AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70254

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70254.t1 MTR_8g092840 91.228 228 17 1 1 225 1 228 4.14e-147 409
MS.gene70254.t1 MTR_8g092960 89.778 225 16 1 1 225 1 218 4.70e-140 391
MS.gene70254.t1 MTR_8g092970 78.829 222 41 1 1 222 1 216 5.78e-119 337
MS.gene70254.t1 MTR_8g093010 76.652 227 39 5 1 222 1 218 2.14e-118 336
MS.gene70254.t1 MTR_8g092930 76.889 225 48 2 1 222 1 224 1.22e-115 329
MS.gene70254.t1 MTR_8g092985 79.048 210 43 1 1 209 1 210 1.02e-111 319
MS.gene70254.t1 MTR_8g092990 76.549 226 49 2 1 222 1 226 1.95e-107 309
MS.gene70254.t1 MTR_3g095560 60.526 228 82 4 1 222 1 226 3.36e-92 270
MS.gene70254.t1 MTR_3g094000 52.632 133 60 2 53 184 36 166 8.10e-42 140
MS.gene70254.t1 MTR_7g073200 45.455 143 73 3 42 183 15 153 3.87e-40 136
MS.gene70254.t1 MTR_5g024730 48.905 137 63 4 54 188 26 157 9.61e-37 128
MS.gene70254.t1 MTR_3g116000 45.775 142 71 4 58 197 26 163 1.11e-34 122
MS.gene70254.t1 MTR_8g073120 48.062 129 57 4 54 179 19 140 2.05e-33 119
MS.gene70254.t1 MTR_2g035800 38.411 151 84 3 30 180 4 145 2.78e-31 112
MS.gene70254.t1 MTR_4g094725 38.926 149 80 3 33 180 11 149 9.96e-30 108
MS.gene70254.t1 MTR_1g100737 45.833 96 48 1 95 186 77 172 2.91e-20 85.1
MS.gene70254.t1 MTR_8g023400 48.101 79 38 2 110 187 92 168 5.36e-20 87.0
MS.gene70254.t1 MTR_6g055030 39.655 116 64 2 66 179 57 168 7.50e-20 86.3
MS.gene70254.t1 MTR_1g082550 34.000 150 83 4 42 183 32 173 1.55e-19 86.3
MS.gene70254.t1 MTR_3g110190 47.436 78 40 1 108 185 64 140 2.84e-19 85.1
MS.gene70254.t1 MTR_7g113800 35.333 150 76 8 44 183 28 166 7.43e-19 84.3
MS.gene70254.t1 MTR_4g120270 44.444 72 37 1 108 179 78 146 1.97e-18 81.6
MS.gene70254.t1 MTR_7g117540 57.895 57 24 0 129 185 93 149 5.45e-18 80.9
MS.gene70254.t1 MTR_4g063070 44.444 81 44 1 100 179 298 378 6.72e-18 81.6
MS.gene70254.t1 MTR_1g043410 25.974 154 94 3 39 180 21 166 9.39e-18 80.5
MS.gene70254.t1 MTR_3g071300 31.538 130 86 1 56 182 22 151 2.38e-17 77.0
MS.gene70254.t1 MTR_7g116220 41.026 78 44 1 109 184 69 146 2.62e-17 77.0
MS.gene70254.t1 MTR_1g492830 29.747 158 95 3 61 218 22 163 2.94e-17 77.8
MS.gene70254.t1 MTR_6g087150 32.468 154 91 3 30 180 19 162 3.21e-17 79.7
MS.gene70254.t1 MTR_5g082940 44.318 88 46 2 96 182 63 148 3.38e-17 76.3
MS.gene70254.t1 MTR_3g099650 42.308 78 43 1 108 183 105 182 7.26e-17 78.6
MS.gene70254.t1 MTR_5g071930 50.000 76 34 2 109 184 65 136 1.08e-16 75.5
MS.gene70254.t1 MTR_3g078450 33.588 131 80 3 91 220 57 181 1.16e-16 76.3
MS.gene70254.t1 MTR_5g064980 37.374 99 57 2 86 182 87 182 1.33e-16 78.2
MS.gene70254.t1 MTR_2g096350 58.333 48 20 0 132 179 130 177 2.00e-16 75.5
MS.gene70254.t1 MTR_3g464780 43.590 78 41 1 109 183 101 178 2.09e-16 76.3
MS.gene70254.t1 MTR_4g129420 43.038 79 45 0 105 183 112 190 2.41e-16 77.8
MS.gene70254.t1 MTR_3g078470 31.452 124 83 2 61 182 26 149 3.85e-16 74.7
MS.gene70254.t1 MTR_2g055790 36.697 109 62 2 78 183 42 146 6.20e-16 73.6
MS.gene70254.t1 MTR_4g056590 39.744 78 42 2 109 186 99 171 7.96e-16 73.2
MS.gene70254.t1 MTR_7g076250 40.278 72 43 0 108 179 61 132 8.81e-16 73.2
MS.gene70254.t1 MTR_2g436100 38.750 80 48 1 100 179 83 161 9.53e-16 74.7
MS.gene70254.t1 MTR_4g030070 35.227 88 55 1 100 187 75 160 1.02e-15 73.6
MS.gene70254.t1 MTR_5g026730 29.771 131 88 2 53 179 6 136 1.39e-15 72.0
MS.gene70254.t1 MTR_8g066780 36.283 113 63 3 105 216 109 213 3.42e-15 73.9
MS.gene70254.t1 MTR_4g093830 42.857 70 39 1 110 179 126 194 3.88e-15 73.6
MS.gene70254.t1 MTR_3g100400 41.667 72 41 1 108 179 128 198 5.50e-15 73.6
MS.gene70254.t1 MTR_5g030010 37.975 79 48 1 105 183 117 194 6.54e-15 73.2
MS.gene70254.t1 MTR_7g116180 38.462 78 46 1 107 182 64 141 6.74e-15 70.5
MS.gene70254.t1 MTR_1g070425 38.462 78 46 1 107 182 65 142 9.66e-15 70.1
MS.gene70254.t1 MTR_8g089880 36.250 80 50 1 110 189 127 205 9.77e-15 71.6
MS.gene70254.t1 MTR_1g070140 38.462 78 46 2 103 179 96 172 1.05e-14 72.4
MS.gene70254.t1 MTR_3g012550 27.692 130 92 2 52 179 21 150 1.22e-14 69.7
MS.gene70254.t1 MTR_7g108855 35.185 108 60 3 97 195 53 159 1.61e-14 69.7
MS.gene70254.t1 MTR_5g092790 42.683 82 44 2 100 179 147 227 1.74e-14 70.5
MS.gene70254.t1 MTR_3g114500 30.769 117 77 2 63 179 1 113 1.78e-14 68.2
MS.gene70254.t1 MTR_3g091620 43.243 74 41 1 110 183 101 173 2.18e-14 71.6
MS.gene70254.t1 MTR_5g064890 37.179 78 48 1 106 183 124 200 2.38e-14 71.2
MS.gene70254.t1 MTR_5g066250 40.278 72 42 1 108 179 132 202 2.46e-14 71.6
MS.gene70254.t1 MTR_2g090905 42.857 77 39 1 108 179 37 113 2.76e-14 67.4
MS.gene70254.t1 MTR_3g086700 32.203 118 73 2 72 182 3 120 3.07e-14 68.9
MS.gene70254.t1 MTR_2g009310 57.778 45 19 0 135 179 159 203 3.34e-14 71.2
MS.gene70254.t1 MTR_2g090950 41.026 78 41 1 107 179 88 165 3.59e-14 69.7
MS.gene70254.t1 MTR_1g074190 33.333 90 55 1 103 187 92 181 4.05e-14 70.5
MS.gene70254.t1 MTR_5g026720 55.556 45 20 0 135 179 91 135 4.10e-14 67.8
MS.gene70254.t1 MTR_2g041200 34.884 129 63 3 61 179 34 151 4.47e-14 68.2
MS.gene70254.t1 MTR_8g074900 33.333 123 68 2 69 182 108 225 4.61e-14 68.9
MS.gene70254.t1 MTR_5g064990 38.462 78 46 1 108 183 112 189 5.17e-14 70.5
MS.gene70254.t1 MTR_1g056350 37.662 77 44 2 106 179 70 145 5.68e-14 67.8
MS.gene70254.t1 MTR_6g007737 31.111 135 79 3 61 182 71 204 7.07e-14 70.1
MS.gene70254.t1 MTR_5g034790 40.260 77 45 1 106 182 112 187 7.36e-14 70.1
MS.gene70254.t1 MTR_6g007670 41.096 73 41 1 107 179 5 75 8.21e-14 68.9
MS.gene70254.t1 MTR_6g007670 42.254 71 41 0 109 179 144 214 1.69e-11 62.4
MS.gene70254.t1 MTR_4g106680 39.189 74 44 1 106 179 102 174 9.26e-14 69.3
MS.gene70254.t1 MTR_5g076990 30.882 136 84 3 54 179 13 148 1.08e-13 69.3
MS.gene70254.t1 MTR_5g022920 38.961 77 46 1 107 182 158 234 1.08e-13 68.2
MS.gene70254.t1 MTR_3g086730 32.203 118 73 2 72 182 3 120 1.15e-13 68.2
MS.gene70254.t1 MTR_4g108830 32.979 94 61 1 87 180 126 217 1.21e-13 67.8
MS.gene70254.t1 MTR_5g009210 38.272 81 49 1 100 179 277 357 1.24e-13 69.3
MS.gene70254.t1 MTR_4g108830 32.979 94 61 1 87 180 98 189 1.25e-13 67.4
MS.gene70254.t1 MTR_5g009190 37.805 82 50 1 100 180 256 337 1.30e-13 69.3
MS.gene70254.t1 MTR_8g063660 39.241 79 47 1 106 184 64 141 1.68e-13 68.9
MS.gene70254.t1 MTR_7g059360 43.478 69 38 1 113 180 133 201 1.80e-13 67.8
MS.gene70254.t1 MTR_1g026070 29.060 117 79 1 63 179 1 113 1.84e-13 65.5
MS.gene70254.t1 MTR_5g092750 42.683 82 44 2 100 179 147 227 2.47e-13 67.4
MS.gene70254.t1 MTR_8g099495 37.179 78 48 1 104 180 313 390 3.91e-13 68.2
MS.gene70254.t1 MTR_8g028465 36.620 71 42 1 110 180 90 157 4.32e-13 66.2
MS.gene70254.t1 MTR_3g091200 27.485 171 103 5 18 179 215 373 4.35e-13 67.8
MS.gene70254.t1 MTR_8g071815 58.140 43 18 0 137 179 90 132 4.55e-13 65.5
MS.gene70254.t1 MTR_6g007680 39.726 73 43 1 107 179 37 108 4.80e-13 65.1
MS.gene70254.t1 MTR_7g079290 42.623 61 35 0 134 194 152 212 6.09e-13 65.9
MS.gene70254.t1 MTR_3g078120 27.132 129 80 2 63 179 1 127 8.90e-13 63.9
MS.gene70254.t1 MTR_5g009200 37.037 81 50 1 100 179 312 392 1.28e-12 66.6
MS.gene70254.t1 MTR_7g116200 39.726 73 42 1 107 179 65 135 1.76e-12 63.9
MS.gene70254.t1 MTR_4g022410 34.951 103 62 2 93 195 74 171 2.00e-12 63.9
MS.gene70254.t1 MTR_6g055030 58.537 41 17 0 139 179 97 137 5.31e-12 64.3
MS.gene70254.t1 MTR_8g019710 57.778 45 19 0 135 179 52 96 5.34e-12 61.6
MS.gene70254.t1 MTR_8g032690 46.154 52 28 0 137 188 19 70 5.37e-12 60.8
MS.gene70254.t1 MTR_3g087900 46.154 65 30 3 120 183 55 115 6.20e-12 62.0
MS.gene70254.t1 MTR_8g066740 29.688 128 80 3 62 179 21 148 6.24e-12 63.9
MS.gene70254.t1 MTR_3g081030 33.333 96 60 2 100 195 86 177 7.57e-12 62.8
MS.gene70254.t1 MTR_2g079320 35.484 93 55 2 95 182 112 204 9.39e-12 62.4
MS.gene70254.t1 MTR_7g079280 33.766 77 50 1 110 185 80 156 1.58e-11 61.2
MS.gene70254.t1 MTR_7g116210 38.356 73 43 1 107 179 7 77 2.46e-11 59.3
MS.gene70254.t1 MTR_1g096780 35.106 94 53 3 110 202 208 294 2.78e-11 62.8
MS.gene70254.t1 MTR_8g099515 39.437 71 42 1 110 179 309 379 2.81e-11 62.8
MS.gene70254.t1 MTR_7g096690 24.615 130 86 4 61 179 14 142 3.41e-11 62.0
MS.gene70254.t1 MTR_8g027980 36.000 75 46 1 113 185 93 167 3.99e-11 61.6
MS.gene70254.t1 MTR_8g009190 51.020 49 24 0 135 183 103 151 4.52e-11 61.6
MS.gene70254.t1 MTR_8g027745 35.211 71 45 1 110 179 286 356 5.52e-11 61.6
MS.gene70254.t1 MTR_7g117350 26.016 123 83 2 63 180 246 365 6.83e-11 61.2
MS.gene70254.t1 MTR_7g117350 26.016 123 83 2 63 180 238 357 7.45e-11 61.2
MS.gene70254.t1 MTR_2g044570 39.655 58 35 0 133 190 79 136 8.24e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70254.t1 AT1G49230 47.418 213 90 5 11 216 17 214 7.85e-62 192
MS.gene70254.t1 AT1G49210 46.009 213 96 4 21 224 23 225 1.71e-59 187
MS.gene70254.t1 AT1G49220 50.000 180 70 4 21 192 23 190 7.87e-59 186
MS.gene70254.t1 AT1G49200 45.070 213 98 4 21 224 24 226 1.09e-58 185
MS.gene70254.t1 AT3G18773 44.737 228 102 8 6 224 8 220 2.63e-55 176
MS.gene70254.t1 AT5G05280 52.273 132 51 3 57 184 37 160 3.50e-42 141
MS.gene70254.t1 AT3G10910 49.324 148 60 4 57 198 29 167 7.28e-42 140
MS.gene70254.t1 AT1G76410 44.828 145 80 0 41 185 8 152 1.91e-38 132
MS.gene70254.t1 AT1G20823 42.169 166 80 4 23 183 3 157 2.61e-37 129
MS.gene70254.t1 AT2G17450 44.275 131 59 2 58 182 25 147 2.75e-31 113
MS.gene70254.t1 AT5G01880 40.761 184 82 6 12 193 1 159 9.36e-31 111
MS.gene70254.t1 AT5G47610 33.758 157 95 2 23 179 2 149 1.31e-27 103
MS.gene70254.t1 AT4G35480 39.286 140 68 3 58 183 23 159 1.49e-27 104
MS.gene70254.t1 AT4G17245 36.923 130 70 3 51 179 27 145 1.22e-24 95.9
MS.gene70254.t1 AT4G09120 36.364 121 72 2 64 182 51 168 4.66e-20 87.4
MS.gene70254.t1 AT4G09110 36.364 121 72 2 64 182 51 168 1.04e-19 85.9
MS.gene70254.t1 AT1G23980 34.682 173 88 6 34 183 20 190 4.01e-19 85.1
MS.gene70254.t1 AT1G72310 48.718 78 38 1 106 183 98 173 5.27e-19 84.3
MS.gene70254.t1 AT1G53820 48.101 79 35 3 106 182 91 165 6.30e-19 84.0
MS.gene70254.t1 AT2G27940 39.604 101 58 2 96 196 101 198 1.37e-18 81.6
MS.gene70254.t1 AT1G72200 31.410 156 84 5 61 209 62 201 2.34e-18 83.2
MS.gene70254.t1 AT3G05200 29.609 179 106 3 48 206 36 214 5.10e-18 82.0
MS.gene70254.t1 AT3G14320 34.167 120 76 2 62 180 14 131 6.79e-18 79.0
MS.gene70254.t1 AT4G40070 33.108 148 91 4 64 206 49 193 7.00e-18 81.3
MS.gene70254.t1 AT1G22500 32.192 146 96 2 53 195 31 176 9.78e-18 81.3
MS.gene70254.t1 AT1G74410 39.130 92 55 1 91 182 131 221 3.03e-17 77.8
MS.gene70254.t1 AT3G16720 38.542 96 56 2 99 194 83 175 4.19e-17 78.6
MS.gene70254.t1 AT1G35330 32.558 129 76 2 65 182 46 174 7.44e-17 78.2
MS.gene70254.t1 AT2G25410 36.667 120 69 3 64 179 253 369 1.39e-16 77.8
MS.gene70254.t1 AT5G57750 40.000 75 45 0 106 180 91 165 1.85e-16 75.5
MS.gene70254.t1 AT2G18650 43.590 78 44 0 106 183 95 172 1.94e-16 77.8
MS.gene70254.t1 AT2G20030 47.143 70 36 1 110 179 98 166 2.29e-16 77.4
MS.gene70254.t1 AT2G35000 32.576 132 78 3 62 183 51 181 2.44e-16 77.4
MS.gene70254.t1 AT4G15975 36.082 97 60 1 86 182 27 121 2.89e-16 75.5
MS.gene70254.t1 AT4G30400 41.333 75 44 0 105 179 102 176 3.58e-16 77.0
MS.gene70254.t1 AT4G10160 32.143 140 85 4 50 183 8 143 4.15e-16 74.7
MS.gene70254.t1 AT5G27420 38.384 99 53 3 93 184 74 171 5.40e-16 76.3
MS.gene70254.t1 AT1G04360 29.771 131 79 3 62 179 46 176 6.59e-16 75.9
MS.gene70254.t1 AT3G03550 59.184 49 20 0 135 183 157 205 6.83e-16 75.9
MS.gene70254.t1 AT4G17905 50.000 66 31 1 114 179 134 197 8.81e-16 75.1
MS.gene70254.t1 AT5G17600 43.056 72 40 1 108 179 114 184 9.38e-16 75.5
MS.gene70254.t1 AT4G17905 47.436 78 37 2 102 179 150 223 9.80e-16 75.1
MS.gene70254.t1 AT1G33480 33.663 101 64 2 110 210 75 172 1.51e-15 73.9
MS.gene70254.t1 AT2G46493 41.333 75 43 1 106 179 106 180 1.56e-15 72.4
MS.gene70254.t1 AT4G28890 43.662 71 39 1 110 180 97 166 1.70e-15 75.1
MS.gene70254.t1 AT5G66070 45.333 75 38 2 108 182 150 221 4.69e-15 71.6
MS.gene70254.t1 AT5G66070 45.333 75 38 2 108 182 150 221 4.69e-15 71.6
MS.gene70254.t1 AT1G28040 41.333 75 43 1 106 179 221 295 4.84e-15 72.8
MS.gene70254.t1 AT3G48030 39.130 92 44 3 100 182 86 174 4.96e-15 72.4
MS.gene70254.t1 AT2G46494 28.467 137 89 2 52 179 222 358 5.09e-15 73.6
MS.gene70254.t1 AT4G09100 36.585 82 50 2 100 179 46 127 5.37e-15 69.7
MS.gene70254.t1 AT4G09130 43.421 76 41 1 109 182 90 165 7.17e-15 72.8
MS.gene70254.t1 AT3G18930 37.069 116 56 5 110 214 120 229 7.67e-15 73.2
MS.gene70254.t1 AT3G18930 37.069 116 56 5 110 214 120 229 7.67e-15 73.2
MS.gene70254.t1 AT3G18930 37.069 116 56 5 110 214 120 229 7.67e-15 73.2
MS.gene70254.t1 AT5G66070 45.333 75 38 2 108 182 174 245 8.13e-15 71.6
MS.gene70254.t1 AT3G48030 39.130 92 44 3 100 182 164 252 8.27e-15 72.8
MS.gene70254.t1 AT4G10150 36.905 84 51 1 100 183 76 157 8.89e-15 71.2
MS.gene70254.t1 AT5G06490 40.789 76 39 1 110 179 96 171 1.11e-14 70.5
MS.gene70254.t1 AT5G42200 39.189 74 44 1 106 179 74 146 1.16e-14 69.3
MS.gene70254.t1 AT2G35910 40.789 76 44 1 110 185 121 195 1.17e-14 70.5
MS.gene70254.t1 AT5G05810 41.667 72 41 1 108 179 118 188 1.51e-14 72.4
MS.gene70254.t1 AT5G07040 30.328 122 80 3 63 180 17 137 2.26e-14 68.6
MS.gene70254.t1 AT5G10380 38.750 80 46 2 105 183 104 181 3.51e-14 70.5
MS.gene70254.t1 AT1G72220 41.429 70 40 1 110 179 151 219 3.87e-14 71.2
MS.gene70254.t1 AT4G17920 29.545 132 83 3 61 182 24 155 4.48e-14 70.1
MS.gene70254.t1 AT2G34990 29.032 124 82 2 62 179 15 138 5.62e-14 70.1
MS.gene70254.t1 AT2G34990 29.032 124 82 2 62 179 37 160 5.90e-14 70.1
MS.gene70254.t1 AT3G62690 48.438 64 32 1 116 179 93 155 8.40e-14 68.9
MS.gene70254.t1 AT5G43420 26.573 143 81 3 61 179 38 180 1.01e-13 69.7
MS.gene70254.t1 AT3G11110 28.667 150 96 2 34 179 7 149 1.33e-13 66.6
MS.gene70254.t1 AT4G35840 29.936 157 85 4 48 182 83 236 1.58e-13 67.8
MS.gene70254.t1 AT5G58580 35.354 99 62 1 85 183 88 184 1.83e-13 68.6
MS.gene70254.t1 AT4G33565 50.980 51 25 0 135 185 215 265 2.15e-13 68.6
MS.gene70254.t1 AT1G32361 32.759 116 75 2 108 223 128 240 2.19e-13 68.6
MS.gene70254.t1 AT2G35420 28.682 129 82 2 60 179 18 145 2.31e-13 67.8
MS.gene70254.t1 AT5G53110 39.437 71 42 1 110 179 302 372 2.50e-13 68.6
MS.gene70254.t1 AT2G47560 30.496 141 87 4 44 179 16 150 4.37e-13 66.6
MS.gene70254.t1 AT1G35630 39.796 98 57 2 113 209 209 305 9.33e-13 66.6
MS.gene70254.t1 AT2G17730 59.091 44 18 0 137 180 196 239 9.41e-13 65.9
MS.gene70254.t1 AT5G40250 27.517 149 78 3 61 183 45 189 1.03e-12 66.6
MS.gene70254.t1 AT3G19140 35.294 102 63 2 80 180 23 122 1.04e-12 63.5
MS.gene70254.t1 AT4G26400 45.588 68 29 2 112 179 223 282 1.81e-12 65.9
MS.gene70254.t1 AT4G26400 45.588 68 29 2 112 179 223 282 1.81e-12 65.9
MS.gene70254.t1 AT2G46160 33.735 83 48 1 110 185 104 186 2.06e-12 64.3
MS.gene70254.t1 AT2G46160 33.735 83 48 1 110 185 104 186 2.06e-12 64.3
MS.gene70254.t1 AT2G18670 33.333 75 50 0 105 179 78 152 2.30e-12 63.5
MS.gene70254.t1 AT2G46495 38.158 76 45 1 106 179 287 362 3.34e-12 65.5
MS.gene70254.t1 AT2G46495 38.158 76 45 1 106 179 259 334 3.59e-12 65.1
MS.gene70254.t1 AT5G56340 45.588 68 29 2 112 179 241 300 6.25e-12 64.7
MS.gene70254.t1 AT5G36001 57.447 47 20 0 134 180 261 307 6.31e-12 64.3
MS.gene70254.t1 AT2G34000 26.190 126 89 2 59 180 9 134 7.01e-12 61.6
MS.gene70254.t1 AT2G42360 34.667 75 49 0 105 179 76 150 7.23e-12 63.2
MS.gene70254.t1 AT3G20395 37.363 91 53 2 93 182 129 216 1.24e-11 62.4
MS.gene70254.t1 AT1G53010 50.000 50 25 0 136 185 129 178 1.69e-11 61.2
MS.gene70254.t1 AT5G46650 26.380 163 101 5 35 182 2 160 2.81e-11 62.0
MS.gene70254.t1 AT2G42350 36.000 75 46 1 105 179 70 142 3.05e-11 61.2
MS.gene70254.t1 AT3G61550 29.032 93 56 1 103 185 92 184 5.15e-11 60.5
MS.gene70254.t1 AT3G47990 55.556 45 19 1 135 179 176 219 7.52e-11 60.8
MS.gene70254.t1 AT3G47990 55.556 45 19 1 135 179 176 219 7.52e-11 60.8
MS.gene70254.t1 AT3G47990 55.556 45 19 1 135 179 176 219 7.52e-11 60.8
MS.gene70254.t1 AT3G47990 55.556 45 19 1 135 179 233 276 7.58e-11 61.2
MS.gene70254.t1 AT3G47990 55.556 45 19 1 135 179 217 260 8.10e-11 61.2
MS.gene70254.t1 AT4G11360 38.889 90 50 3 97 183 46 133 8.85e-11 58.9

Find 48 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCAACTAACTCGTATTT+TGG 0.157335 4.1:+8771063 MS.gene70254:CDS
ATTGATAATCAATTGGATTT+TGG 0.213343 4.1:-8771005 None:intergenic
TTTCTTCTTGATTCCTTTGT+TGG 0.230023 4.1:-8771247 None:intergenic
CAGTGCCGGAATCTATTATT+AGG 0.242669 4.1:+8771526 MS.gene70254:CDS
GTTGATGATGGCTACGTTTA+GGG 0.291505 4.1:-8771181 None:intergenic
CGTTGATGATGGCTACGTTT+AGG 0.307492 4.1:-8771182 None:intergenic
TGAGTTGAAACTACCAAGTT+TGG 0.317109 4.1:+8771305 MS.gene70254:CDS
TGGAAACCATGATTGCATTT+AGG 0.379959 4.1:-8771387 None:intergenic
GAGACTTGTCGAAAGATTGT+TGG 0.388982 4.1:+8771477 MS.gene70254:CDS
CAGCAACTCTTCACCTCAAT+TGG 0.392775 4.1:+8771224 MS.gene70254:CDS
GGAGGCACTGTCTGCACTTA+GGG 0.406481 4.1:-8771452 None:intergenic
TTGCATTAAACTCCATTGTA+AGG 0.407407 4.1:+8771154 MS.gene70254:CDS
AGTTACATTCAAAAGCTTCA+TGG 0.410074 4.1:-8771563 None:intergenic
GTTGGTGATTGATAATCAAT+TGG 0.420758 4.1:-8771012 None:intergenic
TTGTGGTTGTGTGTGAGAAC+AGG 0.421574 4.1:-8771042 None:intergenic
GCCTCCTATGTTGCCAGTGC+CGG 0.430012 4.1:+8771512 MS.gene70254:CDS
AGCAAATAATAGCACACAAT+AGG 0.430929 4.1:-8771128 None:intergenic
ATGTTCGTTGCATCGACAAA+TGG 0.447158 4.1:+8771409 MS.gene70254:CDS
AGGAGGCACTGTCTGCACTT+AGG 0.469581 4.1:-8771453 None:intergenic
CTAATAATAGATTCCGGCAC+TGG 0.476860 4.1:-8771525 None:intergenic
AGATTTCACAAAGGGTGAAA+AGG 0.489010 4.1:+8771353 MS.gene70254:CDS
GTGTGTGAGAACAGGGGAGC+TGG 0.495001 4.1:-8771034 None:intergenic
ATTCCTTTGTTGGCCAATTG+AGG 0.496903 4.1:-8771237 None:intergenic
TGAATCCTAATAATAGATTC+CGG 0.497786 4.1:-8771531 None:intergenic
ATACACTCTGCATCCAAACT+TGG 0.507255 4.1:-8771318 None:intergenic
GATTCCGGCACTGGCAACAT+AGG 0.508387 4.1:-8771516 None:intergenic
TTGTGGAATCTCACACAAGA+AGG 0.511006 4.1:+8770974 MS.gene70254:CDS
CGAAGAAGAGTCGTTGATGA+TGG 0.512398 4.1:-8771193 None:intergenic
AATACGAGTTAGTTGAATTG+TGG 0.518921 4.1:-8771059 None:intergenic
TGTCTCTCAGATTTCACAAA+GGG 0.531207 4.1:+8771345 MS.gene70254:CDS
ACTTCTCCATGAGCTTCTTG+TGG 0.539026 4.1:+8770957 MS.gene70254:CDS
TGTGGTTGTGTGTGAGAACA+GGG 0.540709 4.1:-8771041 None:intergenic
ATTTGTCGATGCAACGAACA+TGG 0.562919 4.1:-8771407 None:intergenic
GGCACTGGCAACATAGGAGG+CGG 0.574365 4.1:-8771510 None:intergenic
GAGATTCCACAAGAAGCTCA+TGG 0.584576 4.1:-8770963 None:intergenic
TCACCTCAATTGGCCAACAA+AGG 0.584640 4.1:+8771234 MS.gene70254:CDS
TCCGGCACTGGCAACATAGG+AGG 0.592143 4.1:-8771513 None:intergenic
CAATCTTTCGACAAGTCTCA+AGG 0.597223 4.1:-8771473 None:intergenic
TCAAAAGCTTCATGGTCTAG+TGG 0.599238 4.1:-8771555 None:intergenic
ACAAGAAGCTCATGGAGAAG+TGG 0.600282 4.1:-8770955 None:intergenic
GTTTAGGGCACACCTTACAA+TGG 0.614051 4.1:-8771166 None:intergenic
GTGAGAACAGGGGAGCTGGT+TGG 0.655380 4.1:-8771030 None:intergenic
AGCTCTCAAGACATTTCCCA+CGG 0.658312 4.1:+8771269 MS.gene70254:CDS
TCAGTTGAGTAGTTCACCGT+GGG 0.659654 4.1:-8771285 None:intergenic
ATGTCTCTCAGATTTCACAA+AGG 0.686490 4.1:+8771344 MS.gene70254:CDS
CTCAGTTGAGTAGTTCACCG+TGG 0.697094 4.1:-8771286 None:intergenic
GTGGTTGTGTGTGAGAACAG+GGG 0.771294 4.1:-8771040 None:intergenic
TCTTTCGACAAGTCTCAAGG+AGG 0.776052 4.1:-8771470 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATAATCAATTGGATTT+TGG - chr4.1:8771008-8771027 None:intergenic 20.0%
! TGAATCCTAATAATAGATTC+CGG - chr4.1:8771534-8771553 None:intergenic 25.0%
!! AAGCTTTTGAATGTAACTAT+AGG + chr4.1:8771568-8771587 MS.gene70254:CDS 25.0%
!! AATTCAACTAACTCGTATTT+TGG + chr4.1:8771063-8771082 MS.gene70254:CDS 25.0%
!! AGCTTTTGAATGTAACTATA+GGG + chr4.1:8771569-8771588 MS.gene70254:CDS 25.0%
AATACGAGTTAGTTGAATTG+TGG - chr4.1:8771062-8771081 None:intergenic 30.0%
AGCAAATAATAGCACACAAT+AGG - chr4.1:8771131-8771150 None:intergenic 30.0%
AGTTACATTCAAAAGCTTCA+TGG - chr4.1:8771566-8771585 None:intergenic 30.0%
TTGCATTAAACTCCATTGTA+AGG + chr4.1:8771154-8771173 MS.gene70254:CDS 30.0%
TTTCTTCTTGATTCCTTTGT+TGG - chr4.1:8771250-8771269 None:intergenic 30.0%
! ATTTTGCCTAAATGCAATCA+TGG + chr4.1:8771381-8771400 MS.gene70254:CDS 30.0%
!! GTTGGTGATTGATAATCAAT+TGG - chr4.1:8771015-8771034 None:intergenic 30.0%
AGATTTCACAAAGGGTGAAA+AGG + chr4.1:8771353-8771372 MS.gene70254:CDS 35.0%
ATGTCTCTCAGATTTCACAA+AGG + chr4.1:8771344-8771363 MS.gene70254:CDS 35.0%
TGGAAACCATGATTGCATTT+AGG - chr4.1:8771390-8771409 None:intergenic 35.0%
TGTCTCTCAGATTTCACAAA+GGG + chr4.1:8771345-8771364 MS.gene70254:CDS 35.0%
! TGAGTTGAAACTACCAAGTT+TGG + chr4.1:8771305-8771324 MS.gene70254:CDS 35.0%
ATACACTCTGCATCCAAACT+TGG - chr4.1:8771321-8771340 None:intergenic 40.0%
ATTCCTTTGTTGGCCAATTG+AGG - chr4.1:8771240-8771259 None:intergenic 40.0%
ATTTGTCGATGCAACGAACA+TGG - chr4.1:8771410-8771429 None:intergenic 40.0%
CAATCTTTCGACAAGTCTCA+AGG - chr4.1:8771476-8771495 None:intergenic 40.0%
CTAATAATAGATTCCGGCAC+TGG - chr4.1:8771528-8771547 None:intergenic 40.0%
GAGACTTGTCGAAAGATTGT+TGG + chr4.1:8771477-8771496 MS.gene70254:CDS 40.0%
TCAAAAGCTTCATGGTCTAG+TGG - chr4.1:8771558-8771577 None:intergenic 40.0%
TTGTGGAATCTCACACAAGA+AGG + chr4.1:8770974-8770993 MS.gene70254:CDS 40.0%
! ATGTTCGTTGCATCGACAAA+TGG + chr4.1:8771409-8771428 MS.gene70254:CDS 40.0%
! CAGTGCCGGAATCTATTATT+AGG + chr4.1:8771526-8771545 MS.gene70254:CDS 40.0%
!! GTTGATGATGGCTACGTTTA+GGG - chr4.1:8771184-8771203 None:intergenic 40.0%
ACAAGAAGCTCATGGAGAAG+TGG - chr4.1:8770958-8770977 None:intergenic 45.0%
ACTTCTCCATGAGCTTCTTG+TGG + chr4.1:8770957-8770976 MS.gene70254:CDS 45.0%
AGCTCTCAAGACATTTCCCA+CGG + chr4.1:8771269-8771288 MS.gene70254:CDS 45.0%
CAGCAACTCTTCACCTCAAT+TGG + chr4.1:8771224-8771243 MS.gene70254:CDS 45.0%
GAGATTCCACAAGAAGCTCA+TGG - chr4.1:8770966-8770985 None:intergenic 45.0%
TCACCTCAATTGGCCAACAA+AGG + chr4.1:8771234-8771253 MS.gene70254:CDS 45.0%
TCAGTTGAGTAGTTCACCGT+GGG - chr4.1:8771288-8771307 None:intergenic 45.0%
TCTTTCGACAAGTCTCAAGG+AGG - chr4.1:8771473-8771492 None:intergenic 45.0%
TGTGGTTGTGTGTGAGAACA+GGG - chr4.1:8771044-8771063 None:intergenic 45.0%
TTGTGGTTGTGTGTGAGAAC+AGG - chr4.1:8771045-8771064 None:intergenic 45.0%
! CGAAGAAGAGTCGTTGATGA+TGG - chr4.1:8771196-8771215 None:intergenic 45.0%
! GTTTAGGGCACACCTTACAA+TGG - chr4.1:8771169-8771188 None:intergenic 45.0%
!! CGTTGATGATGGCTACGTTT+AGG - chr4.1:8771185-8771204 None:intergenic 45.0%
CTCAGTTGAGTAGTTCACCG+TGG - chr4.1:8771289-8771308 None:intergenic 50.0%
GTGGTTGTGTGTGAGAACAG+GGG - chr4.1:8771043-8771062 None:intergenic 50.0%
!! AGGAGGCACTGTCTGCACTT+AGG - chr4.1:8771456-8771475 None:intergenic 55.0%
!! GATTCCGGCACTGGCAACAT+AGG - chr4.1:8771519-8771538 None:intergenic 55.0%
!! GGAGGCACTGTCTGCACTTA+GGG - chr4.1:8771455-8771474 None:intergenic 55.0%
GCCTCCTATGTTGCCAGTGC+CGG + chr4.1:8771512-8771531 MS.gene70254:CDS 60.0%
GTGAGAACAGGGGAGCTGGT+TGG - chr4.1:8771033-8771052 None:intergenic 60.0%
GTGTGTGAGAACAGGGGAGC+TGG - chr4.1:8771037-8771056 None:intergenic 60.0%
!! GGCACTGGCAACATAGGAGG+CGG - chr4.1:8771513-8771532 None:intergenic 60.0%
!! TCCGGCACTGGCAACATAGG+AGG - chr4.1:8771516-8771535 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 8770928 8771605 8770928 ID=MS.gene70254
chr4.1 mRNA 8770928 8771605 8770928 ID=MS.gene70254.t1;Parent=MS.gene70254
chr4.1 exon 8770928 8771605 8770928 ID=MS.gene70254.t1.exon1;Parent=MS.gene70254.t1
chr4.1 CDS 8770928 8771605 8770928 ID=cds.MS.gene70254.t1;Parent=MS.gene70254.t1
Gene Sequence

>MS.gene70254

ATGTATGCTTCTACTTCTTTTACTTCACCACTTCTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAAAATCCAATTGATTATCAATCACCAACCAGCTCCCCTGTTCTCACACACAACCACAATTCAACTAACTCGTATTTTGGTGCTCGTGAGTTTGAATCAAATGTTGTGATGATAGTTGCTGTCCTATTGTGTGCTATTATTTGCTCAATTGCATTAAACTCCATTGTAAGGTGTGCCCTAAACGTAGCCATCATCAACGACTCTTCTTCGAGTTCTAGCAGCAACTCTTCACCTCAATTGGCCAACAAAGGAATCAAGAAGAAAGCTCTCAAGACATTTCCCACGGTGAACTACTCAACTGAGTTGAAACTACCAAGTTTGGATGCAGAGTGTATGATATGTCTCTCAGATTTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAATCATGGTTTCCATGTTCGTTGCATCGACAAATGGCTAAAATCACACTCATCATGCCCTAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGATCAGAAGCACCGCCTCCTATGTTGCCAGTGCCGGAATCTATTATTAGGATTCAGCCACTAGACCATGAAGCTTTTGAATGTAACTATAGGGAAGAAAGCAGATAA
Protein sequence

>MS.gene70254.t1

MYASTSFTSPLLHELLVESHTRRLLFQNPIDYQSPTSSPVLTHNHNSTNSYFGAREFESNVVMIVAVLLCAIICSIALNSIVRCALNVAIINDSSSSSSSNSSPQLANKGIKKKALKTFPTVNYSTELKLPSLDAECMICLSDFTKGEKVRILPKCNHGFHVRCIDKWLKSHSSCPKCRQCLLETCRKIVGSEAPPPMLPVPESIIRIQPLDHEAFECNYREESR