AlfalfaGEDB | MS.gene28428

M. sativa cultivar XinJiangDaYe / MS.gene28428

KEGG: K19040
GO: -
PFAM: PF13639.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28428.t1	XP_003630206.2	85.8	225	25	1	1	225	1	218	3.60E-103	384.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28428.t1	Q6NML0	45.1	213	98	4	21	224	23	225	5.0e-45	182.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28428.t1	A0A2Z6NGL8	85.5	228	29	2	1	225	1	227	1.1e-96	362.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051874	MS.gene28428	-0.802453	5.57E-49	-1.69E-46
MS.gene05240	MS.gene28428	0.80262	5.15E-49	-1.69E-46
MS.gene052702	MS.gene28428	0.805265	1.45E-49	-1.69E-46
MS.gene054181	MS.gene28428	0.826651	2.41E-54	-1.69E-46
MS.gene059402	MS.gene28428	0.821249	4.46E-53	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene28428	MS.gene58107	PPI
MS.gene58109	MS.gene28428	PPI
MS.gene28428	MS.gene58106	PPI
MS.gene28428	MS.gene013346	PPI
MS.gene28424	MS.gene28428	PPI
MS.gene70256	MS.gene28428	PPI
MS.gene28428	MS.gene76770	PPI
MS.gene28428	MS.gene030659	PPI
MS.gene28428	MS.gene94889	PPI
MS.gene70253	MS.gene28428	PPI
MS.gene28428	MS.gene28425	PPI
MS.gene28428	MS.gene88015	PPI
MS.gene28428	MS.gene70250	PPI
MS.gene28428	MS.gene48772	PPI
MS.gene28428	MS.gene030651	PPI
MS.gene28428	MS.gene030655	PPI
MS.gene28428	MS.gene31002	PPI
MS.gene58111	MS.gene28428	PPI
MS.gene28428	MS.gene030652	PPI
MS.gene28426	MS.gene28428	PPI
MS.gene28428	MS.gene70254	PPI
MS.gene06444	MS.gene28428	PPI
MS.gene58108	MS.gene28428	PPI
MS.gene28429	MS.gene28428	PPI
MS.gene28428	MS.gene030660	PPI
MS.gene28428	MS.gene28430	PPI
MS.gene70249	MS.gene28428	PPI
MS.gene28428	MS.gene28427	PPI
MS.gene58105	MS.gene28428	PPI
MS.gene28428	MS.gene030653	PPI
MS.gene049319	MS.gene28428	PPI
MS.gene28428	MS.gene58110	PPI
MS.gene28428	MS.gene28431	PPI
MS.gene28428	MS.gene030656	PPI
MS.gene28428	MS.gene58104	PPI
MS.gene28428	MS.gene70257	PPI
MS.gene030654	MS.gene28428	PPI
MS.gene030658	MS.gene28428	PPI
MS.gene28428	MS.gene030657	PPI
MS.gene28428	MS.gene70255	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28428.t1	MTR_8g092840	92.544	228	14	1	1	225	1	228	1.40e-148	412
MS.gene28428.t1	MTR_8g092960	91.111	225	13	1	1	225	1	218	1.96e-141	394
MS.gene28428.t1	MTR_8g093010	77.533	227	37	5	1	222	1	218	9.31e-120	339
MS.gene28428.t1	MTR_8g092970	79.279	222	40	1	1	222	1	216	2.35e-119	338
MS.gene28428.t1	MTR_8g092930	76.444	225	49	2	1	222	1	224	1.30e-114	327
MS.gene28428.t1	MTR_8g092985	78.571	210	44	1	1	209	1	210	1.07e-110	316
MS.gene28428.t1	MTR_8g092990	76.991	226	48	2	1	222	1	226	6.24e-108	310
MS.gene28428.t1	MTR_3g095560	60.965	228	81	4	1	222	1	226	7.68e-93	272
MS.gene28428.t1	MTR_3g094000	51.880	133	61	2	53	184	36	166	9.84e-42	140
MS.gene28428.t1	MTR_7g073200	43.671	158	81	4	42	195	15	168	5.58e-41	138
MS.gene28428.t1	MTR_5g024730	48.905	137	63	4	54	188	26	157	7.58e-37	129
MS.gene28428.t1	MTR_3g116000	45.775	142	71	4	58	197	26	163	4.40e-35	123
MS.gene28428.t1	MTR_8g073120	46.923	130	57	4	54	179	19	140	8.99e-34	120
MS.gene28428.t1	MTR_2g035800	39.073	151	83	3	30	180	4	145	4.66e-32	114
MS.gene28428.t1	MTR_4g094725	38.926	149	80	3	33	180	11	149	1.57e-30	110
MS.gene28428.t1	MTR_1g100737	44.792	96	49	1	95	186	77	172	2.43e-20	85.5
MS.gene28428.t1	MTR_1g082550	34.000	150	83	4	42	183	32	173	9.37e-20	86.7
MS.gene28428.t1	MTR_3g071300	33.846	130	83	1	56	182	22	151	2.49e-19	82.0
MS.gene28428.t1	MTR_8g023400	45.570	79	40	2	110	187	92	168	2.61e-19	85.1
MS.gene28428.t1	MTR_3g110190	46.154	78	41	1	108	185	64	140	3.14e-19	85.1
MS.gene28428.t1	MTR_7g113800	35.333	150	76	8	44	183	28	166	4.09e-19	84.7
MS.gene28428.t1	MTR_6g055030	37.931	116	66	2	66	179	57	168	5.00e-19	84.0
MS.gene28428.t1	MTR_7g117540	57.895	57	24	0	129	185	93	149	3.79e-18	81.3
MS.gene28428.t1	MTR_4g120270	44.595	74	34	2	108	179	78	146	4.32e-18	80.9
MS.gene28428.t1	MTR_4g063070	44.444	81	44	1	100	179	298	378	4.77e-18	82.0
MS.gene28428.t1	MTR_1g043410	26.623	154	93	3	39	180	21	166	6.68e-18	81.3
MS.gene28428.t1	MTR_1g492830	30.380	158	94	3	61	218	22	163	6.95e-18	79.3
MS.gene28428.t1	MTR_5g082940	45.455	88	45	2	96	182	63	148	1.81e-17	77.0
MS.gene28428.t1	MTR_3g078450	34.351	131	79	3	91	220	57	181	1.82e-17	78.2
MS.gene28428.t1	MTR_6g087150	32.468	154	91	3	30	180	19	162	1.95e-17	80.1
MS.gene28428.t1	MTR_3g099650	43.590	78	42	1	108	183	105	182	2.18e-17	80.1
MS.gene28428.t1	MTR_4g056590	43.590	78	39	2	109	186	99	171	3.90e-17	76.6
MS.gene28428.t1	MTR_2g096350	61.702	47	18	0	133	179	131	177	4.15e-17	77.4
MS.gene28428.t1	MTR_7g116220	39.744	78	45	1	109	184	69	146	5.37e-17	76.3
MS.gene28428.t1	MTR_3g078470	32.258	124	82	2	61	182	26	149	5.59e-17	77.0
MS.gene28428.t1	MTR_5g071930	50.000	76	34	2	109	184	65	136	7.32e-17	76.3
MS.gene28428.t1	MTR_5g064980	37.374	99	57	2	86	182	87	182	7.41e-17	78.6
MS.gene28428.t1	MTR_3g464780	43.590	78	41	1	109	183	101	178	7.58e-17	77.4
MS.gene28428.t1	MTR_4g129420	43.038	79	45	0	105	183	112	190	1.36e-16	78.2
MS.gene28428.t1	MTR_2g055790	36.697	109	62	2	78	183	42	146	2.35e-16	74.7
MS.gene28428.t1	MTR_8g066780	38.053	113	61	3	105	216	109	213	2.79e-16	77.0
MS.gene28428.t1	MTR_2g436100	38.750	80	48	1	100	179	83	161	4.93e-16	75.5
MS.gene28428.t1	MTR_7g076250	41.667	72	42	0	108	179	61	132	5.21e-16	73.6
MS.gene28428.t1	MTR_5g030010	39.241	79	47	1	105	183	117	194	6.09e-16	75.9
MS.gene28428.t1	MTR_8g089880	37.500	80	49	1	110	189	127	205	8.95e-16	74.7
MS.gene28428.t1	MTR_3g100400	43.056	72	40	1	108	179	128	198	1.08e-15	75.5
MS.gene28428.t1	MTR_7g116180	39.744	78	45	1	107	182	64	141	1.46e-15	72.4
MS.gene28428.t1	MTR_4g030070	34.091	88	56	1	100	187	75	160	1.47e-15	73.2
MS.gene28428.t1	MTR_4g093830	42.857	70	39	1	110	179	126	194	1.53e-15	74.7
MS.gene28428.t1	MTR_1g070425	39.744	78	45	1	107	182	65	142	2.35e-15	71.6
MS.gene28428.t1	MTR_1g070140	38.961	77	47	0	103	179	96	172	3.34e-15	73.6
MS.gene28428.t1	MTR_1g074190	35.870	92	50	2	103	187	92	181	5.17e-15	73.2
MS.gene28428.t1	MTR_2g009310	60.000	45	18	0	135	179	159	203	5.82e-15	73.2
MS.gene28428.t1	MTR_5g064890	38.462	78	47	1	106	183	124	200	6.54e-15	72.8
MS.gene28428.t1	MTR_7g108855	35.185	108	60	3	97	195	53	159	6.73e-15	70.9
MS.gene28428.t1	MTR_2g090950	41.026	78	41	1	107	179	88	165	7.08e-15	71.6
MS.gene28428.t1	MTR_6g007737	31.852	135	78	3	61	182	71	204	8.00e-15	72.8
MS.gene28428.t1	MTR_5g064990	39.744	78	45	1	108	183	112	189	8.26e-15	72.8
MS.gene28428.t1	MTR_3g086700	32.203	118	73	2	72	182	3	120	1.06e-14	70.1
MS.gene28428.t1	MTR_5g026730	27.481	131	91	2	53	179	6	136	1.22e-14	69.7
MS.gene28428.t1	MTR_3g114500	30.769	117	77	2	63	179	1	113	1.40e-14	68.2
MS.gene28428.t1	MTR_3g091620	41.892	74	42	1	110	183	101	173	2.12e-14	71.6
MS.gene28428.t1	MTR_5g009210	39.506	81	48	1	100	179	277	357	2.15e-14	71.6
MS.gene28428.t1	MTR_5g066250	40.278	72	42	1	108	179	132	202	2.16e-14	71.6
MS.gene28428.t1	MTR_2g090905	41.558	77	40	1	108	179	37	113	2.31e-14	67.8
MS.gene28428.t1	MTR_5g034790	41.772	79	41	2	106	182	112	187	2.46e-14	71.2
MS.gene28428.t1	MTR_5g092790	41.463	82	45	2	100	179	147	227	3.22e-14	69.7
MS.gene28428.t1	MTR_3g086730	32.203	118	73	2	72	182	3	120	3.73e-14	69.7
MS.gene28428.t1	MTR_3g012550	26.923	130	93	2	52	179	21	150	4.30e-14	68.2
MS.gene28428.t1	MTR_4g106680	39.189	74	44	1	106	179	102	174	4.80e-14	70.1
MS.gene28428.t1	MTR_5g009190	37.805	82	50	1	100	180	256	337	5.72e-14	70.1
MS.gene28428.t1	MTR_1g056350	37.662	77	44	2	106	179	70	145	7.49e-14	67.4
MS.gene28428.t1	MTR_8g028465	38.028	71	41	1	110	180	90	157	7.70e-14	68.2
MS.gene28428.t1	MTR_8g074900	33.333	123	68	2	69	182	108	225	8.28e-14	68.6
MS.gene28428.t1	MTR_8g063660	37.975	79	48	1	106	184	64	141	8.28e-14	69.7
MS.gene28428.t1	MTR_8g099495	38.462	78	47	1	104	180	313	390	1.15e-13	69.7
MS.gene28428.t1	MTR_3g091200	28.070	171	102	5	18	179	215	373	1.29e-13	69.3
MS.gene28428.t1	MTR_2g041200	34.109	129	64	3	61	179	34	151	1.37e-13	67.0
MS.gene28428.t1	MTR_5g076990	30.147	136	85	3	54	179	13	148	1.38e-13	68.9
MS.gene28428.t1	MTR_3g078120	33.858	127	76	3	61	179	1	127	1.86e-13	65.9
MS.gene28428.t1	MTR_4g108830	34.043	94	60	1	87	180	98	189	1.91e-13	66.6
MS.gene28428.t1	MTR_4g108830	34.043	94	60	1	87	180	126	217	2.06e-13	67.4
MS.gene28428.t1	MTR_7g079290	41.270	63	37	0	132	194	150	212	2.15e-13	67.0
MS.gene28428.t1	MTR_6g007670	41.096	73	41	1	107	179	5	75	2.83e-13	67.4
MS.gene28428.t1	MTR_6g007670	43.662	71	40	0	109	179	144	214	6.33e-12	63.5
MS.gene28428.t1	MTR_5g026720	53.488	43	20	0	137	179	93	135	3.18e-13	65.5
MS.gene28428.t1	MTR_7g059360	43.478	69	38	1	113	180	133	201	4.18e-13	66.6
MS.gene28428.t1	MTR_6g007680	39.726	73	43	1	107	179	37	108	4.56e-13	65.1
MS.gene28428.t1	MTR_5g092750	41.463	82	45	2	100	179	147	227	4.60e-13	66.6
MS.gene28428.t1	MTR_5g022920	37.662	77	47	1	107	182	158	234	5.26e-13	66.2
MS.gene28428.t1	MTR_5g009200	37.037	81	50	1	100	179	312	392	5.57e-13	67.4
MS.gene28428.t1	MTR_8g032690	50.000	52	26	0	137	188	19	70	6.72e-13	63.2
MS.gene28428.t1	MTR_1g026070	27.350	117	81	1	63	179	1	113	7.06e-13	63.9
MS.gene28428.t1	MTR_7g079280	36.364	77	48	1	110	185	80	156	7.59e-13	65.1
MS.gene28428.t1	MTR_8g019710	60.000	45	18	0	135	179	52	96	9.70e-13	63.5
MS.gene28428.t1	MTR_3g087900	49.231	65	28	3	120	183	55	115	1.25e-12	63.9
MS.gene28428.t1	MTR_8g071815	53.488	43	20	0	137	179	90	132	3.66e-12	63.2
MS.gene28428.t1	MTR_7g116200	38.356	73	43	1	107	179	65	135	3.89e-12	62.8
MS.gene28428.t1	MTR_4g022410	34.951	103	62	2	93	195	74	171	4.40e-12	63.2
MS.gene28428.t1	MTR_8g066740	29.688	128	80	3	62	179	21	148	6.55e-12	63.9
MS.gene28428.t1	MTR_8g099515	41.667	72	39	2	110	179	309	379	6.96e-12	64.3
MS.gene28428.t1	MTR_3g081030	33.333	96	60	2	100	195	86	177	6.99e-12	62.8
MS.gene28428.t1	MTR_7g096690	26.357	129	85	4	61	179	14	142	8.52e-12	63.9
MS.gene28428.t1	MTR_7g117350	26.829	123	82	2	63	180	246	365	1.40e-11	63.5
MS.gene28428.t1	MTR_7g117350	26.829	123	82	2	63	180	238	357	1.46e-11	63.5
MS.gene28428.t1	MTR_8g027745	36.620	71	44	1	110	179	286	356	3.16e-11	62.4
MS.gene28428.t1	MTR_5g096410	37.778	90	41	3	107	182	238	326	3.78e-11	62.0
MS.gene28428.t1	MTR_5g096410	37.778	90	41	3	107	182	250	338	3.81e-11	62.0
MS.gene28428.t1	MTR_5g096410	37.778	90	41	3	107	182	247	335	3.91e-11	62.0
MS.gene28428.t1	MTR_6g055030	53.659	41	19	0	139	179	97	137	4.49e-11	61.6
MS.gene28428.t1	MTR_7g116210	36.986	73	44	1	107	179	7	77	5.20e-11	58.5
MS.gene28428.t1	MTR_5g041310	56.818	44	18	1	136	179	114	156	5.45e-11	60.5
MS.gene28428.t1	MTR_4g106960	57.778	45	18	1	135	179	176	219	6.26e-11	61.6
MS.gene28428.t1	MTR_4g106960	57.778	45	18	1	135	179	176	219	6.32e-11	61.2
MS.gene28428.t1	MTR_2g079320	48.936	47	24	0	136	182	158	204	6.53e-11	60.1
MS.gene28428.t1	MTR_3g078540	41.270	63	36	1	124	185	66	128	7.65e-11	58.9
MS.gene28428.t1	MTR_4g106960	57.778	45	18	1	135	179	233	276	7.98e-11	61.2
MS.gene28428.t1	MTR_8g027980	33.333	75	48	1	113	185	93	167	8.05e-11	60.5
MS.gene28428.t1	MTR_4g106960	57.778	45	18	1	135	179	233	276	8.77e-11	61.2
MS.gene28428.t1	MTR_5g041330	56.818	44	18	1	136	179	104	146	8.97e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28428.t1	AT1G49230	48.357	213	88	5	11	216	17	214	2.97e-63	196
MS.gene28428.t1	AT1G49210	46.479	213	95	4	21	224	23	225	8.92e-60	187
MS.gene28428.t1	AT1G49220	50.556	180	69	4	21	192	23	190	4.53e-59	187
MS.gene28428.t1	AT1G49200	45.540	213	97	4	21	224	24	226	5.97e-59	186
MS.gene28428.t1	AT3G18773	44.298	228	103	8	6	224	8	220	2.57e-54	174
MS.gene28428.t1	AT5G05280	52.273	132	51	3	57	184	37	160	9.58e-42	140
MS.gene28428.t1	AT3G10910	48.649	148	61	4	57	198	29	167	1.77e-41	139
MS.gene28428.t1	AT1G76410	44.828	145	80	0	41	185	8	152	6.43e-39	133
MS.gene28428.t1	AT1G20823	41.566	166	81	4	23	183	3	157	4.92e-37	129
MS.gene28428.t1	AT5G01880	41.304	184	81	6	12	193	1	159	1.75e-31	113
MS.gene28428.t1	AT2G17450	42.748	131	61	2	58	182	25	147	1.21e-30	112
MS.gene28428.t1	AT4G35480	40.000	140	67	3	58	183	23	159	9.07e-29	107
MS.gene28428.t1	AT5G47610	33.758	157	95	2	23	179	2	149	1.62e-27	103
MS.gene28428.t1	AT4G17245	36.154	130	71	3	51	179	27	145	1.37e-24	95.9
MS.gene28428.t1	AT4G09120	36.364	121	72	2	64	182	51	168	2.21e-20	88.2
MS.gene28428.t1	AT4G09110	36.364	121	72	2	64	182	51	168	4.97e-20	86.7
MS.gene28428.t1	AT1G23980	34.682	173	88	6	34	183	20	190	1.23e-19	86.7
MS.gene28428.t1	AT1G72310	48.718	78	38	1	106	183	98	173	2.94e-19	84.7
MS.gene28428.t1	AT3G05200	35.000	140	88	2	48	184	36	175	3.19e-19	85.5
MS.gene28428.t1	AT2G27940	39.604	101	58	2	96	196	101	198	7.77e-19	82.4
MS.gene28428.t1	AT1G72200	31.410	156	84	5	61	209	62	201	1.66e-18	83.6
MS.gene28428.t1	AT1G53820	44.872	78	39	2	106	182	91	165	2.33e-18	82.4
MS.gene28428.t1	AT3G14320	35.000	120	75	2	62	180	14	131	3.25e-18	80.1
MS.gene28428.t1	AT4G40070	32.432	148	92	4	64	206	49	193	4.29e-18	81.6
MS.gene28428.t1	AT1G22500	32.192	146	96	2	53	195	31	176	4.33e-18	82.4
MS.gene28428.t1	AT1G74410	39.130	92	55	1	91	182	131	221	1.81e-17	78.6
MS.gene28428.t1	AT3G16720	40.206	97	53	3	99	194	83	175	1.82e-17	79.7
MS.gene28428.t1	AT1G35330	32.558	129	76	2	65	182	46	174	3.23e-17	79.3
MS.gene28428.t1	AT5G57750	41.333	75	44	0	106	180	91	165	3.55e-17	77.4
MS.gene28428.t1	AT4G30400	42.667	75	43	0	105	179	102	176	4.73e-17	79.7
MS.gene28428.t1	AT2G35000	33.333	132	77	3	62	183	51	181	4.83e-17	79.3
MS.gene28428.t1	AT5G27420	39.394	99	52	3	93	184	74	171	8.62e-17	78.6
MS.gene28428.t1	AT2G25410	36.667	120	69	3	64	179	253	369	8.97e-17	78.6
MS.gene28428.t1	AT2G20030	47.143	70	36	1	110	179	98	166	1.60e-16	77.8
MS.gene28428.t1	AT1G04360	30.534	131	78	3	62	179	46	176	1.64e-16	77.8
MS.gene28428.t1	AT4G15975	36.082	97	60	1	86	182	27	121	2.06e-16	75.9
MS.gene28428.t1	AT4G17905	66.667	45	15	0	135	179	179	223	2.24e-16	77.0
MS.gene28428.t1	AT4G17905	66.667	45	15	0	135	179	153	197	2.28e-16	76.6
MS.gene28428.t1	AT2G18650	43.590	78	44	0	106	183	95	172	2.35e-16	77.4
MS.gene28428.t1	AT5G17600	43.056	72	40	1	108	179	114	184	3.68e-16	76.6
MS.gene28428.t1	AT3G03550	59.184	49	20	0	135	183	157	205	4.32e-16	76.3
MS.gene28428.t1	AT4G09100	39.024	82	48	2	100	179	46	127	4.91e-16	72.4
MS.gene28428.t1	AT4G09130	44.737	76	40	1	109	182	90	165	5.28e-16	76.3
MS.gene28428.t1	AT2G46493	42.667	75	42	1	106	179	106	180	6.22e-16	73.6
MS.gene28428.t1	AT4G10160	31.429	140	86	4	50	183	8	143	7.58e-16	73.9
MS.gene28428.t1	AT4G28890	43.662	71	39	1	110	180	97	166	1.09e-15	75.5
MS.gene28428.t1	AT3G48030	38.202	89	49	1	100	182	86	174	1.77e-15	73.9
MS.gene28428.t1	AT1G28040	42.667	75	42	1	106	179	221	295	2.35e-15	73.9
MS.gene28428.t1	AT5G05810	43.056	72	40	1	108	179	118	188	2.38e-15	74.7
MS.gene28428.t1	AT2G46494	29.197	137	88	2	52	179	222	358	2.53e-15	74.3
MS.gene28428.t1	AT2G35420	31.008	129	79	2	60	179	18	145	2.93e-15	72.8
MS.gene28428.t1	AT3G48030	38.202	89	49	1	100	182	164	252	3.41e-15	73.9
MS.gene28428.t1	AT5G10380	39.241	79	47	1	105	183	104	181	3.89e-15	73.2
MS.gene28428.t1	AT3G18930	37.069	116	56	5	110	214	120	229	6.90e-15	73.2
MS.gene28428.t1	AT3G18930	37.069	116	56	5	110	214	120	229	6.90e-15	73.2
MS.gene28428.t1	AT3G18930	37.069	116	56	5	110	214	120	229	6.90e-15	73.2
MS.gene28428.t1	AT1G33480	31.683	101	66	2	110	210	75	172	9.00e-15	71.6
MS.gene28428.t1	AT1G72220	57.778	45	19	0	135	179	175	219	1.13e-14	72.8
MS.gene28428.t1	AT4G17920	29.545	132	83	3	61	182	24	155	2.01e-14	71.2
MS.gene28428.t1	AT3G19140	37.255	102	61	2	80	180	23	122	2.35e-14	68.2
MS.gene28428.t1	AT2G34990	29.839	124	81	2	62	179	15	138	2.39e-14	70.9
MS.gene28428.t1	AT5G66070	44.000	75	39	2	108	182	150	221	2.41e-14	69.7
MS.gene28428.t1	AT5G66070	44.000	75	39	2	108	182	150	221	2.41e-14	69.7
MS.gene28428.t1	AT2G34990	29.839	124	81	2	62	179	37	160	2.50e-14	71.2
MS.gene28428.t1	AT2G35910	39.474	76	45	1	110	185	121	195	2.51e-14	69.7
MS.gene28428.t1	AT5G42200	39.189	74	44	1	106	179	74	146	3.72e-14	68.2
MS.gene28428.t1	AT1G32361	33.621	116	74	2	108	223	128	240	3.74e-14	70.9
MS.gene28428.t1	AT4G33565	52.941	51	24	0	135	185	215	265	4.19e-14	70.9
MS.gene28428.t1	AT5G66070	44.000	75	39	2	108	182	174	245	4.28e-14	69.7
MS.gene28428.t1	AT5G43420	27.273	143	80	3	61	179	38	180	4.62e-14	70.9
MS.gene28428.t1	AT5G06490	38.158	76	41	1	110	179	96	171	6.46e-14	68.2
MS.gene28428.t1	AT3G62690	32.258	155	87	5	37	179	7	155	6.74e-14	69.3
MS.gene28428.t1	AT4G10150	34.524	84	53	1	100	183	76	157	6.82e-14	68.9
MS.gene28428.t1	AT5G58580	35.354	99	62	1	85	183	88	184	6.95e-14	69.7
MS.gene28428.t1	AT2G46495	40.789	76	43	1	106	179	287	362	1.23e-13	69.3
MS.gene28428.t1	AT5G53110	39.437	71	42	1	110	179	302	372	1.26e-13	69.3
MS.gene28428.t1	AT2G46495	40.789	76	43	1	106	179	259	334	1.33e-13	69.3
MS.gene28428.t1	AT5G07040	29.508	122	81	3	63	180	17	137	1.78e-13	66.2
MS.gene28428.t1	AT3G11110	28.667	150	96	2	34	179	7	149	2.21e-13	65.9
MS.gene28428.t1	AT2G47560	30.496	141	87	4	44	179	16	150	2.99e-13	67.0
MS.gene28428.t1	AT2G46160	36.145	83	46	1	110	185	104	186	3.01e-13	66.6
MS.gene28428.t1	AT2G46160	36.145	83	46	1	110	185	104	186	3.01e-13	66.6
MS.gene28428.t1	AT5G36001	61.702	47	18	0	134	180	261	307	3.20e-13	68.2
MS.gene28428.t1	AT4G35840	29.299	157	86	4	48	182	83	236	5.38e-13	66.2
MS.gene28428.t1	AT5G40250	50.000	48	24	0	136	183	142	189	6.21e-13	67.4
MS.gene28428.t1	AT2G34000	37.333	75	44	1	109	180	60	134	6.92e-13	64.3
MS.gene28428.t1	AT2G18670	34.667	75	49	0	105	179	78	152	9.89e-13	64.7
MS.gene28428.t1	AT2G17730	38.158	76	45	1	107	180	164	239	2.09e-12	64.7
MS.gene28428.t1	AT2G42360	36.000	75	48	0	105	179	76	150	2.52e-12	64.7
MS.gene28428.t1	AT3G61550	33.333	93	52	2	103	185	92	184	3.69e-12	63.5
MS.gene28428.t1	AT4G26400	44.118	68	30	2	112	179	223	282	3.71e-12	65.1
MS.gene28428.t1	AT4G26400	44.118	68	30	2	112	179	223	282	3.71e-12	65.1
MS.gene28428.t1	AT2G42350	37.333	75	45	1	105	179	70	142	7.57e-12	62.8
MS.gene28428.t1	AT4G26580	37.037	81	45	2	107	182	254	333	1.26e-11	63.5
MS.gene28428.t1	AT4G26580	37.037	81	45	2	107	182	254	333	1.26e-11	63.5
MS.gene28428.t1	AT5G56340	44.118	68	30	2	112	179	241	300	1.29e-11	63.5
MS.gene28428.t1	AT5G46650	26.380	163	101	5	35	182	2	160	1.51e-11	62.8
MS.gene28428.t1	AT3G47990	54.000	50	22	1	130	179	171	219	2.64e-11	62.4
MS.gene28428.t1	AT3G47990	54.000	50	22	1	130	179	171	219	2.64e-11	62.4
MS.gene28428.t1	AT3G47990	54.000	50	22	1	130	179	171	219	2.64e-11	62.4
MS.gene28428.t1	AT3G47990	54.000	50	22	1	130	179	228	276	2.91e-11	62.4
MS.gene28428.t1	AT3G47990	54.000	50	22	1	130	179	212	260	3.22e-11	62.4
MS.gene28428.t1	AT1G53010	50.000	50	25	0	136	185	129	178	4.50e-11	60.1
MS.gene28428.t1	AT2G03000	51.064	47	22	1	136	182	480	525	4.69e-11	62.0

Find 49 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTCAACTAACTCGTATTT+TGG	0.157335	4.4:-8794637	MS.gene28428:CDS
TGAGTTGAAACTACCAAATT+TGG	0.175122	4.4:-8794395	MS.gene28428:CDS
ATTGATAATCAATTGGATTT+TGG	0.213343	4.4:+8794695	None:intergenic
TTTCTTCTTGATTCCTTTGT+TGG	0.230023	4.4:+8794453	None:intergenic
CAGTGCCGGAATCTATTATT+AGG	0.242669	4.4:-8794174	MS.gene28428:CDS
GTTGATGATGGCTACGTTTA+GGG	0.291505	4.4:+8794519	None:intergenic
ACACACTCTGTATCCAAATT+TGG	0.302122	4.4:+8794382	None:intergenic
CGTTGATGATGGCTACGTTT+AGG	0.307492	4.4:+8794518	None:intergenic
TGGAAACCATGATTGCATTT+AGG	0.379959	4.4:+8794313	None:intergenic
GAGACTTGTCGAAAGATTGT+TGG	0.388982	4.4:-8794223	MS.gene28428:CDS
CAGCAACTCTTCACCTCAAT+TGG	0.392775	4.4:-8794476	MS.gene28428:CDS
TTGCATTAAACTCCATTGTA+AGG	0.407407	4.4:-8794546	MS.gene28428:CDS
AAGGAGGCACTGTCTGCACT+TGG	0.408731	4.4:+8794246	None:intergenic
AGTTACATTCAAAAGCTTCA+TGG	0.410074	4.4:+8794137	None:intergenic
GTTGGTGATTGATAATCAAT+TGG	0.420758	4.4:+8794688	None:intergenic
TTGTGGTTGTGTGTGAGAAC+AGG	0.421574	4.4:+8794658	None:intergenic
GCCTCCTATGTTGCCAGTGC+CGG	0.430012	4.4:-8794188	MS.gene28428:CDS
AGCAAATAATAGCACACAAT+AGG	0.430929	4.4:+8794572	None:intergenic
ATGTTCGTTGCATCGACAAA+TGG	0.447158	4.4:-8794291	MS.gene28428:CDS
CTAATAATAGATTCCGGCAC+TGG	0.476860	4.4:+8794175	None:intergenic
AGAGTTCACAAAGGGTGAAA+AGG	0.489010	4.4:-8794347	MS.gene28428:CDS
GTGTGTGAGAACAGGGGAGC+TGG	0.495001	4.4:+8794666	None:intergenic
ATTCCTTTGTTGGCCAATTG+AGG	0.496903	4.4:+8794463	None:intergenic
TGAATCCTAATAATAGATTC+CGG	0.497786	4.4:+8794169	None:intergenic
AGGAGGCACTGTCTGCACTT+GGG	0.504991	4.4:+8794247	None:intergenic
GGAGGCACTGTCTGCACTTG+GGG	0.507612	4.4:+8794248	None:intergenic
GATTCCGGCACTGGCAACAT+AGG	0.508387	4.4:+8794184	None:intergenic
TTGTGGAATCTCACACAAGA+AGG	0.511006	4.4:-8794726	MS.gene28428:CDS
CGAAGAAGAGTCGTTGATGA+TGG	0.512398	4.4:+8794507	None:intergenic
AATACGAGTTAGTTGAATTG+TGG	0.518921	4.4:+8794641	None:intergenic
TTGTCGAAAGATTGTTGGAT+CGG	0.534154	4.4:-8794218	MS.gene28428:CDS
ACTTCTCCATGAGCTTCTTG+TGG	0.539026	4.4:-8794743	MS.gene28428:CDS
TGTGGTTGTGTGTGAGAACA+GGG	0.540709	4.4:+8794659	None:intergenic
ATTTGTCGATGCAACGAACA+TGG	0.562919	4.4:+8794293	None:intergenic
GGCACTGGCAACATAGGAGG+CGG	0.574365	4.4:+8794190	None:intergenic
GAGATTCCACAAGAAGCTCA+TGG	0.584576	4.4:+8794737	None:intergenic
TCACCTCAATTGGCCAACAA+AGG	0.584640	4.4:-8794466	MS.gene28428:CDS
TGTCTCTCAGAGTTCACAAA+GGG	0.586259	4.4:-8794355	MS.gene28428:CDS
TCCGGCACTGGCAACATAGG+AGG	0.592143	4.4:+8794187	None:intergenic
CAATCTTTCGACAAGTCTCA+AGG	0.597223	4.4:+8794227	None:intergenic
TCAAAAGCTTCATGGTCTAG+TGG	0.599238	4.4:+8794145	None:intergenic
ACAAGAAGCTCATGGAGAAG+TGG	0.600282	4.4:+8794745	None:intergenic
GTTTAGGGCACACCTTACAA+TGG	0.614051	4.4:+8794534	None:intergenic
TCAGTTGAGTAGCTCACTGT+GGG	0.618570	4.4:+8794415	None:intergenic
GTGAGAACAGGGGAGCTGGT+TGG	0.655380	4.4:+8794670	None:intergenic
CTCAGTTGAGTAGCTCACTG+TGG	0.674782	4.4:+8794414	None:intergenic
ATGTCTCTCAGAGTTCACAA+AGG	0.686490	4.4:-8794356	MS.gene28428:CDS
GTGGTTGTGTGTGAGAACAG+GGG	0.771294	4.4:+8794660	None:intergenic
TCTTTCGACAAGTCTCAAGG+AGG	0.776052	4.4:+8794230	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTGATAATCAATTGGATTT+TGG	+	chr4.4:8794197-8794216	None:intergenic	20.0%
!	TGAATCCTAATAATAGATTC+CGG	+	chr4.4:8794723-8794742	None:intergenic	25.0%
!!	AAGCTTTTGAATGTAACTAT+AGG	-	chr4.4:8794757-8794776	MS.gene28428:CDS	25.0%
!!	AATTCAACTAACTCGTATTT+TGG	-	chr4.4:8794252-8794271	MS.gene28428:CDS	25.0%
!!	AGCTTTTGAATGTAACTATA+GGG	-	chr4.4:8794758-8794777	MS.gene28428:CDS	25.0%
	AATACGAGTTAGTTGAATTG+TGG	+	chr4.4:8794251-8794270	None:intergenic	30.0%
	AGCAAATAATAGCACACAAT+AGG	+	chr4.4:8794320-8794339	None:intergenic	30.0%
	AGTTACATTCAAAAGCTTCA+TGG	+	chr4.4:8794755-8794774	None:intergenic	30.0%
	TTGCATTAAACTCCATTGTA+AGG	-	chr4.4:8794343-8794362	MS.gene28428:CDS	30.0%
	TTTCTTCTTGATTCCTTTGT+TGG	+	chr4.4:8794439-8794458	None:intergenic	30.0%
!	ATTTTGCCTAAATGCAATCA+TGG	-	chr4.4:8794570-8794589	MS.gene28428:CDS	30.0%
!	TGAGTTGAAACTACCAAATT+TGG	-	chr4.4:8794494-8794513	MS.gene28428:CDS	30.0%
!!	GTTGGTGATTGATAATCAAT+TGG	+	chr4.4:8794204-8794223	None:intergenic	30.0%
	ACACACTCTGTATCCAAATT+TGG	+	chr4.4:8794510-8794529	None:intergenic	35.0%
	TGGAAACCATGATTGCATTT+AGG	+	chr4.4:8794579-8794598	None:intergenic	35.0%
	TTGTCGAAAGATTGTTGGAT+CGG	-	chr4.4:8794671-8794690	MS.gene28428:CDS	35.0%
	AGAGTTCACAAAGGGTGAAA+AGG	-	chr4.4:8794542-8794561	MS.gene28428:CDS	40.0%
	ATGTCTCTCAGAGTTCACAA+AGG	-	chr4.4:8794533-8794552	MS.gene28428:CDS	40.0%
	ATTCCTTTGTTGGCCAATTG+AGG	+	chr4.4:8794429-8794448	None:intergenic	40.0%
	ATTTGTCGATGCAACGAACA+TGG	+	chr4.4:8794599-8794618	None:intergenic	40.0%
	CAATCTTTCGACAAGTCTCA+AGG	+	chr4.4:8794665-8794684	None:intergenic	40.0%
	CTAATAATAGATTCCGGCAC+TGG	+	chr4.4:8794717-8794736	None:intergenic	40.0%
	GAGACTTGTCGAAAGATTGT+TGG	-	chr4.4:8794666-8794685	MS.gene28428:CDS	40.0%
	TCAAAAGCTTCATGGTCTAG+TGG	+	chr4.4:8794747-8794766	None:intergenic	40.0%
	TGTCTCTCAGAGTTCACAAA+GGG	-	chr4.4:8794534-8794553	MS.gene28428:CDS	40.0%
	TTGTGGAATCTCACACAAGA+AGG	-	chr4.4:8794163-8794182	MS.gene28428:CDS	40.0%
!	ATGTTCGTTGCATCGACAAA+TGG	-	chr4.4:8794598-8794617	MS.gene28428:CDS	40.0%
!	CAGTGCCGGAATCTATTATT+AGG	-	chr4.4:8794715-8794734	MS.gene28428:CDS	40.0%
!!	GTTGATGATGGCTACGTTTA+GGG	+	chr4.4:8794373-8794392	None:intergenic	40.0%
	ACAAGAAGCTCATGGAGAAG+TGG	+	chr4.4:8794147-8794166	None:intergenic	45.0%
	ACTTCTCCATGAGCTTCTTG+TGG	-	chr4.4:8794146-8794165	MS.gene28428:CDS	45.0%
	CAGCAACTCTTCACCTCAAT+TGG	-	chr4.4:8794413-8794432	MS.gene28428:CDS	45.0%
	GAGATTCCACAAGAAGCTCA+TGG	+	chr4.4:8794155-8794174	None:intergenic	45.0%
	TCACCTCAATTGGCCAACAA+AGG	-	chr4.4:8794423-8794442	MS.gene28428:CDS	45.0%
	TCAGTTGAGTAGCTCACTGT+GGG	+	chr4.4:8794477-8794496	None:intergenic	45.0%
	TCTTTCGACAAGTCTCAAGG+AGG	+	chr4.4:8794662-8794681	None:intergenic	45.0%
	TGTGGTTGTGTGTGAGAACA+GGG	+	chr4.4:8794233-8794252	None:intergenic	45.0%
	TTGTGGTTGTGTGTGAGAAC+AGG	+	chr4.4:8794234-8794253	None:intergenic	45.0%
!	CGAAGAAGAGTCGTTGATGA+TGG	+	chr4.4:8794385-8794404	None:intergenic	45.0%
!	GTTTAGGGCACACCTTACAA+TGG	+	chr4.4:8794358-8794377	None:intergenic	45.0%
!!	CGTTGATGATGGCTACGTTT+AGG	+	chr4.4:8794374-8794393	None:intergenic	45.0%
	CTCAGTTGAGTAGCTCACTG+TGG	+	chr4.4:8794478-8794497	None:intergenic	50.0%
	GTGGTTGTGTGTGAGAACAG+GGG	+	chr4.4:8794232-8794251	None:intergenic	50.0%
!!	AAGGAGGCACTGTCTGCACT+TGG	+	chr4.4:8794646-8794665	None:intergenic	55.0%
!!	AGGAGGCACTGTCTGCACTT+GGG	+	chr4.4:8794645-8794664	None:intergenic	55.0%
!!	GATTCCGGCACTGGCAACAT+AGG	+	chr4.4:8794708-8794727	None:intergenic	55.0%
	GCCTCCTATGTTGCCAGTGC+CGG	-	chr4.4:8794701-8794720	MS.gene28428:CDS	60.0%
	GTGAGAACAGGGGAGCTGGT+TGG	+	chr4.4:8794222-8794241	None:intergenic	60.0%
	GTGTGTGAGAACAGGGGAGC+TGG	+	chr4.4:8794226-8794245	None:intergenic	60.0%
!!	GGAGGCACTGTCTGCACTTG+GGG	+	chr4.4:8794644-8794663	None:intergenic	60.0%
!!	GGCACTGGCAACATAGGAGG+CGG	+	chr4.4:8794702-8794721	None:intergenic	60.0%
!!	TCCGGCACTGGCAACATAGG+AGG	+	chr4.4:8794705-8794724	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	8794117	8794794	8794117	ID=MS.gene28428
chr4.4	mRNA	8794117	8794794	8794117	ID=MS.gene28428.t1;Parent=MS.gene28428
chr4.4	exon	8794117	8794794	8794117	ID=MS.gene28428.t1.exon1;Parent=MS.gene28428.t1
chr4.4	CDS	8794117	8794794	8794117	ID=cds.MS.gene28428.t1;Parent=MS.gene28428.t1

Gene Sequence

>MS.gene28428

ATGTATGCTTCTACTTCTTTTACTTCACCACTTCTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAAAATCCAATTGATTATCAATCACCAACCAGCTCCCCTGTTCTCACACACAACCACAATTCAACTAACTCGTATTTTGGTGCTCGTGAGTTTGAATCAAATGTTGTGATGATAGTTGCTGTCCTATTGTGTGCTATTATTTGCTCAATTGCATTAAACTCCATTGTAAGGTGTGCCCTAAACGTAGCCATCATCAACGACTCTTCTTCGAGTTCTAGCAGCAACTCTTCACCTCAATTGGCCAACAAAGGAATCAAGAAGAAAGCTCTCAAGACATTTCCCACAGTGAGCTACTCAACTGAGTTGAAACTACCAAATTTGGATACAGAGTGTGTGATATGTCTCTCAGAGTTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAATCATGGTTTCCATGTTCGTTGCATCGACAAATGGCTAAAAGCACATTCATCATGCCCCAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGATCGGAAGCACCGCCTCCTATGTTGCCAGTGCCGGAATCTATTATTAGGATTCAGCCACTAGACCATGAAGCTTTTGAATGTAACTATAGGGAAGAAAGCAGATAA

Protein sequence

>MS.gene28428.t1

MYASTSFTSPLLHELLVESHTRRLLFQNPIDYQSPTSSPVLTHNHNSTNSYFGAREFESNVVMIVAVLLCAIICSIALNSIVRCALNVAIINDSSSSSSSNSSPQLANKGIKKKALKTFPTVSYSTELKLPNLDTECVICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVGSEAPPPMLPVPESIIRIQPLDHEAFECNYREESR