AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039458

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039458.t1 MTR_1g014140 98.521 541 8 0 1 541 1 541 0.0 1103
MS.gene039458.t1 MTR_5g028360 70.826 545 138 4 1 541 62 589 0.0 771
MS.gene039458.t1 MTR_4g100920 25.506 494 286 16 87 536 86 541 4.05e-32 130
MS.gene039458.t1 MTR_8g102050 30.961 281 174 8 271 538 275 548 4.86e-28 118
MS.gene039458.t1 MTR_7g101050 31.560 282 173 10 271 538 298 573 4.66e-27 115
MS.gene039458.t1 MTR_2g036600 24.082 490 323 15 83 533 109 588 2.66e-23 104
MS.gene039458.t1 MTR_4g127770 22.403 491 321 15 87 533 601 1075 3.76e-20 95.1
MS.gene039458.t1 MTR_2g036600 23.214 448 292 14 125 533 13 447 3.25e-17 84.7
MS.gene039458.t1 MTR_8g007295 22.490 498 296 18 90 533 111 572 9.92e-16 80.5
MS.gene039458.t1 MTR_4g127790 23.249 357 238 10 209 532 32 385 3.66e-15 77.8
MS.gene039458.t1 MTR_8g011530 23.019 265 191 7 278 534 367 626 2.29e-11 67.0
MS.gene039458.t1 MTR_4g052070 27.559 254 151 9 92 333 72 304 3.20e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039458.t1 AT4G31180 64.452 557 180 4 3 541 2 558 0.0 733
MS.gene039458.t1 AT4G31180 64.452 557 180 4 3 541 2 558 0.0 733
MS.gene039458.t1 AT4G26870 65.631 515 171 4 28 541 23 532 0.0 693
MS.gene039458.t1 AT5G56680 30.882 272 168 8 278 536 303 567 2.71e-29 122
MS.gene039458.t1 AT4G17300 25.751 466 251 15 122 536 161 582 2.28e-28 119
MS.gene039458.t1 AT4G17300 25.751 466 251 15 122 536 141 562 2.36e-28 119
MS.gene039458.t1 AT1G70980 29.304 273 173 7 278 536 300 566 3.20e-25 110
MS.gene039458.t1 AT3G13490 22.334 497 293 17 94 533 136 596 1.70e-17 86.3

Find 138 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTACATCGATTCTTTC+AGG 0.151574 6.1:-38256991 MS.gene039458:intron
CAGCTTTGCGGCATCCTTCT+TGG 0.168840 6.1:+38260191 None:intergenic
ATTCCAGCCGCTCCTATTAA+AGG 0.200895 6.1:-38259790 MS.gene039458:CDS
TTCTTAGTCATCAGAGAAAA+TGG 0.252860 6.1:-38259928 MS.gene039458:CDS
CAAACAAATTAACACCTTTA+GGG 0.270476 6.1:+38258550 None:intergenic
TTCCGCATCCAGTCTCAAAT+TGG 0.276912 6.1:-38259208 MS.gene039458:CDS
ATGTCAATATGTGGTGATTT+TGG 0.279212 6.1:-38258884 MS.gene039458:CDS
CGGAAAATTCCTTGATTTGC+TGG 0.282793 6.1:+38259226 None:intergenic
TCAAAAGAGTTACTGTAGTT+TGG 0.284688 6.1:+38257301 None:intergenic
GATCCCCTTGCTGTCAATTA+TGG 0.290000 6.1:-38260102 MS.gene039458:CDS
TATGTAAGCCGCAGAGTATT+TGG 0.299031 6.1:+38258366 None:intergenic
TGAAATTGAGAAGGCCATTC+AGG 0.299926 6.1:-38259535 MS.gene039458:intron
TGTTGTGAGGCACCTTTAAT+AGG 0.308209 6.1:+38259778 None:intergenic
AGGCATCTGTGCGAGTTTAC+AGG 0.319353 6.1:-38258809 MS.gene039458:CDS
CAAAAGAGTTACTGTAGTTT+GGG 0.335107 6.1:+38257302 None:intergenic
CACCGTACAGTGCTTGGTTC+AGG 0.346864 6.1:-38259902 MS.gene039458:CDS
CACAATACAGTTTCCTCACT+TGG 0.354867 6.1:+38259616 None:intergenic
CAGAAGATTCCTTTACTCAT+AGG 0.359787 6.1:-38258829 MS.gene039458:CDS
CACACTCCTAAGTTGATTGC+TGG 0.375345 6.1:-38258995 MS.gene039458:CDS
GTCCAGTCGTTGACATTGAC+AGG 0.393463 6.1:+38260045 None:intergenic
TAGCAAGGCATTGTATAAAA+TGG 0.394303 6.1:+38257331 None:intergenic
AGGTGGCGGCGGCAACTTCT+CGG 0.397158 6.1:+38260154 None:intergenic
GTACCACCACACGGTGGCTT+TGG 0.402704 6.1:-38256818 MS.gene039458:CDS
ACAACTTGTTCGTGTGAATC+AGG 0.411639 6.1:-38259287 MS.gene039458:CDS
CAAAGGGCAACCTGCATGCC+TGG 0.419819 6.1:-38258933 MS.gene039458:CDS
TACAGGTCTTGATGTTGAAA+TGG 0.423398 6.1:-38258792 MS.gene039458:CDS
CAAGAAGGATGCCGCAAAGC+TGG 0.423709 6.1:-38260190 MS.gene039458:CDS
AGGGTGGAGCTGCTGTCTTT+AGG 0.428133 6.1:-38258964 MS.gene039458:CDS
CTTTGCGGCATCCTTCTTGG+AGG 0.431699 6.1:+38260194 None:intergenic
GGAGTAGAGATTGAACCTTT+TGG 0.442706 6.1:-38257551 MS.gene039458:CDS
CATTGACAGGGGTCTTCGAT+TGG 0.443151 6.1:+38260058 None:intergenic
AACACCTTTAGGGGTTCAAA+CGG 0.444877 6.1:+38258560 None:intergenic
ATCTGCGGACTCACTAAATC+AGG 0.450583 6.1:+38259874 None:intergenic
CTTGATTTGCTGGTGTTCGC+AGG 0.452358 6.1:+38259236 None:intergenic
GCCCTCCCACGGATTAGAAC+CGG 0.456675 6.1:+38259985 None:intergenic
GCAGCATCCTCGATATTAAT+CGG 0.461821 6.1:+38259570 None:intergenic
TGGAGCTGCTGTCTTTAGGC+TGG 0.464922 6.1:-38258960 MS.gene039458:CDS
GATTAAGAAACATTATTATG+AGG 0.466183 6.1:-38258768 MS.gene039458:intron
TTACATTTCCAATTTGAGAC+TGG 0.471274 6.1:+38259200 None:intergenic
AAAGCCATCTTCTTCCCAAC+TGG 0.471305 6.1:+38259949 None:intergenic
TATTAAAGGTGCCTCACAAC+AGG 0.473545 6.1:-38259776 MS.gene039458:intron
CGGTGGCTTTGGAGTAGGCT+TGG 0.490259 6.1:-38256807 MS.gene039458:CDS
TTAGGCGAGGAGATAATATC+AGG 0.491304 6.1:-38257088 MS.gene039458:intron
TGAGGCTCTCAATGATTCAC+TGG 0.499024 6.1:-38260016 MS.gene039458:CDS
TGGTTTCACCGTACAGTGCT+TGG 0.499781 6.1:-38259908 MS.gene039458:CDS
AAAATGGTCTTACAGCCAAC+GGG 0.502027 6.1:+38257347 None:intergenic
GTCTTACAGCCAACGGGTAC+CGG 0.506627 6.1:+38257353 None:intergenic
TCAGTATTCAAGTCACCAAA+AGG 0.506705 6.1:+38257536 None:intergenic
CTAGATCCAGCAATCAACTT+AGG 0.510006 6.1:+38258989 None:intergenic
TTTAATAGGAGCGGCTGGAA+TGG 0.513685 6.1:+38259792 None:intergenic
TTCCAATTTGAGACTGGATG+CGG 0.513725 6.1:+38259206 None:intergenic
GAGTCTATTGTCGATGTCGA+AGG 0.513770 6.1:-38259823 MS.gene039458:CDS
GCACCTTTAATAGGAGCGGC+TGG 0.516328 6.1:+38259787 None:intergenic
CACAAGCTATTCGACCAGTT+GGG 0.517268 6.1:-38259963 MS.gene039458:CDS
GCACAAGCTATTCGACCAGT+TGG 0.517849 6.1:-38259964 MS.gene039458:CDS
TCGACCAGTTGGGAAGAAGA+TGG 0.523002 6.1:-38259953 MS.gene039458:CDS
ACACCTTTAGGGGTTCAAAC+GGG 0.524064 6.1:+38258561 None:intergenic
CAGCCAACGGGTACCGGTGA+AGG 0.524085 6.1:+38257359 None:intergenic
CTGCGGCTTACATATGAAGA+AGG 0.526092 6.1:-38258357 MS.gene039458:CDS
AATGAATATATATACCTGAA+TGG 0.529761 6.1:+38259521 None:intergenic
GAAACTGTATTGTGTGAGTA+AGG 0.532678 6.1:-38259607 MS.gene039458:CDS
AAACAAATTAACACCTTTAG+GGG 0.533347 6.1:+38258551 None:intergenic
GAATAGCTTGTGCCCTCCCA+CGG 0.535699 6.1:+38259974 None:intergenic
CTGCGAACACCAGCAAATCA+AGG 0.537117 6.1:-38259235 MS.gene039458:CDS
GAAGTTGAGGTGACTGAGCC+AGG 0.538658 6.1:+38258915 None:intergenic
AGAAAGGAAACTAGGCCAGC+TGG 0.539715 6.1:-38257510 MS.gene039458:CDS
TCTTTAGGCTGGACTACAAA+GGG 0.542694 6.1:-38258949 MS.gene039458:CDS
CGATGTAGCAGAGGTGGCGG+CGG 0.543849 6.1:+38260143 None:intergenic
CCACACGGTGGCTTTGGAGT+AGG 0.547341 6.1:-38256812 MS.gene039458:CDS
AACAAGCCGGTTCTAATCCG+TGG 0.547533 6.1:-38259991 MS.gene039458:CDS
TTTGAACACAAAATGTAAGA+AGG 0.547679 6.1:-38258609 MS.gene039458:CDS
CCCCTGTCAATGTCAACGAC+TGG 0.551263 6.1:-38260047 MS.gene039458:CDS
TAAAATGGTCTTACAGCCAA+CGG 0.552316 6.1:+38257346 None:intergenic
TCGATATTAATCGGCAGAGT+AGG 0.553228 6.1:+38259579 None:intergenic
GGTGACTGAGCCAGGCATGC+AGG 0.555621 6.1:+38258923 None:intergenic
TCGATTGGAGCTCAATGAGC+GGG 0.557785 6.1:+38260073 None:intergenic
GACATTTGCTTGTGAAGTTG+AGG 0.558674 6.1:+38258902 None:intergenic
GCACAGATGCCTATGAGTAA+AGG 0.560403 6.1:+38258820 None:intergenic
CACAAGCAAATGTCAATATG+TGG 0.561198 6.1:-38258893 MS.gene039458:CDS
AGTCGATGTAGCAGAGGTGG+CGG 0.572655 6.1:+38260140 None:intergenic
CAGAGTTCTATATCCTTCAC+CGG 0.573477 6.1:-38257372 MS.gene039458:CDS
ATTAATCGGCAGAGTAGGAA+TGG 0.575600 6.1:+38259584 None:intergenic
TAGTTTGGGTTGTCATAGCA+AGG 0.575643 6.1:+38257316 None:intergenic
GAAGAACGTGCACAAGCTTG+CGG 0.577219 6.1:-38257034 MS.gene039458:CDS
TTTATCCACGTGACCCACTC+AGG 0.577438 6.1:-38256733 MS.gene039458:CDS
GTCTTTAGGCTGGACTACAA+AGG 0.579932 6.1:-38258950 MS.gene039458:CDS
AGACTCACGGCTGAGAGCGG+CGG 0.581736 6.1:+38259840 None:intergenic
TGCACAAGCTTGCGGCATTG+AGG 0.583418 6.1:-38257026 MS.gene039458:CDS
AATCATTGAGAGCCTCAACT+CGG 0.583678 6.1:+38260022 None:intergenic
ACTGAAGCAGAAAGGAAACT+AGG 0.584857 6.1:-38257518 MS.gene039458:CDS
GAGAGTCGATGTAGCAGAGG+TGG 0.585897 6.1:+38260137 None:intergenic
TACTCTGCCGATTAATATCG+AGG 0.589627 6.1:-38259577 MS.gene039458:CDS
TCCAGTCGTTGACATTGACA+GGG 0.592334 6.1:+38260046 None:intergenic
AGAGAGAGTCGATGTAGCAG+AGG 0.593608 6.1:+38260134 None:intergenic
ACTTGAATACTGAAGCAGAA+AGG 0.595013 6.1:-38257526 MS.gene039458:CDS
TGATTTAGTGAGTCCGCAGA+TGG 0.596877 6.1:-38259872 MS.gene039458:CDS
GTACCCGTTTGAACCCCTAA+AGG 0.597654 6.1:-38258564 MS.gene039458:intron
ATCATTGAGAGCCTCAACTC+GGG 0.599803 6.1:+38260023 None:intergenic
CAACGACTGGACCCGAGTTG+AGG 0.600329 6.1:-38260034 MS.gene039458:CDS
TCAAGAGCCGACACTGTCAT+CGG 0.603493 6.1:-38260244 MS.gene039458:CDS
GATCCTTCCGATGACAGTGT+CGG 0.605021 6.1:+38260237 None:intergenic
TGAGGCACCTTTAATAGGAG+CGG 0.608618 6.1:+38259783 None:intergenic
TATCCTTCACCGGTACCCGT+TGG 0.609544 6.1:-38257362 MS.gene039458:CDS
GCCGGTTCTAATCCGTGGGA+GGG 0.610769 6.1:-38259986 MS.gene039458:CDS
TTCGATTGGAGCTCAATGAG+CGG 0.611035 6.1:+38260072 None:intergenic
CAGCAATCAACTTAGGAGTG+TGG 0.611888 6.1:+38258996 None:intergenic
TGATTCACTGGAGAACAAGC+CGG 0.613416 6.1:-38260004 MS.gene039458:CDS
GCGGCAAATTTCACCATCTG+CGG 0.614321 6.1:+38259859 None:intergenic
ATTGCTGGATCTAGTGAGGG+TGG 0.614640 6.1:-38258980 MS.gene039458:CDS
ATACCATAATTGACAGCAAG+GGG 0.614733 6.1:+38260099 None:intergenic
ACAAGCCGGTTCTAATCCGT+GGG 0.615482 6.1:-38259990 MS.gene039458:CDS
TATTGTCGATGTCGAAGGTG+TGG 0.616371 6.1:-38259818 MS.gene039458:CDS
ATCATGGTGCAATCCTGAGT+GGG 0.620490 6.1:+38256720 None:intergenic
AATAGACTCACGGCTGAGAG+CGG 0.623488 6.1:+38259837 None:intergenic
AGCCGGTTCTAATCCGTGGG+AGG 0.623958 6.1:-38259987 MS.gene039458:CDS
AAGTGAAGTTGAAATTGAGA+AGG 0.624126 6.1:-38259544 MS.gene039458:CDS
GAGCCGACACTGTCATCGGA+AGG 0.625324 6.1:-38260240 MS.gene039458:CDS
TAAGAAGGATCTCGAAGCTG+TGG 0.629352 6.1:-38258594 MS.gene039458:CDS
GTTGATTGCTGGATCTAGTG+AGG 0.632210 6.1:-38258984 MS.gene039458:CDS
CAATACCATAATTGACAGCA+AGG 0.634292 6.1:+38260097 None:intergenic
CGTGTAGTAATGCTCTTCTG+TGG 0.635161 6.1:-38256782 MS.gene039458:CDS
TGCCTGAACCAAGCACTGTA+CGG 0.635520 6.1:+38259900 None:intergenic
ATCATAACCAACCTGTTGTG+AGG 0.639858 6.1:+38259765 None:intergenic
AGAAGGTATTCAGATGCTCA+AGG 0.641602 6.1:-38258340 MS.gene039458:intron
TTGATTGCTGGATCTAGTGA+GGG 0.644845 6.1:-38258983 MS.gene039458:CDS
ACTCCAAAGCCACCGTGTGG+TGG 0.646949 6.1:+38256815 None:intergenic
CATCATGGTGCAATCCTGAG+TGG 0.650761 6.1:+38256719 None:intergenic
CGACATCGACAATAGACTCA+CGG 0.651944 6.1:+38259827 None:intergenic
GAATCTTCTGCTCTAAACAC+AGG 0.652142 6.1:+38258842 None:intergenic
AGATATGGTGTACCACCACA+CGG 0.671410 6.1:-38256827 MS.gene039458:CDS
TATAGGTTGAAATCCAAGTG+AGG 0.674003 6.1:-38259629 MS.gene039458:intron
GCAATCCTGAGTGGGTCACG+TGG 0.689157 6.1:+38256728 None:intergenic
AATACCATAATTGACAGCAA+GGG 0.690003 6.1:+38260098 None:intergenic
TGGCGGCGGCAACTTCTCGG+CGG 0.706873 6.1:+38260157 None:intergenic
CCTACTCCAAAGCCACCGTG+TGG 0.729566 6.1:+38256812 None:intergenic
CCAGTCGTTGACATTGACAG+GGG 0.731951 6.1:+38260047 None:intergenic
AGTATCTTCCAAATACTCTG+CGG 0.740430 6.1:-38258374 MS.gene039458:CDS
TATGGTGTACCACCACACGG+TGG 0.820152 6.1:-38256824 MS.gene039458:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAATATTAGAGAAAAT+AGG + chr6.1:38257810-38257829 None:intergenic 15.0%
!! ATTATATAAATGTCATTGAA+AGG - chr6.1:38258926-38258945 MS.gene039458:CDS 15.0%
!! TTTCAATTTAATTCAAGAAA+AGG - chr6.1:38259149-38259168 MS.gene039458:intron 15.0%
!! TTTCTTGAATTAAATTGAAA+AGG + chr6.1:38259149-38259168 None:intergenic 15.0%
!!! GATTTTGATTTTGATTATAA+TGG - chr6.1:38257310-38257329 MS.gene039458:CDS 15.0%
!! AAATTGATGAAAATGTACTT+GGG - chr6.1:38258968-38258987 MS.gene039458:CDS 20.0%
!! AACCAAATAATTGTAACTAT+TGG - chr6.1:38259119-38259138 MS.gene039458:intron 20.0%
!! AATAGTTACAATTATTTGGT+TGG + chr6.1:38259120-38259139 None:intergenic 20.0%
!! AATGAATATATATACCTGAA+TGG + chr6.1:38257464-38257483 None:intergenic 20.0%
!! ACCAAATAATTGTAACTATT+GGG - chr6.1:38259120-38259139 MS.gene039458:intron 20.0%
!! ACTGTAACTATGATATATAT+AGG - chr6.1:38259332-38259351 MS.gene039458:intron 20.0%
!! GATTAAGAAACATTATTATG+AGG - chr6.1:38258214-38258233 MS.gene039458:intron 20.0%
!! TAAATTGATGAAAATGTACT+TGG - chr6.1:38258967-38258986 MS.gene039458:CDS 20.0%
!! TAACTATGATATATATAGGA+TGG - chr6.1:38259336-38259355 MS.gene039458:intron 20.0%
!! TCAATTACAACATTTCTAAT+CGG + chr6.1:38257488-38257507 None:intergenic 20.0%
!! TGTAATTCTATTTATAGGTA+TGG - chr6.1:38259585-38259604 MS.gene039458:CDS 20.0%
!! TTTAAACTTTACAACAAGAT+TGG + chr6.1:38258876-38258895 None:intergenic 20.0%
!!! CAATTTATTTGTTTTGTAGT+GGG - chr6.1:38258493-38258512 MS.gene039458:intron 20.0%
!!! CATTTCTTAAGTTAGTTTAT+CGG + chr6.1:38257895-38257914 None:intergenic 20.0%
!!! TCAATTTATTTGTTTTGTAG+TGG - chr6.1:38258492-38258511 MS.gene039458:intron 20.0%
!!! TCAATTTTACAAAATAGACA+GGG + chr6.1:38258769-38258788 None:intergenic 20.0%
!!! TCTATTTTGTAAAATTGAGA+GGG - chr6.1:38258771-38258790 MS.gene039458:CDS 20.0%
!!! TCTGGTTATAATGATTTTAT+GGG - chr6.1:38260089-38260108 MS.gene039458:CDS 20.0%
!!! TGTTGTTTTGTTTAATATAC+TGG - chr6.1:38257614-38257633 MS.gene039458:intron 20.0%
! AAACAAATTAACACCTTTAG+GGG + chr6.1:38258434-38258453 None:intergenic 25.0%
! AAAGGACATAGTTATTTGAT+TGG - chr6.1:38259167-38259186 MS.gene039458:intron 25.0%
! ACATTATTATGAGGTACATT+TGG - chr6.1:38258223-38258242 MS.gene039458:intron 25.0%
! ATCAGAAACAAAAAGCAAAA+AGG - chr6.1:38256765-38256784 MS.gene039458:CDS 25.0%
! CAAACAAATTAACACCTTTA+GGG + chr6.1:38258435-38258454 None:intergenic 25.0%
! CCAAATAATTGTAACTATTG+GGG - chr6.1:38259121-38259140 MS.gene039458:intron 25.0%
! GATAAACAAACAAATGTGAT+AGG - chr6.1:38258706-38258725 MS.gene039458:intron 25.0%
! GTTCAATGTCTTTGTTAATA+CGG - chr6.1:38260039-38260058 MS.gene039458:CDS 25.0%
! TATAAGATTAAACTGTACAC+AGG + chr6.1:38258826-38258845 None:intergenic 25.0%
! TCGACTGTAATTCTATTTAT+AGG - chr6.1:38259580-38259599 MS.gene039458:CDS 25.0%
! TGATTGATCATTTACAGATA+TGG - chr6.1:38260140-38260159 MS.gene039458:CDS 25.0%
! TTCAATGTCTTTGTTAATAC+GGG - chr6.1:38260040-38260059 MS.gene039458:CDS 25.0%
! TTTAGTCATTTCATTGATGA+TGG - chr6.1:38259047-38259066 MS.gene039458:intron 25.0%
! TTTGAACACAAAATGTAAGA+AGG - chr6.1:38258373-38258392 MS.gene039458:CDS 25.0%
! TTTGTTAGTTGTGATTGTTT+AGG - chr6.1:38257288-38257307 MS.gene039458:CDS 25.0%
!! AACTTAAGAAATGCATTTTG+CGG - chr6.1:38257902-38257921 MS.gene039458:intron 25.0%
!! AATGCTTTGTTATGACAATT+TGG - chr6.1:38259750-38259769 MS.gene039458:intron 25.0%
!! ACTGATACTTTTGTGTTTTT+TGG - chr6.1:38258303-38258322 MS.gene039458:intron 25.0%
!! AGTTATAAAAGATTTGAGAC+TGG + chr6.1:38259515-38259534 None:intergenic 25.0%
!! CTAAATGAGATCTCATTTTA+TGG + chr6.1:38259032-38259051 None:intergenic 25.0%
!! CTATTTTGTAAAATTGAGAG+GGG - chr6.1:38258772-38258791 MS.gene039458:CDS 25.0%
!! CTCAATTTTACAAAATAGAC+AGG + chr6.1:38258770-38258789 None:intergenic 25.0%
!! CTCTGGTTATAATGATTTTA+TGG - chr6.1:38260088-38260107 MS.gene039458:CDS 25.0%
!! CTGGTTATAATGATTTTATG+GGG - chr6.1:38260090-38260109 MS.gene039458:CDS 25.0%
!! GTCTATTTTGTAAAATTGAG+AGG - chr6.1:38258770-38258789 MS.gene039458:CDS 25.0%
!! GTTATAAAAGATTTGAGACT+GGG + chr6.1:38259514-38259533 None:intergenic 25.0%
!! GTTATGATATCTTGTTACTT+AGG - chr6.1:38257232-38257251 MS.gene039458:intron 25.0%
!! TGGAATTTTCAAAAATTGGA+GGG + chr6.1:38259100-38259119 None:intergenic 25.0%
!! TGGTTGGAATTTTCAAAAAT+TGG + chr6.1:38259104-38259123 None:intergenic 25.0%
!! TTGGAATTTTCAAAAATTGG+AGG + chr6.1:38259101-38259120 None:intergenic 25.0%
!!! CTAAAGGTGTTAATTTGTTT+GGG - chr6.1:38258434-38258453 MS.gene039458:intron 25.0%
!!! TGATCAATCATTTAGTTTTC+TGG + chr6.1:38260130-38260149 None:intergenic 25.0%
!!! TTCCTCTTTTAGTTAGTTTT+GGG - chr6.1:38259252-38259271 MS.gene039458:CDS 25.0%
!!! TTGATTATAATGGTGTTATG+TGG - chr6.1:38257320-38257339 MS.gene039458:CDS 25.0%
!!! TTTCCTCTTTTAGTTAGTTT+TGG - chr6.1:38259251-38259270 MS.gene039458:CDS 25.0%
AAGTGAAGTTGAAATTGAGA+AGG - chr6.1:38257438-38257457 MS.gene039458:intron 30.0%
AATACCATAATTGACAGCAA+GGG + chr6.1:38256887-38256906 None:intergenic 30.0%
ACAAAGACATTGAACATGAT+AGG + chr6.1:38260034-38260053 None:intergenic 30.0%
ACACACATCTTTAATCAGAA+AGG + chr6.1:38257590-38257609 None:intergenic 30.0%
CAAAAGAGTTACTGTAGTTT+GGG + chr6.1:38259683-38259702 None:intergenic 30.0%
CCAAACAAATTAACACCTTT+AGG + chr6.1:38258436-38258455 None:intergenic 30.0%
CCCCAATAGTTACAATTATT+TGG + chr6.1:38259124-38259143 None:intergenic 30.0%
TCAAAAGAGTTACTGTAGTT+TGG + chr6.1:38259684-38259703 None:intergenic 30.0%
TTCTTAGTCATCAGAGAAAA+TGG - chr6.1:38257054-38257073 MS.gene039458:CDS 30.0%
! ATGTCAATATGTGGTGATTT+TGG - chr6.1:38258098-38258117 MS.gene039458:intron 30.0%
! TATGGAAGTACAAACACATT+TGG + chr6.1:38259819-38259838 None:intergenic 30.0%
! TCTTAAGTTAGTTTATCGGT+AGG + chr6.1:38257891-38257910 None:intergenic 30.0%
! TTACATTTCCAATTTGAGAC+TGG + chr6.1:38257785-38257804 None:intergenic 30.0%
!! ATACTTTTGTGTTTTTTGGC+AGG - chr6.1:38258307-38258326 MS.gene039458:intron 30.0%
!! CCTAAAGGTGTTAATTTGTT+TGG - chr6.1:38258433-38258452 MS.gene039458:intron 30.0%
!! TAGCAAGGCATTGTATAAAA+TGG + chr6.1:38259654-38259673 None:intergenic 30.0%
!! TTCATTGATGATGGTAGTTT+GGG - chr6.1:38259056-38259075 MS.gene039458:intron 30.0%
!! TTTCATTGATGATGGTAGTT+TGG - chr6.1:38259055-38259074 MS.gene039458:intron 30.0%
!!! ATTACTTTTCTAAAACCAGC+TGG + chr6.1:38259490-38259509 None:intergenic 30.0%
!!! GTTGATGGTGATTTTTTAAC+TGG - chr6.1:38257659-38257678 MS.gene039458:intron 30.0%
!!! TATGTGGTTTTGTTCTCTAT+AGG - chr6.1:38257336-38257355 MS.gene039458:CDS 30.0%
!!! TTTAGTTAGTTTTGGGAGTT+TGG - chr6.1:38259259-38259278 MS.gene039458:CDS 30.0%
AAATTGTCGAGGGACATAAT+AGG - chr6.1:38258276-38258295 MS.gene039458:intron 35.0%
AACTATTGTTGAGGAATTCC+TGG - chr6.1:38259222-38259241 MS.gene039458:CDS 35.0%
ACTATTGTTGAGGAATTCCT+GGG - chr6.1:38259223-38259242 MS.gene039458:CDS 35.0%
ACTTGAATACTGAAGCAGAA+AGG - chr6.1:38259456-38259475 MS.gene039458:intron 35.0%
AGTATCTTCCAAATACTCTG+CGG - chr6.1:38258608-38258627 MS.gene039458:CDS 35.0%
ATACCATAATTGACAGCAAG+GGG + chr6.1:38256886-38256905 None:intergenic 35.0%
CAAATGTGATAGGATGATGA+TGG - chr6.1:38258716-38258735 MS.gene039458:intron 35.0%
CAAGTTAGTGACACTTGTTT+AGG - chr6.1:38259194-38259213 MS.gene039458:intron 35.0%
CAATACCATAATTGACAGCA+AGG + chr6.1:38256888-38256907 None:intergenic 35.0%
CACAAGCAAATGTCAATATG+TGG - chr6.1:38258089-38258108 MS.gene039458:intron 35.0%
CACCATCAACATTCATGTAA+GGG + chr6.1:38257649-38257668 None:intergenic 35.0%
CAGAAGATTCCTTTACTCAT+AGG - chr6.1:38258153-38258172 MS.gene039458:intron 35.0%
CTCCCAAAACTAACTAAAAG+AGG + chr6.1:38259257-38259276 None:intergenic 35.0%
CTTTGTTAATACGGGTGTTT+AGG - chr6.1:38260048-38260067 MS.gene039458:CDS 35.0%
GAAAATGTACTTGGGTAAAC+AGG - chr6.1:38258976-38258995 MS.gene039458:CDS 35.0%
GAAACTGTATTGTGTGAGTA+AGG - chr6.1:38257375-38257394 MS.gene039458:CDS 35.0%
GAAGATACTGCACATTCATA+GGG + chr6.1:38258597-38258616 None:intergenic 35.0%
GGAATTCCTCAACAATAGTT+AGG + chr6.1:38259222-38259241 None:intergenic 35.0%
TAAAAGAGGAAAAATACCCC+AGG + chr6.1:38259243-38259262 None:intergenic 35.0%
TACAGGTCTTGATGTTGAAA+TGG - chr6.1:38258190-38258209 MS.gene039458:intron 35.0%
TAGGTTCCTAACTATTGTTG+AGG - chr6.1:38259213-38259232 MS.gene039458:CDS 35.0%
TCACCATCAACATTCATGTA+AGG + chr6.1:38257650-38257669 None:intergenic 35.0%
TCAGTATTCAAGTCACCAAA+AGG + chr6.1:38259449-38259468 None:intergenic 35.0%
! CCATAAAAGCTGAAGCTTTT+GGG - chr6.1:38259834-38259853 MS.gene039458:CDS 35.0%
! CTATTCAATCCTTGTTGCTT+AGG - chr6.1:38259876-38259895 MS.gene039458:CDS 35.0%
! GAGTAATGATTTTGCTTTGC+AGG - chr6.1:38259403-38259422 MS.gene039458:intron 35.0%
! GCACGCAATTAATCATGTTT+TGG - chr6.1:38259774-38259793 MS.gene039458:intron 35.0%
! TAAAATGGTCTTACAGCCAA+CGG + chr6.1:38259639-38259658 None:intergenic 35.0%
! TATAGGTTGAAATCCAAGTG+AGG - chr6.1:38257353-38257372 MS.gene039458:CDS 35.0%
! TCCATAAAAGCTGAAGCTTT+TGG - chr6.1:38259833-38259852 MS.gene039458:CDS 35.0%
! TCTTTTGATGTCTTCATTCG+AGG - chr6.1:38259696-38259715 MS.gene039458:intron 35.0%
! TTTGCGTTTGAAATTGTCGA+GGG - chr6.1:38258266-38258285 MS.gene039458:intron 35.0%
! TTTTGTAAAATTGAGAGGGG+TGG - chr6.1:38258775-38258794 MS.gene039458:CDS 35.0%
!! TCATTGATGATGGTAGTTTG+GGG - chr6.1:38259057-38259076 MS.gene039458:intron 35.0%
!!! TTGTGTTTTTTGGCAGGTTA+TGG - chr6.1:38258313-38258332 MS.gene039458:intron 35.0%
AATCATTGAGAGCCTCAACT+CGG + chr6.1:38256963-38256982 None:intergenic 40.0%
ACTGAAGCAGAAAGGAAACT+AGG - chr6.1:38259464-38259483 MS.gene039458:intron 40.0%
ATAACCAGAGCTCAGTAAGA+GGG + chr6.1:38260078-38260097 None:intergenic 40.0%
ATCATAACCAACCTGTTGTG+AGG + chr6.1:38257220-38257239 None:intergenic 40.0%
ATTAATCGGCAGAGTAGGAA+TGG + chr6.1:38257401-38257420 None:intergenic 40.0%
CACAATACAGTTTCCTCACT+TGG + chr6.1:38257369-38257388 None:intergenic 40.0%
CAGAGTTCTATATCCTTCAC+CGG - chr6.1:38259610-38259629 MS.gene039458:CDS 40.0%
CAGGACCAATCTCAAAAACA+CGG + chr6.1:38258124-38258143 None:intergenic 40.0%
CTACAATCAAGATGAGAGTG+TGG - chr6.1:38257522-38257541 MS.gene039458:CDS 40.0%
CTAGATCCAGCAATCAACTT+AGG + chr6.1:38257996-38258015 None:intergenic 40.0%
CTATTGTTGAGGAATTCCTG+GGG - chr6.1:38259224-38259243 MS.gene039458:CDS 40.0%
CTCCCTTACATGAATGTTGA+TGG - chr6.1:38257644-38257663 MS.gene039458:intron 40.0%
GACAGGGATAAAAGACGTAA+AGG + chr6.1:38258753-38258772 None:intergenic 40.0%
GACATTTGCTTGTGAAGTTG+AGG + chr6.1:38258083-38258102 None:intergenic 40.0%
GCACGTTCTTCCAAAAATTC+AGG + chr6.1:38259939-38259958 None:intergenic 40.0%
GCAGCATCCTCGATATTAAT+CGG + chr6.1:38257415-38257434 None:intergenic 40.0%
GGAAGATACTGCACATTCAT+AGG + chr6.1:38258598-38258617 None:intergenic 40.0%
TATAACCAGAGCTCAGTAAG+AGG + chr6.1:38260079-38260098 None:intergenic 40.0%
TCATTACTCGCTGCTAAACA+AGG + chr6.1:38259392-38259411 None:intergenic 40.0%
TCGATATTAATCGGCAGAGT+AGG + chr6.1:38257406-38257425 None:intergenic 40.0%
TCTTTAGGCTGGACTACAAA+GGG - chr6.1:38258033-38258052 MS.gene039458:intron 40.0%
TGAAATTGAGAAGGCCATTC+AGG - chr6.1:38257447-38257466 MS.gene039458:intron 40.0%
TTAGGCGAGGAGATAATATC+AGG - chr6.1:38259894-38259913 MS.gene039458:CDS 40.0%
TTGATTGCTGGATCTAGTGA+GGG - chr6.1:38257999-38258018 MS.gene039458:intron 40.0%
! AAAATGGTCTTACAGCCAAC+GGG + chr6.1:38259638-38259657 None:intergenic 40.0%
! AACACCTTTAGGGGTTCAAA+CGG + chr6.1:38258425-38258444 None:intergenic 40.0%
! ACAACTTGTTCGTGTGAATC+AGG - chr6.1:38257695-38257714 MS.gene039458:intron 40.0%
! ACACATTTGGAGAAGCATGA+TGG + chr6.1:38259806-38259825 None:intergenic 40.0%
! ATGCATTTTGCGGTGTGATA+CGG - chr6.1:38257912-38257931 MS.gene039458:intron 40.0%
! CCCAAAAGCTTCAGCTTTTA+TGG + chr6.1:38259837-38259856 None:intergenic 40.0%
! GAATCTTCTGCTCTAAACAC+AGG + chr6.1:38258143-38258162 None:intergenic 40.0%
! GATTTTGCTTTGCAGGAAGT+TGG - chr6.1:38259410-38259429 MS.gene039458:intron 40.0%
! GGAGTAGAGATTGAACCTTT+TGG - chr6.1:38259431-38259450 MS.gene039458:intron 40.0%
! GTTGCTGCTTGTAAGTTTGT+TGG - chr6.1:38257857-38257876 MS.gene039458:intron 40.0%
! GTTTGCGTTTGAAATTGTCG+AGG - chr6.1:38258265-38258284 MS.gene039458:intron 40.0%
! TACTCTGCCGATTAATATCG+AGG - chr6.1:38257405-38257424 MS.gene039458:intron 40.0%
! TATCCACGTGCCTGAATTTT+TGG - chr6.1:38259926-38259945 MS.gene039458:CDS 40.0%
! TATGTAAGCCGCAGAGTATT+TGG + chr6.1:38258619-38258638 None:intergenic 40.0%
! TGTTGTGAGGCACCTTTAAT+AGG + chr6.1:38257207-38257226 None:intergenic 40.0%
! TTCCAATTTGAGACTGGATG+CGG + chr6.1:38257779-38257798 None:intergenic 40.0%
!! AGAAGGTATTCAGATGCTCA+AGG - chr6.1:38258642-38258661 MS.gene039458:CDS 40.0%
!! ATGTGATAGGATGATGATGG+CGG - chr6.1:38258719-38258738 MS.gene039458:intron 40.0%
!! CGGAAAATTCCTTGATTTGC+TGG + chr6.1:38257759-38257778 None:intergenic 40.0%
!! CTGCTTACATCGATTCTTTC+AGG - chr6.1:38259991-38260010 MS.gene039458:CDS 40.0%
!! TAGTTTGGGTTGTCATAGCA+AGG + chr6.1:38259669-38259688 None:intergenic 40.0%
!! TATTAAAGGTGCCTCACAAC+AGG - chr6.1:38257206-38257225 MS.gene039458:intron 40.0%
!! TGGAAGTTTAAGCACTGGTA+GGG - chr6.1:38258795-38258814 MS.gene039458:CDS 40.0%
!!! ATTTTTTAACTGGTGCAGGC+TGG - chr6.1:38257669-38257688 MS.gene039458:intron 40.0%
!!! GGTGATTTTTTAACTGGTGC+AGG - chr6.1:38257665-38257684 MS.gene039458:intron 40.0%
!!! TTTGGCCGTGTTTTTGAGAT+TGG - chr6.1:38258116-38258135 MS.gene039458:intron 40.0%
AAAGCCATCTTCTTCCCAAC+TGG + chr6.1:38257036-38257055 None:intergenic 45.0%
AAGCAAAAAGGCCTCCAAGA+AGG - chr6.1:38256777-38256796 MS.gene039458:CDS 45.0%
AGATATGGTGTACCACCACA+CGG - chr6.1:38260155-38260174 MS.gene039458:CDS 45.0%
ATCATTGAGAGCCTCAACTC+GGG + chr6.1:38256962-38256981 None:intergenic 45.0%
ATCTGCGGACTCACTAAATC+AGG + chr6.1:38257111-38257130 None:intergenic 45.0%
ATTCCAGCCGCTCCTATTAA+AGG - chr6.1:38257192-38257211 MS.gene039458:intron 45.0%
CACAAGCTATTCGACCAGTT+GGG - chr6.1:38257019-38257038 MS.gene039458:CDS 45.0%
CAGCAATCAACTTAGGAGTG+TGG + chr6.1:38257989-38258008 None:intergenic 45.0%
CGACATCGACAATAGACTCA+CGG + chr6.1:38257158-38257177 None:intergenic 45.0%
CGTGTAGTAATGCTCTTCTG+TGG - chr6.1:38260200-38260219 MS.gene039458:CDS 45.0%
CTGCGGCTTACATATGAAGA+AGG - chr6.1:38258625-38258644 MS.gene039458:CDS 45.0%
CTTCCAAAAATTCAGGCACG+TGG + chr6.1:38259932-38259951 None:intergenic 45.0%
GAGTCTATTGTCGATGTCGA+AGG - chr6.1:38257159-38257178 MS.gene039458:intron 45.0%
GCACAGATGCCTATGAGTAA+AGG + chr6.1:38258165-38258184 None:intergenic 45.0%
GTCTTTAGGCTGGACTACAA+AGG - chr6.1:38258032-38258051 MS.gene039458:intron 45.0%
GTTGATTGCTGGATCTAGTG+AGG - chr6.1:38257998-38258017 MS.gene039458:intron 45.0%
TAACCAGAGCTCAGTAAGAG+GGG + chr6.1:38260077-38260096 None:intergenic 45.0%
TAAGAAGGATCTCGAAGCTG+TGG - chr6.1:38258388-38258407 MS.gene039458:intron 45.0%
TATTGTCGATGTCGAAGGTG+TGG - chr6.1:38257164-38257183 MS.gene039458:intron 45.0%
TCCAGTCGTTGACATTGACA+GGG + chr6.1:38256939-38256958 None:intergenic 45.0%
TGAGGCTCTCAATGATTCAC+TGG - chr6.1:38256966-38256985 MS.gene039458:intron 45.0%
TGATTCACTGGAGAACAAGC+CGG - chr6.1:38256978-38256997 MS.gene039458:intron 45.0%
TGATTTAGTGAGTCCGCAGA+TGG - chr6.1:38257110-38257129 MS.gene039458:intron 45.0%
TTCCGCATCCAGTCTCAAAT+TGG - chr6.1:38257774-38257793 MS.gene039458:intron 45.0%
TTCGATTGGAGCTCAATGAG+CGG + chr6.1:38256913-38256932 None:intergenic 45.0%
TTTAATAGGAGCGGCTGGAA+TGG + chr6.1:38257193-38257212 None:intergenic 45.0%
! ACACCTTTAGGGGTTCAAAC+GGG + chr6.1:38258424-38258443 None:intergenic 45.0%
! GATCCCCTTGCTGTCAATTA+TGG - chr6.1:38256880-38256899 MS.gene039458:intron 45.0%
! TGAGGCACCTTTAATAGGAG+CGG + chr6.1:38257202-38257221 None:intergenic 45.0%
!! CACACTCCTAAGTTGATTGC+TGG - chr6.1:38257987-38258006 MS.gene039458:intron 45.0%
!! GTGGAAGTTTAAGCACTGGT+AGG - chr6.1:38258794-38258813 MS.gene039458:CDS 45.0%
AATAGACTCACGGCTGAGAG+CGG + chr6.1:38257148-38257167 None:intergenic 50.0%
AGAAAGGAAACTAGGCCAGC+TGG - chr6.1:38259472-38259491 MS.gene039458:intron 50.0%
AGAGAGAGTCGATGTAGCAG+AGG + chr6.1:38256851-38256870 None:intergenic 50.0%
AGGCATCTGTGCGAGTTTAC+AGG - chr6.1:38258173-38258192 MS.gene039458:intron 50.0%
AGGGGTGGAAGTTTAAGCAC+TGG - chr6.1:38258790-38258809 MS.gene039458:CDS 50.0%
ATCTCCTCGCCTAAGCAACA+AGG + chr6.1:38259888-38259907 None:intergenic 50.0%
ATTGCTGGATCTAGTGAGGG+TGG - chr6.1:38258002-38258021 MS.gene039458:intron 50.0%
CATTGACAGGGGTCTTCGAT+TGG + chr6.1:38256927-38256946 None:intergenic 50.0%
CCAGTCGTTGACATTGACAG+GGG + chr6.1:38256938-38256957 None:intergenic 50.0%
CTGCGAACACCAGCAAATCA+AGG - chr6.1:38257747-38257766 MS.gene039458:intron 50.0%
GAAGAACGTGCACAAGCTTG+CGG - chr6.1:38259948-38259967 MS.gene039458:CDS 50.0%
GATCCTTCCGATGACAGTGT+CGG + chr6.1:38256748-38256767 None:intergenic 50.0%
GCACAAGCTATTCGACCAGT+TGG - chr6.1:38257018-38257037 MS.gene039458:CDS 50.0%
GCGGCAAATTTCACCATCTG+CGG + chr6.1:38257126-38257145 None:intergenic 50.0%
GTACCCGTTTGAACCCCTAA+AGG - chr6.1:38258418-38258437 MS.gene039458:intron 50.0%
GTCCAGTCGTTGACATTGAC+AGG + chr6.1:38256940-38256959 None:intergenic 50.0%
TCAAGAGCCGACACTGTCAT+CGG - chr6.1:38256738-38256757 MS.gene039458:CDS 50.0%
TCGACCAGTTGGGAAGAAGA+TGG - chr6.1:38257029-38257048 MS.gene039458:CDS 50.0%
TCGATTGGAGCTCAATGAGC+GGG + chr6.1:38256912-38256931 None:intergenic 50.0%
TGGTTTCACCGTACAGTGCT+TGG - chr6.1:38257074-38257093 MS.gene039458:CDS 50.0%
TTGCGGTGTGATACGGTGTT+GGG - chr6.1:38257919-38257938 MS.gene039458:intron 50.0%
TTTATCCACGTGACCCACTC+AGG - chr6.1:38260249-38260268 MS.gene039458:CDS 50.0%
TTTGCGGTGTGATACGGTGT+TGG - chr6.1:38257918-38257937 MS.gene039458:intron 50.0%
! AACAAGCCGGTTCTAATCCG+TGG - chr6.1:38256991-38257010 MS.gene039458:intron 50.0%
! ACAAGCCGGTTCTAATCCGT+GGG - chr6.1:38256992-38257011 MS.gene039458:CDS 50.0%
! CAATCCTTGTTGCTTAGGCG+AGG - chr6.1:38259881-38259900 MS.gene039458:CDS 50.0%
! TGCCTGAACCAAGCACTGTA+CGG + chr6.1:38257085-38257104 None:intergenic 50.0%
!! AAAGGTGCCTCACAACAGGT+TGG - chr6.1:38257210-38257229 MS.gene039458:intron 50.0%
!! CTTGATTTGCTGGTGTTCGC+AGG + chr6.1:38257749-38257768 None:intergenic 50.0%
!!! GCGTTGCTTTTCCAGCTTTG+CGG + chr6.1:38256806-38256825 None:intergenic 50.0%
AGGGTGGAGCTGCTGTCTTT+AGG - chr6.1:38258018-38258037 MS.gene039458:intron 55.0%
AGTCGATGTAGCAGAGGTGG+CGG + chr6.1:38256845-38256864 None:intergenic 55.0%
CAAGAAGGATGCCGCAAAGC+TGG - chr6.1:38256792-38256811 MS.gene039458:CDS 55.0%
CACCGTACAGTGCTTGGTTC+AGG - chr6.1:38257080-38257099 MS.gene039458:CDS 55.0%
CAGCTTTGCGGCATCCTTCT+TGG + chr6.1:38256794-38256813 None:intergenic 55.0%
CCCCTGTCAATGTCAACGAC+TGG - chr6.1:38256935-38256954 MS.gene039458:intron 55.0%
CTTTGCGGCATCCTTCTTGG+AGG + chr6.1:38256791-38256810 None:intergenic 55.0%
GAAGTTGAGGTGACTGAGCC+AGG + chr6.1:38258070-38258089 None:intergenic 55.0%
GAGAGTCGATGTAGCAGAGG+TGG + chr6.1:38256848-38256867 None:intergenic 55.0%
GCACCTTTAATAGGAGCGGC+TGG + chr6.1:38257198-38257217 None:intergenic 55.0%
GTCTTACAGCCAACGGGTAC+CGG + chr6.1:38259632-38259651 None:intergenic 55.0%
TATCCTTCACCGGTACCCGT+TGG - chr6.1:38259620-38259639 MS.gene039458:CDS 55.0%
TATGGTGTACCACCACACGG+TGG - chr6.1:38260158-38260177 MS.gene039458:CDS 55.0%
TGCACAAGCTTGCGGCATTG+AGG - chr6.1:38259956-38259975 MS.gene039458:CDS 55.0%
TGGAGCTGCTGTCTTTAGGC+TGG - chr6.1:38258022-38258041 MS.gene039458:intron 55.0%
! GAATAGCTTGTGCCCTCCCA+CGG + chr6.1:38257011-38257030 None:intergenic 55.0%
! GGTGTGATACGGTGTTGGGT+AGG - chr6.1:38257923-38257942 MS.gene039458:intron 55.0%
ACTCCAAAGCCACCGTGTGG+TGG + chr6.1:38260170-38260189 None:intergenic 60.0%
CAAAGGGCAACCTGCATGCC+TGG - chr6.1:38258049-38258068 MS.gene039458:intron 60.0%
CAACGACTGGACCCGAGTTG+AGG - chr6.1:38256948-38256967 MS.gene039458:intron 60.0%
CCTACTCCAAAGCCACCGTG+TGG + chr6.1:38260173-38260192 None:intergenic 60.0%
CTGCCCCTCTTACTGAGCTC+TGG - chr6.1:38260071-38260090 MS.gene039458:CDS 60.0%
GAGCCGACACTGTCATCGGA+AGG - chr6.1:38256742-38256761 MS.gene039458:CDS 60.0%
GCAATCCTGAGTGGGTCACG+TGG + chr6.1:38260257-38260276 None:intergenic 60.0%
GTACCACCACACGGTGGCTT+TGG - chr6.1:38260164-38260183 MS.gene039458:CDS 60.0%
! AGCCGGTTCTAATCCGTGGG+AGG - chr6.1:38256995-38257014 MS.gene039458:CDS 60.0%
! GCCGGTTCTAATCCGTGGGA+GGG - chr6.1:38256996-38257015 MS.gene039458:CDS 60.0%
!! CCACACGGTGGCTTTGGAGT+AGG - chr6.1:38260170-38260189 MS.gene039458:CDS 60.0%
!! CGGTGGCTTTGGAGTAGGCT+TGG - chr6.1:38260175-38260194 MS.gene039458:CDS 60.0%
!! GCCCTCCCACGGATTAGAAC+CGG + chr6.1:38257000-38257019 None:intergenic 60.0%
AGACTCACGGCTGAGAGCGG+CGG + chr6.1:38257145-38257164 None:intergenic 65.0%
GGTGACTGAGCCAGGCATGC+AGG + chr6.1:38258062-38258081 None:intergenic 65.0%
! AGGTGGCGGCGGCAACTTCT+CGG + chr6.1:38256831-38256850 None:intergenic 65.0%
! CGATGTAGCAGAGGTGGCGG+CGG + chr6.1:38256842-38256861 None:intergenic 65.0%
!! CAGCCAACGGGTACCGGTGA+AGG + chr6.1:38259626-38259645 None:intergenic 65.0%
TGGCGGCGGCAACTTCTCGG+CGG + chr6.1:38256828-38256847 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 38256721 38260283 38256721 ID=MS.gene039458
chr6.1 mRNA 38256721 38260283 38256721 ID=MS.gene039458.t1;Parent=MS.gene039458
chr6.1 exon 38259777 38260283 38259777 ID=MS.gene039458.t1.exon1;Parent=MS.gene039458.t1
chr6.1 CDS 38259777 38260283 38259777 ID=cds.MS.gene039458.t1;Parent=MS.gene039458.t1
chr6.1 exon 38259536 38259646 38259536 ID=MS.gene039458.t1.exon2;Parent=MS.gene039458.t1
chr6.1 CDS 38259536 38259646 38259536 ID=cds.MS.gene039458.t1;Parent=MS.gene039458.t1
chr6.1 exon 38259204 38259317 38259204 ID=MS.gene039458.t1.exon3;Parent=MS.gene039458.t1
chr6.1 CDS 38259204 38259317 38259204 ID=cds.MS.gene039458.t1;Parent=MS.gene039458.t1
chr6.1 exon 38258769 38259059 38258769 ID=MS.gene039458.t1.exon4;Parent=MS.gene039458.t1
chr6.1 CDS 38258769 38259059 38258769 ID=cds.MS.gene039458.t1;Parent=MS.gene039458.t1
chr6.1 exon 38258565 38258675 38258565 ID=MS.gene039458.t1.exon5;Parent=MS.gene039458.t1
chr6.1 CDS 38258565 38258675 38258565 ID=cds.MS.gene039458.t1;Parent=MS.gene039458.t1
chr6.1 exon 38258341 38258394 38258341 ID=MS.gene039458.t1.exon6;Parent=MS.gene039458.t1
chr6.1 CDS 38258341 38258394 38258341 ID=cds.MS.gene039458.t1;Parent=MS.gene039458.t1
chr6.1 exon 38257500 38257579 38257500 ID=MS.gene039458.t1.exon7;Parent=MS.gene039458.t1
chr6.1 CDS 38257500 38257579 38257500 ID=cds.MS.gene039458.t1;Parent=MS.gene039458.t1
chr6.1 exon 38257287 38257402 38257287 ID=MS.gene039458.t1.exon8;Parent=MS.gene039458.t1
chr6.1 CDS 38257287 38257402 38257287 ID=cds.MS.gene039458.t1;Parent=MS.gene039458.t1
chr6.1 exon 38256992 38257106 38256992 ID=MS.gene039458.t1.exon9;Parent=MS.gene039458.t1
chr6.1 CDS 38256992 38257106 38256992 ID=cds.MS.gene039458.t1;Parent=MS.gene039458.t1
chr6.1 exon 38256721 38256847 38256721 ID=MS.gene039458.t1.exon10;Parent=MS.gene039458.t1
chr6.1 CDS 38256721 38256847 38256721 ID=cds.MS.gene039458.t1;Parent=MS.gene039458.t1
Gene Sequence

>MS.gene039458

ATGTCAACTTCAGAATCTCAAGAGCCGACACTGTCATCGGAAGGATCAGAAACAAAAAGCAAAAAGGCCTCCAAGAAGGATGCCGCAAAGCTGGAAAAGCAACGCCGCCGAGAAGTTGCCGCCGCCACCTCTGCTACATCGACTCTCTCTGTCGAAGATGATCCCCTTGCTGTCAATTATGGTATTGTCCCGCTCATTGAGCTCCAATCGAAGACCCCTGTCAATGTCAACGACTGGACCCGAGTTGAGGCTCTCAATGATTCACTGGAGAACAAGCCGGTTCTAATCCGTGGGAGGGCACAAGCTATTCGACCAGTTGGGAAGAAGATGGCTTTCTTAGTCATCAGAGAAAATGGTTTCACCGTACAGTGCTTGGTTCAGGCACAACCTGATTTAGTGAGTCCGCAGATGGTGAAATTTGCCGCCGCTCTCAGCCGTGAGTCTATTGTCGATGTCGAAGGTGTGGTTTCCATTCCAGCCGCTCCTATTAAAGGTGCCTCACAACAGGTTGGTTATGATATCTTGTTACTTAGGTTTTGTGATTTTGTCAGTGTTTTGAATTTAGAGTTTGTTAGTTGTGATTGTTTAGGATTTTGATTTTGATTATAATGGTGTTATGTGGTTTTGTTCTCTATAGGTTGAAATCCAAGTGAGGAAACTGTATTGTGTGAGTAAGGCCATTCCTACTCTGCCGATTAATATCGAGGATGCTGCTCGAAGTGAAGTTGAAATTGAGAAGGCCATTCAGGTATATATATTCATTACCGATTAGAAATGTTGTAATTGAAGTTGTAGCAAACACTACAATCAAGATGAGAGTGTGGTGTTTCAGCTGCAATTACTATCTTGCATGTCGCAGTTTAAAACCTTTCTGATTAAAGATGTGTGTTTGTTGTTGTTTTGTTTAATATACTGGAACTTGTCTCCCTTACATGAATGTTGATGGTGATTTTTTAACTGGTGCAGGCTGGTGAACAACTTGTTCGTGTGAATCAGGATACACGATTGAATTTTAGAGTACTTGACCTGCGAACACCAGCAAATCAAGGAATTTTCCGCATCCAGTCTCAAATTGGAAATGTAAAGCCTATTTTCTCTAATATTATTCTGACAAGTTTTTTTTTTATTTAATCATAGTTGCTGCTTGTAAGTTTGTTGGAATAATTGCCTACCGATAAACTAACTTAAGAAATGCATTTTGCGGTGTGATACGGTGTTGGGTAGGCGTTCAGACAATTTTTATTAGCTGAAAGCTTTGTTGAAATCCACACTCCTAAGTTGATTGCTGGATCTAGTGAGGGTGGAGCTGCTGTCTTTAGGCTGGACTACAAAGGGCAACCTGCATGCCTGGCTCAGTCACCTCAACTTCACAAGCAAATGTCAATATGTGGTGATTTTGGCCGTGTTTTTGAGATTGGTCCTGTGTTTAGAGCAGAAGATTCCTTTACTCATAGGCATCTGTGCGAGTTTACAGGTCTTGATGTTGAAATGGAGATTAAGAAACATTATTATGAGGTACATTTGGCTAAATGAAAATTTTGAGTGTTTGCGTTTGAAATTGTCGAGGGACATAATAGGATTTACTGATACTTTTGTGTTTTTTGGCAGGTTATGGATGTAGTTGACAAATTGTTTGTTGCTATGTTTGACACTTTGAACACAAAATGTAAGAAGGATCTCGAAGCTGTGGCAAATCAGTACCCGTTTGAACCCCTAAAGGTGTTAATTTGTTTGGGATTTGTTATTTATTATACTATCTGTTTCATATTGTTCAATTTATTTGTTTTGTAGTGGGTATATCATGTTTATTTGTGCAATATACTAATATTAGACGCAAATGAATGCATTGTTACATTTTGTGATCTGATTATATCCCTATGAATGTGCAGTATCTTCCAAATACTCTGCGGCTTACATATGAAGAAGGTATTCAGATGCTCAAGGTAAGCTTAAATATTTCTTAACTAATTAACTTGCAAGTTGTCGATAAACAAACAAATGTGATAGGATGATGATGGCGGTGCTTGAACCTTTACGTCTTTTATCCCTGTCTATTTTGTAAAATTGAGAGGGGTGGAAGTTTAAGCACTGGTAGGGACTAGCCTGTGTACAGTTTAATCTTATAGATTATCATACTGAATATTCACTCTCACCAATCTTGTTGTAAAGTTTAAAATTATGTAATAGTCAAATTATTGAAACTATATTATATAAATGTCATTGAAAGGTGATAGTGATACATAATGTAAATTGATGAAAATGTACTTGGGTAAACAGGATACTAGAACTAATGTCAGCTTCAGATTGTCCATAAAATGAGATCTCATTTAGTCATTTCATTGATGATGGTAGTTTGGGGAACAAATAAAAGCTTTACCCTCCAATTTTTGAAAATTCCAACCAAATAATTGTAACTATTGGGGAGCCTTTTCAATTTAATTCAAGAAAAGGACATAGTTATTTGATTGGTGAGCAAGTTAGTGACACTTGTTTAGGTTCCTAACTATTGTTGAGGAATTCCTGGGGTATTTTTCCTCTTTTAGTTAGTTTTGGGAGTTTGGTTGCACTGTTTAGAATCATTTACATCAAGACTCAGAAAAGAACTTATTCTACTGTAACTATGATATATATAGGATGGTAGAAATTTACAGTATTCTTGTCTTAGTATCCTTGTTTAGCAGCGAGTAATGATTTTGCTTTGCAGGAAGTTGGAGTAGAGATTGAACCTTTTGGTGACTTGAATACTGAAGCAGAAAGGAAACTAGGCCAGCTGGTTTTAGAAAAGTAATTCCCAGTCTCAAATCTTTTATAACTAAAAATTGTCTTTTGTTATTATATGCTATAATTTAAAATTGTTTTTCGACTGTAATTCTATTTATAGGTATGGAACAGAGTTCTATATCCTTCACCGGTACCCGTTGGCTGTAAGACCATTTTATACAATGCCTTGCTATGACAACCCAAACTACAGTAACTCTTTTGATGTCTTCATTCGAGGTAAGCAGAGAAATTAAGTTATTTTGTCATGCAATGCTTTGTTATGACAATTTGGTGCACGCAATTAATCATGTTTTGGTTTTAACCATCATGCTTCTCCAAATGTGTTTGTACTTCCATAAAAGCTGAAGCTTTTGGGTGTCATTTGATTTTAACTTCTATTCAATCCTTGTTGCTTAGGCGAGGAGATAATATCAGGAGCTCAGCGTATCCACGTGCCTGAATTTTTGGAAGAACGTGCACAAGCTTGCGGCATTGAGGTCAAGACAATATCTGCTTACATCGATTCTTTCAGGTAATATATTTACTTATTCCTATCATGTTCAATGTCTTTGTTAATACGGGTGTTTAGGCTGCCCCTCTTACTGAGCTCTGGTTATAATGATTTTATGGGGTAAAAGATTGCTTACCAGAAAACTAAATGATTGATCATTTACAGATATGGTGTACCACCACACGGTGGCTTTGGAGTAGGCTTGGAGCGTGTAGTAATGCTCTTCTGTGGCTTGAACAACATTCGCAAAACATCACTTTATCCACGTGACCCACTCAGGATTGCACCATGA
Protein sequence

>MS.gene039458.t1

MSTSESQEPTLSSEGSETKSKKASKKDAAKLEKQRRREVAAATSATSTLSVEDDPLAVNYGIVPLIELQSKTPVNVNDWTRVEALNDSLENKPVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDLVSPQMVKFAAALSRESIVDVEGVVSIPAAPIKGASQQVEIQVRKLYCVSKAIPTLPINIEDAARSEVEIEKAIQAGEQLVRVNQDTRLNFRVLDLRTPANQGIFRIQSQIGNAFRQFLLAESFVEIHTPKLIAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKKHYYEVMDVVDKLFVAMFDTLNTKCKKDLEAVANQYPFEPLKYLPNTLRLTYEEGIQMLKEVGVEIEPFGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCYDNPNYSNSFDVFIRGEEIISGAQRIHVPEFLEERAQACGIEVKTISAYIDSFRYGVPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP