AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58104

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58104.t1 MTR_8g093010 88.106 227 17 3 1 225 1 219 5.03e-142 396
MS.gene58104.t1 MTR_8g092840 85.778 225 31 1 1 224 1 225 9.74e-133 373
MS.gene58104.t1 MTR_8g092930 82.743 226 37 2 1 225 1 225 4.93e-127 358
MS.gene58104.t1 MTR_8g092970 80.973 226 33 2 1 225 1 217 2.76e-123 348
MS.gene58104.t1 MTR_8g092960 79.111 225 36 3 1 224 1 215 2.87e-119 338
MS.gene58104.t1 MTR_8g092990 82.819 227 37 2 1 225 1 227 2.91e-117 333
MS.gene58104.t1 MTR_8g092985 81.221 213 35 3 1 211 1 210 2.60e-113 323
MS.gene58104.t1 MTR_3g095560 62.232 233 74 4 1 225 1 227 3.51e-97 283
MS.gene58104.t1 MTR_3g094000 53.676 136 57 2 53 187 36 166 4.70e-43 143
MS.gene58104.t1 MTR_7g073200 46.835 158 73 4 45 198 18 168 5.61e-43 143
MS.gene58104.t1 MTR_5g024730 48.571 140 62 4 54 191 26 157 1.28e-36 128
MS.gene58104.t1 MTR_3g116000 46.575 146 65 4 58 198 26 163 1.15e-35 125
MS.gene58104.t1 MTR_8g073120 46.565 131 59 3 54 182 19 140 8.90e-34 120
MS.gene58104.t1 MTR_2g035800 39.073 151 80 4 33 183 7 145 3.39e-30 110
MS.gene58104.t1 MTR_4g094725 38.158 152 84 4 33 183 7 149 2.07e-29 107
MS.gene58104.t1 MTR_1g043410 27.273 154 96 3 39 183 20 166 1.17e-20 88.6
MS.gene58104.t1 MTR_7g113800 32.099 162 88 5 34 186 18 166 1.49e-20 89.0
MS.gene58104.t1 MTR_7g117540 32.593 135 89 1 54 188 17 149 2.76e-20 87.0
MS.gene58104.t1 MTR_1g082550 33.548 155 80 6 42 186 32 173 5.06e-20 87.4
MS.gene58104.t1 MTR_3g110190 35.878 131 76 4 61 188 15 140 2.54e-19 85.1
MS.gene58104.t1 MTR_1g100737 41.667 96 52 1 98 189 77 172 6.49e-19 81.6
MS.gene58104.t1 MTR_8g023400 45.570 79 40 2 113 190 92 168 6.86e-19 84.0
MS.gene58104.t1 MTR_8g066780 35.333 150 91 4 57 201 55 203 9.52e-19 84.0
MS.gene58104.t1 MTR_4g063070 43.210 81 45 1 103 182 298 378 4.41e-18 82.4
MS.gene58104.t1 MTR_5g082940 43.333 90 48 2 97 185 61 148 6.64e-18 78.2
MS.gene58104.t1 MTR_6g087150 33.813 139 87 3 47 183 27 162 7.60e-18 81.3
MS.gene58104.t1 MTR_4g120270 43.056 72 38 1 111 182 78 146 8.80e-18 80.1
MS.gene58104.t1 MTR_6g055030 46.575 73 37 1 112 182 96 168 1.89e-17 79.7
MS.gene58104.t1 MTR_3g071300 31.579 133 85 2 56 185 22 151 2.96e-17 76.6
MS.gene58104.t1 MTR_2g096350 42.529 87 45 2 135 221 130 211 3.18e-17 77.4
MS.gene58104.t1 MTR_7g076250 39.286 112 59 3 111 221 61 164 3.96e-17 76.6
MS.gene58104.t1 MTR_3g099650 42.308 78 43 1 111 186 105 182 8.48e-17 78.6
MS.gene58104.t1 MTR_2g436100 38.095 84 51 1 99 182 79 161 1.03e-16 77.4
MS.gene58104.t1 MTR_5g026730 30.818 159 89 5 49 197 2 149 1.17e-16 75.1
MS.gene58104.t1 MTR_4g056590 42.308 78 40 2 112 189 99 171 1.28e-16 75.5
MS.gene58104.t1 MTR_3g464780 43.590 78 41 1 112 186 101 178 1.39e-16 76.6
MS.gene58104.t1 MTR_5g071930 50.000 76 34 2 112 187 65 136 1.40e-16 75.5
MS.gene58104.t1 MTR_1g492830 36.364 88 55 1 112 199 60 146 1.72e-16 75.9
MS.gene58104.t1 MTR_5g064980 33.333 147 84 6 62 201 57 196 3.03e-16 77.0
MS.gene58104.t1 MTR_5g030010 30.496 141 86 3 57 186 55 194 3.71e-16 76.6
MS.gene58104.t1 MTR_7g116220 38.462 78 46 1 112 187 69 146 3.89e-16 73.9
MS.gene58104.t1 MTR_7g108855 36.111 108 59 3 100 198 53 159 5.71e-16 73.6
MS.gene58104.t1 MTR_4g129420 41.772 79 46 0 108 186 112 190 6.18e-16 76.3
MS.gene58104.t1 MTR_4g093830 33.645 107 61 2 113 219 126 222 7.36e-16 75.9
MS.gene58104.t1 MTR_8g089880 37.500 80 49 1 113 192 127 205 1.38e-15 73.9
MS.gene58104.t1 MTR_3g078470 36.735 98 60 2 89 185 53 149 1.68e-15 72.8
MS.gene58104.t1 MTR_3g078450 38.043 92 56 1 95 185 58 149 2.12e-15 72.8
MS.gene58104.t1 MTR_5g066250 41.667 72 41 1 111 182 132 202 2.41e-15 74.7
MS.gene58104.t1 MTR_4g030070 34.483 87 55 1 104 190 76 160 2.42e-15 72.8
MS.gene58104.t1 MTR_5g064990 30.435 138 90 4 52 186 55 189 2.43e-15 74.3
MS.gene58104.t1 MTR_4g108830 35.354 99 60 2 86 183 122 217 2.45e-15 72.4
MS.gene58104.t1 MTR_2g055790 31.967 122 74 2 65 186 34 146 3.35e-15 71.6
MS.gene58104.t1 MTR_5g064890 28.261 138 81 3 61 186 69 200 4.06e-15 73.6
MS.gene58104.t1 MTR_3g100400 41.667 72 41 1 111 182 128 198 5.29e-15 73.6
MS.gene58104.t1 MTR_3g086700 33.871 124 73 3 61 182 1 117 5.58e-15 70.9
MS.gene58104.t1 MTR_7g116180 38.462 78 46 1 110 185 64 141 6.88e-15 70.5
MS.gene58104.t1 MTR_2g009310 60.000 45 18 0 138 182 159 203 8.71e-15 72.8
MS.gene58104.t1 MTR_1g070425 38.462 78 46 1 110 185 65 142 9.46e-15 70.1
MS.gene58104.t1 MTR_5g092790 41.463 82 45 2 103 182 147 227 1.34e-14 70.9
MS.gene58104.t1 MTR_4g108830 35.052 97 59 2 88 183 96 189 1.44e-14 69.7
MS.gene58104.t1 MTR_3g114500 37.349 83 48 2 100 182 35 113 1.71e-14 68.2
MS.gene58104.t1 MTR_5g034790 39.130 92 52 2 97 185 97 187 1.86e-14 71.6
MS.gene58104.t1 MTR_3g086730 33.858 127 75 3 61 185 1 120 2.12e-14 70.1
MS.gene58104.t1 MTR_7g079280 31.148 122 70 3 103 223 70 178 2.52e-14 68.9
MS.gene58104.t1 MTR_8g028465 33.981 103 52 3 113 215 90 176 2.90e-14 69.3
MS.gene58104.t1 MTR_1g074190 31.967 122 69 3 81 190 62 181 3.09e-14 70.9
MS.gene58104.t1 MTR_1g070140 39.744 78 45 2 106 182 96 172 3.17e-14 70.9
MS.gene58104.t1 MTR_8g074900 41.333 75 39 1 111 185 156 225 3.44e-14 69.3
MS.gene58104.t1 MTR_6g007737 31.111 135 82 3 61 185 71 204 3.61e-14 70.9
MS.gene58104.t1 MTR_5g076990 30.882 136 87 2 54 182 13 148 5.32e-14 70.1
MS.gene58104.t1 MTR_6g007670 36.082 97 50 3 110 204 5 91 5.34e-14 69.3
MS.gene58104.t1 MTR_6g007670 43.662 71 40 0 112 182 144 214 2.74e-12 64.7
MS.gene58104.t1 MTR_1g056350 32.692 104 57 3 107 207 68 161 5.45e-14 67.8
MS.gene58104.t1 MTR_4g106680 35.354 99 57 2 109 201 102 199 5.84e-14 70.1
MS.gene58104.t1 MTR_8g063660 39.286 84 47 2 107 187 59 141 5.96e-14 70.1
MS.gene58104.t1 MTR_5g022920 38.961 77 46 1 110 185 158 234 6.34e-14 68.9
MS.gene58104.t1 MTR_2g090905 41.558 77 40 1 111 182 37 113 6.60e-14 66.6
MS.gene58104.t1 MTR_3g012550 30.189 106 64 2 113 217 80 176 6.97e-14 67.8
MS.gene58104.t1 MTR_2g090950 39.744 78 42 1 110 182 88 165 6.98e-14 68.9
MS.gene58104.t1 MTR_3g091620 35.714 98 62 1 89 186 77 173 1.00e-13 69.7
MS.gene58104.t1 MTR_3g091200 39.437 71 42 1 113 182 303 373 1.32e-13 69.3
MS.gene58104.t1 MTR_6g007680 41.096 73 42 1 110 182 37 108 1.34e-13 66.2
MS.gene58104.t1 MTR_2g041200 50.909 55 27 0 128 182 97 151 1.48e-13 67.0
MS.gene58104.t1 MTR_7g059360 45.455 66 35 1 119 183 136 201 1.58e-13 67.8
MS.gene58104.t1 MTR_5g092750 41.463 82 45 2 103 182 147 227 1.74e-13 67.8
MS.gene58104.t1 MTR_8g099495 40.845 71 41 1 113 182 319 389 1.78e-13 68.9
MS.gene58104.t1 MTR_5g009190 38.272 81 49 1 103 182 256 336 2.35e-13 68.6
MS.gene58104.t1 MTR_5g009210 40.845 71 41 1 113 182 287 357 2.70e-13 68.6
MS.gene58104.t1 MTR_5g026720 53.488 43 20 0 140 182 93 135 3.75e-13 65.5
MS.gene58104.t1 MTR_1g026070 27.500 120 80 3 63 182 1 113 4.17e-13 64.3
MS.gene58104.t1 MTR_8g032690 50.000 52 26 0 140 191 19 70 4.44e-13 63.9
MS.gene58104.t1 MTR_5g009200 40.845 71 41 1 113 182 322 392 4.97e-13 67.8
MS.gene58104.t1 MTR_7g079290 44.643 56 31 0 137 192 152 207 6.09e-13 65.9
MS.gene58104.t1 MTR_8g066740 30.709 127 81 2 63 182 22 148 7.18e-13 66.6
MS.gene58104.t1 MTR_3g087900 42.222 90 42 5 98 186 35 115 7.69e-13 64.3
MS.gene58104.t1 MTR_4g022410 30.657 137 88 3 63 199 43 172 7.85e-13 65.1
MS.gene58104.t1 MTR_8g019710 60.000 45 18 0 138 182 52 96 1.61e-12 63.2
MS.gene58104.t1 MTR_2g079320 32.407 108 64 2 85 185 99 204 1.92e-12 64.3
MS.gene58104.t1 MTR_8g071815 53.488 43 20 0 140 182 90 132 3.66e-12 63.2
MS.gene58104.t1 MTR_8g099515 41.667 72 39 2 113 182 309 379 4.02e-12 65.1
MS.gene58104.t1 MTR_7g116200 36.842 76 46 1 107 182 62 135 4.45e-12 62.8
MS.gene58104.t1 MTR_3g081030 35.802 81 50 1 119 199 100 178 5.34e-12 63.2
MS.gene58104.t1 MTR_3g078540 42.857 63 35 1 127 188 66 128 6.37e-12 61.6
MS.gene58104.t1 MTR_7g117350 27.419 124 81 2 68 182 241 364 6.67e-12 64.3
MS.gene58104.t1 MTR_7g117350 27.419 124 81 2 68 182 233 356 7.68e-12 64.3
MS.gene58104.t1 MTR_3g078120 32.283 127 81 4 61 182 1 127 8.46e-12 61.6
MS.gene58104.t1 MTR_3g078520 32.584 89 52 1 102 182 57 145 9.54e-12 61.6
MS.gene58104.t1 MTR_4g116460 39.726 73 34 4 116 182 415 483 1.54e-11 63.5
MS.gene58104.t1 MTR_4g116460 39.726 73 34 4 116 182 458 526 1.60e-11 63.5
MS.gene58104.t1 MTR_1g090480 30.657 137 89 3 58 188 14 150 2.19e-11 60.8
MS.gene58104.t1 MTR_8g027745 36.620 71 44 1 113 182 286 356 2.99e-11 62.4
MS.gene58104.t1 MTR_4g106960 54.000 50 22 1 133 182 171 219 3.64e-11 62.0
MS.gene58104.t1 MTR_4g106960 54.000 50 22 1 133 182 171 219 4.23e-11 62.0
MS.gene58104.t1 MTR_4g106960 54.000 50 22 1 133 182 228 276 4.45e-11 62.0
MS.gene58104.t1 MTR_4g106960 54.000 50 22 1 133 182 228 276 4.98e-11 62.0
MS.gene58104.t1 MTR_6g055030 53.659 41 19 0 142 182 97 137 5.09e-11 61.2
MS.gene58104.t1 MTR_8g009190 32.941 85 55 1 106 188 69 153 5.32e-11 61.6
MS.gene58104.t1 MTR_8g027980 33.333 75 48 1 116 188 93 167 8.29e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58104.t1 AT1G49230 48.869 221 87 5 11 223 17 219 1.29e-65 202
MS.gene58104.t1 AT1G49200 45.070 213 96 4 21 224 24 224 1.57e-62 194
MS.gene58104.t1 AT1G49210 47.887 213 90 4 21 224 23 223 1.71e-62 194
MS.gene58104.t1 AT1G49220 47.343 207 83 5 21 214 23 216 3.34e-62 194
MS.gene58104.t1 AT3G18773 43.304 224 109 5 6 224 8 218 1.53e-56 179
MS.gene58104.t1 AT5G05280 54.198 131 53 2 57 187 37 160 1.67e-45 149
MS.gene58104.t1 AT3G10910 51.880 133 60 2 57 186 29 160 9.31e-43 142
MS.gene58104.t1 AT1G76410 44.595 148 79 2 41 188 8 152 7.01e-39 133
MS.gene58104.t1 AT1G20823 41.341 179 77 4 11 186 4 157 3.83e-38 131
MS.gene58104.t1 AT5G01880 43.011 186 78 7 12 196 1 159 6.73e-32 114
MS.gene58104.t1 AT2G17450 42.647 136 57 4 58 185 25 147 8.48e-31 112
MS.gene58104.t1 AT5G47610 36.250 160 90 2 23 182 2 149 9.30e-30 108
MS.gene58104.t1 AT4G35480 35.838 173 87 4 58 216 23 185 2.14e-27 103
MS.gene58104.t1 AT4G17245 38.346 133 67 3 51 182 27 145 4.43e-25 97.1
MS.gene58104.t1 AT1G72200 32.716 162 102 5 45 201 47 206 8.85e-20 87.0
MS.gene58104.t1 AT2G35000 34.074 135 82 4 58 186 48 181 1.31e-19 86.7
MS.gene58104.t1 AT4G40070 32.948 173 94 5 24 191 20 175 2.66e-19 85.1
MS.gene58104.t1 AT1G72310 48.718 78 38 1 109 186 98 173 3.75e-19 84.7
MS.gene58104.t1 AT3G05200 36.567 134 76 4 59 187 46 175 8.59e-19 84.3
MS.gene58104.t1 AT4G09120 33.835 133 80 3 55 185 42 168 9.36e-19 84.0
MS.gene58104.t1 AT4G09110 33.846 130 78 3 55 182 42 165 1.53e-18 82.8
MS.gene58104.t1 AT1G35330 28.649 185 112 5 24 202 21 191 6.19e-18 81.3
MS.gene58104.t1 AT1G53820 44.156 77 41 1 109 185 91 165 9.43e-18 80.5
MS.gene58104.t1 AT2G20030 48.571 70 35 1 113 182 98 166 1.35e-17 80.9
MS.gene58104.t1 AT3G14320 47.887 71 35 1 113 183 63 131 1.89e-17 77.8
MS.gene58104.t1 AT3G16720 39.583 96 53 3 98 192 79 170 2.44e-17 79.3
MS.gene58104.t1 AT1G74410 38.462 91 55 1 95 185 132 221 4.38e-17 77.4
MS.gene58104.t1 AT2G27940 39.773 88 50 2 111 198 113 197 4.93e-17 77.4
MS.gene58104.t1 AT2G46494 30.657 137 89 2 52 182 222 358 5.51e-17 79.0
MS.gene58104.t1 AT5G27420 36.585 123 62 4 96 211 74 187 6.62e-17 79.0
MS.gene58104.t1 AT4G15975 34.400 125 79 2 95 219 33 154 7.97e-17 77.0
MS.gene58104.t1 AT2G25410 44.828 87 46 1 98 182 283 369 8.22e-17 78.6
MS.gene58104.t1 AT1G28040 39.604 101 54 3 87 182 197 295 9.78e-17 77.8
MS.gene58104.t1 AT4G28890 45.070 71 38 1 113 183 97 166 1.17e-16 78.6
MS.gene58104.t1 AT1G22500 30.872 149 97 3 53 198 31 176 1.19e-16 78.2
MS.gene58104.t1 AT2G18650 44.578 83 43 1 107 186 90 172 1.44e-16 78.2
MS.gene58104.t1 AT5G57750 29.861 144 93 1 48 183 22 165 1.57e-16 75.5
MS.gene58104.t1 AT4G17905 54.098 61 23 1 138 198 153 208 1.71e-16 77.0
MS.gene58104.t1 AT4G17905 54.098 61 23 1 138 198 179 234 1.73e-16 77.4
MS.gene58104.t1 AT4G30400 41.333 75 44 0 108 182 102 176 3.10e-16 77.4
MS.gene58104.t1 AT1G23980 33.333 168 90 7 38 186 26 190 4.21e-16 76.6
MS.gene58104.t1 AT3G03550 59.184 49 20 0 138 186 157 205 4.32e-16 76.3
MS.gene58104.t1 AT5G17600 38.889 90 54 1 93 182 96 184 4.69e-16 76.3
MS.gene58104.t1 AT3G19140 36.538 104 62 2 80 183 23 122 4.88e-16 72.8
MS.gene58104.t1 AT2G46493 38.889 90 50 2 98 182 91 180 8.93e-16 73.2
MS.gene58104.t1 AT4G09100 37.805 82 49 2 103 182 46 127 1.26e-15 71.2
MS.gene58104.t1 AT1G04360 29.545 132 83 2 61 182 45 176 1.43e-15 75.1
MS.gene58104.t1 AT4G09130 43.421 76 41 1 112 185 90 165 1.75e-15 74.7
MS.gene58104.t1 AT5G05810 43.056 72 40 1 111 182 118 188 2.18e-15 74.7
MS.gene58104.t1 AT3G18930 35.849 106 57 4 113 209 120 223 4.04e-15 73.9
MS.gene58104.t1 AT3G18930 35.849 106 57 4 113 209 120 223 4.04e-15 73.9
MS.gene58104.t1 AT3G18930 35.849 106 57 4 113 209 120 223 4.04e-15 73.9
MS.gene58104.t1 AT4G10160 33.858 127 74 4 63 186 24 143 4.46e-15 72.0
MS.gene58104.t1 AT5G10380 39.241 79 47 1 108 186 104 181 7.47e-15 72.4
MS.gene58104.t1 AT2G34990 33.333 126 78 4 61 182 37 160 7.50e-15 72.8
MS.gene58104.t1 AT2G34990 33.333 126 78 4 61 182 15 138 7.84e-15 72.4
MS.gene58104.t1 AT2G35910 35.789 95 51 2 113 207 121 205 1.08e-14 70.9
MS.gene58104.t1 AT3G48030 38.750 80 43 2 109 185 98 174 1.21e-14 71.6
MS.gene58104.t1 AT3G62690 30.636 173 100 5 53 214 18 181 1.24e-14 71.2
MS.gene58104.t1 AT5G66070 44.000 75 39 2 111 185 150 221 1.32e-14 70.5
MS.gene58104.t1 AT5G66070 44.000 75 39 2 111 185 150 221 1.32e-14 70.5
MS.gene58104.t1 AT1G72220 57.778 45 19 0 138 182 175 219 1.45e-14 72.4
MS.gene58104.t1 AT5G06490 34.653 101 51 2 113 207 96 187 1.50e-14 70.1
MS.gene58104.t1 AT5G42200 38.158 76 46 1 107 182 72 146 1.51e-14 69.3
MS.gene58104.t1 AT5G66070 44.000 75 39 2 111 185 174 245 1.95e-14 70.5
MS.gene58104.t1 AT2G35420 40.230 87 48 3 111 197 75 157 2.00e-14 70.5
MS.gene58104.t1 AT1G32361 33.588 131 76 5 94 218 108 233 2.17e-14 71.2
MS.gene58104.t1 AT3G48030 38.750 80 43 2 109 185 176 252 2.31e-14 71.2
MS.gene58104.t1 AT4G33565 52.941 51 24 0 138 188 215 265 4.23e-14 70.9
MS.gene58104.t1 AT2G46160 33.333 102 56 2 113 207 104 200 4.31e-14 68.9
MS.gene58104.t1 AT2G46160 33.333 102 56 2 113 207 104 200 4.31e-14 68.9
MS.gene58104.t1 AT5G58580 36.957 92 56 1 95 186 95 184 6.75e-14 69.7
MS.gene58104.t1 AT4G10150 28.966 145 93 4 46 186 19 157 9.31e-14 68.6
MS.gene58104.t1 AT5G53110 39.437 71 42 1 113 182 302 372 1.14e-13 69.7
MS.gene58104.t1 AT4G35840 35.870 92 57 1 96 185 145 236 1.62e-13 67.8
MS.gene58104.t1 AT2G42360 37.333 75 47 0 108 182 76 150 2.18e-13 67.4
MS.gene58104.t1 AT5G36001 63.043 46 17 0 137 182 261 306 2.25e-13 68.6
MS.gene58104.t1 AT4G17920 30.303 132 85 3 61 185 24 155 2.30e-13 68.2
MS.gene58104.t1 AT5G07040 35.211 71 45 1 113 182 66 136 3.10e-13 65.5
MS.gene58104.t1 AT3G11110 37.349 83 52 0 100 182 67 149 3.33e-13 65.5
MS.gene58104.t1 AT2G46495 31.746 126 77 4 64 182 239 362 4.31e-13 67.8
MS.gene58104.t1 AT2G18670 34.667 75 49 0 108 182 78 152 5.37e-13 65.5
MS.gene58104.t1 AT2G47560 32.143 140 89 3 44 182 16 150 6.21e-13 66.2
MS.gene58104.t1 AT2G46495 39.474 76 44 1 109 182 259 334 8.35e-13 67.0
MS.gene58104.t1 AT5G40250 50.000 48 24 0 139 186 142 189 8.58e-13 67.0
MS.gene58104.t1 AT5G43420 25.175 143 86 2 61 182 38 180 9.41e-13 67.0
MS.gene58104.t1 AT1G33480 33.784 74 47 1 113 186 75 146 1.04e-12 65.9
MS.gene58104.t1 AT2G17730 36.842 76 46 1 110 183 164 239 1.35e-12 65.5
MS.gene58104.t1 AT3G61550 40.476 84 41 2 137 220 133 207 1.41e-12 64.7
MS.gene58104.t1 AT2G34000 36.000 75 45 1 112 183 60 134 2.21e-12 63.2
MS.gene58104.t1 AT4G26400 44.118 68 30 2 115 182 223 282 3.82e-12 65.1
MS.gene58104.t1 AT4G26400 44.118 68 30 2 115 182 223 282 3.82e-12 65.1
MS.gene58104.t1 AT2G42350 37.333 75 45 1 108 182 70 142 6.52e-12 63.2
MS.gene58104.t1 AT5G56340 38.272 81 42 2 102 182 228 300 9.03e-12 63.9
MS.gene58104.t1 AT1G35630 42.254 71 39 2 114 183 207 276 1.10e-11 63.5
MS.gene58104.t1 AT1G53010 50.000 50 25 0 139 188 129 178 1.40e-11 61.6
MS.gene58104.t1 AT3G20395 36.264 91 54 2 96 185 129 216 2.95e-11 61.2
MS.gene58104.t1 AT5G52150 32.292 96 58 2 86 175 104 198 4.75e-11 60.5
MS.gene58104.t1 AT4G11360 37.374 99 46 4 94 186 45 133 5.12e-11 59.7
MS.gene58104.t1 AT4G26580 35.802 81 46 2 110 185 254 333 5.62e-11 61.6
MS.gene58104.t1 AT4G26580 35.802 81 46 2 110 185 254 333 5.62e-11 61.6
MS.gene58104.t1 AT2G03000 51.064 47 22 1 139 185 480 525 5.77e-11 62.0
MS.gene58104.t1 AT1G35625 40.845 71 40 2 114 183 207 276 6.01e-11 61.2
MS.gene58104.t1 AT3G47990 54.000 50 22 1 133 182 171 219 6.27e-11 61.2
MS.gene58104.t1 AT3G47990 54.000 50 22 1 133 182 171 219 6.27e-11 61.2
MS.gene58104.t1 AT3G47990 54.000 50 22 1 133 182 171 219 6.27e-11 61.2
MS.gene58104.t1 AT3G47990 54.000 50 22 1 133 182 228 276 6.64e-11 61.6
MS.gene58104.t1 AT3G47990 54.000 50 22 1 133 182 212 260 6.96e-11 61.2
MS.gene58104.t1 AT2G37580 52.273 44 21 0 139 182 141 184 7.22e-11 60.5
MS.gene58104.t1 AT5G46650 26.667 135 89 3 61 185 26 160 8.12e-11 60.8
MS.gene58104.t1 AT4G30370 35.616 73 46 1 111 183 87 158 8.46e-11 59.3

Find 47 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCATAAGGTGTGGTTTA+AGG 0.114506 4.2:+9453718 MS.gene58104:CDS
ACACCTTATGATGGAGTTTA+AGG 0.219673 4.2:-9453709 None:intergenic
TTTCTTCTTGATTCCTTTGT+TGG 0.230023 4.2:-9453808 None:intergenic
TTATGGTTGTTTGTTAAAAC+AGG 0.262480 4.2:-9453594 None:intergenic
CGAAGAAGAGTCGTTGTTTA+GGG 0.283250 4.2:-9453754 None:intergenic
TCGAAGAAGAGTCGTTGTTT+AGG 0.298317 4.2:-9453755 None:intergenic
TTCAAATGTTATAATGATAC+TGG 0.320890 4.2:+9453653 MS.gene58104:CDS
CAGTGCTAGAAACCGTTATA+AGG 0.329221 4.2:+9454084 MS.gene58104:CDS
TGAAATCCATGGTTGCATTT+AGG 0.353073 4.2:-9453948 None:intergenic
TGAGTTGAAACTACCAAGTT+TGG 0.353182 4.2:+9453866 MS.gene58104:CDS
AATATGAGTCTGTTGAATTA+TGG 0.355133 4.2:-9453611 None:intergenic
TCCAAAGCTTCATGCTCTAA+TGG 0.359601 4.2:-9454113 None:intergenic
GTTAGTGATTGATGATCAAC+TGG 0.362794 4.2:-9453564 None:intergenic
AATTCAACAGACTCATATTT+CGG 0.363143 4.2:+9453615 MS.gene58104:CDS
TCTAGCACTGGCACAACAAT+TGG 0.383583 4.2:-9454071 None:intergenic
ACCATTAGAGCATGAAGCTT+TGG 0.405256 4.2:+9454112 MS.gene58104:CDS
CAGCAACACATCACAACAAT+TGG 0.425791 4.2:+9453785 MS.gene58104:CDS
AAACTTGTAGAAAGATTGTT+GGG 0.429889 4.2:+9454039 MS.gene58104:CDS
GAAACTTGTAGAAAGATTGT+TGG 0.437661 4.2:+9454038 MS.gene58104:CDS
CTTATAACGGTTTCTAGCAC+TGG 0.474285 4.2:-9454083 None:intergenic
AGAGTTCACAAAGGGTGAAA+AGG 0.489010 4.2:+9453914 MS.gene58104:CDS
TAATGGTTGGACCCTTATAA+CGG 0.489916 4.2:-9454096 None:intergenic
ATGTGCGTTGCATTGACAAA+TGG 0.492413 4.2:+9453970 MS.gene58104:CDS
AGTGCTAGAAACCGTTATAA+GGG 0.501196 4.2:+9454085 MS.gene58104:CDS
CCTTAAACCACACCTTATGA+TGG 0.504302 4.2:-9453718 None:intergenic
TTGCCTTAAACTCCATCATA+AGG 0.507260 4.2:+9453706 MS.gene58104:CDS
AAGCTTCATGCTCTAATGGT+TGG 0.509803 4.2:-9454109 None:intergenic
TTGTGGAATCTCACACAAGA+AGG 0.511006 4.2:+9453526 MS.gene58104:CDS
ATGGAGAAGTGGTGAAGTAA+AGG 0.523047 4.2:-9453496 None:intergenic
ACTTCTCCATGAGCTTCTTG+TGG 0.539026 4.2:+9453509 MS.gene58104:CDS
ACACACTCTGTATCCAAACT+TGG 0.542352 4.2:-9453879 None:intergenic
TCTTTCTACAAGTTTCAAGA+AGG 0.552794 4.2:-9454031 None:intergenic
TCAGCTGAATAGCTCACTGT+GGG 0.566806 4.2:-9453846 None:intergenic
TTGCATTGACAAATGGCTAA+AGG 0.569827 4.2:+9453977 MS.gene58104:CDS
TATGGTTGTTTGTTAAAACA+GGG 0.577409 4.2:-9453593 None:intergenic
GAGATTCCACAAGAAGCTCA+TGG 0.584576 4.2:-9453515 None:intergenic
TGTCTCTCAGAGTTCACAAA+GGG 0.586259 4.2:+9453906 MS.gene58104:CDS
ATGGTTGTTTGTTAAAACAG+GGG 0.588201 4.2:-9453592 None:intergenic
AGAAGGCACTGTCTACACTT+AGG 0.588478 4.2:-9454014 None:intergenic
ACAAGAAGCTCATGGAGAAG+TGG 0.600282 4.2:-9453507 None:intergenic
TCACAACAATTGGCCAACAA+AGG 0.611058 4.2:+9453795 MS.gene58104:CDS
TTAAACTCCATCATAAGGTG+TGG 0.622192 4.2:+9453711 MS.gene58104:CDS
TGCAACGCACATGAAATCCA+TGG 0.639037 4.2:-9453959 None:intergenic
CTCAGCTGAATAGCTCACTG+TGG 0.665359 4.2:-9453847 None:intergenic
ATGTCTCTCAGAGTTCACAA+AGG 0.686490 4.2:+9453905 MS.gene58104:CDS
CAGCTGAATAGCTCACTGTG+GGG 0.730132 4.2:-9453845 None:intergenic
TTAGTGATTGATGATCAACT+GGG 0.748243 4.2:-9453563 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAATGTTATAATGATAC+TGG + chr4.2:9453653-9453672 MS.gene58104:CDS 20.0%
! AAACTTGTAGAAAGATTGTT+GGG + chr4.2:9454039-9454058 MS.gene58104:CDS 25.0%
! AATATGAGTCTGTTGAATTA+TGG - chr4.2:9453614-9453633 None:intergenic 25.0%
! AATTCAACAGACTCATATTT+CGG + chr4.2:9453615-9453634 MS.gene58104:CDS 25.0%
!! TATGGTTGTTTGTTAAAACA+GGG - chr4.2:9453596-9453615 None:intergenic 25.0%
!! TTATGGTTGTTTGTTAAAAC+AGG - chr4.2:9453597-9453616 None:intergenic 25.0%
GAAACTTGTAGAAAGATTGT+TGG + chr4.2:9454038-9454057 MS.gene58104:CDS 30.0%
TCTTTCTACAAGTTTCAAGA+AGG - chr4.2:9454034-9454053 None:intergenic 30.0%
TTTCTTCTTGATTCCTTTGT+TGG - chr4.2:9453811-9453830 None:intergenic 30.0%
! ATGGTTGTTTGTTAAAACAG+GGG - chr4.2:9453595-9453614 None:intergenic 30.0%
! TTAGTGATTGATGATCAACT+GGG - chr4.2:9453566-9453585 None:intergenic 30.0%
AGTGCTAGAAACCGTTATAA+GGG + chr4.2:9454085-9454104 MS.gene58104:CDS 35.0%
TAATGGTTGGACCCTTATAA+CGG - chr4.2:9454099-9454118 None:intergenic 35.0%
TGAAATCCATGGTTGCATTT+AGG - chr4.2:9453951-9453970 None:intergenic 35.0%
TTAAACTCCATCATAAGGTG+TGG + chr4.2:9453711-9453730 MS.gene58104:CDS 35.0%
TTGCCTTAAACTCCATCATA+AGG + chr4.2:9453706-9453725 MS.gene58104:CDS 35.0%
! ACACCTTATGATGGAGTTTA+AGG - chr4.2:9453712-9453731 None:intergenic 35.0%
! ATTTTGCCTAAATGCAACCA+TGG + chr4.2:9453942-9453961 MS.gene58104:CDS 35.0%
! GTTAGTGATTGATGATCAAC+TGG - chr4.2:9453567-9453586 None:intergenic 35.0%
! TGAGTTGAAACTACCAAGTT+TGG + chr4.2:9453866-9453885 MS.gene58104:CDS 35.0%
! TTGCATTGACAAATGGCTAA+AGG + chr4.2:9453977-9453996 MS.gene58104:CDS 35.0%
AAGCTTCATGCTCTAATGGT+TGG - chr4.2:9454112-9454131 None:intergenic 40.0%
ACACACTCTGTATCCAAACT+TGG - chr4.2:9453882-9453901 None:intergenic 40.0%
ACCATTAGAGCATGAAGCTT+TGG + chr4.2:9454112-9454131 MS.gene58104:CDS 40.0%
AGAGTTCACAAAGGGTGAAA+AGG + chr4.2:9453914-9453933 MS.gene58104:CDS 40.0%
ATGGAGAAGTGGTGAAGTAA+AGG - chr4.2:9453499-9453518 None:intergenic 40.0%
ATGTCTCTCAGAGTTCACAA+AGG + chr4.2:9453905-9453924 MS.gene58104:CDS 40.0%
CAGCAACACATCACAACAAT+TGG + chr4.2:9453785-9453804 MS.gene58104:CDS 40.0%
CAGTGCTAGAAACCGTTATA+AGG + chr4.2:9454084-9454103 MS.gene58104:CDS 40.0%
CCATCATAAGGTGTGGTTTA+AGG + chr4.2:9453718-9453737 MS.gene58104:CDS 40.0%
CCTTAAACCACACCTTATGA+TGG - chr4.2:9453721-9453740 None:intergenic 40.0%
CGAAGAAGAGTCGTTGTTTA+GGG - chr4.2:9453757-9453776 None:intergenic 40.0%
TCACAACAATTGGCCAACAA+AGG + chr4.2:9453795-9453814 MS.gene58104:CDS 40.0%
TCCAAAGCTTCATGCTCTAA+TGG - chr4.2:9454116-9454135 None:intergenic 40.0%
TCGAAGAAGAGTCGTTGTTT+AGG - chr4.2:9453758-9453777 None:intergenic 40.0%
TGTCTCTCAGAGTTCACAAA+GGG + chr4.2:9453906-9453925 MS.gene58104:CDS 40.0%
TTGTGGAATCTCACACAAGA+AGG + chr4.2:9453526-9453545 MS.gene58104:CDS 40.0%
! ATGTGCGTTGCATTGACAAA+TGG + chr4.2:9453970-9453989 MS.gene58104:CDS 40.0%
!! CTTATAACGGTTTCTAGCAC+TGG - chr4.2:9454086-9454105 None:intergenic 40.0%
ACAAGAAGCTCATGGAGAAG+TGG - chr4.2:9453510-9453529 None:intergenic 45.0%
ACTTCTCCATGAGCTTCTTG+TGG + chr4.2:9453509-9453528 MS.gene58104:CDS 45.0%
GAGATTCCACAAGAAGCTCA+TGG - chr4.2:9453518-9453537 None:intergenic 45.0%
TCAGCTGAATAGCTCACTGT+GGG - chr4.2:9453849-9453868 None:intergenic 45.0%
TGCAACGCACATGAAATCCA+TGG - chr4.2:9453962-9453981 None:intergenic 45.0%
!! AGAAGGCACTGTCTACACTT+AGG - chr4.2:9454017-9454036 None:intergenic 45.0%
!! TCTAGCACTGGCACAACAAT+TGG - chr4.2:9454074-9454093 None:intergenic 45.0%
CAGCTGAATAGCTCACTGTG+GGG - chr4.2:9453848-9453867 None:intergenic 50.0%
CTCAGCTGAATAGCTCACTG+TGG - chr4.2:9453850-9453869 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 9453480 9454157 9453480 ID=MS.gene58104
chr4.2 mRNA 9453480 9454157 9453480 ID=MS.gene58104.t1;Parent=MS.gene58104
chr4.2 exon 9453480 9454157 9453480 ID=MS.gene58104.t1.exon1;Parent=MS.gene58104.t1
chr4.2 CDS 9453480 9454157 9453480 ID=cds.MS.gene58104.t1;Parent=MS.gene58104.t1
Gene Sequence

>MS.gene58104

ATGTATACTTCTACTTCCTTTACTTCACCACTTCTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCATTCAAAACCCAGTTGATCATCAATCACTAACAAACTCCCCTGTTTTAACAAACAACCATAATTCAACAGACTCATATTTCGGAGCTCGTGAATTTAATTCAAATGTTATAATGATACTGGCAGTTCTATTGTGTGCTCTTATTTGCTCACTTGCCTTAAACTCCATCATAAGGTGTGGTTTAAGGTTTTCAAACGTAGCCCTAAACAACGACTCTTCTTCGAGTTCGAGCAGCAACACATCACAACAATTGGCCAACAAAGGAATCAAGAAGAAAGCTCTCAAAACATTCCCCACAGTGAGCTATTCAGCTGAGTTGAAACTACCAAGTTTGGATACAGAGTGTGTGATATGTCTCTCAGAGTTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCATGGATTTCATGTGCGTTGCATTGACAAATGGCTAAAGGAACACTCATCATGTCCTAAGTGTAGACAGTGCCTTCTTGAAACTTGTAGAAAGATTGTTGGGTCACAACAACCAATTGTTGTGCCAGTGCTAGAAACCGTTATAAGGGTCCAACCATTAGAGCATGAAGCTTTGGAACGTAACTACAGAGAAATATAA
Protein sequence

>MS.gene58104.t1

MYTSTSFTSPLLHELLVESHTRRLLIQNPVDHQSLTNSPVLTNNHNSTDSYFGAREFNSNVIMILAVLLCALICSLALNSIIRCGLRFSNVALNNDSSSSSSSNTSQQLANKGIKKKALKTFPTVSYSAELKLPSLDTECVICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCRKIVGSQQPIVVPVLETVIRVQPLEHEALERNYREI