Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51549.t1 | XP_003588866.1 | 86.3 | 524 | 35 | 1 | 1 | 487 | 1 | 524 | 4.00E-248 | 867.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51549.t1 | Q9M084 | 62.7 | 483 | 133 | 3 | 52 | 487 | 59 | 541 | 9.3e-169 | 594.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51549.t1 | G7I885 | 86.3 | 524 | 35 | 1 | 1 | 487 | 1 | 524 | 2.9e-248 | 867.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene51549 | -0.834354 | 3.15E-56 | -1.69E-46 |
| MS.gene049378 | MS.gene51549 | -0.874293 | 7.56E-68 | -1.69E-46 |
| MS.gene049669 | MS.gene51549 | -0.828722 | 7.68E-55 | -1.69E-46 |
| MS.gene050201 | MS.gene51549 | -0.803648 | 3.15E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene51549 | -0.840149 | 1.03E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene51549 | -0.875816 | 2.29E-68 | -1.69E-46 |
| MS.gene050228 | MS.gene51549 | -0.862991 | 3.42E-64 | -1.69E-46 |
| MS.gene050303 | MS.gene51549 | -0.801108 | 1.05E-48 | -1.69E-46 |
| MS.gene050330 | MS.gene51549 | 0.8874 | 1.48E-72 | -1.69E-46 |
| MS.gene050442 | MS.gene51549 | -0.810622 | 1.05E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene51549 | 0.853364 | 2.51E-61 | -1.69E-46 |
| MS.gene050642 | MS.gene51549 | -0.833506 | 5.13E-56 | -1.69E-46 |
| MS.gene050680 | MS.gene51549 | -0.80982 | 1.57E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene51549 | -0.828425 | 9.05E-55 | -1.69E-46 |
| MS.gene050721 | MS.gene51549 | -0.829772 | 4.27E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene51549 | -0.820626 | 6.21E-53 | -1.69E-46 |
| MS.gene050750 | MS.gene51549 | -0.847972 | 8.24E-60 | -1.69E-46 |
| MS.gene050787 | MS.gene51549 | -0.822234 | 2.64E-53 | -1.69E-46 |
| MS.gene050820 | MS.gene51549 | -0.833866 | 4.17E-56 | -1.69E-46 |
| MS.gene050953 | MS.gene51549 | -0.8469 | 1.62E-59 | -1.69E-46 |
| MS.gene05119 | MS.gene51549 | 0.834888 | 2.31E-56 | -1.69E-46 |
| MS.gene051265 | MS.gene51549 | -0.810016 | 1.42E-50 | -1.69E-46 |
| MS.gene051924 | MS.gene51549 | 0.812907 | 3.35E-51 | -1.69E-46 |
| MS.gene051926 | MS.gene51549 | 0.828661 | 7.94E-55 | -1.69E-46 |
| MS.gene051935 | MS.gene51549 | -0.806657 | 7.39E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene51549 | -0.846758 | 1.78E-59 | -1.69E-46 |
| MS.gene052011 | MS.gene51549 | 0.804768 | 1.84E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene51549 | -0.821112 | 4.80E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene51549 | -0.886669 | 2.80E-72 | -1.69E-46 |
| MS.gene052190 | MS.gene51549 | -0.840362 | 9.10E-58 | -1.69E-46 |
| MS.gene052302 | MS.gene51549 | -0.801606 | 8.32E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene51549 | 0.885054 | 1.13E-71 | -1.69E-46 |
| MS.gene052333 | MS.gene51549 | -0.818679 | 1.73E-52 | -1.69E-46 |
| MS.gene052358 | MS.gene51549 | 0.908099 | 2.47E-81 | -1.69E-46 |
| MS.gene052361 | MS.gene51549 | 0.869898 | 2.19E-66 | -1.69E-46 |
| MS.gene052376 | MS.gene51549 | -0.814988 | 1.16E-51 | -1.69E-46 |
| MS.gene052384 | MS.gene51549 | -0.804562 | 2.04E-49 | -1.69E-46 |
| MS.gene052389 | MS.gene51549 | -0.841421 | 4.80E-58 | -1.69E-46 |
| MS.gene053054 | MS.gene51549 | 0.861992 | 6.95E-64 | -1.69E-46 |
| MS.gene053166 | MS.gene51549 | -0.8171 | 3.93E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene51549 | -0.809267 | 2.06E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene51549 | -0.815364 | 9.60E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene51549 | 0.845928 | 2.99E-59 | -1.69E-46 |
| MS.gene054405 | MS.gene51549 | -0.839799 | 1.28E-57 | -1.69E-46 |
| MS.gene054468 | MS.gene51549 | -0.84637 | 2.27E-59 | -1.69E-46 |
| MS.gene054559 | MS.gene51549 | -0.806561 | 7.75E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene51549 | -0.837603 | 4.72E-57 | -1.69E-46 |
| MS.gene054983 | MS.gene51549 | -0.814142 | 1.79E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene51549 | -0.8162 | 6.25E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene51549 | -0.808749 | 2.66E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene51549 | -0.821959 | 3.06E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene51549 | -0.856275 | 3.59E-62 | -1.69E-46 |
| MS.gene055818 | MS.gene51549 | -0.831172 | 1.94E-55 | -1.69E-46 |
| MS.gene056069 | MS.gene51549 | 0.805831 | 1.10E-49 | -1.69E-46 |
| MS.gene056087 | MS.gene51549 | -0.835309 | 1.81E-56 | -1.69E-46 |
| MS.gene056506 | MS.gene51549 | -0.855371 | 6.60E-62 | -1.69E-46 |
| MS.gene056979 | MS.gene51549 | -0.843393 | 1.44E-58 | -1.69E-46 |
| MS.gene057026 | MS.gene51549 | -0.871649 | 5.82E-67 | -1.69E-46 |
| MS.gene057060 | MS.gene51549 | -0.819887 | 9.17E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene51549 | -0.811658 | 6.27E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene51549 | -0.812022 | 5.23E-51 | -1.69E-46 |
| MS.gene058139 | MS.gene51549 | -0.869969 | 2.08E-66 | -1.69E-46 |
| MS.gene058399 | MS.gene51549 | -0.809657 | 1.70E-50 | -1.69E-46 |
| MS.gene059247 | MS.gene51549 | -0.80788 | 4.07E-50 | -1.69E-46 |
| MS.gene059249 | MS.gene51549 | -0.809679 | 1.68E-50 | -1.69E-46 |
| MS.gene059789 | MS.gene51549 | -0.850314 | 1.84E-60 | -1.69E-46 |
| MS.gene060137 | MS.gene51549 | 0.806777 | 6.98E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene51549 | -0.832551 | 8.86E-56 | -1.69E-46 |
| MS.gene060553 | MS.gene51549 | -0.804456 | 2.14E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene51549 | -0.880353 | 5.89E-70 | -1.69E-46 |
| MS.gene060634 | MS.gene51549 | 0.814056 | 1.87E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene51549 | -0.812566 | 3.97E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene51549 | -0.815313 | 9.86E-52 | -1.69E-46 |
| MS.gene060879 | MS.gene51549 | -0.831923 | 1.27E-55 | -1.69E-46 |
| MS.gene060942 | MS.gene51549 | -0.807681 | 4.49E-50 | -1.69E-46 |
| MS.gene061040 | MS.gene51549 | 0.895488 | 9.14E-76 | -1.69E-46 |
| MS.gene061114 | MS.gene51549 | 0.865436 | 5.91E-65 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51549.t1 | MTR_1g014140 | 91.031 | 524 | 10 | 1 | 1 | 487 | 1 | 524 | 0.0 | 967 |
| MS.gene51549.t1 | MTR_5g028360 | 64.962 | 528 | 127 | 5 | 1 | 487 | 62 | 572 | 0.0 | 657 |
| MS.gene51549.t1 | MTR_8g102050 | 28.302 | 265 | 135 | 7 | 271 | 486 | 275 | 533 | 5.37e-20 | 93.6 |
| MS.gene51549.t1 | MTR_7g101050 | 28.947 | 266 | 134 | 10 | 271 | 486 | 298 | 558 | 1.95e-18 | 88.6 |
| MS.gene51549.t1 | MTR_4g052070 | 27.703 | 296 | 162 | 12 | 92 | 356 | 72 | 346 | 6.33e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51549.t1 | AT4G31180 | 59.815 | 540 | 162 | 5 | 3 | 487 | 2 | 541 | 0.0 | 628 |
| MS.gene51549.t1 | AT4G31180 | 59.815 | 540 | 162 | 5 | 3 | 487 | 2 | 541 | 0.0 | 628 |
| MS.gene51549.t1 | AT4G26870 | 62.048 | 498 | 146 | 5 | 28 | 487 | 23 | 515 | 0.0 | 608 |
| MS.gene51549.t1 | AT5G56680 | 27.799 | 259 | 132 | 7 | 278 | 487 | 303 | 555 | 1.22e-21 | 98.6 |
| MS.gene51549.t1 | AT4G17300 | 24.396 | 414 | 208 | 12 | 150 | 487 | 186 | 570 | 3.29e-21 | 97.4 |
| MS.gene51549.t1 | AT4G17300 | 24.396 | 414 | 208 | 12 | 150 | 487 | 166 | 550 | 4.12e-21 | 97.1 |
| MS.gene51549.t1 | AT1G70980 | 26.538 | 260 | 136 | 7 | 278 | 487 | 300 | 554 | 6.78e-18 | 87.0 |
Find 127 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTACATCGATTCTTTC+AGG | 0.151574 | 1.3:-8252393 | MS.gene51549:intron |
| ATTCCAGCCGCTCCTATTAA+AGG | 0.200895 | 1.3:-8255382 | MS.gene51549:CDS |
| CTTTGCGGCATCCTTCTTGC+AGG | 0.276045 | 1.3:+8255786 | None:intergenic |
| ATGTCAATATGTGGTGATTT+TGG | 0.279212 | 1.3:-8254477 | MS.gene51549:CDS |
| TTCTTAGTCATCAGAGAAAA+TGG | 0.279492 | 1.3:-8255520 | MS.gene51549:CDS |
| TCAAAAGAGTTACTGTAGTT+TGG | 0.284688 | 1.3:+8252703 | None:intergenic |
| GATCCCCTTGCTGTCAATTA+TGG | 0.290000 | 1.3:-8255694 | MS.gene51549:CDS |
| TATGTAAGCCGCAGAGTATT+TGG | 0.299031 | 1.3:+8253962 | None:intergenic |
| TGAAATTGAGAAGGCCATTC+AGG | 0.299926 | 1.3:-8255127 | MS.gene51549:intron |
| TGTTGTGAGGCACCTTTAAT+AGG | 0.308209 | 1.3:+8255370 | None:intergenic |
| TGGAAAATTCCTTGATTTGC+TGG | 0.311128 | 1.3:+8254818 | None:intergenic |
| AGGCATCTGTGCGAGTTTAC+AGG | 0.319353 | 1.3:-8254402 | MS.gene51549:CDS |
| CAAAAGAGTTACTGTAGTTT+GGG | 0.335107 | 1.3:+8252704 | None:intergenic |
| CACCGTACAGTGCTTGGTTC+AGG | 0.346864 | 1.3:-8255494 | MS.gene51549:CDS |
| CACAATACAGTTTCCTCACT+TGG | 0.354867 | 1.3:+8255208 | None:intergenic |
| CAGAAGATTCCTTTACTCAT+AGG | 0.359787 | 1.3:-8254422 | MS.gene51549:CDS |
| CACACTCCTAAGTTGATTGC+TGG | 0.375345 | 1.3:-8254588 | MS.gene51549:CDS |
| GTCCAGTCGTTGACATTGAC+AGG | 0.393463 | 1.3:+8255637 | None:intergenic |
| TAGCAAGGCATTGTATAAAA+TGG | 0.394303 | 1.3:+8252733 | None:intergenic |
| AGGTGGCGGCGGCAACTTCT+CGG | 0.397158 | 1.3:+8255746 | None:intergenic |
| GTACCACCACACGGTGGCTT+TGG | 0.402704 | 1.3:-8252221 | MS.gene51549:CDS |
| ACAACTTGTTCGTGTGAATC+AGG | 0.411639 | 1.3:-8254879 | MS.gene51549:CDS |
| CAAGAAGGATGCCGCAAAGC+TGG | 0.416596 | 1.3:-8255782 | MS.gene51549:CDS |
| CAAAGGGCAACCTGCATGCC+TGG | 0.419819 | 1.3:-8254526 | MS.gene51549:CDS |
| TACAGGTCTTGATGTTGAAA+TGG | 0.423398 | 1.3:-8254385 | MS.gene51549:CDS |
| AGGGTGGAGCTGCTGTCTTT+AGG | 0.428133 | 1.3:-8254557 | MS.gene51549:CDS |
| GGAGTAGAGATTGAACCTTT+TGG | 0.442706 | 1.3:-8252953 | MS.gene51549:CDS |
| CATTGACAGGGGTCTTCGAT+TGG | 0.443151 | 1.3:+8255650 | None:intergenic |
| ATCTGCGGACTCACTAAATC+AGG | 0.450583 | 1.3:+8255466 | None:intergenic |
| CTTGATTTGCTGGTGTTCGC+AGG | 0.452358 | 1.3:+8254828 | None:intergenic |
| AACGCCATCTTCTTCCCAAC+TGG | 0.452718 | 1.3:+8255541 | None:intergenic |
| GCCCTCCCACGGATTAGAAC+CGG | 0.456675 | 1.3:+8255577 | None:intergenic |
| GCAGCATCCTCGATATTAAT+CGG | 0.461821 | 1.3:+8255162 | None:intergenic |
| TGGAGCTGCTGTCTTTAGGC+TGG | 0.464922 | 1.3:-8254553 | MS.gene51549:CDS |
| GATTAAGAAACATTATTATG+AGG | 0.466183 | 1.3:-8254361 | MS.gene51549:intron |
| TTACATTTCCAACTTGAGAC+TGG | 0.472065 | 1.3:+8254792 | None:intergenic |
| TATTAAAGGTGCCTCACAAC+AGG | 0.473545 | 1.3:-8255368 | MS.gene51549:intron |
| CGGTGGCTTTGGAGTAGGCT+TGG | 0.490259 | 1.3:-8252210 | MS.gene51549:CDS |
| TTAGGCGAGGAGATAATATC+AGG | 0.491304 | 1.3:-8252490 | MS.gene51549:intron |
| TGAGGCTCTCAATGATTCAC+TGG | 0.499024 | 1.3:-8255608 | MS.gene51549:CDS |
| TGGTTTCACCGTACAGTGCT+TGG | 0.499781 | 1.3:-8255500 | MS.gene51549:CDS |
| AAAATGGTCTTACAGCCAAC+GGG | 0.502027 | 1.3:+8252749 | None:intergenic |
| GTCTTACAGCCAACGGGTAC+CGG | 0.506627 | 1.3:+8252755 | None:intergenic |
| TCAGTATTCAAGTCACCAAA+AGG | 0.506705 | 1.3:+8252938 | None:intergenic |
| CTAGATCCAGCAATCAACTT+AGG | 0.510006 | 1.3:+8254582 | None:intergenic |
| TTTAATAGGAGCGGCTGGAA+TGG | 0.513685 | 1.3:+8255384 | None:intergenic |
| GAGTCTATTGTCGATGTCGA+AGG | 0.513770 | 1.3:-8255415 | MS.gene51549:CDS |
| GCACCTTTAATAGGAGCGGC+TGG | 0.516328 | 1.3:+8255379 | None:intergenic |
| CACAAGCTATTCGACCAGTT+GGG | 0.517268 | 1.3:-8255555 | MS.gene51549:CDS |
| GCACAAGCTATTCGACCAGT+TGG | 0.517849 | 1.3:-8255556 | MS.gene51549:CDS |
| CAGCCAACGGGTACCGGTGA+AGG | 0.524085 | 1.3:+8252761 | None:intergenic |
| CTGCGGCTTACATATGAAGA+AGG | 0.526092 | 1.3:-8253953 | MS.gene51549:CDS |
| TTCCAACTTGAGACTGGATG+TGG | 0.528293 | 1.3:+8254798 | None:intergenic |
| AATGAATATATATACCTGAA+TGG | 0.529761 | 1.3:+8255113 | None:intergenic |
| GAAACTGTATTGTGTGAGTA+AGG | 0.532678 | 1.3:-8255199 | MS.gene51549:CDS |
| GAATAGCTTGTGCCCTCCCA+CGG | 0.535699 | 1.3:+8255566 | None:intergenic |
| CTGCGAACACCAGCAAATCA+AGG | 0.537117 | 1.3:-8254827 | MS.gene51549:CDS |
| TTCCACATCCAGTCTCAAGT+TGG | 0.538148 | 1.3:-8254800 | MS.gene51549:CDS |
| GAAGTTGAGGTGACTGAGCC+AGG | 0.538658 | 1.3:+8254508 | None:intergenic |
| AGAAAGGAAACTAGGCCAGC+TGG | 0.539715 | 1.3:-8252912 | MS.gene51549:CDS |
| TCTTTAGGCTGGACTACAAA+GGG | 0.542694 | 1.3:-8254542 | MS.gene51549:CDS |
| CGATGTAGCAGAGGTGGCGG+CGG | 0.543849 | 1.3:+8255735 | None:intergenic |
| CCACACGGTGGCTTTGGAGT+AGG | 0.547341 | 1.3:-8252215 | MS.gene51549:CDS |
| AACAAGCCGGTTCTAATCCG+TGG | 0.547533 | 1.3:-8255583 | MS.gene51549:CDS |
| CCCCTGTCAATGTCAACGAC+TGG | 0.551263 | 1.3:-8255639 | MS.gene51549:CDS |
| TAAAATGGTCTTACAGCCAA+CGG | 0.552316 | 1.3:+8252748 | None:intergenic |
| TCGATATTAATCGGCAGAGT+AGG | 0.553228 | 1.3:+8255171 | None:intergenic |
| GGTGACTGAGCCAGGCATGC+AGG | 0.555621 | 1.3:+8254516 | None:intergenic |
| TCGATTGGAGCTCAATGAGC+GGG | 0.557785 | 1.3:+8255665 | None:intergenic |
| GACATTTGCTTGTGAAGTTG+AGG | 0.558674 | 1.3:+8254495 | None:intergenic |
| GCACAGATGCCTATGAGTAA+AGG | 0.560403 | 1.3:+8254413 | None:intergenic |
| CACAAGCAAATGTCAATATG+TGG | 0.561198 | 1.3:-8254486 | MS.gene51549:CDS |
| AGTCGATGTAGCAGAGGTGG+CGG | 0.572655 | 1.3:+8255732 | None:intergenic |
| CAGAGTTCTATATCCTTCAC+CGG | 0.573477 | 1.3:-8252774 | MS.gene51549:CDS |
| ATTAATCGGCAGAGTAGGAA+TGG | 0.575600 | 1.3:+8255176 | None:intergenic |
| TAGTTTGGGTTGTCATAGCA+AGG | 0.575643 | 1.3:+8252718 | None:intergenic |
| GAAGAACGTGCACAAGCTTG+CGG | 0.577219 | 1.3:-8252436 | MS.gene51549:CDS |
| GTCTTTAGGCTGGACTACAA+AGG | 0.579932 | 1.3:-8254543 | MS.gene51549:CDS |
| TCGACCAGTTGGGAAGAAGA+TGG | 0.581394 | 1.3:-8255545 | MS.gene51549:CDS |
| AGACTCACGGCTGAGAGCGG+CGG | 0.581736 | 1.3:+8255432 | None:intergenic |
| TGCACAAGCTTGCGGCATTG+AGG | 0.583418 | 1.3:-8252428 | MS.gene51549:CDS |
| AATCATTGAGAGCCTCAACT+CGG | 0.583678 | 1.3:+8255614 | None:intergenic |
| ACTGAAGCAGAAAGGAAACT+AGG | 0.584857 | 1.3:-8252920 | MS.gene51549:CDS |
| GAGAGTCGATGTAGCAGAGG+TGG | 0.585897 | 1.3:+8255729 | None:intergenic |
| TACTCTGCCGATTAATATCG+AGG | 0.589627 | 1.3:-8255169 | MS.gene51549:CDS |
| TCCAGTCGTTGACATTGACA+GGG | 0.592334 | 1.3:+8255638 | None:intergenic |
| AGAGAGAGTCGATGTAGCAG+AGG | 0.593608 | 1.3:+8255726 | None:intergenic |
| ACTTGAATACTGAAGCAGAA+AGG | 0.595013 | 1.3:-8252928 | MS.gene51549:CDS |
| TGATTTAGTGAGTCCGCAGA+TGG | 0.596877 | 1.3:-8255464 | MS.gene51549:CDS |
| ATCATTGAGAGCCTCAACTC+GGG | 0.599803 | 1.3:+8255615 | None:intergenic |
| CAACGACTGGACCCGAGTTG+AGG | 0.600329 | 1.3:-8255626 | MS.gene51549:CDS |
| TCAAGAGCCGACACTGTCAT+CGG | 0.603493 | 1.3:-8255836 | MS.gene51549:CDS |
| GATCCTTCCGATGACAGTGT+CGG | 0.605021 | 1.3:+8255829 | None:intergenic |
| TGAGGCACCTTTAATAGGAG+CGG | 0.608618 | 1.3:+8255375 | None:intergenic |
| TATCCTTCACCGGTACCCGT+TGG | 0.609544 | 1.3:-8252764 | MS.gene51549:CDS |
| GCCGGTTCTAATCCGTGGGA+GGG | 0.610769 | 1.3:-8255578 | MS.gene51549:CDS |
| TTCGATTGGAGCTCAATGAG+CGG | 0.611035 | 1.3:+8255664 | None:intergenic |
| CAGCAATCAACTTAGGAGTG+TGG | 0.611888 | 1.3:+8254589 | None:intergenic |
| TGATTCACTGGAGAACAAGC+CGG | 0.613416 | 1.3:-8255596 | MS.gene51549:CDS |
| GCGGCAAATTTCACCATCTG+CGG | 0.614321 | 1.3:+8255451 | None:intergenic |
| ATTGCTGGATCTAGTGAGGG+TGG | 0.614640 | 1.3:-8254573 | MS.gene51549:CDS |
| ATACCATAATTGACAGCAAG+GGG | 0.614733 | 1.3:+8255691 | None:intergenic |
| ACAAGCCGGTTCTAATCCGT+GGG | 0.615482 | 1.3:-8255582 | MS.gene51549:CDS |
| TATTGTCGATGTCGAAGGTG+TGG | 0.616371 | 1.3:-8255410 | MS.gene51549:CDS |
| AATAGACTCACGGCTGAGAG+CGG | 0.623488 | 1.3:+8255429 | None:intergenic |
| AGCCGGTTCTAATCCGTGGG+AGG | 0.623958 | 1.3:-8255579 | MS.gene51549:CDS |
| AAGTGAAGTTGAAATTGAGA+AGG | 0.624126 | 1.3:-8255136 | MS.gene51549:CDS |
| GAGCCGACACTGTCATCGGA+AGG | 0.625324 | 1.3:-8255832 | MS.gene51549:CDS |
| GTTGATTGCTGGATCTAGTG+AGG | 0.632210 | 1.3:-8254577 | MS.gene51549:CDS |
| CAATACCATAATTGACAGCA+AGG | 0.634292 | 1.3:+8255689 | None:intergenic |
| CGTGTAGTAATGCTCTTCTG+TGG | 0.635161 | 1.3:-8252185 | MS.gene51549:CDS |
| TGCCTGAACCAAGCACTGTA+CGG | 0.635520 | 1.3:+8255492 | None:intergenic |
| ATCATAACCAACCTGTTGTG+AGG | 0.639858 | 1.3:+8255357 | None:intergenic |
| AGAAGGTATTCAGATGCTCA+AGG | 0.641602 | 1.3:-8253936 | MS.gene51549:intron |
| TTGATTGCTGGATCTAGTGA+GGG | 0.644845 | 1.3:-8254576 | MS.gene51549:CDS |
| ACTCCAAAGCCACCGTGTGG+TGG | 0.646949 | 1.3:+8252218 | None:intergenic |
| CGACATCGACAATAGACTCA+CGG | 0.651944 | 1.3:+8255419 | None:intergenic |
| GAATCTTCTGCTCTAAACAC+AGG | 0.652142 | 1.3:+8254435 | None:intergenic |
| AGATATGGTGTACCACCACA+CGG | 0.671410 | 1.3:-8252230 | MS.gene51549:CDS |
| TATAGGTTGAAATCCAAGTG+AGG | 0.674003 | 1.3:-8255221 | MS.gene51549:intron |
| GCAATCCTGAGTGGGTCACG+TGG | 0.689157 | 1.3:+8252130 | None:intergenic |
| AATACCATAATTGACAGCAA+GGG | 0.690003 | 1.3:+8255690 | None:intergenic |
| TGGCGGCGGCAACTTCTCGG+CGG | 0.706873 | 1.3:+8255749 | None:intergenic |
| CCTACTCCAAAGCCACCGTG+TGG | 0.729566 | 1.3:+8252215 | None:intergenic |
| CCAGTCGTTGACATTGACAG+GGG | 0.731951 | 1.3:+8255639 | None:intergenic |
| AGTATCTTCCAAATACTCTG+CGG | 0.740430 | 1.3:-8253970 | MS.gene51549:CDS |
| TATGGTGTACCACCACACGG+TGG | 0.820152 | 1.3:-8252227 | MS.gene51549:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATAATATTAGAGAAAAT+AGG | + | chr1.3:8253234-8253253 | None:intergenic | 15.0% |
| !! | ATTATATAAATGTCATTGAA+AGG | - | chr1.3:8254345-8254364 | MS.gene51549:intron | 15.0% |
| !! | TAACTATGATATATATAAGA+TGG | - | chr1.3:8254950-8254969 | MS.gene51549:intron | 15.0% |
| !! | TTTCAATTTAATTCAAGAAA+AGG | - | chr1.3:8254570-8254589 | MS.gene51549:CDS | 15.0% |
| !! | TTTCTTGAATTAAATTGAAA+AGG | + | chr1.3:8254570-8254589 | None:intergenic | 15.0% |
| !!! | GATTTTGATTTTGATTATAA+TGG | - | chr1.3:8252734-8252753 | MS.gene51549:CDS | 15.0% |
| !!! | TCTGGTTATAATAATTTTAT+GGG | - | chr1.3:8255703-8255722 | MS.gene51549:CDS | 15.0% |
| !! | AAATTGATGAAAATGTACTT+GGG | - | chr1.3:8254387-8254406 | MS.gene51549:CDS | 20.0% |
| !! | AATGAATATATATACCTGAA+TGG | + | chr1.3:8252888-8252907 | None:intergenic | 20.0% |
| !! | ACCAAATAATTGTTTACTAT+TGG | - | chr1.3:8254540-8254559 | MS.gene51549:CDS | 20.0% |
| !! | ATAGTAAACAATTATTTGGT+TGG | + | chr1.3:8254540-8254559 | None:intergenic | 20.0% |
| !! | ATCAAGAAATTGTTACTATT+GGG | - | chr1.3:8254728-8254747 | MS.gene51549:intron | 20.0% |
| !! | CAAATAATTGTTTACTATTG+GGG | - | chr1.3:8254542-8254561 | MS.gene51549:CDS | 20.0% |
| !! | CCAAATAATTGTTTACTATT+GGG | - | chr1.3:8254541-8254560 | MS.gene51549:CDS | 20.0% |
| !! | GATTAAGAAACATTATTATG+AGG | - | chr1.3:8253637-8253656 | MS.gene51549:intron | 20.0% |
| !! | TAAATTGATGAAAATGTACT+TGG | - | chr1.3:8254386-8254405 | MS.gene51549:CDS | 20.0% |
| !! | TCAATTACAACATTTCTAAT+CGG | + | chr1.3:8252912-8252931 | None:intergenic | 20.0% |
| !! | TCAATTTATTTGTTTGTAGT+GGG | - | chr1.3:8253913-8253932 | MS.gene51549:intron | 20.0% |
| !! | TGTAATTCTATTTATAGGTA+TGG | - | chr1.3:8255199-8255218 | MS.gene51549:CDS | 20.0% |
| !! | TTCAATTTATTTGTTTGTAG+TGG | - | chr1.3:8253912-8253931 | MS.gene51549:intron | 20.0% |
| !!! | CATTTCTTAAGTTAGTTTAT+CGG | + | chr1.3:8253318-8253337 | None:intergenic | 20.0% |
| !!! | CTCTGGTTATAATAATTTTA+TGG | - | chr1.3:8255702-8255721 | MS.gene51549:CDS | 20.0% |
| !!! | CTGGTTATAATAATTTTATG+GGG | - | chr1.3:8255704-8255723 | MS.gene51549:CDS | 20.0% |
| !!! | TCAATTTTACAAAATAGACA+GGG | + | chr1.3:8254189-8254208 | None:intergenic | 20.0% |
| !!! | TGTCTATTTTGTAAAATTGA+GGG | - | chr1.3:8254189-8254208 | MS.gene51549:intron | 20.0% |
| !!! | TGTTGTTTTGTTTAATATAC+TGG | - | chr1.3:8253038-8253057 | MS.gene51549:intron | 20.0% |
| ! | AAACAAATTAACACCTTTAG+GGG | + | chr1.3:8253855-8253874 | None:intergenic | 25.0% |
| ! | ACATTATTATGAGGTACATT+TGG | - | chr1.3:8253646-8253665 | MS.gene51549:intron | 25.0% |
| ! | AGGACATATAGTTATTTGAT+TGG | - | chr1.3:8254590-8254609 | MS.gene51549:CDS | 25.0% |
| ! | ATCAGAAACAAAAAGCAAAA+AGG | - | chr1.3:8252189-8252208 | MS.gene51549:CDS | 25.0% |
| ! | CAAACAAATTAACACCTTTA+GGG | + | chr1.3:8253856-8253875 | None:intergenic | 25.0% |
| ! | CATCAAGAAATTGTTACTAT+TGG | - | chr1.3:8254727-8254746 | MS.gene51549:intron | 25.0% |
| ! | CCCAATAGTAAACAATTATT+TGG | + | chr1.3:8254544-8254563 | None:intergenic | 25.0% |
| ! | GATAAACAAACAAATGTGAT+AGG | - | chr1.3:8254126-8254145 | MS.gene51549:intron | 25.0% |
| ! | GTTCAATGTCTTTGTTAATA+CGG | - | chr1.3:8255653-8255672 | MS.gene51549:CDS | 25.0% |
| ! | TATAAGATTAAACTGTACAC+AGG | + | chr1.3:8254244-8254263 | None:intergenic | 25.0% |
| ! | TCAAGAAATTGTTACTATTG+GGG | - | chr1.3:8254729-8254748 | MS.gene51549:intron | 25.0% |
| ! | TCACCAATCAAATAACTATA+TGG | + | chr1.3:8254596-8254615 | None:intergenic | 25.0% |
| ! | TCGACTGTAATTCTATTTAT+AGG | - | chr1.3:8255194-8255213 | MS.gene51549:CDS | 25.0% |
| ! | TGATTGATCATTTACAGATA+TGG | - | chr1.3:8255753-8255772 | MS.gene51549:CDS | 25.0% |
| ! | TTAGTCATTTCATTTGATGA+TGG | - | chr1.3:8254467-8254486 | MS.gene51549:CDS | 25.0% |
| ! | TTCAATGTCTTTGTTAATAC+GGG | - | chr1.3:8255654-8255673 | MS.gene51549:CDS | 25.0% |
| ! | TTTAAACTTCACTACAAGAT+TGG | + | chr1.3:8254294-8254313 | None:intergenic | 25.0% |
| ! | TTTGAACACAAAATGTAAGA+AGG | - | chr1.3:8253794-8253813 | MS.gene51549:intron | 25.0% |
| !! | AACTTAAGAAATGCATTTTG+CGG | - | chr1.3:8253325-8253344 | MS.gene51549:intron | 25.0% |
| !! | AATGCTTTGTTATGACAATT+TGG | - | chr1.3:8255364-8255383 | MS.gene51549:intron | 25.0% |
| !! | AGTTATAAAAGATTTGAGAC+AGG | + | chr1.3:8255129-8255148 | None:intergenic | 25.0% |
| !! | ATGATCAATCATTTAGTTTC+TGG | + | chr1.3:8255744-8255763 | None:intergenic | 25.0% |
| !! | CTAAATGAGATCTCATTTTA+TGG | + | chr1.3:8254451-8254470 | None:intergenic | 25.0% |
| !! | CTCAATTTTACAAAATAGAC+AGG | + | chr1.3:8254190-8254209 | None:intergenic | 25.0% |
| !! | CTGTCTATTTTGTAAAATTG+AGG | - | chr1.3:8254188-8254207 | MS.gene51549:intron | 25.0% |
| !! | GTCTATTTTGTAAAATTGAG+GGG | - | chr1.3:8254190-8254209 | MS.gene51549:intron | 25.0% |
| !! | GTTATAAAAGATTTGAGACA+GGG | + | chr1.3:8255128-8255147 | None:intergenic | 25.0% |
| !! | GTTATGATATCTTGTTACTT+AGG | - | chr1.3:8252656-8252675 | MS.gene51549:intron | 25.0% |
| !! | TGGAATTTTCAAAAATTGGA+GGG | + | chr1.3:8254520-8254539 | None:intergenic | 25.0% |
| !! | TGGTTGGAATTTTCAAAAAT+TGG | + | chr1.3:8254524-8254543 | None:intergenic | 25.0% |
| !! | TTGGAATTTTCAAAAATTGG+AGG | + | chr1.3:8254521-8254540 | None:intergenic | 25.0% |
| !!! | CTAAAGGTGTTAATTTGTTT+GGG | - | chr1.3:8253855-8253874 | MS.gene51549:intron | 25.0% |
| !!! | GTTGATGGTGATTTTTTAAT+TGG | - | chr1.3:8253083-8253102 | MS.gene51549:intron | 25.0% |
| !!! | TACTGATACTTTCTGTTTTT+TGG | - | chr1.3:8253725-8253744 | MS.gene51549:intron | 25.0% |
| !!! | TTGATTATAATGGTGTTATG+TGG | - | chr1.3:8252744-8252763 | MS.gene51549:CDS | 25.0% |
| AAGTGAAGTTGAAATTGAGA+AGG | - | chr1.3:8252862-8252881 | MS.gene51549:intron | 30.0% | |
| AATACCATAATTGACAGCAA+GGG | + | chr1.3:8252311-8252330 | None:intergenic | 30.0% | |
| ACACACATCTTTAATCAGAA+AGG | + | chr1.3:8253014-8253033 | None:intergenic | 30.0% | |
| CAAAAGAGTTACTGTAGTTT+GGG | + | chr1.3:8255297-8255316 | None:intergenic | 30.0% | |
| CAAGAAATTGTTACTATTGG+GGG | - | chr1.3:8254730-8254749 | MS.gene51549:intron | 30.0% | |
| CAAGTTAGTGACACTTATTT+AGG | - | chr1.3:8254617-8254636 | MS.gene51549:CDS | 30.0% | |
| CCAAACAAATTAACACCTTT+AGG | + | chr1.3:8253857-8253876 | None:intergenic | 30.0% | |
| GGACCATATAGTTATTTGAT+TGG | - | chr1.3:8254779-8254798 | MS.gene51549:intron | 30.0% | |
| TCAAAAGAGTTACTGTAGTT+TGG | + | chr1.3:8255298-8255317 | None:intergenic | 30.0% | |
| TTCTTAGTCATCAGAGAAAA+TGG | - | chr1.3:8252478-8252497 | MS.gene51549:CDS | 30.0% | |
| TTTACATCAAGACTCAGAAA+AGG | - | chr1.3:8254914-8254933 | MS.gene51549:intron | 30.0% | |
| TTTGTGAGTTGTGATTGTTT+AGG | - | chr1.3:8252712-8252731 | MS.gene51549:CDS | 30.0% | |
| ! | ATGTCAATATGTGGTGATTT+TGG | - | chr1.3:8253521-8253540 | MS.gene51549:intron | 30.0% |
| ! | TATGGAAGTACAAACACATT+TGG | + | chr1.3:8255433-8255452 | None:intergenic | 30.0% |
| ! | TATTTTGTAAAATTGAGGGG+TGG | - | chr1.3:8254193-8254212 | MS.gene51549:intron | 30.0% |
| ! | TCTTAAGTTAGTTTATCGGT+AGG | + | chr1.3:8253314-8253333 | None:intergenic | 30.0% |
| !! | CCTAAAGGTGTTAATTTGTT+TGG | - | chr1.3:8253854-8253873 | MS.gene51549:intron | 30.0% |
| !! | TAGCAAGGCATTGTATAAAA+TGG | + | chr1.3:8255268-8255287 | None:intergenic | 30.0% |
| !! | TCATTTGATGATGGTAGTTT+GGG | - | chr1.3:8254476-8254495 | MS.gene51549:CDS | 30.0% |
| !! | TTCATTTGATGATGGTAGTT+TGG | - | chr1.3:8254475-8254494 | MS.gene51549:CDS | 30.0% |
| !! | TTTCCTCTTGTAGTTAGTTT+TGG | - | chr1.3:8254674-8254693 | MS.gene51549:intron | 30.0% |
| !!! | ATTACTTTTCTAAAACCAGC+TGG | + | chr1.3:8255104-8255123 | None:intergenic | 30.0% |
| !!! | TATGTGGTTTTGTTCTCTAT+AGG | - | chr1.3:8252760-8252779 | MS.gene51549:CDS | 30.0% |
| !!! | TTCCTCTTGTAGTTAGTTTT+GGG | - | chr1.3:8254675-8254694 | MS.gene51549:intron | 30.0% |
| AACTATTGTTGAGGAATTCC+TGG | - | chr1.3:8254645-8254664 | MS.gene51549:intron | 35.0% | |
| ACAAAGACATTGAACACGAT+AGG | + | chr1.3:8255648-8255667 | None:intergenic | 35.0% | |
| ACTATTGTTGAGGAATTCCT+GGG | - | chr1.3:8254646-8254665 | MS.gene51549:intron | 35.0% | |
| ACTTGAATACTGAAGCAGAA+AGG | - | chr1.3:8255070-8255089 | MS.gene51549:intron | 35.0% | |
| AGTATCTTCCAAATACTCTG+CGG | - | chr1.3:8254028-8254047 | MS.gene51549:intron | 35.0% | |
| ATACCATAATTGACAGCAAG+GGG | + | chr1.3:8252310-8252329 | None:intergenic | 35.0% | |
| CAAATGTGATAGGATGATGA+TGG | - | chr1.3:8254136-8254155 | MS.gene51549:intron | 35.0% | |
| CAATACCATAATTGACAGCA+AGG | + | chr1.3:8252312-8252331 | None:intergenic | 35.0% | |
| CACAAGCAAATGTCAATATG+TGG | - | chr1.3:8253512-8253531 | MS.gene51549:intron | 35.0% | |
| CACCATCAACATTCATGTAA+GGG | + | chr1.3:8253073-8253092 | None:intergenic | 35.0% | |
| CAGAAGATTCCTTTACTCAT+AGG | - | chr1.3:8253576-8253595 | MS.gene51549:intron | 35.0% | |
| CTTTGTTAATACGGGTGTTT+AGG | - | chr1.3:8255662-8255681 | MS.gene51549:CDS | 35.0% | |
| GAAACTGTATTGTGTGAGTA+AGG | - | chr1.3:8252799-8252818 | MS.gene51549:intron | 35.0% | |
| GAAGATACTGCACATTCATA+GGG | + | chr1.3:8254017-8254036 | None:intergenic | 35.0% | |
| GGAATTCCTCAACAATAGTT+AGG | + | chr1.3:8254645-8254664 | None:intergenic | 35.0% | |
| TACAGGTCTTGATGTTGAAA+TGG | - | chr1.3:8253613-8253632 | MS.gene51549:intron | 35.0% | |
| TAGGTTCCTAACTATTGTTG+AGG | - | chr1.3:8254636-8254655 | MS.gene51549:intron | 35.0% | |
| TCACCATCAACATTCATGTA+AGG | + | chr1.3:8253074-8253093 | None:intergenic | 35.0% | |
| TCAGTATTCAAGTCACCAAA+AGG | + | chr1.3:8255063-8255082 | None:intergenic | 35.0% | |
| TTACATTTCCAACTTGAGAC+TGG | + | chr1.3:8253209-8253228 | None:intergenic | 35.0% | |
| ! | CCATAAAAGCTGAAGCTTTT+GGG | - | chr1.3:8255448-8255467 | MS.gene51549:CDS | 35.0% |
| ! | CTATTCAATCCTTGTTGCTT+AGG | - | chr1.3:8255490-8255509 | MS.gene51549:CDS | 35.0% |
| ! | GAGTAATGATTTTGCTTTGC+AGG | - | chr1.3:8255017-8255036 | MS.gene51549:intron | 35.0% |
| ! | GCACGCAATTAATCATGTTT+TGG | - | chr1.3:8255388-8255407 | MS.gene51549:CDS | 35.0% |
| ! | TAAAATGGTCTTACAGCCAA+CGG | + | chr1.3:8255253-8255272 | None:intergenic | 35.0% |
| ! | TATAGGTTGAAATCCAAGTG+AGG | - | chr1.3:8252777-8252796 | MS.gene51549:CDS | 35.0% |
| ! | TATCCACATGCCTGAATTTT+TGG | - | chr1.3:8255540-8255559 | MS.gene51549:CDS | 35.0% |
| ! | TCCATAAAAGCTGAAGCTTT+TGG | - | chr1.3:8255447-8255466 | MS.gene51549:CDS | 35.0% |
| ! | TCTTTTGATGTCTTCATTCG+AGG | - | chr1.3:8255310-8255329 | MS.gene51549:intron | 35.0% |
| ! | TGGAAGTTTAAGCACTGTTA+GGG | - | chr1.3:8254213-8254232 | MS.gene51549:intron | 35.0% |
| ! | TTTGCGTTTGAAATTGTCGA+GGG | - | chr1.3:8253689-8253708 | MS.gene51549:intron | 35.0% |
| !! | CATTTGATGATGGTAGTTTG+GGG | - | chr1.3:8254477-8254496 | MS.gene51549:CDS | 35.0% |
| !! | TGGAAAATTCCTTGATTTGC+TGG | + | chr1.3:8253183-8253202 | None:intergenic | 35.0% |
| !!! | ATTTTTTAATTGGTGCAGGC+TGG | - | chr1.3:8253093-8253112 | MS.gene51549:intron | 35.0% |
| !!! | GATACTTTCTGTTTTTTGGC+AGG | - | chr1.3:8253729-8253748 | MS.gene51549:intron | 35.0% |
| !!! | GGTGATTTTTTAATTGGTGC+AGG | - | chr1.3:8253089-8253108 | MS.gene51549:intron | 35.0% |
| !!! | TCCTCTTGTAGTTAGTTTTG+GGG | - | chr1.3:8254676-8254695 | MS.gene51549:intron | 35.0% |
| !!! | TGTAGTTAGTTTTGGGAGTT+TGG | - | chr1.3:8254682-8254701 | MS.gene51549:intron | 35.0% |
| !!! | TTCTGTTTTTTGGCAGGTTA+TGG | - | chr1.3:8253735-8253754 | MS.gene51549:intron | 35.0% |
| AATCATTGAGAGCCTCAACT+CGG | + | chr1.3:8252387-8252406 | None:intergenic | 40.0% | |
| ACAAGAGGAAAAAATACCCC+AGG | + | chr1.3:8254855-8254874 | None:intergenic | 40.0% | |
| ACTGAAGCAGAAAGGAAACT+AGG | - | chr1.3:8255078-8255097 | MS.gene51549:intron | 40.0% | |
| ATAACCAGAGCTCAGTAAGA+GGG | + | chr1.3:8255692-8255711 | None:intergenic | 40.0% | |
| ATCATAACCAACCTGTTGTG+AGG | + | chr1.3:8252644-8252663 | None:intergenic | 40.0% | |
| ATTAATCGGCAGAGTAGGAA+TGG | + | chr1.3:8252825-8252844 | None:intergenic | 40.0% | |
| CACAATACAGTTTCCTCACT+TGG | + | chr1.3:8252793-8252812 | None:intergenic | 40.0% | |
| CAGAGTTCTATATCCTTCAC+CGG | - | chr1.3:8255224-8255243 | MS.gene51549:intron | 40.0% | |
| CAGGACCAATCTCAAAAACA+CGG | + | chr1.3:8253547-8253566 | None:intergenic | 40.0% | |
| CTACAATCAAGATGAGAGTG+TGG | - | chr1.3:8252946-8252965 | MS.gene51549:CDS | 40.0% | |
| CTAGATCCAGCAATCAACTT+AGG | + | chr1.3:8253419-8253438 | None:intergenic | 40.0% | |
| CTATTGTTGAGGAATTCCTG+GGG | - | chr1.3:8254647-8254666 | MS.gene51549:intron | 40.0% | |
| CTCCCAAAACTAACTACAAG+AGG | + | chr1.3:8254680-8254699 | None:intergenic | 40.0% | |
| CTCCCTTACATGAATGTTGA+TGG | - | chr1.3:8253068-8253087 | MS.gene51549:intron | 40.0% | |
| CTTCCAAAAATTCAGGCATG+TGG | + | chr1.3:8255546-8255565 | None:intergenic | 40.0% | |
| GAAAATGTACTTGGGTAGAC+AGG | - | chr1.3:8254395-8254414 | MS.gene51549:CDS | 40.0% | |
| GACAGGGATAAAAGACGTAA+AGG | + | chr1.3:8254173-8254192 | None:intergenic | 40.0% | |
| GACATTTGCTTGTGAAGTTG+AGG | + | chr1.3:8253506-8253525 | None:intergenic | 40.0% | |
| GCACGTTCTTCCAAAAATTC+AGG | + | chr1.3:8255553-8255572 | None:intergenic | 40.0% | |
| GCAGCATCCTCGATATTAAT+CGG | + | chr1.3:8252839-8252858 | None:intergenic | 40.0% | |
| GGAAGATACTGCACATTCAT+AGG | + | chr1.3:8254018-8254037 | None:intergenic | 40.0% | |
| TACAAGAGGAAAAATACCCC+AGG | + | chr1.3:8254666-8254685 | None:intergenic | 40.0% | |
| TATAACCAGAGCTCAGTAAG+AGG | + | chr1.3:8255693-8255712 | None:intergenic | 40.0% | |
| TCCCCAAAACTAACTACAAG+AGG | + | chr1.3:8254870-8254889 | None:intergenic | 40.0% | |
| TCGATATTAATCGGCAGAGT+AGG | + | chr1.3:8252830-8252849 | None:intergenic | 40.0% | |
| TCTTTAGGCTGGACTACAAA+GGG | - | chr1.3:8253456-8253475 | MS.gene51549:intron | 40.0% | |
| TGAAATTGAGAAGGCCATTC+AGG | - | chr1.3:8252871-8252890 | MS.gene51549:intron | 40.0% | |
| TTAGGCGAGGAGATAATATC+AGG | - | chr1.3:8255508-8255527 | MS.gene51549:CDS | 40.0% | |
| TTGATTGCTGGATCTAGTGA+GGG | - | chr1.3:8253422-8253441 | MS.gene51549:intron | 40.0% | |
| ! | AAAATGGTCTTACAGCCAAC+GGG | + | chr1.3:8255252-8255271 | None:intergenic | 40.0% |
| ! | AACACCTTTAGGGGTTCAAA+CGG | + | chr1.3:8253846-8253865 | None:intergenic | 40.0% |
| ! | ACAACTTGTTCGTGTGAATC+AGG | - | chr1.3:8253119-8253138 | MS.gene51549:intron | 40.0% |
| ! | ACACATTTGGAGAAGCATGA+TGG | + | chr1.3:8255420-8255439 | None:intergenic | 40.0% |
| ! | ATGCATTTTGCGGTGTGATA+CGG | - | chr1.3:8253335-8253354 | MS.gene51549:intron | 40.0% |
| ! | CCCAAAAGCTTCAGCTTTTA+TGG | + | chr1.3:8255451-8255470 | None:intergenic | 40.0% |
| ! | GAATCTTCTGCTCTAAACAC+AGG | + | chr1.3:8253566-8253585 | None:intergenic | 40.0% |
| ! | GATTTTGCTTTGCAGGAAGT+TGG | - | chr1.3:8255024-8255043 | MS.gene51549:intron | 40.0% |
| ! | GGAGTAGAGATTGAACCTTT+TGG | - | chr1.3:8255045-8255064 | MS.gene51549:intron | 40.0% |
| ! | GTGGAAGTTTAAGCACTGTT+AGG | - | chr1.3:8254212-8254231 | MS.gene51549:intron | 40.0% |
| ! | GTTGCTGCTTGTAAGTTTGT+TGG | - | chr1.3:8253280-8253299 | MS.gene51549:intron | 40.0% |
| ! | GTTTGCGTTTGAAATTGTCG+AGG | - | chr1.3:8253688-8253707 | MS.gene51549:intron | 40.0% |
| ! | TACTCTGCCGATTAATATCG+AGG | - | chr1.3:8252829-8252848 | MS.gene51549:intron | 40.0% |
| ! | TATGTAAGCCGCAGAGTATT+TGG | + | chr1.3:8254039-8254058 | None:intergenic | 40.0% |
| ! | TGTTGTGAGGCACCTTTAAT+AGG | + | chr1.3:8252631-8252650 | None:intergenic | 40.0% |
| !! | AGAAGGTATTCAGATGCTCA+AGG | - | chr1.3:8254062-8254081 | MS.gene51549:intron | 40.0% |
| !! | ATGTGATAGGATGATGATGG+CGG | - | chr1.3:8254139-8254158 | MS.gene51549:intron | 40.0% |
| !! | CTGCTTACATCGATTCTTTC+AGG | - | chr1.3:8255605-8255624 | MS.gene51549:CDS | 40.0% |
| !! | TAGTTTGGGTTGTCATAGCA+AGG | + | chr1.3:8255283-8255302 | None:intergenic | 40.0% |
| !! | TATTAAAGGTGCCTCACAAC+AGG | - | chr1.3:8252630-8252649 | MS.gene51549:intron | 40.0% |
| !!! | GTAGTTAGTTTTGGGGAGTT+TGG | - | chr1.3:8254873-8254892 | MS.gene51549:CDS | 40.0% |
| !!! | TTTGGCCGTGTTTTTGAGAT+TGG | - | chr1.3:8253539-8253558 | MS.gene51549:intron | 40.0% |
| AAGCAAAAAGGCCTGCAAGA+AGG | - | chr1.3:8252201-8252220 | MS.gene51549:CDS | 45.0% | |
| AGATATGGTGTACCACCACA+CGG | - | chr1.3:8255768-8255787 | MS.gene51549:CDS | 45.0% | |
| ATCATTGAGAGCCTCAACTC+GGG | + | chr1.3:8252386-8252405 | None:intergenic | 45.0% | |
| ATCTGCGGACTCACTAAATC+AGG | + | chr1.3:8252535-8252554 | None:intergenic | 45.0% | |
| ATTCCAGCCGCTCCTATTAA+AGG | - | chr1.3:8252616-8252635 | MS.gene51549:intron | 45.0% | |
| CACAAGCTATTCGACCAGTT+GGG | - | chr1.3:8252443-8252462 | MS.gene51549:CDS | 45.0% | |
| CAGCAATCAACTTAGGAGTG+TGG | + | chr1.3:8253412-8253431 | None:intergenic | 45.0% | |
| CGACATCGACAATAGACTCA+CGG | + | chr1.3:8252582-8252601 | None:intergenic | 45.0% | |
| CGTGTAGTAATGCTCTTCTG+TGG | - | chr1.3:8255813-8255832 | MS.gene51549:CDS | 45.0% | |
| CTGCGGCTTACATATGAAGA+AGG | - | chr1.3:8254045-8254064 | MS.gene51549:intron | 45.0% | |
| GAGTCTATTGTCGATGTCGA+AGG | - | chr1.3:8252583-8252602 | MS.gene51549:intron | 45.0% | |
| GCACAGATGCCTATGAGTAA+AGG | + | chr1.3:8253588-8253607 | None:intergenic | 45.0% | |
| GTCTTTAGGCTGGACTACAA+AGG | - | chr1.3:8253455-8253474 | MS.gene51549:intron | 45.0% | |
| GTTGATTGCTGGATCTAGTG+AGG | - | chr1.3:8253421-8253440 | MS.gene51549:intron | 45.0% | |
| TAACCAGAGCTCAGTAAGAG+GGG | + | chr1.3:8255691-8255710 | None:intergenic | 45.0% | |
| TAAGAAGGATCTCGAAGCTG+TGG | - | chr1.3:8253809-8253828 | MS.gene51549:intron | 45.0% | |
| TATTGTCGATGTCGAAGGTG+TGG | - | chr1.3:8252588-8252607 | MS.gene51549:intron | 45.0% | |
| TCATTACTCGCTGCAAGACA+AGG | + | chr1.3:8255006-8255025 | None:intergenic | 45.0% | |
| TCCAGTCGTTGACATTGACA+GGG | + | chr1.3:8252363-8252382 | None:intergenic | 45.0% | |
| TGAGGCTCTCAATGATTCAC+TGG | - | chr1.3:8252390-8252409 | MS.gene51549:intron | 45.0% | |
| TGATTCACTGGAGAACAAGC+CGG | - | chr1.3:8252402-8252421 | MS.gene51549:CDS | 45.0% | |
| TGATTTAGTGAGTCCGCAGA+TGG | - | chr1.3:8252534-8252553 | MS.gene51549:intron | 45.0% | |
| TTCCAACTTGAGACTGGATG+TGG | + | chr1.3:8253203-8253222 | None:intergenic | 45.0% | |
| TTCCACATCCAGTCTCAAGT+TGG | - | chr1.3:8253198-8253217 | MS.gene51549:intron | 45.0% | |
| TTCGATTGGAGCTCAATGAG+CGG | + | chr1.3:8252337-8252356 | None:intergenic | 45.0% | |
| TTTAATAGGAGCGGCTGGAA+TGG | + | chr1.3:8252617-8252636 | None:intergenic | 45.0% | |
| ! | ACACCTTTAGGGGTTCAAAC+GGG | + | chr1.3:8253845-8253864 | None:intergenic | 45.0% |
| ! | GATCCCCTTGCTGTCAATTA+TGG | - | chr1.3:8252304-8252323 | MS.gene51549:intron | 45.0% |
| ! | TGAGGCACCTTTAATAGGAG+CGG | + | chr1.3:8252626-8252645 | None:intergenic | 45.0% |
| !! | CACACTCCTAAGTTGATTGC+TGG | - | chr1.3:8253410-8253429 | MS.gene51549:intron | 45.0% |
| AACGCCATCTTCTTCCCAAC+TGG | + | chr1.3:8252460-8252479 | None:intergenic | 50.0% | |
| AATAGACTCACGGCTGAGAG+CGG | + | chr1.3:8252572-8252591 | None:intergenic | 50.0% | |
| AGAAAGGAAACTAGGCCAGC+TGG | - | chr1.3:8255086-8255105 | MS.gene51549:intron | 50.0% | |
| AGAGAGAGTCGATGTAGCAG+AGG | + | chr1.3:8252275-8252294 | None:intergenic | 50.0% | |
| AGGCATCTGTGCGAGTTTAC+AGG | - | chr1.3:8253596-8253615 | MS.gene51549:intron | 50.0% | |
| ATCTCCTCGCCTAAGCAACA+AGG | + | chr1.3:8255502-8255521 | None:intergenic | 50.0% | |
| ATTGCTGGATCTAGTGAGGG+TGG | - | chr1.3:8253425-8253444 | MS.gene51549:intron | 50.0% | |
| CATTGACAGGGGTCTTCGAT+TGG | + | chr1.3:8252351-8252370 | None:intergenic | 50.0% | |
| CCAGTCGTTGACATTGACAG+GGG | + | chr1.3:8252362-8252381 | None:intergenic | 50.0% | |
| CTGCGAACACCAGCAAATCA+AGG | - | chr1.3:8253171-8253190 | MS.gene51549:intron | 50.0% | |
| GAAGAACGTGCACAAGCTTG+CGG | - | chr1.3:8255562-8255581 | MS.gene51549:CDS | 50.0% | |
| GATCCTTCCGATGACAGTGT+CGG | + | chr1.3:8252172-8252191 | None:intergenic | 50.0% | |
| GCACAAGCTATTCGACCAGT+TGG | - | chr1.3:8252442-8252461 | MS.gene51549:CDS | 50.0% | |
| GCGGCAAATTTCACCATCTG+CGG | + | chr1.3:8252550-8252569 | None:intergenic | 50.0% | |
| GTACCCGTTTGAACCCCTAA+AGG | - | chr1.3:8253839-8253858 | MS.gene51549:intron | 50.0% | |
| GTCCAGTCGTTGACATTGAC+AGG | + | chr1.3:8252364-8252383 | None:intergenic | 50.0% | |
| TCAAGAGCCGACACTGTCAT+CGG | - | chr1.3:8252162-8252181 | MS.gene51549:CDS | 50.0% | |
| TCGACCAGTTGGGAAGAAGA+TGG | - | chr1.3:8252453-8252472 | MS.gene51549:CDS | 50.0% | |
| TCGATTGGAGCTCAATGAGC+GGG | + | chr1.3:8252336-8252355 | None:intergenic | 50.0% | |
| TGGTTTCACCGTACAGTGCT+TGG | - | chr1.3:8252498-8252517 | MS.gene51549:intron | 50.0% | |
| TTGCGGTGTGATACGGTGTT+GGG | - | chr1.3:8253342-8253361 | MS.gene51549:intron | 50.0% | |
| TTTGCGGTGTGATACGGTGT+TGG | - | chr1.3:8253341-8253360 | MS.gene51549:intron | 50.0% | |
| ! | AACAAGCCGGTTCTAATCCG+TGG | - | chr1.3:8252415-8252434 | MS.gene51549:CDS | 50.0% |
| ! | ACAAGCCGGTTCTAATCCGT+GGG | - | chr1.3:8252416-8252435 | MS.gene51549:CDS | 50.0% |
| ! | CAATCCTTGTTGCTTAGGCG+AGG | - | chr1.3:8255495-8255514 | MS.gene51549:CDS | 50.0% |
| ! | TGCCTGAACCAAGCACTGTA+CGG | + | chr1.3:8252509-8252528 | None:intergenic | 50.0% |
| !! | AAAGGTGCCTCACAACAGGT+TGG | - | chr1.3:8252634-8252653 | MS.gene51549:intron | 50.0% |
| !! | CTTGATTTGCTGGTGTTCGC+AGG | + | chr1.3:8253173-8253192 | None:intergenic | 50.0% |
| !!! | GCGTTGCTTTTCCAGCTTTG+CGG | + | chr1.3:8252230-8252249 | None:intergenic | 50.0% |
| AGGGTGGAGCTGCTGTCTTT+AGG | - | chr1.3:8253441-8253460 | MS.gene51549:intron | 55.0% | |
| AGTCGATGTAGCAGAGGTGG+CGG | + | chr1.3:8252269-8252288 | None:intergenic | 55.0% | |
| CAAGAAGGATGCCGCAAAGC+TGG | - | chr1.3:8252216-8252235 | MS.gene51549:CDS | 55.0% | |
| CACCGTACAGTGCTTGGTTC+AGG | - | chr1.3:8252504-8252523 | MS.gene51549:intron | 55.0% | |
| CCCCTGTCAATGTCAACGAC+TGG | - | chr1.3:8252359-8252378 | MS.gene51549:intron | 55.0% | |
| CTTTGCGGCATCCTTCTTGC+AGG | + | chr1.3:8252215-8252234 | None:intergenic | 55.0% | |
| GAAGTTGAGGTGACTGAGCC+AGG | + | chr1.3:8253493-8253512 | None:intergenic | 55.0% | |
| GAGAGTCGATGTAGCAGAGG+TGG | + | chr1.3:8252272-8252291 | None:intergenic | 55.0% | |
| GCACCTTTAATAGGAGCGGC+TGG | + | chr1.3:8252622-8252641 | None:intergenic | 55.0% | |
| GTCTTACAGCCAACGGGTAC+CGG | + | chr1.3:8255246-8255265 | None:intergenic | 55.0% | |
| TATCCTTCACCGGTACCCGT+TGG | - | chr1.3:8255234-8255253 | MS.gene51549:intron | 55.0% | |
| TATGGTGTACCACCACACGG+TGG | - | chr1.3:8255771-8255790 | MS.gene51549:CDS | 55.0% | |
| TGCACAAGCTTGCGGCATTG+AGG | - | chr1.3:8255570-8255589 | MS.gene51549:CDS | 55.0% | |
| TGGAGCTGCTGTCTTTAGGC+TGG | - | chr1.3:8253445-8253464 | MS.gene51549:intron | 55.0% | |
| ! | GAATAGCTTGTGCCCTCCCA+CGG | + | chr1.3:8252435-8252454 | None:intergenic | 55.0% |
| ! | GGTGTGATACGGTGTTGGGT+AGG | - | chr1.3:8253346-8253365 | MS.gene51549:intron | 55.0% |
| ACTCCAAAGCCACCGTGTGG+TGG | + | chr1.3:8255783-8255802 | None:intergenic | 60.0% | |
| CAAAGGGCAACCTGCATGCC+TGG | - | chr1.3:8253472-8253491 | MS.gene51549:intron | 60.0% | |
| CAACGACTGGACCCGAGTTG+AGG | - | chr1.3:8252372-8252391 | MS.gene51549:intron | 60.0% | |
| CCTACTCCAAAGCCACCGTG+TGG | + | chr1.3:8255786-8255805 | None:intergenic | 60.0% | |
| CTGCCCCTCTTACTGAGCTC+TGG | - | chr1.3:8255685-8255704 | MS.gene51549:CDS | 60.0% | |
| GAGCCGACACTGTCATCGGA+AGG | - | chr1.3:8252166-8252185 | MS.gene51549:CDS | 60.0% | |
| GTACCACCACACGGTGGCTT+TGG | - | chr1.3:8255777-8255796 | MS.gene51549:CDS | 60.0% | |
| ! | AGCCGGTTCTAATCCGTGGG+AGG | - | chr1.3:8252419-8252438 | MS.gene51549:CDS | 60.0% |
| ! | GCCGGTTCTAATCCGTGGGA+GGG | - | chr1.3:8252420-8252439 | MS.gene51549:CDS | 60.0% |
| !! | CCACACGGTGGCTTTGGAGT+AGG | - | chr1.3:8255783-8255802 | MS.gene51549:CDS | 60.0% |
| !! | CGGTGGCTTTGGAGTAGGCT+TGG | - | chr1.3:8255788-8255807 | MS.gene51549:CDS | 60.0% |
| !! | GCCCTCCCACGGATTAGAAC+CGG | + | chr1.3:8252424-8252443 | None:intergenic | 60.0% |
| AGACTCACGGCTGAGAGCGG+CGG | + | chr1.3:8252569-8252588 | None:intergenic | 65.0% | |
| GGTGACTGAGCCAGGCATGC+AGG | + | chr1.3:8253485-8253504 | None:intergenic | 65.0% | |
| ! | AGGTGGCGGCGGCAACTTCT+CGG | + | chr1.3:8252255-8252274 | None:intergenic | 65.0% |
| ! | CGATGTAGCAGAGGTGGCGG+CGG | + | chr1.3:8252266-8252285 | None:intergenic | 65.0% |
| !! | CAGCCAACGGGTACCGGTGA+AGG | + | chr1.3:8255240-8255259 | None:intergenic | 65.0% |
| TGGCGGCGGCAACTTCTCGG+CGG | + | chr1.3:8252252-8252271 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 8252145 | 8255875 | 8252145 | ID=MS.gene51549 |
| chr1.3 | mRNA | 8252145 | 8255875 | 8252145 | ID=MS.gene51549.t1;Parent=MS.gene51549 |
| chr1.3 | exon | 8255369 | 8255875 | 8255369 | ID=MS.gene51549.t1.exon1;Parent=MS.gene51549.t1 |
| chr1.3 | CDS | 8255369 | 8255875 | 8255369 | ID=cds.MS.gene51549.t1;Parent=MS.gene51549.t1 |
| chr1.3 | exon | 8255128 | 8255238 | 8255128 | ID=MS.gene51549.t1.exon2;Parent=MS.gene51549.t1 |
| chr1.3 | CDS | 8255128 | 8255238 | 8255128 | ID=cds.MS.gene51549.t1;Parent=MS.gene51549.t1 |
| chr1.3 | exon | 8254796 | 8254909 | 8254796 | ID=MS.gene51549.t1.exon3;Parent=MS.gene51549.t1 |
| chr1.3 | CDS | 8254796 | 8254909 | 8254796 | ID=cds.MS.gene51549.t1;Parent=MS.gene51549.t1 |
| chr1.3 | exon | 8254362 | 8254652 | 8254362 | ID=MS.gene51549.t1.exon4;Parent=MS.gene51549.t1 |
| chr1.3 | CDS | 8254362 | 8254652 | 8254362 | ID=cds.MS.gene51549.t1;Parent=MS.gene51549.t1 |
| chr1.3 | exon | 8253937 | 8253990 | 8253937 | ID=MS.gene51549.t1.exon5;Parent=MS.gene51549.t1 |
| chr1.3 | CDS | 8253937 | 8253990 | 8253937 | ID=cds.MS.gene51549.t1;Parent=MS.gene51549.t1 |
| chr1.3 | exon | 8252902 | 8252981 | 8252902 | ID=MS.gene51549.t1.exon6;Parent=MS.gene51549.t1 |
| chr1.3 | CDS | 8252902 | 8252981 | 8252902 | ID=cds.MS.gene51549.t1;Parent=MS.gene51549.t1 |
| chr1.3 | exon | 8252689 | 8252804 | 8252689 | ID=MS.gene51549.t1.exon7;Parent=MS.gene51549.t1 |
| chr1.3 | CDS | 8252689 | 8252804 | 8252689 | ID=cds.MS.gene51549.t1;Parent=MS.gene51549.t1 |
| chr1.3 | exon | 8252394 | 8252508 | 8252394 | ID=MS.gene51549.t1.exon8;Parent=MS.gene51549.t1 |
| chr1.3 | CDS | 8252394 | 8252508 | 8252394 | ID=cds.MS.gene51549.t1;Parent=MS.gene51549.t1 |
| chr1.3 | exon | 8252145 | 8252250 | 8252145 | ID=MS.gene51549.t1.exon9;Parent=MS.gene51549.t1 |
| chr1.3 | CDS | 8252145 | 8252250 | 8252145 | ID=cds.MS.gene51549.t1;Parent=MS.gene51549.t1 |
| Gene Sequence |
| Protein sequence |
