AlfalfaGEDB | MS.gene58110

M. sativa cultivar XinJiangDaYe / MS.gene58110

KEGG: K19040
GO: -
PFAM: PF13639.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58110.t1	GAU35065.1	85.1	228	33	1	1	228	1	227	2.40E-94	355.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58110.t1	Q6NML0	44.2	215	100	4	21	227	23	225	3.1e-42	173.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58110.t1	A0A2Z6NGL8	85.1	228	33	1	1	228	1	227	1.7e-94	355.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene030654	MS.gene58110	PPI
MS.gene28431	MS.gene58110	PPI
MS.gene58107	MS.gene58110	PPI
MS.gene28425	MS.gene58110	PPI
MS.gene88015	MS.gene58110	PPI
MS.gene030658	MS.gene58110	PPI
MS.gene76770	MS.gene58110	PPI
MS.gene030651	MS.gene58110	PPI
MS.gene58109	MS.gene58110	PPI
MS.gene013346	MS.gene58110	PPI
MS.gene030660	MS.gene58110	PPI
MS.gene58110	MS.gene70254	PPI
MS.gene70257	MS.gene58110	PPI
MS.gene28424	MS.gene58110	PPI
MS.gene70256	MS.gene58110	PPI
MS.gene28430	MS.gene58110	PPI
MS.gene58110	MS.gene70255	PPI
MS.gene94889	MS.gene58110	PPI
MS.gene58110	MS.gene28431	PPI
MS.gene030657	MS.gene58110	PPI
MS.gene030656	MS.gene58110	PPI
MS.gene58106	MS.gene58110	PPI
MS.gene70250	MS.gene58110	PPI
MS.gene70253	MS.gene58110	PPI
MS.gene31002	MS.gene58110	PPI
MS.gene48772	MS.gene58110	PPI
MS.gene049319	MS.gene58110	PPI
MS.gene030653	MS.gene58110	PPI
MS.gene58111	MS.gene58110	PPI
MS.gene28426	MS.gene58110	PPI
MS.gene06444	MS.gene58110	PPI
MS.gene58108	MS.gene58110	PPI
MS.gene28428	MS.gene58110	PPI
MS.gene28429	MS.gene58110	PPI
MS.gene28427	MS.gene58110	PPI
MS.gene030652	MS.gene58110	PPI
MS.gene70254	MS.gene58110	PPI
MS.gene70249	MS.gene58110	PPI
MS.gene030659	MS.gene58110	PPI
MS.gene58105	MS.gene58110	PPI
MS.gene70255	MS.gene58110	PPI
MS.gene58104	MS.gene58110	PPI
MS.gene58110	MS.gene31002	PPI
MS.gene030655	MS.gene58110	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58110.t1	MTR_8g092840	91.667	228	19	0	1	228	1	228	6.29e-145	404
MS.gene58110.t1	MTR_8g092960	82.456	228	30	2	1	228	1	218	1.23e-128	362
MS.gene58110.t1	MTR_8g093010	78.855	227	37	4	1	225	1	218	1.23e-118	337
MS.gene58110.t1	MTR_8g092970	77.333	225	42	1	1	225	1	216	1.31e-113	324
MS.gene58110.t1	MTR_8g092930	77.333	225	50	1	1	225	1	224	3.41e-112	321
MS.gene58110.t1	MTR_8g092990	80.531	226	43	1	1	225	1	226	6.08e-111	318
MS.gene58110.t1	MTR_8g092985	76.056	213	47	2	1	212	1	210	6.41e-104	299
MS.gene58110.t1	MTR_3g095560	61.739	230	79	4	1	225	1	226	1.02e-90	267
MS.gene58110.t1	MTR_3g094000	47.468	158	76	3	31	187	15	166	3.44e-39	134
MS.gene58110.t1	MTR_7g073200	45.509	167	72	5	46	204	19	174	6.87e-38	130
MS.gene58110.t1	MTR_3g116000	47.619	147	68	5	56	200	24	163	3.19e-34	121
MS.gene58110.t1	MTR_5g024730	44.785	163	73	6	56	210	28	181	7.96e-34	121
MS.gene58110.t1	MTR_8g073120	48.062	129	54	4	57	182	22	140	1.50e-30	112
MS.gene58110.t1	MTR_2g035800	38.312	154	83	3	30	183	4	145	4.06e-30	110
MS.gene58110.t1	MTR_4g094725	38.158	152	84	3	33	183	7	149	7.38e-29	106
MS.gene58110.t1	MTR_7g113800	34.868	152	77	5	44	186	28	166	1.53e-19	86.3
MS.gene58110.t1	MTR_3g110190	37.209	129	74	3	66	188	13	140	1.81e-19	85.9
MS.gene58110.t1	MTR_1g082550	32.680	153	84	4	42	186	32	173	4.96e-19	84.7
MS.gene58110.t1	MTR_8g023400	45.570	79	40	2	113	190	92	168	1.87e-18	82.8
MS.gene58110.t1	MTR_1g100737	38.636	132	69	2	62	189	49	172	2.58e-18	80.1
MS.gene58110.t1	MTR_7g117540	32.308	130	86	1	59	188	22	149	3.05e-18	81.6
MS.gene58110.t1	MTR_3g071300	32.576	132	83	2	57	185	23	151	3.64e-18	79.0
MS.gene58110.t1	MTR_4g120270	43.836	73	38	1	110	182	77	146	4.96e-18	80.9
MS.gene58110.t1	MTR_1g043410	26.667	150	95	3	43	183	23	166	5.97e-18	81.3
MS.gene58110.t1	MTR_6g055030	36.667	120	72	2	65	182	51	168	1.85e-17	79.7
MS.gene58110.t1	MTR_5g064980	31.507	146	87	3	42	185	48	182	3.79e-17	79.7
MS.gene58110.t1	MTR_5g082940	46.053	76	40	1	111	185	73	148	4.39e-17	76.3
MS.gene58110.t1	MTR_8g066780	32.317	164	91	4	68	219	58	213	9.36e-17	78.2
MS.gene58110.t1	MTR_7g116220	40.000	80	46	1	110	187	67	146	1.09e-16	75.5
MS.gene58110.t1	MTR_4g063070	41.975	81	46	1	103	182	298	378	1.37e-16	78.2
MS.gene58110.t1	MTR_3g099650	42.308	78	43	1	111	186	105	182	1.42e-16	77.8
MS.gene58110.t1	MTR_4g030070	30.894	123	80	2	103	225	75	192	1.56e-16	75.9
MS.gene58110.t1	MTR_6g087150	33.750	160	84	5	30	183	19	162	1.60e-16	77.8
MS.gene58110.t1	MTR_2g096350	60.417	48	19	0	135	182	130	177	2.66e-16	75.1
MS.gene58110.t1	MTR_1g492830	28.402	169	102	3	53	221	14	163	2.67e-16	75.1
MS.gene58110.t1	MTR_4g056590	40.000	80	43	2	110	189	97	171	3.82e-16	74.3
MS.gene58110.t1	MTR_5g071930	48.684	76	35	2	112	187	65	136	5.76e-16	73.9
MS.gene58110.t1	MTR_3g464780	42.308	78	42	1	112	186	101	178	9.63e-16	74.3
MS.gene58110.t1	MTR_4g129420	43.038	79	45	0	108	186	112	190	1.10e-15	75.9
MS.gene58110.t1	MTR_2g436100	42.466	73	41	1	110	182	90	161	1.37e-15	74.3
MS.gene58110.t1	MTR_3g078450	33.577	137	84	3	88	223	51	181	2.02e-15	72.8
MS.gene58110.t1	MTR_5g064890	28.758	153	100	4	42	186	49	200	2.68e-15	73.9
MS.gene58110.t1	MTR_5g030010	39.506	81	48	1	106	186	115	194	3.75e-15	73.9
MS.gene58110.t1	MTR_7g076250	28.906	128	83	3	56	182	12	132	5.48e-15	70.9
MS.gene58110.t1	MTR_8g089880	37.500	80	49	1	113	192	127	205	6.62e-15	72.4
MS.gene58110.t1	MTR_7g108855	39.362	94	47	3	114	198	67	159	8.57e-15	70.5
MS.gene58110.t1	MTR_3g078470	37.113	97	59	2	90	185	54	149	1.31e-14	70.5
MS.gene58110.t1	MTR_7g116180	38.667	75	44	1	113	185	67	141	1.32e-14	69.7
MS.gene58110.t1	MTR_4g093830	42.857	70	39	1	113	182	126	194	1.59e-14	72.0
MS.gene58110.t1	MTR_1g070425	38.667	75	44	1	113	185	68	142	1.91e-14	69.3
MS.gene58110.t1	MTR_2g055790	32.283	127	73	2	60	186	33	146	2.15e-14	69.7
MS.gene58110.t1	MTR_1g070140	38.961	77	45	2	107	182	97	172	2.82e-14	71.2
MS.gene58110.t1	MTR_5g026730	30.216	139	80	5	53	182	6	136	3.02e-14	68.6
MS.gene58110.t1	MTR_3g100400	40.278	72	42	1	111	182	128	198	3.46e-14	71.2
MS.gene58110.t1	MTR_2g009310	60.000	45	18	0	138	182	159	203	3.90e-14	70.9
MS.gene58110.t1	MTR_3g114500	32.727	110	68	3	75	182	8	113	5.20e-14	67.0
MS.gene58110.t1	MTR_3g012550	26.036	169	110	5	52	218	21	176	6.18e-14	67.8
MS.gene58110.t1	MTR_3g091620	43.243	74	41	1	113	186	101	173	6.81e-14	70.1
MS.gene58110.t1	MTR_5g064990	38.462	78	46	1	111	186	112	189	7.53e-14	70.1
MS.gene58110.t1	MTR_2g090950	29.371	143	96	1	45	182	23	165	7.84e-14	68.9
MS.gene58110.t1	MTR_5g026720	29.839	124	78	4	66	182	14	135	1.17e-13	66.6
MS.gene58110.t1	MTR_2g090905	41.558	77	40	1	111	182	37	113	1.90e-13	65.5
MS.gene58110.t1	MTR_3g086700	36.364	99	57	2	93	185	22	120	2.01e-13	66.6
MS.gene58110.t1	MTR_5g066250	38.889	72	43	1	111	182	132	202	2.07e-13	68.9
MS.gene58110.t1	MTR_4g106680	28.235	170	100	3	34	182	6	174	2.18e-13	68.2
MS.gene58110.t1	MTR_6g007737	30.370	135	83	3	61	185	71	204	2.48e-13	68.6
MS.gene58110.t1	MTR_5g076990	34.109	129	79	3	59	182	21	148	3.41e-13	67.8
MS.gene58110.t1	MTR_1g074190	30.081	123	72	3	80	190	61	181	3.55e-13	68.2
MS.gene58110.t1	MTR_2g041200	50.909	55	27	0	128	182	97	151	3.76e-13	65.9
MS.gene58110.t1	MTR_5g034790	40.260	77	45	1	109	185	112	187	3.83e-13	68.2
MS.gene58110.t1	MTR_4g108830	34.343	99	61	2	86	183	122	217	3.99e-13	66.6
MS.gene58110.t1	MTR_8g099495	39.241	79	46	2	106	183	313	390	4.74e-13	67.8
MS.gene58110.t1	MTR_1g056350	37.179	78	45	2	108	182	69	145	5.15e-13	65.1
MS.gene58110.t1	MTR_3g086730	38.750	80	47	1	108	185	41	120	5.35e-13	66.2
MS.gene58110.t1	MTR_5g009190	37.500	80	49	1	104	182	257	336	7.75e-13	67.0
MS.gene58110.t1	MTR_5g009210	37.500	80	49	1	104	182	278	357	9.01e-13	67.0
MS.gene58110.t1	MTR_8g063660	37.975	79	48	1	109	187	64	141	1.07e-12	66.6
MS.gene58110.t1	MTR_3g091200	39.437	71	42	1	113	182	303	373	1.34e-12	66.6
MS.gene58110.t1	MTR_8g028465	37.143	70	41	1	113	182	90	156	1.37e-12	64.7
MS.gene58110.t1	MTR_8g074900	40.000	75	40	1	111	185	156	225	1.41e-12	65.1
MS.gene58110.t1	MTR_6g007670	34.021	97	51	3	109	202	1	87	1.43e-12	65.5
MS.gene58110.t1	MTR_4g108830	34.021	97	60	2	88	183	96	189	2.39e-12	63.9
MS.gene58110.t1	MTR_5g092790	42.466	73	39	2	112	182	156	227	2.44e-12	64.7
MS.gene58110.t1	MTR_7g059360	43.939	66	36	1	119	183	136	201	3.30e-12	64.3
MS.gene58110.t1	MTR_5g009200	39.437	71	42	1	113	182	322	392	4.66e-12	65.1
MS.gene58110.t1	MTR_4g022410	30.147	136	88	3	63	198	43	171	4.76e-12	63.2
MS.gene58110.t1	MTR_1g026070	35.135	74	44	1	109	182	44	113	4.87e-12	61.6
MS.gene58110.t1	MTR_7g079290	40.984	61	36	0	137	197	152	212	8.11e-12	62.8
MS.gene58110.t1	MTR_5g022920	36.842	76	47	1	111	185	159	234	9.09e-12	62.8
MS.gene58110.t1	MTR_8g019710	57.778	45	19	0	138	182	52	96	9.44e-12	61.2
MS.gene58110.t1	MTR_7g079280	35.211	71	45	1	113	182	80	150	9.78e-12	62.0
MS.gene58110.t1	MTR_8g032690	46.154	52	28	0	140	191	19	70	1.12e-11	60.1
MS.gene58110.t1	MTR_3g081030	36.250	80	49	1	119	198	100	177	1.15e-11	62.4
MS.gene58110.t1	MTR_7g116200	39.437	71	41	1	112	182	67	135	1.26e-11	61.6
MS.gene58110.t1	MTR_6g007680	39.437	71	42	1	112	182	39	108	1.60e-11	60.8
MS.gene58110.t1	MTR_5g092750	60.465	43	17	0	140	182	185	227	2.52e-11	61.6
MS.gene58110.t1	MTR_8g071815	53.488	43	20	0	140	182	90	132	2.67e-11	60.8
MS.gene58110.t1	MTR_2g079320	32.432	111	66	2	82	185	96	204	2.79e-11	61.2
MS.gene58110.t1	MTR_8g066740	32.061	131	79	3	59	182	21	148	3.13e-11	62.0
MS.gene58110.t1	MTR_3g087900	46.154	65	30	3	123	186	55	115	3.62e-11	60.1
MS.gene58110.t1	MTR_8g099515	39.437	71	42	1	113	182	309	379	3.75e-11	62.4
MS.gene58110.t1	MTR_8g027745	34.615	78	50	1	106	182	279	356	4.42e-11	62.0
MS.gene58110.t1	MTR_3g078120	30.400	125	82	4	61	182	5	127	6.19e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58110.t1	AT1G49230	51.643	213	84	4	11	219	17	214	7.47e-65	200
MS.gene58110.t1	AT1G49200	45.116	215	98	4	21	227	24	226	2.66e-58	184
MS.gene58110.t1	AT1G49210	46.512	215	95	4	21	227	23	225	2.70e-58	184
MS.gene58110.t1	AT1G49220	50.000	180	73	3	21	195	23	190	6.14e-57	181
MS.gene58110.t1	AT3G18773	43.243	222	107	7	11	227	13	220	2.00e-52	169
MS.gene58110.t1	AT5G05280	49.057	159	71	3	32	187	9	160	4.87e-43	143
MS.gene58110.t1	AT3G10910	48.718	156	63	5	49	201	26	167	2.12e-39	134
MS.gene58110.t1	AT1G20823	43.114	167	80	5	23	186	3	157	4.30e-36	126
MS.gene58110.t1	AT1G76410	43.243	148	81	2	41	188	8	152	2.01e-34	122
MS.gene58110.t1	AT5G01880	40.860	186	82	6	12	196	1	159	1.01e-27	103
MS.gene58110.t1	AT2G17450	41.045	134	62	3	58	185	25	147	1.07e-27	104
MS.gene58110.t1	AT4G35480	37.079	178	87	5	54	217	19	185	2.21e-26	101
MS.gene58110.t1	AT5G47610	35.625	160	91	3	23	182	2	149	5.75e-26	99.4
MS.gene58110.t1	AT4G17245	36.196	163	83	4	22	182	2	145	1.17e-22	90.9
MS.gene58110.t1	AT1G22500	35.664	143	83	4	59	198	40	176	3.16e-19	85.5
MS.gene58110.t1	AT4G40070	34.000	150	90	3	64	209	49	193	3.78e-19	84.7
MS.gene58110.t1	AT1G72310	48.718	78	38	1	109	186	98	173	2.84e-18	82.4
MS.gene58110.t1	AT1G72200	31.875	160	88	5	57	212	59	201	1.18e-17	81.3
MS.gene58110.t1	AT2G27940	37.000	100	60	2	107	206	109	205	1.64e-17	79.0
MS.gene58110.t1	AT3G14320	47.887	71	35	1	113	183	63	131	2.61e-17	77.8
MS.gene58110.t1	AT1G53820	44.872	78	39	2	109	185	91	165	3.49e-17	79.0
MS.gene58110.t1	AT3G05200	32.639	144	89	3	48	187	36	175	1.05e-16	78.6
MS.gene58110.t1	AT4G09110	33.058	121	73	2	64	182	51	165	1.31e-16	77.4
MS.gene58110.t1	AT5G57750	31.496	127	82	2	61	183	40	165	1.36e-16	75.9
MS.gene58110.t1	AT1G28040	36.538	104	63	2	82	182	192	295	1.64e-16	77.0
MS.gene58110.t1	AT4G10160	33.858	127	74	3	63	186	24	143	1.65e-16	75.9
MS.gene58110.t1	AT3G16720	39.326	89	51	2	109	197	90	175	2.27e-16	76.6
MS.gene58110.t1	AT2G35000	31.579	133	87	2	58	186	49	181	2.70e-16	77.0
MS.gene58110.t1	AT4G09120	46.053	76	39	1	112	185	93	168	3.33e-16	76.6
MS.gene58110.t1	AT1G35330	29.762	168	98	4	24	185	21	174	3.64e-16	76.3
MS.gene58110.t1	AT5G27420	44.444	81	41	2	110	187	92	171	6.86e-16	75.9
MS.gene58110.t1	AT4G17905	66.667	45	15	0	138	182	179	223	1.37e-15	74.7
MS.gene58110.t1	AT4G17905	66.667	45	15	0	138	182	153	197	1.39e-15	74.7
MS.gene58110.t1	AT1G74410	37.363	91	56	1	95	185	132	221	1.51e-15	73.2
MS.gene58110.t1	AT2G20030	45.714	70	37	1	113	182	98	166	1.54e-15	75.1
MS.gene58110.t1	AT2G18650	43.590	78	44	0	109	186	95	172	1.71e-15	75.1
MS.gene58110.t1	AT3G03550	59.184	49	20	0	138	186	157	205	2.07e-15	74.7
MS.gene58110.t1	AT4G15975	37.363	91	55	1	95	185	33	121	2.37e-15	72.8
MS.gene58110.t1	AT5G17600	43.056	72	40	1	111	182	114	184	2.64e-15	74.3
MS.gene58110.t1	AT4G30400	41.333	75	44	0	108	182	102	176	2.85e-15	74.7
MS.gene58110.t1	AT4G09130	43.590	78	42	1	110	185	88	165	3.48e-15	73.9
MS.gene58110.t1	AT1G04360	28.788	132	84	2	61	182	45	176	3.96e-15	73.9
MS.gene58110.t1	AT1G23980	32.168	143	76	5	61	186	52	190	4.98e-15	73.6
MS.gene58110.t1	AT2G25410	30.864	162	105	2	23	182	213	369	7.73e-15	73.2
MS.gene58110.t1	AT3G18930	37.069	116	56	5	113	217	120	229	1.20e-14	72.8
MS.gene58110.t1	AT3G18930	37.069	116	56	5	113	217	120	229	1.20e-14	72.8
MS.gene58110.t1	AT3G18930	37.069	116	56	5	113	217	120	229	1.20e-14	72.8
MS.gene58110.t1	AT4G28890	42.254	71	40	1	113	183	97	166	1.27e-14	72.8
MS.gene58110.t1	AT2G46494	29.197	137	91	3	52	182	222	358	1.60e-14	72.0
MS.gene58110.t1	AT2G42360	29.771	131	79	2	55	182	30	150	1.66e-14	70.5
MS.gene58110.t1	AT1G32361	37.500	104	59	4	83	185	101	199	1.67e-14	71.6
MS.gene58110.t1	AT1G33480	32.673	101	65	2	113	213	75	172	1.72e-14	70.9
MS.gene58110.t1	AT2G46493	32.673	101	65	2	85	182	80	180	2.12e-14	69.3
MS.gene58110.t1	AT4G09100	37.179	78	47	2	107	182	50	127	3.42e-14	67.4
MS.gene58110.t1	AT5G42200	30.201	149	95	5	34	182	7	146	4.68e-14	67.8
MS.gene58110.t1	AT5G10380	39.241	79	47	1	108	186	104	181	5.10e-14	70.1
MS.gene58110.t1	AT5G05810	40.278	72	42	1	111	182	118	188	6.73e-14	70.5
MS.gene58110.t1	AT1G72220	57.778	45	19	0	138	182	175	219	6.95e-14	70.5
MS.gene58110.t1	AT3G62690	30.000	150	100	3	37	182	7	155	7.21e-14	69.3
MS.gene58110.t1	AT4G17920	30.303	132	85	2	61	185	24	155	7.92e-14	69.3
MS.gene58110.t1	AT3G48030	32.090	134	75	3	68	185	41	174	1.03e-13	68.9
MS.gene58110.t1	AT3G48030	32.090	134	75	3	68	185	119	252	1.20e-13	69.3
MS.gene58110.t1	AT2G34990	28.244	131	92	1	54	182	8	138	1.33e-13	68.9
MS.gene58110.t1	AT2G34990	28.244	131	92	1	54	182	30	160	1.43e-13	68.9
MS.gene58110.t1	AT4G10150	36.145	83	51	1	104	186	77	157	1.76e-13	67.8
MS.gene58110.t1	AT4G33565	52.941	51	24	0	138	188	215	265	1.81e-13	68.9
MS.gene58110.t1	AT5G66070	42.105	76	41	2	110	185	149	221	1.84e-13	67.4
MS.gene58110.t1	AT5G66070	42.105	76	41	2	110	185	149	221	1.84e-13	67.4
MS.gene58110.t1	AT2G35420	41.558	77	42	2	106	182	72	145	2.04e-13	67.8
MS.gene58110.t1	AT5G07040	26.119	134	86	3	52	183	15	137	2.83e-13	65.9
MS.gene58110.t1	AT5G66070	42.105	76	41	2	110	185	173	245	2.85e-13	67.4
MS.gene58110.t1	AT3G11110	29.530	149	99	2	34	182	7	149	3.07e-13	65.5
MS.gene58110.t1	AT5G58580	39.474	76	46	0	111	186	109	184	3.25e-13	67.8
MS.gene58110.t1	AT2G35910	38.158	76	46	1	113	188	121	195	4.10e-13	66.6
MS.gene58110.t1	AT5G06490	33.333	102	52	2	113	208	96	187	5.05e-13	65.9
MS.gene58110.t1	AT5G43420	25.000	168	99	3	61	207	38	199	1.16e-12	66.6
MS.gene58110.t1	AT2G46495	39.474	76	44	1	109	182	287	362	1.33e-12	66.6
MS.gene58110.t1	AT2G46495	39.474	76	44	1	109	182	259	334	1.35e-12	66.2
MS.gene58110.t1	AT5G53110	38.028	71	43	1	113	182	302	372	1.43e-12	66.6
MS.gene58110.t1	AT2G47560	29.333	150	97	3	36	182	7	150	1.55e-12	65.1
MS.gene58110.t1	AT5G36001	61.702	47	18	0	137	183	261	307	1.59e-12	66.2
MS.gene58110.t1	AT3G19140	39.437	71	41	1	113	183	54	122	1.96e-12	63.2
MS.gene58110.t1	AT2G46160	34.940	83	47	1	113	188	104	186	2.73e-12	64.3
MS.gene58110.t1	AT2G46160	34.940	83	47	1	113	188	104	186	2.73e-12	64.3
MS.gene58110.t1	AT5G40250	50.000	48	24	0	139	186	142	189	2.76e-12	65.5
MS.gene58110.t1	AT2G34000	37.333	75	44	1	112	183	60	134	3.56e-12	62.4
MS.gene58110.t1	AT3G61550	29.464	112	62	2	87	188	80	184	1.12e-11	62.4
MS.gene58110.t1	AT2G42350	30.841	107	62	3	76	182	48	142	1.38e-11	62.4
MS.gene58110.t1	AT2G18670	32.000	75	51	0	108	182	78	152	1.83e-11	61.2
MS.gene58110.t1	AT4G26400	44.118	68	30	2	115	182	223	282	1.86e-11	63.2
MS.gene58110.t1	AT4G26400	44.118	68	30	2	115	182	223	282	1.86e-11	63.2
MS.gene58110.t1	AT5G56340	39.506	81	41	2	102	182	228	300	2.15e-11	63.2
MS.gene58110.t1	AT4G35840	37.333	75	45	1	111	183	160	234	2.54e-11	61.6
MS.gene58110.t1	AT1G35630	36.735	98	60	2	116	212	209	305	3.49e-11	62.0
MS.gene58110.t1	AT2G17730	37.333	75	45	1	111	183	165	239	4.38e-11	61.2
MS.gene58110.t1	AT1G53010	27.684	177	76	4	54	188	12	178	5.48e-11	60.1
MS.gene58110.t1	AT5G46650	31.214	173	83	8	35	185	2	160	6.90e-11	61.2
MS.gene58110.t1	AT2G01735	46.667	60	31	1	128	187	295	353	8.08e-11	61.2
MS.gene58110.t1	AT2G03000	48.936	47	23	1	139	185	480	525	9.21e-11	61.2

Find 40 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTCAACTAACTCATATTT+TGG	0.143662	4.2:+9493489	MS.gene58110:CDS
ATTGATGATCAATTGGATTT+TGG	0.218436	4.2:-9493431	None:intergenic
CGGTGCCAGAAACTATTATT+AGG	0.257137	4.2:+9493961	MS.gene58110:CDS
TGAGTTGAAACTACCAAGTT+TGG	0.317109	4.2:+9493740	MS.gene58110:CDS
TGAATCCTAATAATAGTTTC+TGG	0.344198	4.2:-9493966	None:intergenic
TGGAAACCATGATTGCATTT+AGG	0.379959	4.2:-9493822	None:intergenic
GAGACTTGTCGAAAGATTGT+TGG	0.388982	4.2:+9493912	MS.gene58110:CDS
TTGCATTAAACTTCATCATA+AGG	0.400685	4.2:+9493580	MS.gene58110:CDS
GGAGGCACTGTCTGCACTTA+GGG	0.406481	4.2:-9493887	None:intergenic
AGTTACATTCAAAAGCTTCA+TGG	0.410074	4.2:-9493998	None:intergenic
CAACAACAATCCACCTCAAT+TGG	0.419352	4.2:+9493659	MS.gene58110:CDS
ATGTTCGTTGCATCGACAAA+TGG	0.447158	4.2:+9493844	MS.gene58110:CDS
GTTGGTGATTGATGATCAAT+TGG	0.451468	4.2:-9493438	None:intergenic
TCAGTTGAATAACTTACTGT+TGG	0.468597	4.2:-9493720	None:intergenic
AGGAGGCACTGTCTGCACTT+AGG	0.469581	4.2:-9493888	None:intergenic
ATTCCTTTGTTGACCAATTG+AGG	0.479348	4.2:-9493672	None:intergenic
CAGTTGAATAACTTACTGTT+GGG	0.481542	4.2:-9493719	None:intergenic
TTGTTGAATCTCACACAAGA+AGG	0.499335	4.2:+9493400	MS.gene58110:CDS
AGCACCGCCACCTATGTTGC+CGG	0.502426	4.2:+9493941	MS.gene58110:CDS
CTAATAATAGTTTCTGGCAC+CGG	0.527248	4.2:-9493960	None:intergenic
GGAATTCACGAAAGGTGAAA+AGG	0.529132	4.2:+9493788	MS.gene58110:CDS
GTTTCTGGCACCGGCAACAT+AGG	0.529637	4.2:-9493951	None:intergenic
TTGTCGAAAGATTGTTGGAT+CGG	0.534154	4.2:+9493917	MS.gene58110:CDS
ATACACTCTGTATCCAAACT+TGG	0.542352	4.2:-9493753	None:intergenic
GGCACCGGCAACATAGGTGG+CGG	0.561343	4.2:-9493945	None:intergenic
GTGAGAACAGGGGACGTTGT+TGG	0.562716	4.2:-9493456	None:intergenic
ATTTGTCGATGCAACGAACA+TGG	0.562919	4.2:-9493842	None:intergenic
AATATGAGTTAGTTGAATTG+CGG	0.563063	4.2:-9493485	None:intergenic
CCTTTGTTGACCAATTGAGG+TGG	0.571148	4.2:-9493669	None:intergenic
ATGGAGAAGAGGTAAAGTAA+AGG	0.584415	4.2:-9493370	None:intergenic
GAGATTCAACAAGAAGCTCA+TGG	0.584576	4.2:-9493389	None:intergenic
ACAAGAAGCTCATGGAGAAG+AGG	0.587733	4.2:-9493381	None:intergenic
TCTGGCACCGGCAACATAGG+TGG	0.595566	4.2:-9493948	None:intergenic
CAATCTTTCGACAAGTCTCA+AGG	0.597223	4.2:-9493908	None:intergenic
TCAAAAGCTTCATGGTCTAG+TGG	0.599238	4.2:-9493990	None:intergenic
CCACCTCAATTGGTCAACAA+AGG	0.601823	4.2:+9493669	MS.gene58110:CDS
AGAGTGTATTATATGCCTCT+CGG	0.602500	4.2:+9493767	MS.gene58110:CDS
TGCCTCTCGGAATTCACGAA+AGG	0.628377	4.2:+9493780	MS.gene58110:CDS
CACCTTTCGTGAATTCCGAG+AGG	0.634223	4.2:-9493782	None:intergenic
TCTTTCGACAAGTCTCAAGG+AGG	0.776052	4.2:-9493905	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AGCTACATTTAAAAATCTTA+AGG	-	chr4.2:9493610-9493629	None:intergenic	20.0%
!!!	AATTCAACTAACTCATATTT+TGG	+	chr4.2:9493489-9493508	MS.gene58110:CDS	20.0%
!	AATATGAGTTAGTTGAATTG+CGG	-	chr4.2:9493488-9493507	None:intergenic	25.0%
!	TGAATCCTAATAATAGTTTC+TGG	-	chr4.2:9493969-9493988	None:intergenic	25.0%
!	TTGCATTAAACTTCATCATA+AGG	+	chr4.2:9493580-9493599	MS.gene58110:CDS	25.0%
!!	AAGCTTTTGAATGTAACTAT+AGG	+	chr4.2:9494003-9494022	MS.gene58110:CDS	25.0%
!!	AGCTTTTGAATGTAACTATA+GGG	+	chr4.2:9494004-9494023	MS.gene58110:CDS	25.0%
!!!	ATTGATGATCAATTGGATTT+TGG	-	chr4.2:9493434-9493453	None:intergenic	25.0%
	AGTTACATTCAAAAGCTTCA+TGG	-	chr4.2:9494001-9494020	None:intergenic	30.0%
	CAGTTGAATAACTTACTGTT+GGG	-	chr4.2:9493722-9493741	None:intergenic	30.0%
	TCAGTTGAATAACTTACTGT+TGG	-	chr4.2:9493723-9493742	None:intergenic	30.0%
!	ATTTTGCCTAAATGCAATCA+TGG	+	chr4.2:9493816-9493835	MS.gene58110:CDS	30.0%
	AGAGTGTATTATATGCCTCT+CGG	+	chr4.2:9493767-9493786	MS.gene58110:CDS	35.0%
	ATACACTCTGTATCCAAACT+TGG	-	chr4.2:9493756-9493775	None:intergenic	35.0%
	ATGGAGAAGAGGTAAAGTAA+AGG	-	chr4.2:9493373-9493392	None:intergenic	35.0%
	ATTCCTTTGTTGACCAATTG+AGG	-	chr4.2:9493675-9493694	None:intergenic	35.0%
	TGGAAACCATGATTGCATTT+AGG	-	chr4.2:9493825-9493844	None:intergenic	35.0%
	TTGTCGAAAGATTGTTGGAT+CGG	+	chr4.2:9493917-9493936	MS.gene58110:CDS	35.0%
	TTGTTGAATCTCACACAAGA+AGG	+	chr4.2:9493400-9493419	MS.gene58110:CDS	35.0%
!	TGAGTTGAAACTACCAAGTT+TGG	+	chr4.2:9493740-9493759	MS.gene58110:CDS	35.0%
!!	CTAATAATAGTTTCTGGCAC+CGG	-	chr4.2:9493963-9493982	None:intergenic	35.0%
!!	GTTGGTGATTGATGATCAAT+TGG	-	chr4.2:9493441-9493460	None:intergenic	35.0%
	ATTTGTCGATGCAACGAACA+TGG	-	chr4.2:9493845-9493864	None:intergenic	40.0%
	CAACAACAATCCACCTCAAT+TGG	+	chr4.2:9493659-9493678	MS.gene58110:CDS	40.0%
	CAATCTTTCGACAAGTCTCA+AGG	-	chr4.2:9493911-9493930	None:intergenic	40.0%
	GAGACTTGTCGAAAGATTGT+TGG	+	chr4.2:9493912-9493931	MS.gene58110:CDS	40.0%
	GAGATTCAACAAGAAGCTCA+TGG	-	chr4.2:9493392-9493411	None:intergenic	40.0%
	GGAATTCACGAAAGGTGAAA+AGG	+	chr4.2:9493788-9493807	MS.gene58110:CDS	40.0%
	TCAAAAGCTTCATGGTCTAG+TGG	-	chr4.2:9493993-9494012	None:intergenic	40.0%
!	ATGTTCGTTGCATCGACAAA+TGG	+	chr4.2:9493844-9493863	MS.gene58110:CDS	40.0%
!	CGGTGCCAGAAACTATTATT+AGG	+	chr4.2:9493961-9493980	MS.gene58110:CDS	40.0%
	ACAAGAAGCTCATGGAGAAG+AGG	-	chr4.2:9493384-9493403	None:intergenic	45.0%
	CCACCTCAATTGGTCAACAA+AGG	+	chr4.2:9493669-9493688	MS.gene58110:CDS	45.0%
	CCTTTGTTGACCAATTGAGG+TGG	-	chr4.2:9493672-9493691	None:intergenic	45.0%
	TCTTTCGACAAGTCTCAAGG+AGG	-	chr4.2:9493908-9493927	None:intergenic	45.0%
!!	TGCGGTTTTGTGTGAGAACA+GGG	-	chr4.2:9493470-9493489	None:intergenic	45.0%
!!	TTGCGGTTTTGTGTGAGAAC+AGG	-	chr4.2:9493471-9493490	None:intergenic	45.0%
	CACCTTTCGTGAATTCCGAG+AGG	-	chr4.2:9493785-9493804	None:intergenic	50.0%
	TGCCTCTCGGAATTCACGAA+AGG	+	chr4.2:9493780-9493799	MS.gene58110:CDS	50.0%
!!	GCGGTTTTGTGTGAGAACAG+GGG	-	chr4.2:9493469-9493488	None:intergenic	50.0%
	GTGAGAACAGGGGACGTTGT+TGG	-	chr4.2:9493459-9493478	None:intergenic	55.0%
!!	AGGAGGCACTGTCTGCACTT+AGG	-	chr4.2:9493891-9493910	None:intergenic	55.0%
!!	GGAGGCACTGTCTGCACTTA+GGG	-	chr4.2:9493890-9493909	None:intergenic	55.0%
!!	GTTTCTGGCACCGGCAACAT+AGG	-	chr4.2:9493954-9493973	None:intergenic	55.0%
	AGCACCGCCACCTATGTTGC+CGG	+	chr4.2:9493941-9493960	MS.gene58110:CDS	60.0%
!!	TCTGGCACCGGCAACATAGG+TGG	-	chr4.2:9493951-9493970	None:intergenic	60.0%
!!	GGCACCGGCAACATAGGTGG+CGG	-	chr4.2:9493948-9493967	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	9493354	9494040	9493354	ID=MS.gene58110
chr4.2	mRNA	9493354	9494040	9493354	ID=MS.gene58110.t1;Parent=MS.gene58110
chr4.2	exon	9493354	9494040	9493354	ID=MS.gene58110.t1.exon1;Parent=MS.gene58110.t1
chr4.2	CDS	9493354	9494040	9493354	ID=cds.MS.gene58110.t1;Parent=MS.gene58110.t1

Gene Sequence

>MS.gene58110

ATGTATGCTTCTACTTCCTTTACTTTACCTCTTCTCCATGAGCTTCTTGTTGAATCTCACACAAGAAGGTTGCTCTTCCAAAATCCAATTGATCATCAATCACCAACAACGTCCCCTGTTCTCACACAAAACCGCAATTCAACTAACTCATATTTTGGAATTCGTGTACTTGATGCAAATGTTGTGATGATACTTGCAGTTCTATTGTGTGCTCTTATTTGCTCTCTTGCATTAAACTTCATCATAAGGCGTGCCTTAAGATTTTTAAATGTAGCTCTCAACAACGACTCTTCTTCGAGTTCAAGCAACAACAATCCACCTCAATTGGTCAACAAAGGAATCAAGAAGAAAGCTCTCAAGACATTCCCAACAGTAAGTTATTCAACTGAGTTGAAACTACCAAGTTTGGATACAGAGTGTATTATATGCCTCTCGGAATTCACGAAAGGTGAAAAGGTGCACATTTTGCCTAAATGCAATCATGGTTTCCATGTTCGTTGCATCGACAAATGGCTAAAATCACACTCATCATGCCCTAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGATCGGAAGCACCGCCACCTATGTTGCCGGTGCCAGAAACTATTATTAGGATTCAGCCACTAGACCATGAAGCTTTTGAATGTAACTATAGGGAAGAAAGTAGATAA

Protein sequence

>MS.gene58110.t1

MYASTSFTLPLLHELLVESHTRRLLFQNPIDHQSPTTSPVLTQNRNSTNSYFGIRVLDANVVMILAVLLCALICSLALNFIIRRALRFLNVALNNDSSSSSSNNNPPQLVNKGIKKKALKTFPTVSYSTELKLPSLDTECIICLSEFTKGEKVHILPKCNHGFHVRCIDKWLKSHSSCPKCRQCLLETCRKIVGSEAPPPMLPVPETIIRIQPLDHEAFECNYREESR