0%
GTACCCGTTTGAACCCCTAA+AGG - chr1.3:8240330-8240349 MS.gene51586:intron 50.0%
TAACCAGAGCTCAGCAAGAG+GGG + chr1.3:8242029-8242048 None:intergenic 50.0%
TCGACCAGTTGGGAAGAAGA+TGG - chr1.3:8238937-8238956 MS.gene51586:CDS 50.0%
TGGTTTCACCGTACAGTGCT+TGG - chr1.3:8238982-8239001 MS.gene51586:CDS 50.0%
TTGCGGTGTGATACGGTGTT+GGG - chr1.3:8239831-8239850 MS.gene51586:intron 50.0%
TTTGCGGTGTGATACGGTGT+TGG - chr1.3:8239830-8239849 MS.gene51586:intron 50.0%
! GACCCCCTTGCTGTCAATTA+TGG - chr1.3:8238808-8238827 MS.gene51586:intron 50.0%
! TGCCTGAACCAAGCACTGTA+CGG + chr1.3:8238993-8239012 None:intergenic 50.0%
! TTTTTCCACGTGACCCACTC+AGG - chr1.3:8242201-8242220 MS.gene51586:CDS 50.0%
!! AAAGGTGCCTCACAACAGGT+TGG - chr1.3:8239118-8239137 MS.gene51586:intron 50.0%
!! CTTGATTTGCTGGTGTTCGC+AGG + chr1.3:8239662-8239681 None:intergenic 50.0%
AGGGTGGAGCTGCTGTCTTT+AGG - chr1.3:8239930-8239949 MS.gene51586:intron 55.0%
AGTCGATGTAGCAGAGGTGG+CGG + chr1.3:8238773-8238792 None:intergenic 55.0%
CAAAGGGAAACCTGCATGCC+TGG - chr1.3:8239961-8239980 MS.gene51586:intron 55.0%
CAACTTCGGTCCAGTCGTCA+GGG + chr1.3:8238856-8238875 None:intergenic 55.0%
CACCGTACAGTGCTTGGTTC+AGG - chr1.3:8238988-8239007 MS.gene51586:CDS 55.0%
GAAGTTGAGGTGACTGAGCC+AGG + chr1.3:8239982-8240001 None:intergenic 55.0%
GAGAGTCGATGTAGCAGAGG+TGG + chr1.3:8238776-8238795 None:intergenic 55.0%
GCACCTTTAATAGGAGCGGC+TGG + chr1.3:8239106-8239125 None:intergenic 55.0%
GTCTTACAGCCAACGGGTAC+CGG + chr1.3:8241545-8241564 None:intergenic 55.0%
TATCCTTCACCGGTACCCGT+TGG - chr1.3:8241533-8241552 MS.gene51586:CDS 55.0%
TATGGTGTACCACCACACGG+TGG - chr1.3:8242110-8242129 MS.gene51586:CDS 55.0%
TCAACTTCGGTCCAGTCGTC+AGG + chr1.3:8238857-8238876 None:intergenic 55.0%
TCATTGAGCTCCCTGACGAC+TGG - chr1.3:8238843-8238862 MS.gene51586:intron 55.0%
TCGTCAGGGAGCTCAATGAG+CGG + chr1.3:8238842-8238861 None:intergenic 55.0%
TGACGACTGGACCGAAGTTG+AGG - chr1.3:8238856-8238875 MS.gene51586:intron 55.0%
TGCACAAGCTTGCGGCATTG+AGG - chr1.3:8241863-8241882 MS.gene51586:CDS 55.0%
TGGAGCTGCTGTCTTTAGGC+TGG - chr1.3:8239934-8239953 MS.gene51586:intron 55.0%
! AGCAGGTTCTAATCCGTGGG+AGG - chr1.3:8238903-8238922 MS.gene51586:intron 55.0%
! GAATAGCTTGTGCCCTCCCA+CGG + chr1.3:8238919-8238938 None:intergenic 55.0%
! GCAGGTTCTAATCCGTGGGA+GGG - chr1.3:8238904-8238923 MS.gene51586:intron 55.0%
! GGTGTGATACGGTGTTGGGT+AGG - chr1.3:8239835-8239854 MS.gene51586:intron 55.0%
ACTCCAAAGCCACCGTGTGG+TGG + chr1.3:8242122-8242141 None:intergenic 60.0%
CCTACTCCAAAGCCACCGTG+TGG + chr1.3:8242125-8242144 None:intergenic 60.0%
CGTCAGGGAGCTCAATGAGC+GGG + chr1.3:8238841-8238860 None:intergenic 60.0%
GCAATCCTGAGTGGGTCACG+TGG + chr1.3:8242209-8242228 None:intergenic 60.0%
GTACCACCACACGGTGGCTT+TGG - chr1.3:8242116-8242135 MS.gene51586:CDS 60.0%
!! CCACACGGTGGCTTTGGAGT+AGG - chr1.3:8242122-8242141 MS.gene51586:CDS 60.0%
!! CGGTGGCTTTGGAGTAGGCT+TGG - chr1.3:8242127-8242146 MS.gene51586:CDS 60.0%
AGACTCACGGCTGAGAGCGG+CGG + chr1.3:8239053-8239072 None:intergenic 65.0%
CTGCCCCTCTTGCTGAGCTC+TGG - chr1.3:8242023-8242042 MS.gene51586:CDS 65.0%
GGTGACTGAGCCAGGCATGC+AGG + chr1.3:8239974-8239993 None:intergenic 65.0%
! AGGTGGCGGCGGCAACTTCT+CGG + chr1.3:8238759-8238778 None:intergenic 65.0%
! CGATGTAGCAGAGGTGGCGG+CGG + chr1.3:8238770-8238789 None:intergenic 65.0%
!! CAGCCAACGGGTACCGGTGA+AGG + chr1.3:8241539-8241558 None:intergenic 65.0%
TGGCGGCGGCAACTTCTCGG+CGG + chr1.3:8238756-8238775 None:intergenic 70.0%
CGGCGGCAACTTCTCGGCGG+CGG + chr1.3:8238753-8238772 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 8238599 8242235 8238599 ID=MS.gene51586
chr1.3 mRNA 8238599 8242235 8238599 ID=MS.gene51586.t1;Parent=MS.gene51586
chr1.3 exon 8241699 8242235 8241699 ID=MS.gene51586.t1.exon1;Parent=MS.gene51586.t1
chr1.3 CDS 8241699 8242235 8241699 ID=cds.MS.gene51586.t1;Parent=MS.gene51586.t1
chr1.3 exon 8241453 8241563 8241453 ID=MS.gene51586.t1.exon2;Parent=MS.gene51586.t1
chr1.3 CDS 8241453 8241563 8241453 ID=cds.MS.gene51586.t1;Parent=MS.gene51586.t1
chr1.3 exon 8241121 8241234 8241121 ID=MS.gene51586.t1.exon3;Parent=MS.gene51586.t1
chr1.3 CDS 8241121 8241234 8241121 ID=cds.MS.gene51586.t1;Parent=MS.gene51586.t1
chr1.3 exon 8240687 8240977 8240687 ID=MS.gene51586.t1.exon4;Parent=MS.gene51586.t1
chr1.3 CDS 8240687 8240977 8240687 ID=cds.MS.gene51586.t1;Parent=MS.gene51586.t1
chr1.3 exon 8240483 8240593 8240483 ID=MS.gene51586.t1.exon5;Parent=MS.gene51586.t1
chr1.3 CDS 8240483 8240593 8240483 ID=cds.MS.gene51586.t1;Parent=MS.gene51586.t1
chr1.3 exon 8240260 8240313 8240260 ID=MS.gene51586.t1.exon6;Parent=MS.gene51586.t1
chr1.3 CDS 8240260 8240313 8240260 ID=cds.MS.gene51586.t1;Parent=MS.gene51586.t1
chr1.3 exon 8239417 8239496 8239417 ID=MS.gene51586.t1.exon7;Parent=MS.gene51586.t1
chr1.3 CDS 8239417 8239496 8239417 ID=cds.MS.gene51586.t1;Parent=MS.gene51586.t1
chr1.3 exon 8239204 8239319 8239204 ID=MS.gene51586.t1.exon8;Parent=MS.gene51586.t1
chr1.3 CDS 8239204 8239319 8239204 ID=cds.MS.gene51586.t1;Parent=MS.gene51586.t1
chr1.3 exon 8238915 8239029 8238915 ID=MS.gene51586.t1.exon9;Parent=MS.gene51586.t1
chr1.3 CDS 8238915 8239029 8238915 ID=cds.MS.gene51586.t1;Parent=MS.gene51586.t1
chr1.3 exon 8238599 8238725 8238599 ID=MS.gene51586.t1.exon10;Parent=MS.gene51586.t1
chr1.3 CDS 8238599 8238725 8238599 ID=cds.MS.gene51586.t1;Parent=MS.gene51586.t1
Gene Sequence

>MS.gene51586

ATGTCCCCAAGAATTTGGAATTGCAACCCTAGCAATACCTTCTCCGGAAACCTCCAATGTCAACTTCAGAATCTCAAGAGCCGACACTGTCATCAGAAACAAAAAGCAAAAAGGCCTCCAAGAAGGAACTCGCAAAGCTGGAAAAGCAACGCCGCCGCCGAGAAGTTGCCGCCGCCACCTCTGCTACATCGACTCTCTCTGTTGAAGATGACCCCCTTGCTGTCAATTATGGTTTTTTTCCCGCTCATTGAGCTCCCTGACGACTGGACCGAAGTTGAGGCTCTCAATGATTCACTGGAGAACAAGCAGGTTCTAATCCGTGGGAGGGCACAAGCTATTCGACCAGTTGGGAAGAAGATGGCATTCTTAGTCATCAGAGAAAATGGTTTCACCGTACAGTGCTTGGTTCAGGCACAACCTGATTTAGTGAGTCCGCAGATGGTGAAATTTGCCGCCGCTCTCAGCCGTGAGTCTATTGTCGATGTTGAAGGTGTGGTTTCCATTCCAGCCGCTCCTATTAAAGGTGCCTCACAACAGGTTGGTTTTGATATCCTGTTACTTAGGTTTTGTGATTTTGTCGTGTTTTGAATTTAGAGTTTGTGAGTTGTGATTGTTTAGGATTTTGATTTTGATTTTGATTATAATGGTGTTATGTGGTTTTGTTCTCTATAGGTTGAAATCCAAGTGAGGAAACTGTATTGTGTGAGTAAGGCCATTCCTACTCTGCCGTTTAATATCGAGGATGCTGCTCGAAGTGAAGTTGAAATTGAGAAGGCCATTCAGGTATATATATCCATTACCGATTAGAAATGTTGTAATTGAAGTTGTAGCAAACACTACAATCAAGATGAGAGTGTGGTGTTTCAGCTGCAATTACTATCTTGCATGTCGCAGTTTAAAACCTTTCTGATTAAAGATGTGTGTTTGTTGTTGTTTTGTTTAATATACCGGAACTTGTCTCCCTTACATGAATGTTGATGGTGATTTTTTAACTGGTGCAGGCTGGTGAACAACTTGTTCGTGTGAATCAGGATACACGATTGAATTTTAGAGTACTTGACCTGCGAACACCAGCAAATCAAGGAATTTTCCACATCCAGTCTCAAGTTGGAACTGTAAAGCCTATTTTCTCTAATATTATTCTGACAAGTTTTTTTTTATTTAATCATAGTTGCTGCTTGTAAGTTTGTTGGAATAATTGCCTACCGATAAACTAACTTAAGAAATGCATTTTGCGGTGTGATACGGTGTTGGGTAGGCGTTCAGACAATTTTTATTAGCTGAAAGCTTTGTTGAAATCCACACTCCTAAGTTGATTGCTGGATCTAGTGAGGGTGGAGCTGCTGTCTTTAGGCTGGACTACAAAGGGAAACCTGCATGCCTGGCTCAGTCACCTCAACTTCACAAGCAAATGTCAATATTTGGTGATCTTCGCCGTGTTTTTGAGATTGGTGCTGTGTATAGAGCAGAAGATTCCTTTACTCATAGGCATCTGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATTAAGAAACATTATTATGAGGTACATTTGGCTAAATGAAAATTTTGAGTGTTTGCGTTTGAAATTGTCGAGGGACATAATATGATTTACTGATACTTTTCTGTTTTTTGGCAGGTTATGGATGTAGTTGACAAATTGTTTGTTGCTATGTTTGACACTTTGAACACAAAATGTAAGAAGGATCTCGAAGCTGTGGCAAATCAGTACCCGTTTGAACCCCTAAAGGTGTTAATTTGTTTGGGATTTGTTATTTATTATACTATCTGTTTCATATTGTTCAATTTATTTGTTTGTAGTGGGTATATCATGTTTATTTGTGCAATATACTAATATTAGACGCAAATGAATGCATTGTTACATTTTGTGATCTGATTATATCCCTATGAATGTGCAGTATCTTCCAAATACTCTGCGGCTTACATATGAAGAAGGTATTCAGATGCTCAAGGTAAGCTTAAATATTTCTTAACTAATTAACTTGCAAGTTGTCGATAAACAAACAAATGTGATAGGATGATGATGGCGGTGCTTGAACCTTTACGTCTTTTATCCCTGTCTATTTTGTAAAATTGAGAGGGGTGGAAGTTTAAGCACTGGTAGGGACTAGCCTGTGTACAGTTTAATCTTATAGATTATCATACTGAATATTCTCTCTCACCAATCCTGTAGTAAAGTTTAAAATTATGTAATAGTCAAATTATTGAAACTATATTATATAAATGTCATTGAAAGGTGATAGTGATACATAATGTAAATTGATGAAAATGTACTTGGGTAGACAGGATACTAGAACTAATGTCAGCTTAAGATTGTCCATAAAATGAGATCTCATTTAGTCATTTCATTGATGATGGTAGTTTGGGGAACAAATAAAAGCTTTACCCTCCAATTTTTGAAAATTCCAACCAAATAATTGTTACTATTGGGGAGCCTTTTCAATTTAATTCAAGAAAAGGACATATAGTTATTTGATTGGTGAGCAAGTTAGTGACACTTATTTAGGTTCCTAACTATTGTTGAGGAATTCCTGGGGTATTTTTCCTCTTGTAGTTAGTTTTGGGAGTTTGGTTGCACTGTTTAGAATCATTTACATCAAGACTCAGAAAAGGACTTATTCTACTGTAACTATGATATATATAAGATGGTAGAAATTTACAGTATTCTTGTCTTAGTATCCTTGTCTTGCAGCGAGTAATGATTTTGCTTTGCAGGAAGTTGGAGTAGAGATTGAACCTTTTGGTGACTTGAATACTGAAGCAGAAAGGAAACTAGGCCAGCTGGTTTTAGAAAAGTAATTCCCTGTCTCAAATCTTTTATAACTAAATATTGTCTTTTGTTATTATATGCTATAATTTAAAATTGTTTTTCGACTGTAATTCTATTTATAGGTATGGAACAGAGTTCTATATCCTTCACCGGTACCCGTTGGCTGTAAGACCATTTTATACAATGCCTTGCTATGACAACCCAAACTACAGTAACTCTTTTGATGTCTTCATTCGAGGTAAGCAGAGAAATTAAGTTATTTTGTCATGCAATGCTTTGGTATGACAATTTGGTGCACGCAATTAATCATGTTTTGGTTTTAACGCTTCTCCAAATTTGTTTGTACTTCCATAAAAGCTGAAGCTTTTGGGTGTCATTTGATTTTAACTTCTATGCAATCCTTGTTGCTTAGGTGAGGAGATAATATCAGGAGCTCAGCGTATCCACATGCCTGAATTTTTGGAAGAACGTGCACAAGCTTGCGGCATTGAGGTCAAGACAATATCTGCTTACATTGATTCTTTCAGGTAATATATTTACTTATTCCTATCTGCTTACATTGATTCTTTCAGGTAATATATTTACTTATTCCTATCGTGTTCAATGTCTTTGTTAATACGGGTGTTTAGGCTGCCCCTCTTGCTGAGCTCTGGTTATAATGATTTTATGGGGTAAAAGATTGCTTACCAGAAAACTAAATGATTGATCATTTACAGATATGGTGTACCACCACACGGTGGCTTTGGAGTAGGCTTGGAGCGTGTAGTAATGCTCTTCTGTGGCTTGAACAACATTCGCAAAACATCACTTTTTCCACGTGACCCACTCAGGATTGCACCATGA
Protein sequence

>MS.gene51586.t1

MSPRIWNCNPSNTFSGNLQCQLQNLKSRHCHQKQKAKRPPRRNSQSWKSNAAAEKLPPPPLLHRLSLLKMTPLLSIMVFFPLIELPDDWTEVEALNDSLENKQVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDLVSPQMVKFAAALSRESIVDVEGVVSIPAAPIKGASQQVEIQVRKLYCVSKAIPTLPFNIEDAARSEVEIEKAIQAGEQLVRVNQDTRLNFRVLDLRTPANQGIFHIQSQVGTAFRQFLLAESFVEIHTPKLIAGSSEGGAAVFRLDYKGKPACLAQSPQLHKQMSIFGDLRRVFEIGAVYRAEDSFTHRHLCEFTGLDVEMEIKKHYYEVMDVVDKLFVAMFDTLNTKCKKDLEAVANQYPFEPLKYLPNTLRLTYEEGIQMLKEVGVEIEPFGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCYDNPNYSNSFDVFIRGEEIISGAQRIHMPEFLEERAQACGIEVKTISAYIDSFRYGVPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPLRIAP