AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026147

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026147.t1 MTR_1g040195 92.157 459 13 1 1 459 1 436 0.0 859
MS.gene026147.t1 MTR_1g040215 75.922 461 109 2 1 459 1 461 0.0 725
MS.gene026147.t1 MTR_1g040175 74.403 461 113 3 1 459 1 458 0.0 695
MS.gene026147.t1 MTR_1g040315 73.696 460 77 4 1 459 1 417 0.0 671
MS.gene026147.t1 MTR_1g040320 69.348 460 105 2 1 459 1 425 0.0 638
MS.gene026147.t1 MTR_5g076700 59.130 460 178 6 5 459 6 460 0.0 558
MS.gene026147.t1 MTR_7g114560 58.696 460 179 7 5 459 6 459 0.0 551
MS.gene026147.t1 MTR_7g114470 58.478 460 182 5 5 459 7 462 0.0 551
MS.gene026147.t1 MTR_7g114550 57.837 453 176 7 2 446 3 448 0.0 544
MS.gene026147.t1 MTR_7g114520 56.745 467 179 8 5 459 7 462 0.0 538
MS.gene026147.t1 MTR_1g081660 60.046 438 170 5 4 438 13 448 0.0 527
MS.gene026147.t1 MTR_7g114490 58.237 431 172 5 5 430 6 433 0.0 523
MS.gene026147.t1 MTR_0042s0190 69.024 297 90 2 165 459 1 297 1.92e-148 425
MS.gene026147.t1 MTR_7g114510 54.688 320 131 7 147 459 8 320 7.70e-115 340
MS.gene026147.t1 MTR_0042s0190 69.397 232 69 2 230 459 1 232 3.98e-113 332
MS.gene026147.t1 MTR_0502s0010 60.744 242 85 5 100 335 1 238 8.54e-98 293
MS.gene026147.t1 MTR_7g114420 52.000 300 107 7 165 459 1 268 9.25e-98 295
MS.gene026147.t1 MTR_3g035000 60.633 221 60 4 199 417 43 238 2.87e-80 251
MS.gene026147.t1 MTR_8g039950 91.473 129 11 0 1 129 1 129 7.68e-80 243
MS.gene026147.t1 MTR_0042s0230 76.190 147 35 0 1 147 1 147 7.93e-77 237
MS.gene026147.t1 MTR_3g098980 32.710 428 269 9 9 430 14 428 1.49e-76 246
MS.gene026147.t1 MTR_8g096530 32.294 449 286 9 1 444 1 436 5.31e-76 244
MS.gene026147.t1 MTR_7g027175 33.508 382 242 7 14 389 21 396 3.35e-71 232
MS.gene026147.t1 MTR_7g114500 57.333 150 64 0 2 151 3 152 1.65e-59 192
MS.gene026147.t1 MTR_1g053315 31.207 439 279 14 18 438 30 463 2.08e-57 196
MS.gene026147.t1 MTR_3g112180 32.908 392 239 10 19 397 22 402 6.94e-55 189
MS.gene026147.t1 MTR_4g055170 28.698 453 298 9 3 435 6 453 3.36e-54 188
MS.gene026147.t1 MTR_3g051790 56.849 146 63 0 2 147 6 151 3.46e-52 174
MS.gene026147.t1 MTR_4g007540 31.019 432 266 16 16 430 10 426 7.85e-51 178
MS.gene026147.t1 MTR_3g071320 30.716 433 272 11 17 434 13 432 1.63e-49 175
MS.gene026147.t1 MTR_2g105330 29.274 427 277 11 17 430 11 425 1.57e-48 172
MS.gene026147.t1 MTR_2g064495 29.040 427 278 11 17 430 11 425 2.72e-47 169
MS.gene026147.t1 MTR_8g075610 29.318 440 264 11 17 434 2 416 1.39e-46 166
MS.gene026147.t1 MTR_7g084940 28.440 436 291 10 5 430 12 436 3.31e-44 160
MS.gene026147.t1 MTR_7g110610 27.901 405 228 12 5 401 1 349 1.01e-42 155
MS.gene026147.t1 MTR_7g084910 27.723 404 247 12 1 389 11 384 1.53e-39 148
MS.gene026147.t1 MTR_7g085930 28.211 475 265 18 9 432 6 455 2.31e-39 148
MS.gene026147.t1 MTR_6g053810 28.606 409 256 13 56 437 63 462 7.39e-38 144
MS.gene026147.t1 MTR_2g015430 28.675 415 281 12 30 434 25 434 1.15e-37 143
MS.gene026147.t1 MTR_7g085990 27.292 469 277 16 9 432 2 451 1.48e-37 143
MS.gene026147.t1 MTR_4g127650 27.171 449 282 14 17 434 18 452 1.91e-36 140
MS.gene026147.t1 MTR_3g465990 27.033 455 285 16 16 437 17 457 9.66e-36 138
MS.gene026147.t1 MTR_3g465980 27.473 455 283 16 16 437 17 457 4.51e-35 136
MS.gene026147.t1 MTR_3g026950 26.034 411 264 10 13 390 6 409 5.06e-35 135
MS.gene026147.t1 MTR_4g097090 28.112 466 289 17 1 434 1 452 6.93e-35 135
MS.gene026147.t1 MTR_7g086000 26.622 447 270 18 17 422 12 441 7.30e-35 135
MS.gene026147.t1 MTR_3g465930 26.770 452 294 13 16 437 17 461 9.92e-33 129
MS.gene026147.t1 MTR_7g056087 26.351 444 277 14 17 432 12 433 1.56e-32 128
MS.gene026147.t1 MTR_3g465910 26.856 458 283 15 16 437 17 458 9.18e-30 122
MS.gene026147.t1 MTR_3g465880 28.105 459 282 16 16 437 17 464 1.32e-29 120
MS.gene026147.t1 MTR_4g088765 66.250 80 25 1 1 78 1 80 3.38e-29 111
MS.gene026147.t1 MTR_4g013050 24.306 432 264 13 19 430 14 402 3.72e-28 115
MS.gene026147.t1 MTR_3g049150 25.500 400 264 11 17 388 10 403 1.05e-27 115
MS.gene026147.t1 MTR_3g101930 28.409 440 250 20 6 399 4 424 7.67e-27 112
MS.gene026147.t1 MTR_4g094835 25.616 406 258 15 46 428 49 433 3.40e-26 110
MS.gene026147.t1 MTR_3g101960 29.467 319 200 12 23 327 30 337 4.52e-26 110
MS.gene026147.t1 MTR_3g465950 27.988 343 215 10 16 336 17 349 1.97e-25 108
MS.gene026147.t1 MTR_4g094842 26.106 452 278 18 8 428 9 435 2.95e-25 108
MS.gene026147.t1 MTR_4g094838 24.884 430 260 14 23 428 29 419 5.73e-25 107
MS.gene026147.t1 MTR_4g022290 26.515 396 243 14 23 395 31 401 9.74e-25 106
MS.gene026147.t1 MTR_0190s0020 27.460 437 249 20 23 428 30 429 1.51e-24 105
MS.gene026147.t1 MTR_4g094828 25.467 428 275 15 24 428 31 437 3.88e-24 104
MS.gene026147.t1 MTR_4g022800 26.376 436 260 20 23 428 25 429 6.15e-24 104
MS.gene026147.t1 MTR_3g101900 26.847 406 222 17 36 399 44 416 6.41e-24 104
MS.gene026147.t1 MTR_5g090880 26.000 400 235 15 61 425 64 437 7.64e-24 104
MS.gene026147.t1 MTR_3g102020 26.292 445 275 19 24 441 31 449 1.24e-23 103
MS.gene026147.t1 MTR_4g094832 27.809 356 213 14 94 428 85 417 2.30e-23 102
MS.gene026147.t1 MTR_8g041770 24.886 438 275 16 14 428 22 428 2.39e-23 102
MS.gene026147.t1 MTR_5g090830 25.564 399 237 14 61 425 63 435 2.63e-23 102
MS.gene026147.t1 MTR_3g088420 27.378 431 267 18 23 435 25 427 4.07e-23 101
MS.gene026147.t1 MTR_7g026860 27.336 428 262 19 23 428 25 425 4.54e-23 101
MS.gene026147.t1 MTR_5g090810 25.000 408 228 14 61 425 63 435 6.94e-23 101
MS.gene026147.t1 MTR_5g084870 22.980 396 254 14 15 386 9 377 9.33e-23 100
MS.gene026147.t1 MTR_5g084850 24.173 393 252 14 15 386 9 376 2.13e-22 99.8
MS.gene026147.t1 MTR_3g101970 27.000 400 245 16 23 399 30 405 2.48e-22 99.4
MS.gene026147.t1 MTR_8g079710 26.757 441 250 21 23 428 30 432 2.62e-22 99.4
MS.gene026147.t1 MTR_4g022720 25.236 424 273 15 23 428 25 422 2.02e-21 96.7
MS.gene026147.t1 MTR_3g102010 26.977 430 236 18 17 399 21 419 2.32e-21 96.7
MS.gene026147.t1 MTR_4g022670 25.000 432 270 19 23 428 25 428 4.79e-21 95.5
MS.gene026147.t1 MTR_3g465870 28.041 296 189 9 16 294 19 307 4.82e-21 95.5
MS.gene026147.t1 MTR_8g079950 23.555 467 287 18 15 448 9 438 1.52e-20 94.4
MS.gene026147.t1 MTR_3g450690 24.505 404 222 14 64 423 72 436 2.61e-20 93.6
MS.gene026147.t1 MTR_4g022760 28.344 314 196 10 23 321 25 324 3.31e-19 89.7
MS.gene026147.t1 MTR_8g079970 27.044 318 181 15 15 309 9 298 5.05e-19 89.4
MS.gene026147.t1 MTR_4g022825 25.225 444 253 19 23 428 25 427 1.23e-18 88.2
MS.gene026147.t1 MTR_5g084900 23.653 334 202 14 64 386 9 300 1.77e-17 84.0
MS.gene026147.t1 MTR_8g079980 25.000 308 201 12 15 309 9 299 6.55e-17 83.2
MS.gene026147.t1 MTR_7g114417 61.538 52 19 1 89 139 29 80 1.47e-15 72.0
MS.gene026147.t1 MTR_8g467590 23.877 423 253 21 15 399 9 400 1.64e-14 75.9
MS.gene026147.t1 MTR_3g051820 48.958 96 43 4 365 459 1 91 6.64e-14 67.8
MS.gene026147.t1 MTR_6g016815 28.302 212 123 9 59 249 64 267 4.91e-12 67.8
MS.gene026147.t1 MTR_3g102030 25.325 308 185 12 90 385 42 316 7.88e-12 66.6
MS.gene026147.t1 MTR_2g036780 26.846 149 106 1 45 193 47 192 6.95e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026147.t1 AT5G17540 59.020 449 172 9 1 442 1 444 0.0 521
MS.gene026147.t1 AT3G03480 57.111 443 175 11 5 439 15 450 6.80e-168 480
MS.gene026147.t1 AT5G41040 31.663 439 280 9 4 434 12 438 3.07e-78 250
MS.gene026147.t1 AT5G41040 31.663 439 280 9 4 434 28 454 3.10e-78 251
MS.gene026147.t1 AT5G63560 32.957 443 271 11 1 435 1 425 6.83e-77 246
MS.gene026147.t1 AT3G48720 30.892 437 282 11 1 430 1 424 1.36e-71 233
MS.gene026147.t1 AT1G27620 29.754 447 283 12 10 444 10 437 5.83e-55 189
MS.gene026147.t1 AT3G62160 29.540 457 276 16 5 444 1 428 4.44e-52 181
MS.gene026147.t1 AT2G40230 33.333 387 234 11 17 388 13 390 3.30e-50 176
MS.gene026147.t1 AT1G65450 29.386 456 286 13 1 438 12 449 1.37e-49 175
MS.gene026147.t1 AT2G19070 28.837 430 265 13 35 434 29 447 6.27e-48 171
MS.gene026147.t1 AT1G03390 29.861 432 279 14 19 434 32 455 1.76e-47 170
MS.gene026147.t1 AT5G57840 28.182 440 274 11 17 432 11 432 1.98e-47 169
MS.gene026147.t1 AT5G48930 29.224 438 272 14 17 434 11 430 1.75e-45 164
MS.gene026147.t1 AT1G28680 28.345 441 293 14 16 439 11 445 4.29e-45 163
MS.gene026147.t1 AT1G28680 30.814 344 224 10 16 349 11 350 2.14e-41 152
MS.gene026147.t1 AT3G47170 26.694 487 280 17 3 438 6 466 2.70e-41 153
MS.gene026147.t1 AT5G07080 28.085 470 274 16 1 435 6 446 1.09e-39 149
MS.gene026147.t1 AT2G23510 28.112 466 286 17 1 437 5 450 1.70e-37 142
MS.gene026147.t1 AT2G25150 28.322 459 292 16 5 439 9 454 2.51e-36 139
MS.gene026147.t1 AT1G78990 27.318 399 252 12 62 439 65 446 7.76e-31 124
MS.gene026147.t1 AT1G31490 25.823 395 247 13 17 387 14 386 3.02e-30 122
MS.gene026147.t1 AT5G07860 27.069 447 271 15 15 435 24 441 1.44e-28 117
MS.gene026147.t1 AT5G07870 27.093 454 262 17 15 428 24 448 6.70e-27 113
MS.gene026147.t1 AT5G42830 28.774 424 234 16 15 399 23 417 2.21e-26 111
MS.gene026147.t1 AT5G07850 26.942 412 260 15 15 399 24 421 1.86e-25 108
MS.gene026147.t1 AT1G65450 27.946 297 185 8 158 438 2 285 1.89e-25 105
MS.gene026147.t1 AT3G50270 27.119 413 233 15 23 397 30 412 7.30e-25 107
MS.gene026147.t1 AT1G32910 25.926 405 257 15 62 439 63 451 2.67e-24 105
MS.gene026147.t1 AT5G67150 25.513 439 263 18 23 430 30 435 2.75e-23 102
MS.gene026147.t1 AT4G31910 26.862 443 287 13 17 430 17 451 5.21e-23 101
MS.gene026147.t1 AT3G50280 26.382 398 252 17 23 397 28 407 1.60e-22 100
MS.gene026147.t1 AT5G38130 25.628 398 253 14 23 397 48 425 2.38e-22 99.8
MS.gene026147.t1 AT3G26040 23.232 396 261 14 15 388 9 383 2.48e-22 99.4
MS.gene026147.t1 AT1G24430 24.079 407 257 15 43 430 41 414 4.23e-22 98.6
MS.gene026147.t1 AT1G24420 26.434 401 235 17 15 386 11 380 3.13e-21 96.3
MS.gene026147.t1 AT1G24420 26.434 401 235 17 15 386 11 380 3.13e-21 96.3
MS.gene026147.t1 AT5G23970 25.108 462 288 18 13 456 7 428 1.49e-20 94.0
MS.gene026147.t1 AT5G16410 25.287 348 225 12 62 388 89 422 3.52e-18 87.4
MS.gene026147.t1 AT5G67160 26.209 393 259 14 58 435 50 426 8.01e-18 85.9
MS.gene026147.t1 AT3G30280 24.222 450 283 18 6 427 3 422 2.72e-17 84.3
MS.gene026147.t1 AT3G50280 25.641 273 185 10 138 397 10 277 1.01e-14 75.5
MS.gene026147.t1 AT5G23940 24.586 423 239 16 61 438 62 449 1.25e-14 76.3
MS.gene026147.t1 AT3G50290 26.022 269 160 8 138 382 16 269 7.44e-14 72.0
MS.gene026147.t1 AT5G47950 22.799 443 281 18 6 427 3 405 6.82e-13 70.9
MS.gene026147.t1 AT3G23840 27.638 199 119 6 80 269 81 263 5.85e-12 67.8

Find 110 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCATTGTTGGTGATTC+AGG 0.100165 1.2:-24621049 MS.gene026147:intron
TGCGGTGAGGATTTCGAAAT+TGG 0.188633 1.2:+24619042 None:intergenic
GGGTCTTTCCCTGCCATATT+TGG 0.199762 1.2:+24621309 None:intergenic
GCATTCAGTTGCGGATTTAA+TGG 0.222413 1.2:-24618783 MS.gene026147:CDS
TTTGAGGGTCTTACAAATTC+AGG 0.246276 1.2:+24621426 None:intergenic
TTTGAAAACGTAACCCTTCT+TGG 0.271683 1.2:+24621361 None:intergenic
TACAACCGCCGGGAAATTAA+TGG 0.286490 1.2:-24618873 MS.gene026147:CDS
GCGATGGGCCATGTCATCTA+AGG 0.301591 1.2:+24619135 None:intergenic
CACCTAAGGCACTCATGAAT+TGG 0.305227 1.2:+24619296 None:intergenic
ATCCATTTGCAGGTAGGTTA+AGG 0.320236 1.2:-24621239 MS.gene026147:CDS
GGATTCGGAGATGTTGAATT+TGG 0.335824 1.2:-24618695 MS.gene026147:CDS
CGGAGATGTTGAATTTGGTT+GGG 0.342738 1.2:-24618690 MS.gene026147:CDS
GATGTTAGTTTGAAAGAATT+TGG 0.347283 1.2:-24621147 MS.gene026147:CDS
GAAACAATGAAACTAGGTTT+TGG 0.349312 1.2:+24618464 None:intergenic
TTATAAGTATGATCCAAATA+TGG 0.357454 1.2:-24621322 MS.gene026147:CDS
TAAGGGGATAATTGTTCCTT+TGG 0.358085 1.2:+24619153 None:intergenic
TGCTAAAGGAGAGGAAGGTT+TGG 0.383515 1.2:-24618585 MS.gene026147:CDS
AACATTAACGAACCTACTAT+TGG 0.395610 1.2:-24618491 MS.gene026147:CDS
GAATGAACCTTCAATCTTAC+CGG 0.397826 1.2:-24619257 MS.gene026147:CDS
AATGAGCGACGCAGCAGGTT+TGG 0.400466 1.2:-24619320 MS.gene026147:CDS
AAATTAATGGAAAATCGGTT+AGG 0.406964 1.2:-24618860 MS.gene026147:CDS
ATAATTGTTCCTTTGGTGTC+GGG 0.410344 1.2:+24619160 None:intergenic
AAATCCTCACCGCATGCCTT+TGG 0.410833 1.2:-24619033 MS.gene026147:CDS
CTGCTGCGTCGCTCATTGTA+TGG 0.414060 1.2:+24619326 None:intergenic
CGAACTTCTTCGTCAGTGTC+TGG 0.418327 1.2:+24618986 None:intergenic
TCGGAGATGTTGAATTTGGT+TGG 0.425169 1.2:-24618691 MS.gene026147:CDS
TCCATTTGCAGGTAGGTTAA+GGG 0.425790 1.2:-24621238 MS.gene026147:CDS
TGCGGATTTAATGGTTATCA+AGG 0.430701 1.2:-24618774 MS.gene026147:CDS
CCTTAGGTGAAATTTCTTGC+GGG 0.433387 1.2:-24619282 MS.gene026147:CDS
GTCCAATTCATGAGTGCCTT+AGG 0.433988 1.2:-24619298 MS.gene026147:CDS
TCCCTTAACCTACCTGCAAA+TGG 0.437418 1.2:+24621237 None:intergenic
CCGGCGGTTGTAACCGCGAC+GGG 0.439479 1.2:+24618884 None:intergenic
CCCGTCGCGGTTACAACCGC+CGG 0.442423 1.2:-24618884 MS.gene026147:CDS
TCACTGTGAATGATAGAGAT+TGG 0.444139 1.2:+24621460 None:intergenic
AGGTCCTGACAGGAAACTTA+TGG 0.445457 1.2:-24621214 MS.gene026147:CDS
AAATTCAACATCTCCGAATC+CGG 0.449693 1.2:+24618697 None:intergenic
AGTGCTTAACTCTCCATTGT+TGG 0.450887 1.2:-24621058 MS.gene026147:CDS
GATGTGACACGTGCCGGATT+CGG 0.453621 1.2:-24618710 MS.gene026147:CDS
TACTTATAAAATTGTATCAC+TGG 0.463814 1.2:+24621336 None:intergenic
CCGGGAAATTAATGGAAAAT+CGG 0.464289 1.2:-24618865 MS.gene026147:CDS
CGAATTGTTGCTACCTCGGT+TGG 0.466358 1.2:+24619097 None:intergenic
CACTGTGAATGATAGAGATT+GGG 0.466767 1.2:+24621461 None:intergenic
TTGAGGGTCTTACAAATTCA+GGG 0.476311 1.2:+24621427 None:intergenic
CAATCTTACCGGTATGGCAT+AGG 0.482008 1.2:-24619246 MS.gene026147:CDS
GGAGATGTTGAATTTGGTTG+GGG 0.485033 1.2:-24618689 MS.gene026147:CDS
GCATTACCGTAGTAACCGTT+TGG 0.492226 1.2:+24618917 None:intergenic
AATTAATGGAAAATCGGTTA+GGG 0.498804 1.2:-24618859 MS.gene026147:CDS
TGCCATACCGGTAAGATTGA+AGG 0.498825 1.2:+24619250 None:intergenic
AAGTATGATCCAAATATGGC+AGG 0.501582 1.2:-24621318 MS.gene026147:CDS
AGCTCATCCAAACAAGGAAA+AGG 0.507667 1.2:+24621108 None:intergenic
AGCGCGAATTGTTGCTACCT+CGG 0.514290 1.2:+24619093 None:intergenic
CCGTAGTAACCGTTTGGTAA+CGG 0.514696 1.2:+24618923 None:intergenic
CGATGAGTGCATGTTACTCT+TGG 0.517477 1.2:+24619199 None:intergenic
AACTTCTCCATGGCTTGAGC+TGG 0.517646 1.2:+24618545 None:intergenic
GATAATTGTTCCTTTGGTGT+CGG 0.520228 1.2:+24619159 None:intergenic
GGAGGAGTTGGTGCTATACC+TGG 0.535378 1.2:-24618638 MS.gene026147:CDS
AACCTTCAATCTTACCGGTA+TGG 0.535791 1.2:-24619252 MS.gene026147:CDS
TTTAATCCACCGTTACCAAA+CGG 0.537283 1.2:-24618932 MS.gene026147:CDS
GCACCAACTCCTCCTTTAGC+TGG 0.539177 1.2:+24618647 None:intergenic
GTATATGGTGGACCAGCTAA+AGG 0.539427 1.2:-24618659 MS.gene026147:CDS
GCCTTAGGTGAAATTTCTTG+CGG 0.540414 1.2:-24619283 MS.gene026147:CDS
ATGGTTGATTGTAATGATGA+AGG 0.540421 1.2:-24621195 MS.gene026147:CDS
CTCTTTGACGAACTTCTCCA+TGG 0.543009 1.2:+24618535 None:intergenic
TGAGTGCATGTTACTCTTGG+TGG 0.546616 1.2:+24619202 None:intergenic
CAGACATAGATGACCAAGAA+GGG 0.546800 1.2:-24621374 MS.gene026147:CDS
AATCTTACCGGTATGGCATA+GGG 0.551315 1.2:-24619245 MS.gene026147:CDS
CGATGGGCCATGTCATCTAA+GGG 0.551926 1.2:+24619136 None:intergenic
GGTTAAGGGAAGGTCCTGAC+AGG 0.552476 1.2:-24621224 MS.gene026147:CDS
TTGTTTACCAGCTCAAGCCA+TGG 0.552757 1.2:-24618552 MS.gene026147:CDS
AGAAGCTCCCTATGCCATAC+CGG 0.552944 1.2:+24619238 None:intergenic
GGACCAGCTAAAGGAGGAGT+TGG 0.553044 1.2:-24618650 MS.gene026147:CDS
ATAGGGAGCTTCTAAATGCA+AGG 0.554177 1.2:-24619228 MS.gene026147:CDS
CCGTCGCGGTTACAACCGCC+GGG 0.557301 1.2:-24618883 MS.gene026147:CDS
TTTATTATCCATTTGCAGGT+AGG 0.559740 1.2:-24621245 MS.gene026147:CDS
ATTAACGAACCTACTATTGG+TGG 0.562257 1.2:-24618488 MS.gene026147:CDS
TCAACCATAAGTTTCCTGTC+AGG 0.568156 1.2:+24621210 None:intergenic
CCCGCAAGAAATTTCACCTA+AGG 0.570019 1.2:+24619282 None:intergenic
CTCTATCATTCACAGTGAAG+AGG 0.571132 1.2:-24621455 MS.gene026147:CDS
AGTATGATCCAAATATGGCA+GGG 0.572294 1.2:-24621317 MS.gene026147:CDS
CCGTTACCAAACGGTTACTA+CGG 0.573914 1.2:-24618923 MS.gene026147:CDS
AGAATACATGCATTCAGTTG+CGG 0.574989 1.2:-24618792 MS.gene026147:CDS
ATCTGTATTGTCAACGCTCG+TGG 0.581182 1.2:-24618959 MS.gene026147:CDS
GTGTCTGATGTGACACGTGC+CGG 0.585263 1.2:-24618716 MS.gene026147:CDS
AATACCTGAATCACCAACAA+TGG 0.589517 1.2:+24621045 None:intergenic
ACATTAGTTTAAGGTCTACA+AGG 0.590944 1.2:+24618439 None:intergenic
CATACAATGAGCGACGCAGC+AGG 0.597595 1.2:-24619325 MS.gene026147:CDS
AAGGAAGAAACAATGAAACT+AGG 0.603955 1.2:+24618458 None:intergenic
GCGGATTTAATGGTTATCAA+GGG 0.606067 1.2:-24618773 MS.gene026147:CDS
ATATAAAAGCTAGCAACACC+AGG 0.611199 1.2:+24618620 None:intergenic
CCCGGCGGTTGTAACCGCGA+CGG 0.612652 1.2:+24618883 None:intergenic
TCAGACATAGATGACCAAGA+AGG 0.615146 1.2:-24621375 MS.gene026147:CDS
AATTATCCCCTTAGATGACA+TGG 0.615469 1.2:-24619143 MS.gene026147:CDS
CTTCTAACCACAGTAAAATG+TGG 0.618528 1.2:+24618746 None:intergenic
AAAAGTAGCTCATCCAAACA+AGG 0.619216 1.2:+24621102 None:intergenic
TGAGGGTCTTACAAATTCAG+GGG 0.622901 1.2:+24621428 None:intergenic
CGATTGTACGACAACGCCAA+AGG 0.629387 1.2:+24619017 None:intergenic
GAACAAGTTCCCGACACCAA+AGG 0.634936 1.2:-24619169 MS.gene026147:CDS
GCTTGAGCTGGTAAACAAAG+TGG 0.635861 1.2:+24618557 None:intergenic
TCATCCAAACAAGGAAAAGG+AGG 0.640809 1.2:+24621111 None:intergenic
TAGGGAGCTTCTAAATGCAA+GGG 0.644953 1.2:-24619227 MS.gene026147:CDS
TTTGCAGGTAGGTTAAGGGA+AGG 0.651163 1.2:-24621234 MS.gene026147:CDS
TAGGTAACACGTCTCAAGTG+TGG 0.654765 1.2:-24619376 MS.gene026147:CDS
AACGCCAAAGGCATGCGGTG+AGG 0.656317 1.2:+24619029 None:intergenic
GAGATGTTGAATTTGGTTGG+GGG 0.659487 1.2:-24618688 MS.gene026147:CDS
TATGGTGGACCAGCTAAAGG+AGG 0.665823 1.2:-24618656 MS.gene026147:CDS
TTAAGCACTTCTGAAGAACC+AGG 0.667440 1.2:+24621072 None:intergenic
TAGTAACCGTTTGGTAACGG+TGG 0.668062 1.2:+24618926 None:intergenic
GTAACACGTCTCAAGTGTGG+TGG 0.692143 1.2:-24619373 MS.gene026147:CDS
GATGGGCCATGTCATCTAAG+GGG 0.704148 1.2:+24619137 None:intergenic
ACGACAACGCCAAAGGCATG+CGG 0.713965 1.2:+24619024 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGATAACTTTATATTA+TGG - chr1.2:24619090-24619109 MS.gene026147:CDS 10.0%
!!! ATTATTTTAGGTTATTATTT+TGG + chr1.2:24619676-24619695 None:intergenic 10.0%
!!! TAACCTAAAATAATTTTTTT+AGG - chr1.2:24619682-24619701 MS.gene026147:intron 10.0%
!!! TATTTCTTTTGAAAAATTAA+CGG + chr1.2:24619075-24619094 None:intergenic 10.0%
!!! TTTCCTAAAAAAATTATTTT+AGG + chr1.2:24619688-24619707 None:intergenic 10.0%
!! TATTTAATTGCATAAAAAAG+TGG - chr1.2:24619790-24619809 MS.gene026147:intron 15.0%
!!! ATTGTTTTTATAACAATTTG+TGG - chr1.2:24620448-24620467 MS.gene026147:intron 15.0%
!!! TAAACAAATTTTGACTTTTT+AGG - chr1.2:24619203-24619222 MS.gene026147:CDS 15.0%
!! AAAAAAAATTAATTCAGCTG+AGG - chr1.2:24620098-24620117 MS.gene026147:intron 20.0%
!! AATATAGTACGAATATATGT+TGG + chr1.2:24619046-24619065 None:intergenic 20.0%
!! ATATAGTACGAATATATGTT+GGG + chr1.2:24619045-24619064 None:intergenic 20.0%
!! CATATATTCGTACTATATTA+AGG - chr1.2:24619047-24619066 MS.gene026147:CDS 20.0%
!! CTTACATGTAAATTTGTAAA+TGG - chr1.2:24619831-24619850 MS.gene026147:intron 20.0%
!! TACTTATAAAATTGTATCAC+TGG + chr1.2:24618586-24618605 None:intergenic 20.0%
!! TAGACAAAATTTATACATCA+CGG - chr1.2:24620380-24620399 MS.gene026147:intron 20.0%
!! TATATTTCACAAATTTACAG+TGG - chr1.2:24618942-24618961 MS.gene026147:CDS 20.0%
!! TTATAAGTATGATCCAAATA+TGG - chr1.2:24618597-24618616 MS.gene026147:CDS 20.0%
!! TTATTCCTAGGATTTAAATA+TGG + chr1.2:24619608-24619627 None:intergenic 20.0%
!! TTTAGGAAACACAAAATAAT+TGG - chr1.2:24619699-24619718 MS.gene026147:intron 20.0%
!!! AATTTGTTTATAATAGTGAC+CGG + chr1.2:24619193-24619212 None:intergenic 20.0%
!!! ATTTTCCATATTTAAATCCT+AGG - chr1.2:24619600-24619619 MS.gene026147:intron 20.0%
!!! CTTTTCTAATAATATCAACA+GGG + chr1.2:24618633-24618652 None:intergenic 20.0%
!!! TTATTCAACTAGTTAGATTT+TGG - chr1.2:24619334-24619353 MS.gene026147:CDS 20.0%
! AAATTAATGGAAAATCGGTT+AGG - chr1.2:24621059-24621078 MS.gene026147:CDS 25.0%
! AATTAATGGAAAATCGGTTA+GGG - chr1.2:24621060-24621079 MS.gene026147:CDS 25.0%
! ATAAAAATAATTACTCCCTC+CGG - chr1.2:24619171-24619190 MS.gene026147:CDS 25.0%
! ATACCTTTCAAAAATGCTAA+AGG - chr1.2:24621320-24621339 MS.gene026147:CDS 25.0%
! ATATAGTACAAGTGTATGTT+CGG + chr1.2:24618999-24619018 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr1.2:24619228-24619247 MS.gene026147:CDS 25.0%
! CATTCAATAAATGATGTATG+TGG + chr1.2:24619247-24619228 None:intergenic 25.0%
! TTTCTATCGAAAAGAATCTT+AGG - chr1.2:24619647-24619666 MS.gene026147:intron 25.0%
!! AATTTGCTTATAATAGTGAC+CGG - chr1.2:24619302-24619321 MS.gene026147:CDS 25.0%
!! CAAGCACAAATAATTGTTTT+TGG - chr1.2:24619974-24619993 MS.gene026147:intron 25.0%
!! GAAAGTAATTTTACTTCATG+AGG + chr1.2:24618526-24618545 None:intergenic 25.0%
!! GATGTTAGTTTGAAAGAATT+TGG - chr1.2:24618772-24618791 MS.gene026147:CDS 25.0%
!! GCTTTTCTAATAATATCAAC+AGG + chr1.2:24618634-24618653 None:intergenic 25.0%
!! GTTCACAAACAAAATTTTAC+AGG - chr1.2:24619951-24619970 MS.gene026147:intron 25.0%
!! TTGATTGTAACAACACATTT+TGG + chr1.2:24620238-24620257 None:intergenic 25.0%
!! TTTAAGATCAGATACGTATT+TGG + chr1.2:24620131-24620150 None:intergenic 25.0%
!!! GGCACATATATTTTTTTAAG+AGG - chr1.2:24619852-24619871 MS.gene026147:intron 25.0%
AACATTAACGAACCTACTAT+TGG - chr1.2:24621428-24621447 MS.gene026147:CDS 30.0%
AAGGAAGAAACAATGAAACT+AGG + chr1.2:24621464-24621483 None:intergenic 30.0%
AGATTTGTAAATGACACAAG+TGG - chr1.2:24619888-24619907 MS.gene026147:intron 30.0%
ATGGTTGATTGTAATGATGA+AGG - chr1.2:24618724-24618743 MS.gene026147:CDS 30.0%
TTTATTATCCATTTGCAGGT+AGG - chr1.2:24618674-24618693 MS.gene026147:CDS 30.0%
TTTCAAAAATGCTAAAGGAG+AGG - chr1.2:24621325-24621344 MS.gene026147:CDS 30.0%
! CTAGTTAGATTTTGGACTAA+TGG - chr1.2:24619342-24619361 MS.gene026147:CDS 30.0%
! GAAACAATGAAACTAGGTTT+TGG + chr1.2:24621458-24621477 None:intergenic 30.0%
! TCTCCTTTAGCATTTTTGAA+AGG + chr1.2:24621326-24621345 None:intergenic 30.0%
!! CTTGAATTTTGACCATTTGT+AGG - chr1.2:24620524-24620543 MS.gene026147:intron 30.0%
!! GTGTTTTATTATCCATTTGC+AGG - chr1.2:24618670-24618689 MS.gene026147:CDS 30.0%
!!! AGAATTTTTCAAGACACATG+TGG + chr1.2:24619554-24619573 None:intergenic 30.0%
!!! CGAAATTGGATTGTTTTTGT+TGG + chr1.2:24620866-24620885 None:intergenic 30.0%
AAAAATGCTAAAGGAGAGGA+AGG - chr1.2:24621329-24621348 MS.gene026147:CDS 35.0%
AAAAGTAGCTCATCCAAACA+AGG + chr1.2:24618820-24618839 None:intergenic 35.0%
AAATGATTCAAGTGAGGTCA+AGG + chr1.2:24620046-24620065 None:intergenic 35.0%
AAATTCAACATCTCCGAATC+CGG + chr1.2:24621225-24621244 None:intergenic 35.0%
AAGATCAGATACGTATTTGG+TGG + chr1.2:24620128-24620147 None:intergenic 35.0%
AAGTATGATCCAAATATGGC+AGG - chr1.2:24618601-24618620 MS.gene026147:CDS 35.0%
AATACCTGAATCACCAACAA+TGG + chr1.2:24618877-24618896 None:intergenic 35.0%
AATTATCCCCTTAGATGACA+TGG - chr1.2:24620776-24620795 MS.gene026147:intron 35.0%
AGAATACATGCATTCAGTTG+CGG - chr1.2:24621127-24621146 MS.gene026147:CDS 35.0%
AGACACACACTAGAGTTAAA+AGG + chr1.2:24620277-24620296 None:intergenic 35.0%
AGTATGATCCAAATATGGCA+GGG - chr1.2:24618602-24618621 MS.gene026147:CDS 35.0%
AGTTGAATAATTACTCCCTC+CGG + chr1.2:24619324-24619343 None:intergenic 35.0%
ATATAAAAGCTAGCAACACC+AGG + chr1.2:24621302-24621321 None:intergenic 35.0%
ATTAACGAACCTACTATTGG+TGG - chr1.2:24621431-24621450 MS.gene026147:CDS 35.0%
CACTGTGAATGATAGAGATT+GGG + chr1.2:24618461-24618480 None:intergenic 35.0%
CCGGGAAATTAATGGAAAAT+CGG - chr1.2:24621054-24621073 MS.gene026147:CDS 35.0%
CTACACAAATGATTCAAGTG+AGG + chr1.2:24620052-24620071 None:intergenic 35.0%
CTCACTTGAATCATTTGTGT+AGG - chr1.2:24620050-24620069 MS.gene026147:intron 35.0%
CTTCTAACCACAGTAAAATG+TGG + chr1.2:24621176-24621195 None:intergenic 35.0%
GAATGAACCTTCAATCTTAC+CGG - chr1.2:24620662-24620681 MS.gene026147:intron 35.0%
GCGGATTTAATGGTTATCAA+GGG - chr1.2:24621146-24621165 MS.gene026147:CDS 35.0%
TAAGGGGATAATTGTTCCTT+TGG + chr1.2:24620769-24620788 None:intergenic 35.0%
TCACTGTGAATGATAGAGAT+TGG + chr1.2:24618462-24618481 None:intergenic 35.0%
TGCGGATTTAATGGTTATCA+AGG - chr1.2:24621145-24621164 MS.gene026147:CDS 35.0%
TGTTTATAATAGTGACCGGA+GGG + chr1.2:24619189-24619208 None:intergenic 35.0%
TTGAGGGTCTTACAAATTCA+GGG + chr1.2:24618495-24618514 None:intergenic 35.0%
TTGTTTATAATAGTGACCGG+AGG + chr1.2:24619190-24619209 None:intergenic 35.0%
TTTAATCCACCGTTACCAAA+CGG - chr1.2:24620987-24621006 MS.gene026147:intron 35.0%
TTTGAAAACGTAACCCTTCT+TGG + chr1.2:24618561-24618580 None:intergenic 35.0%
TTTGAGGGTCTTACAAATTC+AGG + chr1.2:24618496-24618515 None:intergenic 35.0%
TTTGTAAATGACACAAGTGG+AGG - chr1.2:24619891-24619910 MS.gene026147:intron 35.0%
! ATTTTCCATTAATTTCCCGG+CGG + chr1.2:24621054-24621073 None:intergenic 35.0%
! CCGATTTTCCATTAATTTCC+CGG + chr1.2:24621057-24621076 None:intergenic 35.0%
! GATAATTGTTCCTTTGGTGT+CGG + chr1.2:24620763-24620782 None:intergenic 35.0%
! TCTTGTTTCGTAGAAAGAGT+GGG - chr1.2:24620207-24620226 MS.gene026147:intron 35.0%
! TGCAAGACACTTTTATTCCT+AGG + chr1.2:24619620-24619639 None:intergenic 35.0%
! TTCTTGTTTCGTAGAAAGAG+TGG - chr1.2:24620206-24620225 MS.gene026147:intron 35.0%
!! ATAATTGTTCCTTTGGTGTC+GGG + chr1.2:24620762-24620781 None:intergenic 35.0%
!!! TCATGAGGTGTTTGTTTTGA+GGG + chr1.2:24618511-24618530 None:intergenic 35.0%
!!! TGAAGGTGTTTTGTTCATTG+AGG - chr1.2:24618741-24618760 MS.gene026147:CDS 35.0%
!!! TTCATGAGGTGTTTGTTTTG+AGG + chr1.2:24618512-24618531 None:intergenic 35.0%
!!! TTGGATTGTTTTTGTTGGTG+AGG + chr1.2:24620861-24620880 None:intergenic 35.0%
AACCTTCAATCTTACCGGTA+TGG - chr1.2:24620667-24620686 MS.gene026147:intron 40.0%
AATCTTACCGGTATGGCATA+GGG - chr1.2:24620674-24620693 MS.gene026147:intron 40.0%
ACCGAAGAAAAAAGAGCGAT+GGG + chr1.2:24620802-24620821 None:intergenic 40.0%
AGCTCATCCAAACAAGGAAA+AGG + chr1.2:24618814-24618833 None:intergenic 40.0%
AGTGCTTAACTCTCCATTGT+TGG - chr1.2:24618861-24618880 MS.gene026147:CDS 40.0%
ATAGGGAGCTTCTAAATGCA+AGG - chr1.2:24620691-24620710 MS.gene026147:intron 40.0%
ATCCATTTGCAGGTAGGTTA+AGG - chr1.2:24618680-24618699 MS.gene026147:CDS 40.0%
CAAGTGTATGTTCGGATTTG+CGG + chr1.2:24618991-24619010 None:intergenic 40.0%
CAGACATAGATGACCAAGAA+GGG - chr1.2:24618545-24618564 MS.gene026147:CDS 40.0%
CCTTAGGTGAAATTTCTTGC+GGG - chr1.2:24620637-24620656 MS.gene026147:intron 40.0%
CGAATATATGTTGGGATGAG+TGG + chr1.2:24619037-24619056 None:intergenic 40.0%
CGGAGATGTTGAATTTGGTT+GGG - chr1.2:24621229-24621248 MS.gene026147:CDS 40.0%
CTATTTGCCACAATTCAAGG+AGG - chr1.2:24619478-24619497 MS.gene026147:intron 40.0%
CTCTATCATTCACAGTGAAG+AGG - chr1.2:24618464-24618483 MS.gene026147:CDS 40.0%
GAGATGTTGAATTTGGTTGG+GGG - chr1.2:24621231-24621250 MS.gene026147:CDS 40.0%
GCACTATTTGCCACAATTCA+AGG - chr1.2:24619475-24619494 MS.gene026147:intron 40.0%
GCATTCAGTTGCGGATTTAA+TGG - chr1.2:24621136-24621155 MS.gene026147:CDS 40.0%
GCCTTAGGTGAAATTTCTTG+CGG - chr1.2:24620636-24620655 MS.gene026147:intron 40.0%
GGAGATGTTGAATTTGGTTG+GGG - chr1.2:24621230-24621249 MS.gene026147:CDS 40.0%
GGATCAAGCTATTACATGGT+TGG - chr1.2:24620401-24620420 MS.gene026147:intron 40.0%
GGATTCGGAGATGTTGAATT+TGG - chr1.2:24621224-24621243 MS.gene026147:CDS 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr1.2:24619467-24619486 None:intergenic 40.0%
TAGGGAGCTTCTAAATGCAA+GGG - chr1.2:24620692-24620711 MS.gene026147:intron 40.0%
TCAACCATAAGTTTCCTGTC+AGG + chr1.2:24618712-24618731 None:intergenic 40.0%
TCACGGATCAAGCTATTACA+TGG - chr1.2:24620397-24620416 MS.gene026147:intron 40.0%
TCAGACATAGATGACCAAGA+AGG - chr1.2:24618544-24618563 MS.gene026147:CDS 40.0%
TCATCCAAACAAGGAAAAGG+AGG + chr1.2:24618811-24618830 None:intergenic 40.0%
TCCATTTGCAGGTAGGTTAA+GGG - chr1.2:24618681-24618700 MS.gene026147:CDS 40.0%
TCGGAGATGTTGAATTTGGT+TGG - chr1.2:24621228-24621247 MS.gene026147:CDS 40.0%
TGAGACGTGTTACCTACAAA+TGG + chr1.2:24620539-24620558 None:intergenic 40.0%
TGAGGGTCTTACAAATTCAG+GGG + chr1.2:24618494-24618513 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr1.2:24619306-24619325 MS.gene026147:CDS 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - chr1.2:24619501-24619520 MS.gene026147:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr1.2:24619305-24619324 MS.gene026147:CDS 40.0%
! TCAACCTCCTTTTCCTTGTT+TGG - chr1.2:24618804-24618823 MS.gene026147:CDS 40.0%
! TTAAGCACTTCTGAAGAACC+AGG + chr1.2:24618850-24618869 None:intergenic 40.0%
!!! ATTGTTTTTGTTGGTGAGGC+GGG + chr1.2:24620857-24620876 None:intergenic 40.0%
!!! GAGCTACTTTTTGATGTTCC+TGG - chr1.2:24618829-24618848 MS.gene026147:CDS 40.0%
!!! GATTGTTTTTGTTGGTGAGG+CGG + chr1.2:24620858-24620877 None:intergenic 40.0%
AGGTCCTGACAGGAAACTTA+TGG - chr1.2:24618705-24618724 MS.gene026147:CDS 45.0%
ATCTGTATTGTCAACGCTCG+TGG - chr1.2:24620960-24620979 MS.gene026147:intron 45.0%
CAATCTTACCGGTATGGCAT+AGG - chr1.2:24620673-24620692 MS.gene026147:intron 45.0%
CCCGCAAGAAATTTCACCTA+AGG + chr1.2:24620640-24620659 None:intergenic 45.0%
CCGTAGTAACCGTTTGGTAA+CGG + chr1.2:24620999-24621018 None:intergenic 45.0%
CCGTTACCAAACGGTTACTA+CGG - chr1.2:24620996-24621015 MS.gene026147:intron 45.0%
CGATGAGTGCATGTTACTCT+TGG + chr1.2:24620723-24620742 None:intergenic 45.0%
CTCTTTGACGAACTTCTCCA+TGG + chr1.2:24621387-24621406 None:intergenic 45.0%
GACCGAAGAAAAAAGAGCGA+TGG + chr1.2:24620803-24620822 None:intergenic 45.0%
GCATTACCGTAGTAACCGTT+TGG + chr1.2:24621005-24621024 None:intergenic 45.0%
GCTTGAGCTGGTAAACAAAG+TGG + chr1.2:24621365-24621384 None:intergenic 45.0%
GTCCAATTCATGAGTGCCTT+AGG - chr1.2:24620621-24620640 MS.gene026147:intron 45.0%
GTTTCGTAGAAAGAGTGGGT+GGG - chr1.2:24620211-24620230 MS.gene026147:intron 45.0%
TACAACCGCCGGGAAATTAA+TGG - chr1.2:24621046-24621065 MS.gene026147:intron 45.0%
TAGGTAACACGTCTCAAGTG+TGG - chr1.2:24620543-24620562 MS.gene026147:intron 45.0%
TCCCTTAACCTACCTGCAAA+TGG + chr1.2:24618685-24618704 None:intergenic 45.0%
TGAGGTCAAGGTTGTCTTTG+AGG + chr1.2:24620034-24620053 None:intergenic 45.0%
TGAGTGCATGTTACTCTTGG+TGG + chr1.2:24620720-24620739 None:intergenic 45.0%
TGCCATACCGGTAAGATTGA+AGG + chr1.2:24620672-24620691 None:intergenic 45.0%
TGCGGTGAGGATTTCGAAAT+TGG + chr1.2:24620880-24620899 None:intergenic 45.0%
TGCTAAAGGAGAGGAAGGTT+TGG - chr1.2:24621334-24621353 MS.gene026147:CDS 45.0%
TGTTTCGTAGAAAGAGTGGG+TGG - chr1.2:24620210-24620229 MS.gene026147:intron 45.0%
TTGTTTACCAGCTCAAGCCA+TGG - chr1.2:24621367-24621386 MS.gene026147:CDS 45.0%
TTTGCAGGTAGGTTAAGGGA+AGG - chr1.2:24618685-24618704 MS.gene026147:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - chr1.2:24619495-24619514 MS.gene026147:intron 45.0%
! CACCTAAGGCACTCATGAAT+TGG + chr1.2:24620626-24620645 None:intergenic 45.0%
! GGGTAGACCACATTTTACTG+TGG - chr1.2:24621166-24621185 MS.gene026147:CDS 45.0%
!! CTCTCCATTGTTGGTGATTC+AGG - chr1.2:24618870-24618889 MS.gene026147:CDS 45.0%
!! GTATATGGTGGACCAGCTAA+AGG - chr1.2:24621260-24621279 MS.gene026147:CDS 45.0%
!! TAGTAACCGTTTGGTAACGG+TGG + chr1.2:24620996-24621015 None:intergenic 45.0%
!!! GCCCATCGCTCTTTTTTCTT+CGG - chr1.2:24620798-24620817 MS.gene026147:intron 45.0%
!!! GGTTTTGGACCACCAATAGT+AGG + chr1.2:24621443-24621462 None:intergenic 45.0%
!!! TTTTTTCTTCGGTCCAACCG+AGG - chr1.2:24620809-24620828 MS.gene026147:intron 45.0%
!! ATAAATTAATTAGTTAAAAT+TGG + chr1.2:24620475-24620494 None:intergenic 5.0%
AAATCCTCACCGCATGCCTT+TGG - chr1.2:24620886-24620905 MS.gene026147:intron 50.0%
AACTTCTCCATGGCTTGAGC+TGG + chr1.2:24621377-24621396 None:intergenic 50.0%
AGAAGCTCCCTATGCCATAC+CGG + chr1.2:24620684-24620703 None:intergenic 50.0%
AGCCACACCTCCTTGAATTG+TGG + chr1.2:24619488-24619507 None:intergenic 50.0%
AGCGCGAATTGTTGCTACCT+CGG + chr1.2:24620829-24620848 None:intergenic 50.0%
CGAACTTCTTCGTCAGTGTC+TGG + chr1.2:24620936-24620955 None:intergenic 50.0%
CGAATTGTTGCTACCTCGGT+TGG + chr1.2:24620825-24620844 None:intergenic 50.0%
CGATGGGCCATGTCATCTAA+GGG + chr1.2:24620786-24620805 None:intergenic 50.0%
CGATTGTACGACAACGCCAA+AGG + chr1.2:24620905-24620924 None:intergenic 50.0%
GAACAAGTTCCCGACACCAA+AGG - chr1.2:24620750-24620769 MS.gene026147:intron 50.0%
GATGGGCCATGTCATCTAAG+GGG + chr1.2:24620785-24620804 None:intergenic 50.0%
GGGTCTTTCCCTGCCATATT+TGG + chr1.2:24618613-24618632 None:intergenic 50.0%
GGTTGGGGGAAAGCTGTATA+TGG - chr1.2:24621245-24621264 MS.gene026147:CDS 50.0%
GTAACACGTCTCAAGTGTGG+TGG - chr1.2:24620546-24620565 MS.gene026147:intron 50.0%
TGCCACAATTCAAGGAGGTG+TGG - chr1.2:24619483-24619502 MS.gene026147:intron 50.0%
TGGGGGAAAGCTGTATATGG+TGG - chr1.2:24621248-24621267 MS.gene026147:CDS 50.0%
!! TATGGTGGACCAGCTAAAGG+AGG - chr1.2:24621263-24621282 MS.gene026147:CDS 50.0%
AATGAGCGACGCAGCAGGTT+TGG - chr1.2:24620599-24620618 MS.gene026147:intron 55.0%
CATACAATGAGCGACGCAGC+AGG - chr1.2:24620594-24620613 MS.gene026147:intron 55.0%
CTGCTGCGTCGCTCATTGTA+TGG + chr1.2:24620596-24620615 None:intergenic 55.0%
GATGTGACACGTGCCGGATT+CGG - chr1.2:24621209-24621228 MS.gene026147:CDS 55.0%
GCACCAACTCCTCCTTTAGC+TGG + chr1.2:24621275-24621294 None:intergenic 55.0%
GCGATGGGCCATGTCATCTA+AGG + chr1.2:24620787-24620806 None:intergenic 55.0%
GGACCAGCTAAAGGAGGAGT+TGG - chr1.2:24621269-24621288 MS.gene026147:CDS 55.0%
GGTTAAGGGAAGGTCCTGAC+AGG - chr1.2:24618695-24618714 MS.gene026147:CDS 55.0%
GTGTCTGATGTGACACGTGC+CGG - chr1.2:24621203-24621222 MS.gene026147:CDS 55.0%
! ACGACAACGCCAAAGGCATG+CGG + chr1.2:24620898-24620917 None:intergenic 55.0%
! TGCTTTTGCGTTTCCCGTCG+CGG - chr1.2:24621022-24621041 MS.gene026147:intron 55.0%
!! GGAGGAGTTGGTGCTATACC+TGG - chr1.2:24621281-24621300 MS.gene026147:CDS 55.0%
! AACGCCAAAGGCATGCGGTG+AGG + chr1.2:24620893-24620912 None:intergenic 60.0%
CCCGGCGGTTGTAACCGCGA+CGG + chr1.2:24621039-24621058 None:intergenic 70.0%
CCCGTCGCGGTTACAACCGC+CGG - chr1.2:24621035-24621054 MS.gene026147:intron 70.0%
CCGGCGGTTGTAACCGCGAC+GGG + chr1.2:24621038-24621057 None:intergenic 70.0%
CCGTCGCGGTTACAACCGCC+GGG - chr1.2:24621036-24621055 MS.gene026147:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 24618454 24621487 24618454 ID=MS.gene026147
chr1.2 mRNA 24618454 24621487 24618454 ID=MS.gene026147.t1;Parent=MS.gene026147
chr1.2 exon 24621050 24621487 24621050 ID=MS.gene026147.t1.exon1;Parent=MS.gene026147.t1
chr1.2 CDS 24621050 24621487 24621050 ID=cds.MS.gene026147.t1;Parent=MS.gene026147.t1
chr1.2 exon 24618454 24619395 24618454 ID=MS.gene026147.t1.exon2;Parent=MS.gene026147.t1
chr1.2 CDS 24618454 24619395 24618454 ID=cds.MS.gene026147.t1;Parent=MS.gene026147.t1
Gene Sequence

>MS.gene026147

ATGGCCCAATCTCTATCATTCACAGTGAAGAGGCATGCCCCTGAATTTGTAAGACCCTCAAAACAAACACCTCATGAAGTAAAATTACTTTCAGACATAGATGACCAAGAAGGGTTACGTTTTCAAATTCCAGTGATACAATTTTATAAGTATGATCCAAATATGGCAGGGAAAGACCCTGTTGATATTATTAGAAAAGCATTAGCAAAAACACTTGTGTTTTATTATCCATTTGCAGGTAGGTTAAGGGAAGGTCCTGACAGGAAACTTATGGTTGATTGTAATGATGAAGGTGTTTTGTTCATTGAGGCTGATGCTGATGTTAGTTTGAAAGAATTTGGTGATGCTCTTCAACCTCCTTTTCCTTGTTTGGATGAGCTACTTTTTGATGTTCCTGGTTCTTCAGAAGTGCTTAACTCTCCATTGTTGGTGATTCAGGTATTGTATTGATGTTCTTAATGCATAGTTATTTTGACAAAGCTATACTTTATATTTCACAAATTTACAGTGGTTCATCTTGATTTTTCAATTTCACCGCAAATCCGAACATACACTTGTACTATATGATATTTCAATTTCACCACTCATCCCAACATATATTCGTACTATATTAAGGATCCGTTAATTTTTCAAAAGAAATAGATAACTTTATATTATGGATTATTTGAAAGACTTTCAAGTCAATAAATATATATAAAATTAATAGACTGCGTGCTTATAAAAATAATTACTCCCTCCGGTCACTATTATAAACAAATTTTGACTTTTTAGGTTCATTCAATAAATGATGTATGTGGTCTACAATATAGACCACATACATCATTTATTGAATGAATCTAAAAAGTAAAAATTTGCTTATAATAGTGACCGGAGGGAGTAATTATTCAACTAGTTAGATTTTGGACTAATGGAAGAAGTTAGACTTTCACATCATATTGAAATAATATTTAAAGAGCAATGCTATATCTCTAGAAAAAAAACATCAAGAATTCTTCAAGAATAAAAAGCAACCAATCACAATGCACTATTTGCCACAATTCAAGGAGGTGTGGCTGAAAAATAGGAAGTGGACAAATAAATTATGCAATTAAAACTTGCCACATGTGTCTTGAAAAATTCTTGATGCTATTTTTCTAGATAAACAGCATTTTCCATATTTAAATCCTAGGAATAAAAGTGTCTTGCATTTAGTGTTTCTATCGAAAAGAATCTTAGGAAACCAAAATAATAACCTAAAATAATTTTTTTAGGAAACACAAAATAATTGGTTATTCACAATTATTATTATGAATATCGTTTAAAAGTTCAACTTTCTTATTTACATTAACTATCATCTTATTTAATTGCATAAAAAAGTGGACATTTAATTTGAAGAAACTTACATGTAAATTTGTAAATGGCACATATATTTTTTTAAGAGGATAAATGACACATAGATTTGTAAATGACACAAGTGGAGGATGAAGAGATAGCATCAGTGAAAATTTACAACATGTAGTTCACAAACAAAATTTTACAGGCAAGCACAAATAATTGTTTTTGGATCAAGATTATTTTTATTGATGCTGCGTAGAATTCCTCAAAGACAACCTTGACCTCACTTGAATCATTTGTGTAGGTTAAAATCTACTTTTTATCTTGAACAAAAAAAATTAATTCAGCTGAGGAATACCACCAAATACGTATCTGATCTTAAAAGTATGTTTGCAATAACTTTATTCTTTTTTTTTTTTGAATAATGCAATAACTTTATTCTTGTTTCGTAGAAAGAGTGGGTGGGACCAAAATGTGTTGTTACAATCAATCAATTAATACTTGTTCCTTTTAACTCTAGTGTGTGTCTCAATTTTAAAAATGAAATGCTCATTTGTTATATCTTTCTTTTAGCTGACTTTTATTCATCGTTTAATTAGAATGAATCACAATTAGACAAAATTTATACATCACGGATCAAGCTATTACATGGTTGGTATGAAGTCGATGTCTTATCTCATATTGTTTTTATAACAATTTGTGGTCCAATTTTAACTAATTAATTTATGAAAATAAAATTATTCATTCATTCACATACTTGAATTTTGACCATTTGTAGGTAACACGTCTCAAGTGTGGTGGTTTCATTTTTGCTCTTCGTCTAAACCATACAATGAGCGACGCAGCAGGTTTGGTCCAATTCATGAGTGCCTTAGGTGAAATTTCTTGCGGGATGAATGAACCTTCAATCTTACCGGTATGGCATAGGGAGCTTCTAAATGCAAGGGATCCACCAAGAGTAACATGCACTCATCGTGAATATGAACAAGTTCCCGACACCAAAGGAACAATTATCCCCTTAGATGACATGGCCCATCGCTCTTTTTTCTTCGGTCCAACCGAGGTAGCAACAATTCGCGCTCTTCTCCCGCCTCACCAACAAAAACAATCCAATTTCGAAATCCTCACCGCATGCCTTTGGCGTTGTCGTACAATCGCGTTACAACCAGACACTGACGAAGAAGTTCGCATAATCTGTATTGTCAACGCTCGTGGCAAGTTTAATCCACCGTTACCAAACGGTTACTACGGTAATGCTTTTGCGTTTCCCGTCGCGGTTACAACCGCCGGGAAATTAATGGAAAATCGGTTAGGGTATGCACTAGAGTTAGTTAAAAAAGCAAAATCTGATGTAACTCAAGAATACATGCATTCAGTTGCGGATTTAATGGTTATCAAGGGTAGACCACATTTTACTGTGGTTAGAAGTTATCTTGTGTCTGATGTGACACGTGCCGGATTCGGAGATGTTGAATTTGGTTGGGGGAAAGCTGTATATGGTGGACCAGCTAAAGGAGGAGTTGGTGCTATACCTGGTGTTGCTAGCTTTTATATACCTTTCAAAAATGCTAAAGGAGAGGAAGGTTTGGTTATACCACTTTGTTTACCAGCTCAAGCCATGGAGAAGTTCGTCAAAGAGTTAGATAGTGTGCTTAAGAACAACATTAACGAACCTACTATTGGTGGTCCAAAACCTAGTTTCATTGTTTCTTCCTTGTAG
Protein sequence

>MS.gene026147.t1

MAQSLSFTVKRHAPEFVRPSKQTPHEVKLLSDIDDQEGLRFQIPVIQFYKYDPNMAGKDPVDIIRKALAKTLVFYYPFAGRLREGPDRKLMVDCNDEGVLFIEADADVSLKEFGDALQPPFPCLDELLFDVPGSSEVLNSPLLVIQVTRLKCGGFIFALRLNHTMSDAAGLVQFMSALGEISCGMNEPSILPVWHRELLNARDPPRVTCTHREYEQVPDTKGTIIPLDDMAHRSFFFGPTEVATIRALLPPHQQKQSNFEILTACLWRCRTIALQPDTDEEVRIICIVNARGKFNPPLPNGYYGNAFAFPVAVTTAGKLMENRLGYALELVKKAKSDVTQEYMHSVADLMVIKGRPHFTVVRSYLVSDVTRAGFGDVEFGWGKAVYGGPAKGGVGAIPGVASFYIPFKNAKGEEGLVIPLCLPAQAMEKFVKELDSVLKNNINEPTIGGPKPSFIVSSL