AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030653

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030653.t1 MTR_8g092985 87.678 211 26 0 1 211 1 211 4.37e-126 355
MS.gene030653.t1 MTR_8g092970 80.000 210 35 2 1 210 1 203 1.42e-110 315
MS.gene030653.t1 MTR_8g092930 78.774 212 42 2 1 210 1 211 1.68e-109 313
MS.gene030653.t1 MTR_8g092840 76.995 213 45 2 1 210 1 212 2.14e-108 310
MS.gene030653.t1 MTR_8g092960 73.333 210 48 1 1 210 1 202 9.49e-105 301
MS.gene030653.t1 MTR_8g092990 80.282 213 39 1 1 210 1 213 3.29e-103 297
MS.gene030653.t1 MTR_8g093010 73.488 215 42 6 1 210 1 205 4.07e-103 297
MS.gene030653.t1 MTR_3g095560 59.447 217 75 4 1 209 1 212 5.02e-83 246
MS.gene030653.t1 MTR_3g094000 44.242 165 89 2 32 195 14 176 5.49e-45 147
MS.gene030653.t1 MTR_7g073200 42.771 166 90 3 45 209 17 178 1.96e-41 139
MS.gene030653.t1 MTR_3g116000 47.059 136 68 3 59 192 26 159 5.16e-36 125
MS.gene030653.t1 MTR_5g024730 41.509 159 79 5 58 208 29 181 3.74e-35 124
MS.gene030653.t1 MTR_8g073120 45.652 138 64 5 58 191 22 152 9.82e-33 117
MS.gene030653.t1 MTR_2g035800 36.508 126 77 2 56 181 23 145 5.86e-27 101
MS.gene030653.t1 MTR_4g094725 41.935 124 65 3 61 181 30 149 2.39e-26 99.4
MS.gene030653.t1 MTR_3g071300 31.844 179 98 4 47 211 5 173 7.77e-23 90.9
MS.gene030653.t1 MTR_7g113800 36.667 150 72 7 46 184 29 166 3.23e-20 87.4
MS.gene030653.t1 MTR_6g055030 38.760 129 71 4 66 188 51 177 6.71e-20 86.3
MS.gene030653.t1 MTR_1g043410 28.177 181 97 6 40 203 20 184 2.62e-19 84.7
MS.gene030653.t1 MTR_5g082940 46.053 76 40 1 109 183 73 148 2.81e-19 81.6
MS.gene030653.t1 MTR_2g055790 33.613 119 73 2 66 184 34 146 8.42e-19 80.9
MS.gene030653.t1 MTR_8g023400 46.835 79 39 2 111 188 92 168 9.53e-19 83.2
MS.gene030653.t1 MTR_7g117540 46.667 75 38 1 112 186 77 149 2.81e-18 81.3
MS.gene030653.t1 MTR_3g110190 35.878 131 79 2 60 186 11 140 2.86e-18 82.0
MS.gene030653.t1 MTR_6g087150 37.580 157 75 7 35 181 19 162 4.34e-18 81.6
MS.gene030653.t1 MTR_1g100737 43.373 83 43 1 109 187 90 172 4.58e-18 79.0
MS.gene030653.t1 MTR_5g064990 31.544 149 96 4 53 196 55 202 4.67e-18 81.6
MS.gene030653.t1 MTR_3g099650 34.091 132 80 4 57 184 54 182 5.37e-18 81.6
MS.gene030653.t1 MTR_1g492830 31.496 127 84 1 62 185 9 135 8.84e-18 79.0
MS.gene030653.t1 MTR_1g082550 33.793 145 85 5 46 184 34 173 1.30e-17 80.5
MS.gene030653.t1 MTR_7g116220 41.250 80 45 1 108 185 67 146 1.55e-17 77.0
MS.gene030653.t1 MTR_3g114500 35.897 117 71 2 64 180 1 113 1.56e-17 75.9
MS.gene030653.t1 MTR_4g120270 45.205 73 37 1 108 180 77 146 2.06e-17 78.6
MS.gene030653.t1 MTR_2g096350 58.333 48 20 0 133 180 130 177 6.54e-17 76.3
MS.gene030653.t1 MTR_3g078450 34.259 108 68 2 93 199 58 163 1.59e-16 75.5
MS.gene030653.t1 MTR_4g129420 43.038 79 45 0 106 184 112 190 1.77e-16 77.4
MS.gene030653.t1 MTR_2g436100 41.096 73 42 1 108 180 90 161 3.56e-16 75.5
MS.gene030653.t1 MTR_5g064980 30.488 164 88 5 29 183 36 182 6.41e-16 75.5
MS.gene030653.t1 MTR_4g063070 30.409 171 102 4 40 193 225 395 7.47e-16 75.5
MS.gene030653.t1 MTR_5g030010 30.818 159 91 5 62 205 59 213 9.99e-16 75.1
MS.gene030653.t1 MTR_3g464780 39.744 78 44 1 110 184 101 178 1.15e-15 73.6
MS.gene030653.t1 MTR_5g071930 40.426 94 50 3 110 203 65 152 1.23e-15 72.4
MS.gene030653.t1 MTR_3g091200 27.647 170 105 4 18 180 215 373 1.35e-15 74.7
MS.gene030653.t1 MTR_5g034790 42.105 95 47 3 95 184 97 188 1.38e-15 74.7
MS.gene030653.t1 MTR_4g030070 34.091 88 56 1 101 188 75 160 1.40e-15 72.8
MS.gene030653.t1 MTR_8g066780 30.719 153 91 4 62 203 59 207 1.44e-15 74.3
MS.gene030653.t1 MTR_5g066250 44.578 83 35 2 103 180 126 202 1.52e-15 74.7
MS.gene030653.t1 MTR_3g012550 26.718 131 94 2 52 180 20 150 2.23e-15 71.2
MS.gene030653.t1 MTR_3g078470 34.783 92 59 1 93 183 58 149 3.12e-15 72.0
MS.gene030653.t1 MTR_1g026070 29.915 117 78 1 64 180 1 113 3.62e-15 69.7
MS.gene030653.t1 MTR_3g086700 33.333 123 76 3 64 183 1 120 4.53e-15 70.9
MS.gene030653.t1 MTR_3g100400 45.833 72 38 1 109 180 128 198 5.93e-15 72.8
MS.gene030653.t1 MTR_4g093830 44.286 70 38 1 111 180 126 194 8.69e-15 72.4
MS.gene030653.t1 MTR_8g089880 49.091 55 28 0 136 190 151 205 9.76e-15 71.2
MS.gene030653.t1 MTR_2g009310 60.000 45 18 0 136 180 159 203 1.00e-14 72.4
MS.gene030653.t1 MTR_2g090905 31.538 130 70 3 84 206 10 127 1.06e-14 68.2
MS.gene030653.t1 MTR_5g064890 53.061 49 23 0 136 184 152 200 1.26e-14 71.6
MS.gene030653.t1 MTR_7g116180 38.667 75 44 1 111 183 67 141 1.33e-14 69.3
MS.gene030653.t1 MTR_4g056590 34.831 89 51 3 108 196 97 178 1.42e-14 69.7
MS.gene030653.t1 MTR_3g086730 32.061 131 83 3 64 191 1 128 1.54e-14 70.1
MS.gene030653.t1 MTR_6g007737 33.333 135 76 3 62 183 71 204 1.90e-14 71.2
MS.gene030653.t1 MTR_1g070425 38.667 75 44 1 111 183 68 142 2.21e-14 68.9
MS.gene030653.t1 MTR_8g063660 40.000 85 47 2 104 185 58 141 3.11e-14 70.5
MS.gene030653.t1 MTR_5g026730 58.140 43 18 0 138 180 94 136 5.03e-14 67.8
MS.gene030653.t1 MTR_8g099495 37.179 78 48 1 105 181 313 390 7.13e-14 69.7
MS.gene030653.t1 MTR_2g041200 32.867 143 78 5 44 180 21 151 7.62e-14 67.4
MS.gene030653.t1 MTR_8g074900 40.000 75 40 1 109 183 156 225 7.72e-14 68.2
MS.gene030653.t1 MTR_7g108855 36.957 92 49 2 112 194 67 158 7.80e-14 67.8
MS.gene030653.t1 MTR_1g056350 29.897 97 64 2 106 199 69 164 8.60e-14 67.0
MS.gene030653.t1 MTR_4g108830 42.683 82 42 3 102 181 111 189 1.07e-13 67.0
MS.gene030653.t1 MTR_3g091620 38.961 77 46 1 108 184 98 173 1.07e-13 69.3
MS.gene030653.t1 MTR_4g108830 42.683 82 42 3 102 181 139 217 1.20e-13 67.4
MS.gene030653.t1 MTR_8g032690 40.000 65 36 1 138 202 19 80 1.40e-13 64.7
MS.gene030653.t1 MTR_8g099515 40.845 71 41 1 111 180 309 379 1.45e-13 68.9
MS.gene030653.t1 MTR_5g026720 53.333 45 21 0 136 180 91 135 1.81e-13 65.9
MS.gene030653.t1 MTR_7g076250 36.111 72 46 0 109 180 61 132 1.90e-13 66.6
MS.gene030653.t1 MTR_5g022920 39.474 76 45 1 109 183 159 234 2.19e-13 67.0
MS.gene030653.t1 MTR_5g009190 37.500 80 49 1 102 180 257 336 2.76e-13 67.8
MS.gene030653.t1 MTR_2g090950 59.091 44 18 0 137 180 122 165 2.91e-13 66.6
MS.gene030653.t1 MTR_5g009210 37.500 80 49 1 102 180 278 357 3.72e-13 67.8
MS.gene030653.t1 MTR_4g106680 30.882 136 77 3 60 180 41 174 4.41e-13 67.0
MS.gene030653.t1 MTR_1g070140 38.961 77 45 2 105 180 97 172 4.53e-13 67.4
MS.gene030653.t1 MTR_1g074190 38.272 81 45 2 105 180 93 173 4.60e-13 67.4
MS.gene030653.t1 MTR_7g079290 43.103 58 33 0 133 190 150 207 1.17e-12 64.7
MS.gene030653.t1 MTR_5g092790 33.981 103 64 3 81 180 126 227 1.25e-12 65.1
MS.gene030653.t1 MTR_7g059360 43.103 58 33 0 124 181 144 201 1.35e-12 65.1
MS.gene030653.t1 MTR_6g007670 38.961 77 42 2 107 180 1 75 1.59e-12 65.1
MS.gene030653.t1 MTR_6g007670 42.254 71 41 0 110 180 144 214 5.97e-11 60.5
MS.gene030653.t1 MTR_8g028465 31.250 96 53 2 111 206 90 172 1.76e-12 63.9
MS.gene030653.t1 MTR_5g009200 39.437 71 42 1 111 180 322 392 1.89e-12 65.9
MS.gene030653.t1 MTR_8g071815 55.814 43 19 0 138 180 90 132 2.34e-12 63.2
MS.gene030653.t1 MTR_6g007680 54.545 44 20 0 137 180 65 108 3.87e-12 62.0
MS.gene030653.t1 MTR_4g022410 34.454 119 66 3 62 180 49 155 4.26e-12 62.8
MS.gene030653.t1 MTR_3g078120 32.540 126 78 3 62 180 2 127 6.30e-12 61.6
MS.gene030653.t1 MTR_1g090480 32.258 124 74 3 72 186 28 150 7.23e-12 61.6
MS.gene030653.t1 MTR_4g116460 42.857 70 36 4 114 180 415 483 7.76e-12 63.9
MS.gene030653.t1 MTR_4g116460 42.857 70 36 4 114 180 458 526 7.84e-12 63.9
MS.gene030653.t1 MTR_5g092750 55.814 43 19 0 138 180 185 227 8.59e-12 62.8
MS.gene030653.t1 MTR_2g079320 36.585 82 43 2 109 183 125 204 9.48e-12 62.0
MS.gene030653.t1 MTR_5g076990 40.000 75 42 1 109 180 74 148 1.12e-11 63.2
MS.gene030653.t1 MTR_7g116200 38.028 71 42 1 110 180 67 135 1.19e-11 61.2
MS.gene030653.t1 MTR_6g055030 52.000 50 23 1 140 188 97 146 1.43e-11 62.8
MS.gene030653.t1 MTR_7g079280 27.778 126 69 3 82 206 62 166 1.51e-11 61.2
MS.gene030653.t1 MTR_8g027745 33.784 74 48 1 108 180 283 356 1.59e-11 62.8
MS.gene030653.t1 MTR_1g032440 31.731 104 58 3 87 190 260 350 1.83e-11 62.8
MS.gene030653.t1 MTR_3g081030 39.189 74 43 1 117 190 100 171 1.84e-11 61.6
MS.gene030653.t1 MTR_8g009190 51.020 49 24 0 136 184 103 151 2.03e-11 62.4
MS.gene030653.t1 MTR_3g087900 54.000 50 21 2 136 184 67 115 2.91e-11 59.7
MS.gene030653.t1 MTR_2g044570 40.351 57 34 0 134 190 79 135 3.75e-11 61.6
MS.gene030653.t1 MTR_1g096780 29.365 126 81 5 58 181 159 278 4.15e-11 62.0
MS.gene030653.t1 MTR_7g117350 32.000 75 46 1 111 180 290 364 4.58e-11 61.6
MS.gene030653.t1 MTR_7g117350 32.000 75 46 1 111 180 282 356 4.72e-11 61.6
MS.gene030653.t1 MTR_4g102870 29.286 140 84 3 61 186 225 363 5.40e-11 61.2
MS.gene030653.t1 MTR_3g107995 30.189 106 58 3 94 199 281 370 8.36e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030653.t1 AT1G49230 49.724 181 78 3 11 191 17 184 6.13e-57 179
MS.gene030653.t1 AT1G49220 48.241 199 76 5 21 207 23 206 2.49e-56 179
MS.gene030653.t1 AT1G49210 46.919 211 94 5 8 210 10 210 7.44e-56 177
MS.gene030653.t1 AT1G49200 46.193 197 88 5 21 209 24 210 4.66e-54 172
MS.gene030653.t1 AT3G18773 45.745 188 86 4 6 190 8 182 5.85e-50 162
MS.gene030653.t1 AT5G05280 47.368 152 70 3 46 194 25 169 1.94e-43 144
MS.gene030653.t1 AT3G10910 46.405 153 73 4 38 184 11 160 6.76e-42 140
MS.gene030653.t1 AT1G76410 43.624 149 79 3 44 189 10 156 9.26e-37 127
MS.gene030653.t1 AT1G20823 40.556 180 75 5 11 184 4 157 1.05e-35 125
MS.gene030653.t1 AT2G17450 39.437 142 67 4 59 191 25 156 1.65e-29 108
MS.gene030653.t1 AT5G01880 40.571 175 80 5 12 185 1 152 6.57e-29 106
MS.gene030653.t1 AT4G35480 36.667 150 73 5 59 191 23 167 2.00e-27 103
MS.gene030653.t1 AT5G47610 36.296 135 70 3 46 180 31 149 3.56e-26 99.4
MS.gene030653.t1 AT4G17245 37.600 125 66 3 57 180 32 145 4.12e-25 96.7
MS.gene030653.t1 AT4G09110 33.333 144 86 4 58 199 46 181 1.28e-18 82.4
MS.gene030653.t1 AT4G17905 34.532 139 68 4 62 180 62 197 2.14e-18 82.0
MS.gene030653.t1 AT4G17905 34.532 139 68 4 62 180 88 223 2.43e-18 82.0
MS.gene030653.t1 AT4G40070 32.026 153 97 4 63 210 47 197 3.30e-18 81.6
MS.gene030653.t1 AT1G72310 46.154 78 40 1 107 184 98 173 3.88e-18 81.3
MS.gene030653.t1 AT1G53820 43.617 94 46 4 107 197 91 180 5.57e-18 80.9
MS.gene030653.t1 AT4G09120 32.061 131 84 2 55 183 41 168 6.00e-18 81.3
MS.gene030653.t1 AT1G23980 33.566 143 75 4 60 184 50 190 1.10e-17 80.5
MS.gene030653.t1 AT1G72200 33.083 133 84 3 57 184 58 190 1.25e-17 80.5
MS.gene030653.t1 AT2G35000 35.294 136 73 4 61 184 49 181 1.49e-17 80.1
MS.gene030653.t1 AT1G74410 40.206 97 54 2 87 183 129 221 1.76e-17 78.2
MS.gene030653.t1 AT3G05200 31.690 142 91 3 60 197 46 185 2.60e-17 79.7
MS.gene030653.t1 AT1G04360 32.215 149 83 4 45 180 33 176 4.99e-17 79.0
MS.gene030653.t1 AT1G22500 31.343 134 89 2 54 184 31 164 9.43e-17 78.2
MS.gene030653.t1 AT3G14320 45.349 86 41 3 111 192 63 146 1.40e-16 75.1
MS.gene030653.t1 AT3G03550 66.667 45 15 0 136 180 157 201 1.54e-16 77.4
MS.gene030653.t1 AT4G10160 33.858 127 73 4 63 184 23 143 1.99e-16 75.1
MS.gene030653.t1 AT3G11110 33.803 142 86 3 41 180 14 149 2.03e-16 73.6
MS.gene030653.t1 AT4G15975 39.362 94 55 1 87 180 27 118 2.36e-16 75.1
MS.gene030653.t1 AT3G16720 41.667 84 46 2 107 190 90 170 2.65e-16 76.3
MS.gene030653.t1 AT5G57750 41.333 75 44 0 107 181 91 165 3.02e-16 74.3
MS.gene030653.t1 AT2G20030 48.571 70 35 1 111 180 98 166 3.62e-16 76.3
MS.gene030653.t1 AT5G17600 64.444 45 16 0 136 180 140 184 4.97e-16 75.9
MS.gene030653.t1 AT5G07040 27.612 134 83 3 52 181 14 137 5.38e-16 72.8
MS.gene030653.t1 AT1G35330 31.538 130 77 4 63 183 48 174 6.60e-16 75.1
MS.gene030653.t1 AT5G27420 27.333 150 88 4 65 211 53 184 8.53e-16 75.1
MS.gene030653.t1 AT4G09130 36.957 92 56 1 94 183 74 165 1.25e-15 74.7
MS.gene030653.t1 AT2G27940 35.632 87 54 1 105 191 109 193 1.66e-15 72.8
MS.gene030653.t1 AT4G09100 41.026 78 44 2 105 180 50 127 1.76e-15 70.5
MS.gene030653.t1 AT5G66070 39.560 91 50 2 94 183 135 221 1.81e-15 72.4
MS.gene030653.t1 AT5G66070 39.560 91 50 2 94 183 135 221 1.81e-15 72.4
MS.gene030653.t1 AT4G28890 45.070 71 38 1 111 181 97 166 1.93e-15 74.3
MS.gene030653.t1 AT5G66070 39.560 91 50 2 94 183 159 245 2.26e-15 72.8
MS.gene030653.t1 AT2G18650 44.048 84 44 1 104 184 89 172 2.33e-15 74.3
MS.gene030653.t1 AT2G34990 30.469 128 82 3 60 180 11 138 2.69e-15 73.2
MS.gene030653.t1 AT4G30400 41.558 77 45 0 104 180 100 176 2.91e-15 73.9
MS.gene030653.t1 AT3G48030 40.000 80 42 2 107 183 98 174 2.94e-15 72.8
MS.gene030653.t1 AT2G34990 30.469 128 82 3 60 180 33 160 3.08e-15 73.2
MS.gene030653.t1 AT3G62690 38.043 92 47 2 112 203 88 169 3.80e-15 72.4
MS.gene030653.t1 AT2G46494 27.083 192 117 6 2 180 177 358 4.56e-15 73.2
MS.gene030653.t1 AT3G48030 40.000 80 42 2 107 183 176 252 5.45e-15 72.8
MS.gene030653.t1 AT5G05810 47.222 72 37 1 109 180 118 188 8.05e-15 72.8
MS.gene030653.t1 AT4G10150 29.921 127 86 2 58 184 34 157 1.05e-14 70.9
MS.gene030653.t1 AT1G72220 29.630 135 69 4 65 180 92 219 1.17e-14 72.0
MS.gene030653.t1 AT1G28040 40.000 75 44 1 107 180 221 295 1.58e-14 71.2
MS.gene030653.t1 AT5G42200 40.541 74 43 1 107 180 74 146 1.90e-14 68.6
MS.gene030653.t1 AT5G53110 39.437 71 42 1 111 180 302 372 2.42e-14 71.2
MS.gene030653.t1 AT2G35910 33.708 89 58 1 111 199 121 208 2.63e-14 69.3
MS.gene030653.t1 AT4G33565 43.662 71 38 1 136 204 215 285 2.81e-14 70.9
MS.gene030653.t1 AT2G47560 41.096 73 42 1 109 180 78 150 4.01e-14 68.9
MS.gene030653.t1 AT5G43420 30.769 143 75 3 62 180 38 180 6.44e-14 70.1
MS.gene030653.t1 AT5G10380 41.250 80 44 2 106 184 104 181 1.07e-13 68.9
MS.gene030653.t1 AT3G19140 35.455 110 68 2 73 181 15 122 1.40e-13 65.9
MS.gene030653.t1 AT2G37580 39.744 78 42 1 103 180 112 184 1.92e-13 67.4
MS.gene030653.t1 AT4G17920 28.125 128 86 2 62 183 28 155 2.02e-13 67.8
MS.gene030653.t1 AT1G33480 35.135 74 46 1 111 184 75 146 2.04e-13 67.8
MS.gene030653.t1 AT2G25410 43.056 72 39 1 111 180 298 369 2.40e-13 68.2
MS.gene030653.t1 AT5G06490 32.353 102 53 2 111 206 96 187 4.58e-13 65.5
MS.gene030653.t1 AT5G40250 52.083 48 23 0 137 184 142 189 4.77e-13 67.4
MS.gene030653.t1 AT1G32361 34.615 104 59 4 84 183 101 199 5.29e-13 67.0
MS.gene030653.t1 AT2G46493 30.693 101 64 2 86 180 80 180 6.53e-13 65.1
MS.gene030653.t1 AT3G18930 47.059 51 27 0 137 187 155 205 7.08e-13 67.0
MS.gene030653.t1 AT3G18930 47.059 51 27 0 137 187 155 205 7.08e-13 67.0
MS.gene030653.t1 AT3G18930 47.059 51 27 0 137 187 155 205 7.08e-13 67.0
MS.gene030653.t1 AT5G58580 31.776 107 64 2 109 211 109 210 1.11e-12 65.9
MS.gene030653.t1 AT2G46160 30.097 103 59 2 111 206 104 200 2.12e-12 63.9
MS.gene030653.t1 AT2G46160 30.097 103 59 2 111 206 104 200 2.12e-12 63.9
MS.gene030653.t1 AT4G35840 38.961 77 45 1 109 183 160 236 2.51e-12 64.3
MS.gene030653.t1 AT2G35420 37.500 72 44 1 109 180 75 145 2.81e-12 64.3
MS.gene030653.t1 AT3G61550 40.278 72 37 1 135 206 133 198 2.90e-12 63.5
MS.gene030653.t1 AT2G17730 37.333 75 45 1 109 181 165 239 3.15e-12 63.9
MS.gene030653.t1 AT2G18670 37.333 75 47 0 106 180 78 152 3.35e-12 62.8
MS.gene030653.t1 AT5G36001 53.191 47 22 0 135 181 261 307 4.40e-12 64.3
MS.gene030653.t1 AT1G12760 36.957 92 52 2 95 186 244 329 6.10e-12 63.9
MS.gene030653.t1 AT3G61180 46.377 69 36 1 127 195 312 379 6.91e-12 63.9
MS.gene030653.t1 AT1G12760 39.535 86 46 2 101 186 321 400 7.23e-12 63.9
MS.gene030653.t1 AT4G26400 31.288 163 70 6 18 180 162 282 7.23e-12 63.9
MS.gene030653.t1 AT4G26400 31.288 163 70 6 18 180 162 282 7.23e-12 63.9
MS.gene030653.t1 AT2G46495 36.842 76 46 1 107 180 287 362 9.86e-12 63.5
MS.gene030653.t1 AT2G46495 36.842 76 46 1 107 180 259 334 1.19e-11 63.2
MS.gene030653.t1 AT4G24015 38.372 86 51 1 95 180 64 147 1.47e-11 61.2
MS.gene030653.t1 AT3G20395 35.135 74 45 1 110 183 146 216 1.50e-11 62.0
MS.gene030653.t1 AT1G35625 25.000 160 109 4 52 210 156 305 1.53e-11 62.8
MS.gene030653.t1 AT5G46650 24.528 159 105 3 40 183 2 160 2.10e-11 62.4
MS.gene030653.t1 AT5G20910 37.234 94 50 3 104 189 188 280 2.25e-11 62.4
MS.gene030653.t1 AT1G53010 35.354 99 52 4 99 186 81 178 3.30e-11 60.1

Find 37 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATCCTTATAATAATTTC+TGG 0.224435 4.3:-8623026 None:intergenic
TGAAAACCATGGTTGCATTT+AGG 0.231625 4.3:-8622882 None:intergenic
AATTCAACTGACTCGAATTT+CGG 0.321646 4.3:+8622558 MS.gene030653:CDS
CCTGCGACCCACCAATCTTC+TGG 0.323463 4.3:-8622980 None:intergenic
AACAAATAAAAGCACATAAT+AGG 0.334256 4.3:-8622623 None:intergenic
CAACAATGATTTACCTCAAT+TGG 0.338525 4.3:+8622719 MS.gene030653:CDS
CAGTGCCAGAAATTATTATA+AGG 0.354379 4.3:+8623021 MS.gene030653:CDS
CTAAGTGATTGTTGAACAAC+TGG 0.363841 4.3:-8622504 None:intergenic
CTTGAAACTTGCCAGAAGAT+TGG 0.367066 4.3:+8622969 MS.gene030653:CDS
ATTGTTGAACAACTGGATTT+TGG 0.369165 4.3:-8622497 None:intergenic
CCATCATAAGGTGTGCCTTA+AGG 0.403267 4.3:+8622661 MS.gene030653:CDS
TCTGGCACTGGCAAGACAAT+TGG 0.407241 4.3:-8623008 None:intergenic
CGGAGTTCGTGAATTTGATT+CGG 0.410866 4.3:+8622578 MS.gene030653:CDS
ATGTTCGTTGCGTTGACAAA+TGG 0.425384 4.3:+8622904 MS.gene030653:CDS
ATTCCTTTGTTGACCAATTG+AGG 0.425870 4.3:-8622732 None:intergenic
TTGCATTAAACTCCATCATA+AGG 0.439676 4.3:+8622649 MS.gene030653:CDS
ATTGTTGTTTGAAATCCTTA+AGG 0.455026 4.3:-8622676 None:intergenic
CTTATAATAATTTCTGGCAC+TGG 0.463572 4.3:-8623020 None:intergenic
AAGTTTAGATGCAGAATGTA+TGG 0.475139 4.3:+8622815 MS.gene030653:CDS
AGAAGGCATTGTCTACACTT+TGG 0.485230 4.3:-8622948 None:intergenic
TTGCGTTGACAAATGGCTAA+AGG 0.505267 4.3:+8622911 MS.gene030653:CDS
TTGTGGAATCTCACACAAGA+AGG 0.511006 4.3:+8622466 MS.gene030653:CDS
CCTTAAGGCACACCTTATGA+TGG 0.511412 4.3:-8622661 None:intergenic
CCAGAAGATTGGTGGGTCGC+AGG 0.513680 4.3:+8622980 MS.gene030653:CDS
GAAACTTGCCAGAAGATTGG+TGG 0.537375 4.3:+8622972 MS.gene030653:CDS
ACTTCTCCATGAGCTTCTTG+TGG 0.539026 4.3:+8622449 MS.gene030653:CDS
TCAGTTGAATGGATAACTAC+AGG 0.541493 4.3:-8622780 None:intergenic
ATACATTCTGCATCTAAACT+TGG 0.563675 4.3:-8622813 None:intergenic
TCTTCTGGCAAGTTTCAAGA+AGG 0.570889 4.3:-8622965 None:intergenic
ATGGAGAAGTGGTGAAGCAA+AGG 0.582322 4.3:-8622436 None:intergenic
GAGATTCCACAAGAAGCTCA+TGG 0.584576 4.3:-8622455 None:intergenic
TGTCTCTCAGAGTTCACAAA+GGG 0.599739 4.3:+8622840 MS.gene030653:CDS
TTACCTCAATTGGTCAACAA+AGG 0.600264 4.3:+8622729 MS.gene030653:CDS
ACAAGAAGCTCATGGAGAAG+TGG 0.600282 4.3:-8622447 None:intergenic
AAACTTGCCAGAAGATTGGT+GGG 0.608584 4.3:+8622973 MS.gene030653:CDS
CGCAACGAACATGAAAACCA+TGG 0.672850 4.3:-8622893 None:intergenic
ATGTCTCTCAGAGTTCACAA+AGG 0.688255 4.3:+8622839 MS.gene030653:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAAATAAAAGCACATAAT+AGG - chr4.3:8622626-8622645 None:intergenic 20.0%
! TGGATCCTTATAATAATTTC+TGG - chr4.3:8623029-8623048 None:intergenic 25.0%
!!! ATTGTTGTTTGAAATCCTTA+AGG - chr4.3:8622679-8622698 None:intergenic 25.0%
!!! TGTTTTTGTTTGTGAAAACA+GGG - chr4.3:8622539-8622558 None:intergenic 25.0%
!!! TTGTTTTTGTTTGTGAAAAC+AGG - chr4.3:8622540-8622559 None:intergenic 25.0%
AAGTTTAGATGCAGAATGTA+TGG + chr4.3:8622815-8622834 MS.gene030653:CDS 30.0%
ATACATTCTGCATCTAAACT+TGG - chr4.3:8622816-8622835 None:intergenic 30.0%
CAACAATGATTTACCTCAAT+TGG + chr4.3:8622719-8622738 MS.gene030653:CDS 30.0%
CAGTGCCAGAAATTATTATA+AGG + chr4.3:8623021-8623040 MS.gene030653:CDS 30.0%
TTGCATTAAACTCCATCATA+AGG + chr4.3:8622649-8622668 MS.gene030653:CDS 30.0%
! ATTGTTGAACAACTGGATTT+TGG - chr4.3:8622500-8622519 None:intergenic 30.0%
! ATTTTACCTAAATGCAACCA+TGG + chr4.3:8622876-8622895 MS.gene030653:CDS 30.0%
!! AATTCAACTGACTCGAATTT+CGG + chr4.3:8622558-8622577 MS.gene030653:CDS 30.0%
!! CTTATAATAATTTCTGGCAC+TGG - chr4.3:8623023-8623042 None:intergenic 30.0%
!! GTTTTTGTTTGTGAAAACAG+GGG - chr4.3:8622538-8622557 None:intergenic 30.0%
!!! GTAGTTTTAACTCAGTTGAA+TGG - chr4.3:8622794-8622813 None:intergenic 30.0%
ATTCCTTTGTTGACCAATTG+AGG - chr4.3:8622735-8622754 None:intergenic 35.0%
CTAAGTGATTGTTGAACAAC+TGG - chr4.3:8622507-8622526 None:intergenic 35.0%
TCAGTTGAATGGATAACTAC+AGG - chr4.3:8622783-8622802 None:intergenic 35.0%
TGAAAACCATGGTTGCATTT+AGG - chr4.3:8622885-8622904 None:intergenic 35.0%
TTACCTCAATTGGTCAACAA+AGG + chr4.3:8622729-8622748 MS.gene030653:CDS 35.0%
AAACTTGCCAGAAGATTGGT+GGG + chr4.3:8622973-8622992 MS.gene030653:CDS 40.0%
ATGTCTCTCAGAGTTCACAA+AGG + chr4.3:8622839-8622858 MS.gene030653:CDS 40.0%
CGGAGTTCGTGAATTTGATT+CGG + chr4.3:8622578-8622597 MS.gene030653:CDS 40.0%
CTTGAAACTTGCCAGAAGAT+TGG + chr4.3:8622969-8622988 MS.gene030653:CDS 40.0%
TCTTCTGGCAAGTTTCAAGA+AGG - chr4.3:8622968-8622987 None:intergenic 40.0%
TGTCTCTCAGAGTTCACAAA+GGG + chr4.3:8622840-8622859 MS.gene030653:CDS 40.0%
TTGTGGAATCTCACACAAGA+AGG + chr4.3:8622466-8622485 MS.gene030653:CDS 40.0%
! ATGTTCGTTGCGTTGACAAA+TGG + chr4.3:8622904-8622923 MS.gene030653:CDS 40.0%
! TTGCGTTGACAAATGGCTAA+AGG + chr4.3:8622911-8622930 MS.gene030653:CDS 40.0%
!! AGAAGGCATTGTCTACACTT+TGG - chr4.3:8622951-8622970 None:intergenic 40.0%
ACAAGAAGCTCATGGAGAAG+TGG - chr4.3:8622450-8622469 None:intergenic 45.0%
ACTTCTCCATGAGCTTCTTG+TGG + chr4.3:8622449-8622468 MS.gene030653:CDS 45.0%
ATGGAGAAGTGGTGAAGCAA+AGG - chr4.3:8622439-8622458 None:intergenic 45.0%
CCATCATAAGGTGTGCCTTA+AGG + chr4.3:8622661-8622680 MS.gene030653:CDS 45.0%
CCTTAAGGCACACCTTATGA+TGG - chr4.3:8622664-8622683 None:intergenic 45.0%
CGCAACGAACATGAAAACCA+TGG - chr4.3:8622896-8622915 None:intergenic 45.0%
GAAACTTGCCAGAAGATTGG+TGG + chr4.3:8622972-8622991 MS.gene030653:CDS 45.0%
GAGATTCCACAAGAAGCTCA+TGG - chr4.3:8622458-8622477 None:intergenic 45.0%
!! TCTGGCACTGGCAAGACAAT+TGG - chr4.3:8623011-8623030 None:intergenic 50.0%
CCTGCGACCCACCAATCTTC+TGG - chr4.3:8622983-8623002 None:intergenic 60.0%
! CCAGAAGATTGGTGGGTCGC+AGG + chr4.3:8622980-8622999 MS.gene030653:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 8622420 8623055 8622420 ID=MS.gene030653
chr4.3 mRNA 8622420 8623055 8622420 ID=MS.gene030653.t1;Parent=MS.gene030653
chr4.3 exon 8622420 8623055 8622420 ID=MS.gene030653.t1.exon1;Parent=MS.gene030653.t1
chr4.3 CDS 8622420 8623055 8622420 ID=cds.MS.gene030653.t1;Parent=MS.gene030653.t1
Gene Sequence

>MS.gene030653

ATGTATGCTTCTACTTCCTTTGCTTCACCACTTCTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAAAATCCAGTTGTTCAACAATCACTTAGAATCAACTCCCCTGTTTTCACAAACAAAAACAATTCAACTGACTCGAATTTCGGAGTTCGTGAATTTGATTCGGATGTTGTGATGATAATTGCAGTCCTATTATGTGCTTTTATTTGTTTACTTGCATTAAACTCCATCATAAGGTGTGCCTTAAGGATTTCAAACAACAATGAATCTTCTTCGAGTTCAAGCAACAATGATTTACCTCAATTGGTCAACAAAGGAATAAAGAAGAAAGCTCTCAAGAAATTTCCTGTAGTTATCCATTCAACTGAGTTAAAACTACCAAGTTTAGATGCAGAATGTATGGTATGTCTCTCAGAGTTCACAAAGGGTGAAAAATTGCGCATTTTACCTAAATGCAACCATGGTTTTCATGTTCGTTGCGTTGACAAATGGCTAAAGGAACACTCATCATGTCCAAAGTGTAGACAATGCCTTCTTGAAACTTGCCAGAAGATTGGTGGGTCGCAGGTGCAACCAATTGTCTTGCCAGTGCCAGAAATTATTATAAGGATCCAAATGTAA
Protein sequence

>MS.gene030653.t1

MYASTSFASPLLHELLVESHTRRLLFQNPVVQQSLRINSPVFTNKNNSTDSNFGVREFDSDVVMIIAVLLCAFICLLALNSIIRCALRISNNNESSSSSSNNDLPQLVNKGIKKKALKKFPVVIHSTELKLPSLDAECMVCLSEFTKGEKLRILPKCNHGFHVRCVDKWLKEHSSCPKCRQCLLETCQKIGGSQVQPIVLPVPEIIIRIQM