Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28427.t1 | XP_003630207.1 | 88.1 | 227 | 17 | 1 | 1 | 227 | 1 | 217 | 3.50E-106 | 394.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28427.t1 | Q6NML0 | 46.3 | 214 | 94 | 5 | 21 | 226 | 23 | 223 | 2.5e-44 | 180.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28427.t1 | G7LD44 | 88.1 | 227 | 17 | 1 | 1 | 227 | 1 | 217 | 2.5e-106 | 394.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049320 | MS.gene28427 | -0.807697 | 4.45E-50 | -1.69E-46 |
| MS.gene04932 | MS.gene28427 | 0.84323 | 1.59E-58 | -1.69E-46 |
| MS.gene049549 | MS.gene28427 | 0.854126 | 1.52E-61 | -1.69E-46 |
| MS.gene049609 | MS.gene28427 | -0.818928 | 1.52E-52 | -1.69E-46 |
| MS.gene050095 | MS.gene28427 | 0.804166 | 2.46E-49 | -1.69E-46 |
| MS.gene050096 | MS.gene28427 | 0.82304 | 1.72E-53 | -1.69E-46 |
| MS.gene050647 | MS.gene28427 | 0.80153 | 8.62E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene28427 | -0.803146 | 4.01E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene28427 | -0.816374 | 5.72E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene28427 | -0.814568 | 1.44E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene28427 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene051131 | MS.gene28427 | 0.803286 | 3.75E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene28427 | 0.807474 | 4.97E-50 | -1.69E-46 |
| MS.gene051874 | MS.gene28427 | -0.811728 | 6.06E-51 | -1.69E-46 |
| MS.gene052211 | MS.gene28427 | 0.872535 | 2.95E-67 | -1.69E-46 |
| MS.gene052212 | MS.gene28427 | 0.814014 | 1.91E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene28427 | 0.842736 | 2.16E-58 | -1.69E-46 |
| MS.gene05244 | MS.gene28427 | 0.818462 | 1.94E-52 | -1.69E-46 |
| MS.gene052606 | MS.gene28427 | 0.810487 | 1.12E-50 | -1.69E-46 |
| MS.gene052702 | MS.gene28427 | 0.802562 | 5.29E-49 | -1.69E-46 |
| MS.gene052706 | MS.gene28427 | 0.801416 | 9.10E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene28427 | -0.808984 | 2.37E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene28427 | 0.833253 | 5.93E-56 | -1.69E-46 |
| MS.gene053420 | MS.gene28427 | 0.839144 | 1.89E-57 | -1.69E-46 |
| MS.gene053449 | MS.gene28427 | -0.811454 | 6.94E-51 | -1.69E-46 |
| MS.gene053479 | MS.gene28427 | -0.802215 | 6.24E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene28427 | -0.816893 | 4.37E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene28427 | -0.809829 | 1.56E-50 | -1.69E-46 |
| MS.gene053887 | MS.gene28427 | 0.827676 | 1.37E-54 | -1.69E-46 |
| MS.gene053916 | MS.gene28427 | -0.803104 | 4.09E-49 | -1.69E-46 |
| MS.gene054146 | MS.gene28427 | 0.864727 | 9.88E-65 | -1.69E-46 |
| MS.gene054181 | MS.gene28427 | 0.831106 | 2.01E-55 | -1.69E-46 |
| MS.gene054290 | MS.gene28427 | 0.807325 | 5.34E-50 | -1.69E-46 |
| MS.gene054421 | MS.gene28427 | 0.830478 | 2.87E-55 | -1.69E-46 |
| MS.gene054706 | MS.gene28427 | 0.817473 | 3.24E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene28427 | 0.834778 | 2.46E-56 | -1.69E-46 |
| MS.gene054884 | MS.gene28427 | 0.809593 | 1.75E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene28427 | -0.810137 | 1.34E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene28427 | 0.812562 | 3.98E-51 | -1.69E-46 |
| MS.gene055240 | MS.gene28427 | 0.829816 | 4.16E-55 | -1.69E-46 |
| MS.gene055289 | MS.gene28427 | -0.808993 | 2.36E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene28427 | -0.812258 | 4.64E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene28427 | -0.800207 | 1.61E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene28427 | -0.802328 | 5.91E-49 | -1.69E-46 |
| MS.gene056218 | MS.gene28427 | 0.821235 | 4.50E-53 | -1.69E-46 |
| MS.gene056224 | MS.gene28427 | 0.819139 | 1.36E-52 | -1.69E-46 |
| MS.gene056330 | MS.gene28427 | 0.829019 | 6.51E-55 | -1.69E-46 |
| MS.gene056359 | MS.gene28427 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene28427 | -0.806813 | 6.86E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene28427 | -0.807651 | 4.55E-50 | -1.69E-46 |
| MS.gene056590 | MS.gene28427 | 0.822575 | 2.20E-53 | -1.69E-46 |
| MS.gene056591 | MS.gene28427 | 0.823809 | 1.13E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene28427 | -0.802172 | 6.36E-49 | -1.69E-46 |
| MS.gene056748 | MS.gene28427 | 0.823356 | 1.45E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene28427 | 0.814437 | 1.54E-51 | -1.69E-46 |
| MS.gene056920 | MS.gene28427 | 0.84951 | 3.09E-60 | -1.69E-46 |
| MS.gene057261 | MS.gene28427 | 0.802585 | 5.23E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene28427 | -0.801709 | 7.92E-49 | -1.69E-46 |
| MS.gene057544 | MS.gene28427 | 0.823599 | 1.27E-53 | -1.69E-46 |
| MS.gene057547 | MS.gene28427 | 0.81484 | 1.26E-51 | -1.69E-46 |
| MS.gene057550 | MS.gene28427 | 0.80704 | 6.14E-50 | -1.69E-46 |
| MS.gene057768 | MS.gene28427 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene28427 | -0.81553 | 8.82E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene28427 | -0.808235 | 3.42E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene28427 | -0.80331 | 3.71E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene28427 | 0.846443 | 2.16E-59 | -1.69E-46 |
| MS.gene058838 | MS.gene28427 | -0.811639 | 6.33E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene28427 | -0.803953 | 2.72E-49 | -1.69E-46 |
| MS.gene05913 | MS.gene28427 | -0.803528 | 3.34E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene28427 | 0.806818 | 6.84E-50 | -1.69E-46 |
| MS.gene059402 | MS.gene28427 | 0.836044 | 1.18E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene28427 | -0.805879 | 1.08E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene28427 | -0.800915 | 1.15E-48 | -1.69E-46 |
| MS.gene059953 | MS.gene28427 | 0.833525 | 5.07E-56 | -1.69E-46 |
| MS.gene059955 | MS.gene28427 | 0.851643 | 7.76E-61 | -1.69E-46 |
| MS.gene060087 | MS.gene28427 | 0.836981 | 6.81E-57 | -1.69E-46 |
| MS.gene060372 | MS.gene28427 | -0.81624 | 6.12E-52 | -1.69E-46 |
| MS.gene060593 | MS.gene28427 | 0.82528 | 5.11E-54 | -1.69E-46 |
| MS.gene06077 | MS.gene28427 | -0.804117 | 2.52E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene28427 | -0.814755 | 1.31E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene28427 | -0.803708 | 3.06E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28427.t1 | MTR_8g092970 | 89.427 | 227 | 14 | 1 | 1 | 227 | 1 | 217 | 1.03e-139 | 390 |
| MS.gene28427.t1 | MTR_8g092840 | 83.186 | 226 | 37 | 1 | 1 | 226 | 1 | 225 | 1.65e-127 | 359 |
| MS.gene28427.t1 | MTR_8g092930 | 81.057 | 227 | 41 | 1 | 1 | 227 | 1 | 225 | 7.02e-126 | 355 |
| MS.gene28427.t1 | MTR_8g093010 | 80.349 | 229 | 33 | 5 | 1 | 227 | 1 | 219 | 5.31e-124 | 350 |
| MS.gene28427.t1 | MTR_8g092985 | 81.776 | 214 | 34 | 2 | 1 | 213 | 1 | 210 | 1.91e-117 | 333 |
| MS.gene28427.t1 | MTR_8g092990 | 82.456 | 228 | 38 | 2 | 1 | 227 | 1 | 227 | 4.79e-114 | 325 |
| MS.gene28427.t1 | MTR_8g092960 | 75.664 | 226 | 44 | 2 | 1 | 226 | 1 | 215 | 1.04e-112 | 322 |
| MS.gene28427.t1 | MTR_3g095560 | 61.966 | 234 | 75 | 4 | 1 | 227 | 1 | 227 | 4.95e-96 | 280 |
| MS.gene28427.t1 | MTR_3g094000 | 50.000 | 148 | 65 | 3 | 53 | 198 | 36 | 176 | 2.25e-43 | 144 |
| MS.gene28427.t1 | MTR_7g073200 | 48.611 | 144 | 65 | 3 | 45 | 187 | 18 | 153 | 9.26e-40 | 135 |
| MS.gene28427.t1 | MTR_5g024730 | 43.558 | 163 | 72 | 5 | 54 | 207 | 26 | 177 | 9.43e-36 | 126 |
| MS.gene28427.t1 | MTR_3g116000 | 47.143 | 140 | 66 | 4 | 58 | 195 | 26 | 159 | 1.68e-35 | 124 |
| MS.gene28427.t1 | MTR_8g073120 | 43.750 | 144 | 68 | 4 | 54 | 194 | 19 | 152 | 3.49e-32 | 116 |
| MS.gene28427.t1 | MTR_2g035800 | 37.419 | 155 | 84 | 3 | 30 | 184 | 4 | 145 | 2.88e-31 | 112 |
| MS.gene28427.t1 | MTR_4g094725 | 37.255 | 153 | 85 | 3 | 33 | 184 | 7 | 149 | 1.19e-29 | 108 |
| MS.gene28427.t1 | MTR_1g043410 | 30.102 | 196 | 116 | 7 | 30 | 216 | 11 | 194 | 2.46e-23 | 95.9 |
| MS.gene28427.t1 | MTR_7g113800 | 35.714 | 154 | 74 | 6 | 44 | 187 | 28 | 166 | 3.71e-21 | 90.5 |
| MS.gene28427.t1 | MTR_1g082550 | 33.562 | 146 | 90 | 3 | 44 | 187 | 33 | 173 | 1.23e-20 | 89.4 |
| MS.gene28427.t1 | MTR_3g110190 | 37.313 | 134 | 77 | 4 | 59 | 189 | 11 | 140 | 2.29e-20 | 88.2 |
| MS.gene28427.t1 | MTR_3g071300 | 32.192 | 146 | 92 | 2 | 44 | 186 | 10 | 151 | 2.55e-19 | 82.0 |
| MS.gene28427.t1 | MTR_8g023400 | 36.522 | 115 | 66 | 3 | 114 | 223 | 92 | 204 | 5.16e-19 | 84.3 |
| MS.gene28427.t1 | MTR_4g120270 | 45.205 | 73 | 37 | 1 | 111 | 183 | 77 | 146 | 5.54e-19 | 83.6 |
| MS.gene28427.t1 | MTR_6g087150 | 33.939 | 165 | 94 | 4 | 24 | 184 | 9 | 162 | 1.01e-18 | 84.0 |
| MS.gene28427.t1 | MTR_7g117540 | 46.667 | 75 | 38 | 1 | 115 | 189 | 77 | 149 | 1.76e-18 | 82.4 |
| MS.gene28427.t1 | MTR_5g064980 | 36.364 | 132 | 73 | 4 | 61 | 186 | 56 | 182 | 2.87e-18 | 82.8 |
| MS.gene28427.t1 | MTR_5g064990 | 29.143 | 175 | 116 | 5 | 52 | 221 | 55 | 226 | 3.68e-18 | 82.4 |
| MS.gene28427.t1 | MTR_1g100737 | 44.578 | 83 | 42 | 1 | 112 | 190 | 90 | 172 | 4.33e-18 | 79.3 |
| MS.gene28427.t1 | MTR_6g055030 | 42.857 | 84 | 46 | 1 | 102 | 183 | 85 | 168 | 8.20e-18 | 80.9 |
| MS.gene28427.t1 | MTR_3g099650 | 42.308 | 78 | 43 | 1 | 112 | 187 | 105 | 182 | 1.02e-17 | 81.3 |
| MS.gene28427.t1 | MTR_2g096350 | 62.500 | 48 | 18 | 0 | 136 | 183 | 130 | 177 | 1.44e-17 | 78.6 |
| MS.gene28427.t1 | MTR_4g063070 | 31.288 | 163 | 103 | 2 | 30 | 183 | 216 | 378 | 2.40e-17 | 80.1 |
| MS.gene28427.t1 | MTR_3g464780 | 40.404 | 99 | 49 | 2 | 92 | 187 | 87 | 178 | 2.70e-17 | 78.6 |
| MS.gene28427.t1 | MTR_2g436100 | 45.205 | 73 | 39 | 1 | 111 | 183 | 90 | 161 | 5.50e-17 | 78.2 |
| MS.gene28427.t1 | MTR_3g078450 | 35.714 | 112 | 69 | 2 | 92 | 202 | 54 | 163 | 9.85e-17 | 76.3 |
| MS.gene28427.t1 | MTR_7g116220 | 40.000 | 80 | 46 | 1 | 111 | 188 | 67 | 146 | 1.16e-16 | 75.1 |
| MS.gene28427.t1 | MTR_2g055790 | 33.333 | 123 | 72 | 2 | 65 | 187 | 34 | 146 | 1.19e-16 | 75.5 |
| MS.gene28427.t1 | MTR_5g066250 | 35.135 | 111 | 59 | 2 | 112 | 222 | 132 | 229 | 1.22e-16 | 78.2 |
| MS.gene28427.t1 | MTR_1g492830 | 40.789 | 76 | 45 | 0 | 113 | 188 | 60 | 135 | 1.29e-16 | 76.3 |
| MS.gene28427.t1 | MTR_5g082940 | 43.421 | 76 | 42 | 1 | 112 | 186 | 73 | 148 | 1.39e-16 | 74.7 |
| MS.gene28427.t1 | MTR_4g030070 | 36.364 | 88 | 54 | 1 | 104 | 191 | 75 | 160 | 1.69e-16 | 75.9 |
| MS.gene28427.t1 | MTR_5g071930 | 42.553 | 94 | 48 | 3 | 113 | 206 | 65 | 152 | 2.21e-16 | 74.7 |
| MS.gene28427.t1 | MTR_8g066780 | 30.198 | 202 | 111 | 7 | 26 | 219 | 44 | 223 | 2.97e-16 | 77.0 |
| MS.gene28427.t1 | MTR_3g100400 | 44.444 | 72 | 39 | 1 | 112 | 183 | 128 | 198 | 3.75e-16 | 77.0 |
| MS.gene28427.t1 | MTR_4g129420 | 41.772 | 79 | 46 | 0 | 109 | 187 | 112 | 190 | 4.06e-16 | 77.0 |
| MS.gene28427.t1 | MTR_5g064890 | 31.034 | 116 | 78 | 2 | 73 | 187 | 86 | 200 | 5.05e-16 | 76.3 |
| MS.gene28427.t1 | MTR_7g076250 | 40.278 | 72 | 43 | 0 | 112 | 183 | 61 | 132 | 7.70e-16 | 73.2 |
| MS.gene28427.t1 | MTR_7g108855 | 38.043 | 92 | 48 | 2 | 115 | 197 | 67 | 158 | 9.26e-16 | 73.2 |
| MS.gene28427.t1 | MTR_3g086700 | 41.250 | 80 | 45 | 1 | 109 | 186 | 41 | 120 | 9.29e-16 | 73.2 |
| MS.gene28427.t1 | MTR_8g089880 | 38.750 | 80 | 48 | 1 | 114 | 193 | 127 | 205 | 1.16e-15 | 74.3 |
| MS.gene28427.t1 | MTR_1g070140 | 41.026 | 78 | 44 | 2 | 107 | 183 | 96 | 172 | 1.64e-15 | 74.7 |
| MS.gene28427.t1 | MTR_4g056590 | 37.079 | 89 | 49 | 3 | 111 | 199 | 97 | 178 | 1.67e-15 | 72.4 |
| MS.gene28427.t1 | MTR_3g086730 | 41.250 | 80 | 45 | 1 | 109 | 186 | 41 | 120 | 1.77e-15 | 73.2 |
| MS.gene28427.t1 | MTR_4g093830 | 34.259 | 108 | 60 | 2 | 114 | 221 | 126 | 222 | 1.86e-15 | 74.7 |
| MS.gene28427.t1 | MTR_5g026730 | 28.659 | 164 | 108 | 5 | 49 | 208 | 2 | 160 | 3.15e-15 | 71.2 |
| MS.gene28427.t1 | MTR_8g074900 | 33.645 | 107 | 59 | 2 | 87 | 186 | 124 | 225 | 3.62e-15 | 72.0 |
| MS.gene28427.t1 | MTR_5g030010 | 27.778 | 180 | 112 | 5 | 61 | 223 | 59 | 237 | 3.74e-15 | 73.9 |
| MS.gene28427.t1 | MTR_1g074190 | 37.363 | 91 | 52 | 1 | 106 | 191 | 91 | 181 | 4.18e-15 | 73.6 |
| MS.gene28427.t1 | MTR_6g007737 | 31.111 | 135 | 83 | 3 | 61 | 186 | 71 | 204 | 5.20e-15 | 73.6 |
| MS.gene28427.t1 | MTR_3g114500 | 33.058 | 121 | 73 | 3 | 63 | 183 | 1 | 113 | 6.13e-15 | 69.3 |
| MS.gene28427.t1 | MTR_3g078470 | 35.000 | 100 | 62 | 2 | 88 | 186 | 52 | 149 | 6.85e-15 | 71.2 |
| MS.gene28427.t1 | MTR_2g009310 | 44.286 | 70 | 38 | 1 | 114 | 183 | 135 | 203 | 7.94e-15 | 72.8 |
| MS.gene28427.t1 | MTR_5g034790 | 41.558 | 77 | 44 | 1 | 110 | 186 | 112 | 187 | 1.33e-14 | 72.4 |
| MS.gene28427.t1 | MTR_2g090950 | 32.653 | 98 | 61 | 1 | 91 | 183 | 68 | 165 | 1.69e-14 | 70.5 |
| MS.gene28427.t1 | MTR_8g099495 | 40.260 | 77 | 45 | 1 | 108 | 183 | 313 | 389 | 2.41e-14 | 71.6 |
| MS.gene28427.t1 | MTR_5g009190 | 40.000 | 80 | 47 | 1 | 105 | 183 | 257 | 336 | 2.41e-14 | 71.2 |
| MS.gene28427.t1 | MTR_5g009210 | 40.000 | 80 | 47 | 1 | 105 | 183 | 278 | 357 | 3.38e-14 | 70.9 |
| MS.gene28427.t1 | MTR_5g022920 | 39.474 | 76 | 45 | 1 | 112 | 186 | 159 | 234 | 3.86e-14 | 69.7 |
| MS.gene28427.t1 | MTR_8g032690 | 40.580 | 69 | 38 | 1 | 141 | 209 | 19 | 84 | 4.61e-14 | 66.6 |
| MS.gene28427.t1 | MTR_8g063660 | 39.241 | 79 | 47 | 1 | 110 | 188 | 64 | 141 | 4.63e-14 | 70.5 |
| MS.gene28427.t1 | MTR_7g116180 | 40.260 | 77 | 42 | 2 | 113 | 186 | 66 | 141 | 5.14e-14 | 68.2 |
| MS.gene28427.t1 | MTR_2g090905 | 40.260 | 77 | 41 | 1 | 112 | 183 | 37 | 113 | 5.39e-14 | 66.6 |
| MS.gene28427.t1 | MTR_6g007680 | 43.662 | 71 | 39 | 1 | 113 | 183 | 39 | 108 | 7.04e-14 | 67.0 |
| MS.gene28427.t1 | MTR_8g028465 | 41.429 | 70 | 38 | 1 | 114 | 183 | 90 | 156 | 7.83e-14 | 68.2 |
| MS.gene28427.t1 | MTR_5g076990 | 45.333 | 75 | 38 | 1 | 112 | 183 | 74 | 148 | 8.86e-14 | 69.3 |
| MS.gene28427.t1 | MTR_3g012550 | 26.119 | 134 | 95 | 2 | 51 | 183 | 20 | 150 | 9.73e-14 | 67.4 |
| MS.gene28427.t1 | MTR_1g070425 | 40.260 | 77 | 42 | 2 | 113 | 186 | 67 | 142 | 1.01e-13 | 67.4 |
| MS.gene28427.t1 | MTR_4g106680 | 28.030 | 132 | 85 | 2 | 61 | 183 | 44 | 174 | 1.04e-13 | 69.3 |
| MS.gene28427.t1 | MTR_1g056350 | 33.333 | 96 | 60 | 2 | 110 | 202 | 70 | 164 | 1.27e-13 | 67.0 |
| MS.gene28427.t1 | MTR_5g009200 | 32.258 | 124 | 78 | 2 | 61 | 183 | 274 | 392 | 1.50e-13 | 69.3 |
| MS.gene28427.t1 | MTR_5g026720 | 55.814 | 43 | 19 | 0 | 141 | 183 | 93 | 135 | 1.62e-13 | 66.2 |
| MS.gene28427.t1 | MTR_1g026070 | 36.486 | 74 | 43 | 1 | 110 | 183 | 44 | 113 | 2.12e-13 | 65.5 |
| MS.gene28427.t1 | MTR_6g007670 | 40.260 | 77 | 41 | 2 | 110 | 183 | 1 | 75 | 2.22e-13 | 67.8 |
| MS.gene28427.t1 | MTR_6g007670 | 48.611 | 72 | 35 | 2 | 113 | 183 | 144 | 214 | 1.32e-12 | 65.5 |
| MS.gene28427.t1 | MTR_3g091620 | 31.200 | 125 | 69 | 4 | 111 | 223 | 98 | 217 | 2.22e-13 | 68.6 |
| MS.gene28427.t1 | MTR_5g092790 | 43.836 | 73 | 38 | 2 | 113 | 183 | 156 | 227 | 2.42e-13 | 67.4 |
| MS.gene28427.t1 | MTR_2g041200 | 45.161 | 62 | 34 | 0 | 122 | 183 | 90 | 151 | 2.78e-13 | 66.2 |
| MS.gene28427.t1 | MTR_7g079290 | 32.941 | 85 | 52 | 2 | 113 | 193 | 124 | 207 | 6.06e-13 | 65.9 |
| MS.gene28427.t1 | MTR_8g099515 | 44.444 | 72 | 37 | 2 | 114 | 183 | 309 | 379 | 7.05e-13 | 67.4 |
| MS.gene28427.t1 | MTR_4g108830 | 36.449 | 107 | 49 | 2 | 86 | 184 | 122 | 217 | 9.67e-13 | 65.5 |
| MS.gene28427.t1 | MTR_8g071815 | 53.333 | 45 | 21 | 0 | 139 | 183 | 88 | 132 | 1.16e-12 | 64.3 |
| MS.gene28427.t1 | MTR_7g059360 | 45.614 | 57 | 31 | 0 | 128 | 184 | 145 | 201 | 1.62e-12 | 65.1 |
| MS.gene28427.t1 | MTR_3g087900 | 44.444 | 72 | 35 | 3 | 117 | 187 | 48 | 115 | 2.26e-12 | 63.2 |
| MS.gene28427.t1 | MTR_3g091200 | 38.028 | 71 | 43 | 1 | 114 | 183 | 303 | 373 | 2.47e-12 | 65.9 |
| MS.gene28427.t1 | MTR_5g092750 | 45.205 | 73 | 37 | 2 | 113 | 183 | 156 | 227 | 2.62e-12 | 64.3 |
| MS.gene28427.t1 | MTR_7g079280 | 36.364 | 77 | 48 | 1 | 114 | 189 | 80 | 156 | 2.69e-12 | 63.5 |
| MS.gene28427.t1 | MTR_4g108830 | 40.698 | 86 | 40 | 1 | 99 | 184 | 115 | 189 | 3.00e-12 | 63.5 |
| MS.gene28427.t1 | MTR_3g078120 | 33.333 | 126 | 81 | 3 | 61 | 183 | 2 | 127 | 3.08e-12 | 62.8 |
| MS.gene28427.t1 | MTR_8g066740 | 41.892 | 74 | 40 | 1 | 113 | 183 | 75 | 148 | 6.78e-12 | 63.9 |
| MS.gene28427.t1 | MTR_1g090480 | 32.000 | 125 | 77 | 3 | 71 | 189 | 28 | 150 | 7.64e-12 | 62.0 |
| MS.gene28427.t1 | MTR_4g116460 | 41.096 | 73 | 33 | 4 | 117 | 183 | 415 | 483 | 1.15e-11 | 63.9 |
| MS.gene28427.t1 | MTR_4g116460 | 41.096 | 73 | 33 | 4 | 117 | 183 | 458 | 526 | 1.25e-11 | 63.9 |
| MS.gene28427.t1 | MTR_3g081030 | 32.673 | 101 | 64 | 2 | 93 | 193 | 75 | 171 | 1.48e-11 | 62.0 |
| MS.gene28427.t1 | MTR_7g096690 | 26.667 | 135 | 81 | 4 | 61 | 183 | 14 | 142 | 2.13e-11 | 62.8 |
| MS.gene28427.t1 | MTR_6g055030 | 56.098 | 41 | 18 | 0 | 143 | 183 | 97 | 137 | 2.50e-11 | 62.4 |
| MS.gene28427.t1 | MTR_7g116200 | 38.028 | 71 | 42 | 1 | 113 | 183 | 67 | 135 | 2.54e-11 | 60.5 |
| MS.gene28427.t1 | MTR_2g079320 | 36.250 | 80 | 46 | 1 | 112 | 186 | 125 | 204 | 4.01e-11 | 60.8 |
| MS.gene28427.t1 | MTR_4g022410 | 59.091 | 44 | 18 | 0 | 140 | 183 | 112 | 155 | 4.84e-11 | 60.1 |
| MS.gene28427.t1 | MTR_8g019710 | 54.545 | 44 | 20 | 0 | 140 | 183 | 53 | 96 | 5.12e-11 | 58.9 |
| MS.gene28427.t1 | MTR_7g117350 | 34.667 | 75 | 44 | 1 | 114 | 183 | 290 | 364 | 5.70e-11 | 61.6 |
| MS.gene28427.t1 | MTR_7g117350 | 34.667 | 75 | 44 | 1 | 114 | 183 | 282 | 356 | 6.09e-11 | 61.6 |
| MS.gene28427.t1 | MTR_8g009190 | 50.000 | 48 | 24 | 0 | 140 | 187 | 104 | 151 | 6.79e-11 | 61.2 |
| MS.gene28427.t1 | MTR_2g044570 | 42.593 | 54 | 31 | 0 | 140 | 193 | 82 | 135 | 7.59e-11 | 60.8 |
| MS.gene28427.t1 | MTR_1g096780 | 37.500 | 72 | 43 | 2 | 114 | 184 | 208 | 278 | 8.33e-11 | 61.2 |
| MS.gene28427.t1 | MTR_3g078540 | 41.270 | 63 | 36 | 1 | 128 | 189 | 66 | 128 | 9.85e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28427.t1 | AT1G49230 | 48.402 | 219 | 93 | 3 | 11 | 225 | 17 | 219 | 2.08e-65 | 202 |
| MS.gene28427.t1 | AT1G49220 | 48.402 | 219 | 90 | 6 | 11 | 220 | 13 | 217 | 1.41e-62 | 196 |
| MS.gene28427.t1 | AT1G49200 | 44.828 | 232 | 105 | 6 | 4 | 226 | 7 | 224 | 7.36e-60 | 188 |
| MS.gene28427.t1 | AT1G49210 | 47.664 | 214 | 91 | 5 | 21 | 226 | 23 | 223 | 9.59e-59 | 185 |
| MS.gene28427.t1 | AT3G18773 | 43.111 | 225 | 110 | 5 | 6 | 226 | 8 | 218 | 4.53e-54 | 173 |
| MS.gene28427.t1 | AT5G05280 | 48.684 | 152 | 70 | 2 | 46 | 197 | 26 | 169 | 8.95e-45 | 148 |
| MS.gene28427.t1 | AT3G10910 | 50.376 | 133 | 63 | 3 | 57 | 187 | 29 | 160 | 1.82e-40 | 137 |
| MS.gene28427.t1 | AT1G20823 | 42.604 | 169 | 79 | 5 | 23 | 187 | 3 | 157 | 7.45e-38 | 130 |
| MS.gene28427.t1 | AT1G76410 | 42.077 | 183 | 97 | 4 | 41 | 220 | 8 | 184 | 8.36e-38 | 130 |
| MS.gene28427.t1 | AT5G01880 | 48.592 | 142 | 60 | 4 | 57 | 197 | 30 | 159 | 2.47e-30 | 110 |
| MS.gene28427.t1 | AT4G17245 | 40.458 | 131 | 62 | 2 | 54 | 183 | 30 | 145 | 1.30e-28 | 106 |
| MS.gene28427.t1 | AT2G17450 | 39.259 | 135 | 64 | 2 | 58 | 186 | 25 | 147 | 3.65e-28 | 105 |
| MS.gene28427.t1 | AT5G47610 | 37.681 | 138 | 66 | 2 | 46 | 183 | 32 | 149 | 5.14e-27 | 102 |
| MS.gene28427.t1 | AT4G35480 | 37.500 | 152 | 73 | 5 | 58 | 194 | 23 | 167 | 1.21e-25 | 99.4 |
| MS.gene28427.t1 | AT1G72200 | 32.184 | 174 | 94 | 6 | 45 | 213 | 47 | 201 | 9.28e-22 | 92.8 |
| MS.gene28427.t1 | AT3G05200 | 30.088 | 226 | 120 | 7 | 24 | 222 | 18 | 232 | 1.13e-21 | 92.4 |
| MS.gene28427.t1 | AT4G40070 | 34.810 | 158 | 92 | 4 | 64 | 216 | 49 | 200 | 1.04e-20 | 89.0 |
| MS.gene28427.t1 | AT1G23980 | 34.682 | 173 | 92 | 8 | 34 | 187 | 20 | 190 | 8.41e-19 | 84.3 |
| MS.gene28427.t1 | AT4G09120 | 36.508 | 126 | 69 | 3 | 64 | 186 | 51 | 168 | 9.90e-19 | 83.6 |
| MS.gene28427.t1 | AT1G72310 | 48.718 | 78 | 38 | 1 | 110 | 187 | 98 | 173 | 4.18e-18 | 81.6 |
| MS.gene28427.t1 | AT3G16720 | 36.697 | 109 | 62 | 4 | 110 | 214 | 90 | 195 | 5.27e-18 | 81.3 |
| MS.gene28427.t1 | AT1G53820 | 40.860 | 93 | 50 | 3 | 110 | 200 | 91 | 180 | 7.99e-18 | 80.9 |
| MS.gene28427.t1 | AT2G46494 | 31.387 | 137 | 89 | 2 | 52 | 183 | 222 | 358 | 1.27e-17 | 80.9 |
| MS.gene28427.t1 | AT2G20030 | 48.571 | 70 | 35 | 1 | 114 | 183 | 98 | 166 | 1.32e-17 | 80.9 |
| MS.gene28427.t1 | AT2G35000 | 34.074 | 135 | 82 | 4 | 58 | 187 | 49 | 181 | 1.40e-17 | 80.9 |
| MS.gene28427.t1 | AT4G17905 | 34.783 | 138 | 73 | 4 | 61 | 183 | 62 | 197 | 1.60e-17 | 80.1 |
| MS.gene28427.t1 | AT4G09110 | 34.426 | 122 | 71 | 3 | 64 | 183 | 51 | 165 | 1.70e-17 | 79.7 |
| MS.gene28427.t1 | AT1G35330 | 33.077 | 130 | 79 | 4 | 64 | 186 | 46 | 174 | 1.77e-17 | 80.1 |
| MS.gene28427.t1 | AT4G17905 | 34.783 | 138 | 73 | 4 | 61 | 183 | 88 | 223 | 2.12e-17 | 80.1 |
| MS.gene28427.t1 | AT3G14320 | 47.887 | 71 | 35 | 1 | 114 | 184 | 63 | 131 | 2.17e-17 | 77.8 |
| MS.gene28427.t1 | AT4G15975 | 38.462 | 91 | 54 | 1 | 96 | 186 | 33 | 121 | 2.54e-17 | 78.2 |
| MS.gene28427.t1 | AT1G22500 | 32.847 | 137 | 87 | 2 | 53 | 187 | 31 | 164 | 2.78e-17 | 80.1 |
| MS.gene28427.t1 | AT4G17920 | 31.818 | 132 | 84 | 3 | 61 | 186 | 24 | 155 | 5.94e-17 | 78.2 |
| MS.gene28427.t1 | AT5G27420 | 45.000 | 80 | 42 | 1 | 111 | 188 | 92 | 171 | 6.21e-17 | 79.0 |
| MS.gene28427.t1 | AT4G09130 | 46.154 | 78 | 40 | 1 | 111 | 186 | 88 | 165 | 7.86e-17 | 78.6 |
| MS.gene28427.t1 | AT4G28890 | 45.714 | 70 | 37 | 1 | 114 | 183 | 97 | 165 | 1.16e-16 | 78.6 |
| MS.gene28427.t1 | AT5G57750 | 29.365 | 126 | 87 | 1 | 61 | 184 | 40 | 165 | 1.36e-16 | 75.9 |
| MS.gene28427.t1 | AT5G05810 | 45.833 | 72 | 38 | 1 | 112 | 183 | 118 | 188 | 1.58e-16 | 78.2 |
| MS.gene28427.t1 | AT2G18650 | 43.590 | 78 | 44 | 0 | 110 | 187 | 95 | 172 | 1.59e-16 | 78.2 |
| MS.gene28427.t1 | AT1G04360 | 31.061 | 132 | 82 | 2 | 61 | 183 | 45 | 176 | 1.67e-16 | 77.8 |
| MS.gene28427.t1 | AT3G03550 | 62.500 | 48 | 18 | 0 | 140 | 187 | 158 | 205 | 2.41e-16 | 77.0 |
| MS.gene28427.t1 | AT4G30400 | 41.333 | 75 | 44 | 0 | 109 | 183 | 102 | 176 | 2.68e-16 | 77.4 |
| MS.gene28427.t1 | AT1G74410 | 36.634 | 101 | 56 | 2 | 86 | 186 | 129 | 221 | 2.81e-16 | 75.1 |
| MS.gene28427.t1 | AT1G28040 | 36.449 | 107 | 60 | 3 | 85 | 183 | 189 | 295 | 3.81e-16 | 75.9 |
| MS.gene28427.t1 | AT3G62690 | 30.270 | 185 | 114 | 4 | 37 | 216 | 7 | 181 | 4.67e-16 | 75.1 |
| MS.gene28427.t1 | AT4G10160 | 32.000 | 125 | 80 | 2 | 63 | 187 | 24 | 143 | 5.87e-16 | 74.3 |
| MS.gene28427.t1 | AT5G17600 | 46.575 | 73 | 36 | 2 | 112 | 183 | 114 | 184 | 6.07e-16 | 76.3 |
| MS.gene28427.t1 | AT2G25410 | 31.765 | 170 | 105 | 5 | 18 | 183 | 207 | 369 | 7.59e-16 | 75.9 |
| MS.gene28427.t1 | AT4G09100 | 39.241 | 79 | 46 | 2 | 107 | 183 | 49 | 127 | 1.20e-15 | 71.2 |
| MS.gene28427.t1 | AT5G43420 | 30.556 | 144 | 78 | 3 | 61 | 183 | 38 | 180 | 1.42e-15 | 75.1 |
| MS.gene28427.t1 | AT2G34990 | 33.588 | 131 | 78 | 5 | 58 | 183 | 12 | 138 | 1.61e-15 | 74.3 |
| MS.gene28427.t1 | AT2G34990 | 33.588 | 131 | 78 | 5 | 58 | 183 | 34 | 160 | 1.69e-15 | 74.3 |
| MS.gene28427.t1 | AT5G06490 | 28.659 | 164 | 102 | 3 | 35 | 183 | 8 | 171 | 2.20e-15 | 72.4 |
| MS.gene28427.t1 | AT2G47560 | 34.752 | 141 | 85 | 3 | 44 | 183 | 16 | 150 | 3.32e-15 | 72.4 |
| MS.gene28427.t1 | AT3G19140 | 37.143 | 105 | 61 | 2 | 80 | 184 | 23 | 122 | 3.49e-15 | 70.5 |
| MS.gene28427.t1 | AT2G27940 | 34.483 | 87 | 55 | 1 | 108 | 194 | 109 | 193 | 4.26e-15 | 72.4 |
| MS.gene28427.t1 | AT5G66070 | 36.275 | 102 | 57 | 3 | 90 | 186 | 147 | 245 | 5.32e-15 | 72.0 |
| MS.gene28427.t1 | AT5G66070 | 42.105 | 76 | 41 | 2 | 111 | 186 | 149 | 221 | 5.92e-15 | 71.6 |
| MS.gene28427.t1 | AT5G66070 | 42.105 | 76 | 41 | 2 | 111 | 186 | 149 | 221 | 5.92e-15 | 71.6 |
| MS.gene28427.t1 | AT1G32361 | 37.500 | 104 | 60 | 3 | 83 | 186 | 101 | 199 | 8.01e-15 | 72.8 |
| MS.gene28427.t1 | AT1G72220 | 28.667 | 150 | 93 | 4 | 64 | 200 | 92 | 240 | 8.94e-15 | 72.8 |
| MS.gene28427.t1 | AT2G46493 | 40.000 | 75 | 44 | 1 | 110 | 183 | 106 | 180 | 1.41e-14 | 69.7 |
| MS.gene28427.t1 | AT4G10150 | 36.145 | 83 | 51 | 1 | 105 | 187 | 77 | 157 | 2.67e-14 | 70.1 |
| MS.gene28427.t1 | AT3G48030 | 37.778 | 90 | 44 | 3 | 106 | 186 | 88 | 174 | 2.71e-14 | 70.5 |
| MS.gene28427.t1 | AT2G35910 | 37.079 | 89 | 55 | 1 | 114 | 202 | 121 | 208 | 2.71e-14 | 69.7 |
| MS.gene28427.t1 | AT5G42200 | 39.189 | 74 | 44 | 1 | 110 | 183 | 74 | 146 | 3.30e-14 | 68.2 |
| MS.gene28427.t1 | AT3G48030 | 37.778 | 90 | 44 | 3 | 106 | 186 | 166 | 252 | 3.76e-14 | 70.9 |
| MS.gene28427.t1 | AT2G46495 | 40.789 | 76 | 43 | 1 | 110 | 183 | 259 | 334 | 4.58e-14 | 70.5 |
| MS.gene28427.t1 | AT2G46495 | 40.789 | 76 | 43 | 1 | 110 | 183 | 287 | 362 | 4.62e-14 | 70.9 |
| MS.gene28427.t1 | AT5G53110 | 34.146 | 123 | 73 | 4 | 62 | 183 | 257 | 372 | 5.27e-14 | 70.5 |
| MS.gene28427.t1 | AT4G33565 | 44.286 | 70 | 37 | 1 | 140 | 207 | 216 | 285 | 5.99e-14 | 70.5 |
| MS.gene28427.t1 | AT1G35630 | 37.755 | 98 | 59 | 2 | 117 | 213 | 209 | 305 | 6.32e-14 | 70.1 |
| MS.gene28427.t1 | AT2G46160 | 37.349 | 83 | 45 | 1 | 114 | 189 | 104 | 186 | 9.37e-14 | 68.2 |
| MS.gene28427.t1 | AT2G46160 | 37.349 | 83 | 45 | 1 | 114 | 189 | 104 | 186 | 9.37e-14 | 68.2 |
| MS.gene28427.t1 | AT1G35625 | 27.517 | 149 | 101 | 3 | 66 | 213 | 163 | 305 | 1.02e-13 | 69.3 |
| MS.gene28427.t1 | AT1G33480 | 31.532 | 111 | 71 | 3 | 105 | 214 | 66 | 172 | 1.14e-13 | 68.6 |
| MS.gene28427.t1 | AT3G18930 | 37.209 | 86 | 45 | 2 | 114 | 190 | 120 | 205 | 1.38e-13 | 69.3 |
| MS.gene28427.t1 | AT3G18930 | 37.209 | 86 | 45 | 2 | 114 | 190 | 120 | 205 | 1.38e-13 | 69.3 |
| MS.gene28427.t1 | AT3G18930 | 37.209 | 86 | 45 | 2 | 114 | 190 | 120 | 205 | 1.38e-13 | 69.3 |
| MS.gene28427.t1 | AT5G10380 | 37.975 | 79 | 48 | 1 | 109 | 187 | 104 | 181 | 1.40e-13 | 68.9 |
| MS.gene28427.t1 | AT5G58580 | 40.789 | 76 | 45 | 0 | 112 | 187 | 109 | 184 | 1.43e-13 | 68.9 |
| MS.gene28427.t1 | AT5G07040 | 25.658 | 152 | 96 | 3 | 33 | 183 | 1 | 136 | 1.53e-13 | 66.6 |
| MS.gene28427.t1 | AT2G35420 | 40.278 | 72 | 42 | 1 | 112 | 183 | 75 | 145 | 1.58e-13 | 68.2 |
| MS.gene28427.t1 | AT5G40250 | 26.897 | 145 | 88 | 3 | 61 | 187 | 45 | 189 | 1.58e-13 | 69.3 |
| MS.gene28427.t1 | AT2G34000 | 32.520 | 123 | 78 | 2 | 67 | 184 | 12 | 134 | 2.04e-13 | 65.9 |
| MS.gene28427.t1 | AT4G35840 | 38.667 | 75 | 44 | 1 | 112 | 184 | 160 | 234 | 2.71e-13 | 67.4 |
| MS.gene28427.t1 | AT2G17730 | 29.091 | 110 | 69 | 2 | 77 | 184 | 137 | 239 | 4.14e-13 | 67.0 |
| MS.gene28427.t1 | AT5G46650 | 28.889 | 135 | 87 | 3 | 61 | 186 | 26 | 160 | 4.17e-13 | 67.4 |
| MS.gene28427.t1 | AT2G42360 | 29.167 | 144 | 97 | 2 | 41 | 183 | 11 | 150 | 5.30e-13 | 66.6 |
| MS.gene28427.t1 | AT3G61550 | 31.250 | 112 | 62 | 2 | 88 | 189 | 78 | 184 | 5.89e-13 | 65.9 |
| MS.gene28427.t1 | AT3G11110 | 37.349 | 83 | 52 | 0 | 101 | 183 | 67 | 149 | 2.18e-12 | 63.2 |
| MS.gene28427.t1 | AT4G26400 | 45.588 | 68 | 29 | 2 | 116 | 183 | 223 | 282 | 2.32e-12 | 65.9 |
| MS.gene28427.t1 | AT4G26400 | 45.588 | 68 | 29 | 2 | 116 | 183 | 223 | 282 | 2.32e-12 | 65.9 |
| MS.gene28427.t1 | AT2G18670 | 34.667 | 75 | 49 | 0 | 109 | 183 | 78 | 152 | 2.55e-12 | 63.5 |
| MS.gene28427.t1 | AT5G36001 | 58.696 | 46 | 19 | 0 | 138 | 183 | 261 | 306 | 3.61e-12 | 65.1 |
| MS.gene28427.t1 | AT2G37580 | 37.179 | 78 | 44 | 1 | 106 | 183 | 112 | 184 | 3.92e-12 | 63.9 |
| MS.gene28427.t1 | AT5G52150 | 37.755 | 98 | 51 | 4 | 86 | 176 | 104 | 198 | 2.43e-11 | 61.2 |
| MS.gene28427.t1 | AT1G53010 | 50.000 | 50 | 25 | 0 | 140 | 189 | 129 | 178 | 2.53e-11 | 60.8 |
| MS.gene28427.t1 | AT2G42350 | 38.028 | 71 | 42 | 1 | 113 | 183 | 74 | 142 | 3.09e-11 | 61.2 |
| MS.gene28427.t1 | AT3G20395 | 35.165 | 91 | 56 | 1 | 96 | 186 | 129 | 216 | 3.67e-11 | 61.2 |
| MS.gene28427.t1 | AT1G22670 | 36.111 | 72 | 44 | 2 | 114 | 184 | 205 | 275 | 4.90e-11 | 62.0 |
| MS.gene28427.t1 | AT4G09560 | 40.845 | 71 | 40 | 2 | 115 | 184 | 208 | 277 | 5.99e-11 | 62.0 |
| MS.gene28427.t1 | AT1G71980 | 31.111 | 90 | 60 | 2 | 114 | 202 | 205 | 293 | 8.16e-11 | 61.6 |
Find 44 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAACAGACTCAAATTT+TGG | 0.170429 | 4.4:+8799506 | MS.gene28427:CDS |
| TGAAATCCATGGTTGCATTT+AGG | 0.236983 | 4.4:-8799842 | None:intergenic |
| TTGCATTAAACTCCATTATA+AGG | 0.292690 | 4.4:+8799597 | MS.gene28427:CDS |
| ACCACTAGAACCTGAAGATT+TGG | 0.300487 | 4.4:+8800009 | MS.gene28427:CDS |
| CATTATAAGGTGTGCCTTAA+GGG | 0.301317 | 4.4:+8799610 | MS.gene28427:CDS |
| TGAATCGTTATAATAGTTTC+TGG | 0.311667 | 4.4:-8799986 | None:intergenic |
| CGAAGAGTCGTTGTTGTTGA+TGG | 0.313102 | 4.4:-8799645 | None:intergenic |
| CCATTATAAGGTGTGCCTTA+AGG | 0.325361 | 4.4:+8799609 | MS.gene28427:CDS |
| AGCAAATAAAAGCACATAAT+AGG | 0.335356 | 4.4:-8799571 | None:intergenic |
| TAGTTACGCTCCAAATCTTC+AGG | 0.356200 | 4.4:-8800019 | None:intergenic |
| CTTGAAACTTGTCGGAAGAT+TGG | 0.358710 | 4.4:+8799929 | MS.gene28427:CDS |
| CCTTAAGGCACACCTTATAA+TGG | 0.373664 | 4.4:-8799609 | None:intergenic |
| AAGATTTGGAGCGTAACTAT+AGG | 0.385286 | 4.4:+8800023 | MS.gene28427:CDS |
| CAACAACAATTCACCTCAAT+TGG | 0.398418 | 4.4:+8799679 | MS.gene28427:CDS |
| TCTGGCACTGGCAACACAAT+TGG | 0.406141 | 4.4:-8799968 | None:intergenic |
| GTTGGTGATTGATAATCAAT+TGG | 0.420758 | 4.4:-8799455 | None:intergenic |
| ACGTTCGTTGCATTGACAAA+TGG | 0.439104 | 4.4:+8799864 | MS.gene28427:CDS |
| AGATTTGGAGCGTAACTATA+GGG | 0.450405 | 4.4:+8800024 | MS.gene28427:CDS |
| AATGCCTTCTTGAAACTTGT+CGG | 0.456546 | 4.4:+8799921 | MS.gene28427:CDS |
| ACAAGAAGCTCATGGAGAAA+TGG | 0.473383 | 4.4:-8799398 | None:intergenic |
| GTTATAATAGTTTCTGGCAC+TGG | 0.477505 | 4.4:-8799980 | None:intergenic |
| CAGCTGAATAACTCACTGTT+GGG | 0.480794 | 4.4:-8799739 | None:intergenic |
| GTTTGTTAACACAGGGGAGC+TGG | 0.485159 | 4.4:-8799477 | None:intergenic |
| AGAAGGCATTGTCTACACTT+TGG | 0.485230 | 4.4:-8799908 | None:intergenic |
| ATTCCTTTGTTGACCAATTG+AGG | 0.485311 | 4.4:-8799692 | None:intergenic |
| TTGCATTGACAAATGGCTAA+AGG | 0.492896 | 4.4:+8799871 | MS.gene28427:CDS |
| GGCTACGTTTGAAACCCTTA+AGG | 0.504858 | 4.4:-8799624 | None:intergenic |
| TCGGAAGATTGGTGGGTCGC+AGG | 0.513588 | 4.4:+8799940 | MS.gene28427:CDS |
| GAAACTTGTCGGAAGATTGG+TGG | 0.516541 | 4.4:+8799932 | MS.gene28427:CDS |
| TCAGCTGAATAACTCACTGT+TGG | 0.529659 | 4.4:-8799740 | None:intergenic |
| TTGTCGAATCTCGCACAAGA+AGG | 0.564290 | 4.4:+8799417 | MS.gene28427:CDS |
| AAACTTGTCGGAAGATTGGT+GGG | 0.571944 | 4.4:+8799933 | MS.gene28427:CDS |
| TTGTGATTGTTTGTTAACAC+AGG | 0.572000 | 4.4:-8799485 | None:intergenic |
| TCTTCCGACAAGTTTCAAGA+AGG | 0.582332 | 4.4:-8799925 | None:intergenic |
| TGTCTCTCAGAGTTCACAAA+GGG | 0.586259 | 4.4:+8799800 | MS.gene28427:CDS |
| TCCAAATCTTCAGGTTCTAG+TGG | 0.587103 | 4.4:-8800010 | None:intergenic |
| TGCAACGAACGTGAAATCCA+TGG | 0.607145 | 4.4:-8799853 | None:intergenic |
| TGTGATTGTTTGTTAACACA+GGG | 0.607685 | 4.4:-8799484 | None:intergenic |
| ATACACTCTATATCTAGACT+TGG | 0.610683 | 4.4:-8799773 | None:intergenic |
| TCACCTCAATTGGTCAACAA+AGG | 0.615305 | 4.4:+8799689 | MS.gene28427:CDS |
| GAGATTCGACAAGAAGCTCA+TGG | 0.622395 | 4.4:-8799406 | None:intergenic |
| GTTAACACAGGGGAGCTGGT+TGG | 0.624144 | 4.4:-8799473 | None:intergenic |
| ATGTCTCTCAGAGTTCACAA+AGG | 0.686490 | 4.4:+8799799 | MS.gene28427:CDS |
| GTGATTGTTTGTTAACACAG+GGG | 0.719628 | 4.4:-8799483 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGAATCGTTATAATAGTTTC+TGG | - | chr4.4:8799989-8800008 | None:intergenic | 25.0% |
| ! | TTGCATTAAACTCCATTATA+AGG | + | chr4.4:8799597-8799616 | MS.gene28427:CDS | 25.0% |
| !! | AATTCAACAGACTCAAATTT+TGG | + | chr4.4:8799506-8799525 | MS.gene28427:CDS | 25.0% |
| !! | AGCAAATAAAAGCACATAAT+AGG | - | chr4.4:8799574-8799593 | None:intergenic | 25.0% |
| ATACACTCTATATCTAGACT+TGG | - | chr4.4:8799776-8799795 | None:intergenic | 30.0% | |
| ! | ATTTTACCTAAATGCAACCA+TGG | + | chr4.4:8799836-8799855 | MS.gene28427:CDS | 30.0% |
| ! | TGTGATTGTTTGTTAACACA+GGG | - | chr4.4:8799487-8799506 | None:intergenic | 30.0% |
| ! | TTGTGATTGTTTGTTAACAC+AGG | - | chr4.4:8799488-8799507 | None:intergenic | 30.0% |
| !! | GTTGGTGATTGATAATCAAT+TGG | - | chr4.4:8799458-8799477 | None:intergenic | 30.0% |
| AATGCCTTCTTGAAACTTGT+CGG | + | chr4.4:8799921-8799940 | MS.gene28427:CDS | 35.0% | |
| ATTCCTTTGTTGACCAATTG+AGG | - | chr4.4:8799695-8799714 | None:intergenic | 35.0% | |
| CAACAACAATTCACCTCAAT+TGG | + | chr4.4:8799679-8799698 | MS.gene28427:CDS | 35.0% | |
| CATTATAAGGTGTGCCTTAA+GGG | + | chr4.4:8799610-8799629 | MS.gene28427:CDS | 35.0% | |
| TGAAATCCATGGTTGCATTT+AGG | - | chr4.4:8799845-8799864 | None:intergenic | 35.0% | |
| ! | AAGATTTGGAGCGTAACTAT+AGG | + | chr4.4:8800023-8800042 | MS.gene28427:CDS | 35.0% |
| ! | AGATTTGGAGCGTAACTATA+GGG | + | chr4.4:8800024-8800043 | MS.gene28427:CDS | 35.0% |
| ! | GTGATTGTTTGTTAACACAG+GGG | - | chr4.4:8799486-8799505 | None:intergenic | 35.0% |
| ! | TTGCATTGACAAATGGCTAA+AGG | + | chr4.4:8799871-8799890 | MS.gene28427:CDS | 35.0% |
| !! | GTTATAATAGTTTCTGGCAC+TGG | - | chr4.4:8799983-8800002 | None:intergenic | 35.0% |
| AAACTTGTCGGAAGATTGGT+GGG | + | chr4.4:8799933-8799952 | MS.gene28427:CDS | 40.0% | |
| ACAAGAAGCTCATGGAGAAA+TGG | - | chr4.4:8799401-8799420 | None:intergenic | 40.0% | |
| ACCACTAGAACCTGAAGATT+TGG | + | chr4.4:8800009-8800028 | MS.gene28427:CDS | 40.0% | |
| ATGTCTCTCAGAGTTCACAA+AGG | + | chr4.4:8799799-8799818 | MS.gene28427:CDS | 40.0% | |
| CAGCTGAATAACTCACTGTT+GGG | - | chr4.4:8799742-8799761 | None:intergenic | 40.0% | |
| CCATTATAAGGTGTGCCTTA+AGG | + | chr4.4:8799609-8799628 | MS.gene28427:CDS | 40.0% | |
| CCTTAAGGCACACCTTATAA+TGG | - | chr4.4:8799612-8799631 | None:intergenic | 40.0% | |
| CTTGAAACTTGTCGGAAGAT+TGG | + | chr4.4:8799929-8799948 | MS.gene28427:CDS | 40.0% | |
| TAGTTACGCTCCAAATCTTC+AGG | - | chr4.4:8800022-8800041 | None:intergenic | 40.0% | |
| TCACCTCAATTGGTCAACAA+AGG | + | chr4.4:8799689-8799708 | MS.gene28427:CDS | 40.0% | |
| TCAGCTGAATAACTCACTGT+TGG | - | chr4.4:8799743-8799762 | None:intergenic | 40.0% | |
| TCTTCCGACAAGTTTCAAGA+AGG | - | chr4.4:8799928-8799947 | None:intergenic | 40.0% | |
| TGTCTCTCAGAGTTCACAAA+GGG | + | chr4.4:8799800-8799819 | MS.gene28427:CDS | 40.0% | |
| ! | ACGTTCGTTGCATTGACAAA+TGG | + | chr4.4:8799864-8799883 | MS.gene28427:CDS | 40.0% |
| ! | TCCAAATCTTCAGGTTCTAG+TGG | - | chr4.4:8800013-8800032 | None:intergenic | 40.0% |
| !! | AGAAGGCATTGTCTACACTT+TGG | - | chr4.4:8799911-8799930 | None:intergenic | 40.0% |
| GAAACTTGTCGGAAGATTGG+TGG | + | chr4.4:8799932-8799951 | MS.gene28427:CDS | 45.0% | |
| GAGATTCGACAAGAAGCTCA+TGG | - | chr4.4:8799409-8799428 | None:intergenic | 45.0% | |
| TGCAACGAACGTGAAATCCA+TGG | - | chr4.4:8799856-8799875 | None:intergenic | 45.0% | |
| TTGTCGAATCTCGCACAAGA+AGG | + | chr4.4:8799417-8799436 | MS.gene28427:CDS | 45.0% | |
| ! | CGAAGAGTCGTTGTTGTTGA+TGG | - | chr4.4:8799648-8799667 | None:intergenic | 45.0% |
| ! | GGCTACGTTTGAAACCCTTA+AGG | - | chr4.4:8799627-8799646 | None:intergenic | 45.0% |
| ! | GTTTGTTAACACAGGGGAGC+TGG | - | chr4.4:8799480-8799499 | None:intergenic | 50.0% |
| !! | TCTGGCACTGGCAACACAAT+TGG | - | chr4.4:8799971-8799990 | None:intergenic | 50.0% |
| GTTAACACAGGGGAGCTGGT+TGG | - | chr4.4:8799476-8799495 | None:intergenic | 55.0% | |
| ! | TCGGAAGATTGGTGGGTCGC+AGG | + | chr4.4:8799940-8799959 | MS.gene28427:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 8799371 | 8800054 | 8799371 | ID=MS.gene28427 |
| chr4.4 | mRNA | 8799371 | 8800054 | 8799371 | ID=MS.gene28427.t1;Parent=MS.gene28427 |
| chr4.4 | exon | 8799371 | 8800054 | 8799371 | ID=MS.gene28427.t1.exon1;Parent=MS.gene28427.t1 |
| chr4.4 | CDS | 8799371 | 8800054 | 8799371 | ID=cds.MS.gene28427.t1;Parent=MS.gene28427.t1 |
| Gene Sequence |
| Protein sequence |
