AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70257


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70257.t1 MTR_8g092840 95.595 227 9 1 1 226 1 227 7.73e-157 434
MS.gene70257.t1 MTR_8g093010 79.736 227 36 3 1 225 1 219 8.56e-127 357
MS.gene70257.t1 MTR_8g092960 84.000 225 25 3 1 224 1 215 1.70e-126 357
MS.gene70257.t1 MTR_8g092970 80.088 226 35 2 1 225 1 217 4.20e-122 345
MS.gene70257.t1 MTR_8g092930 78.319 226 47 2 1 225 1 225 6.81e-118 335
MS.gene70257.t1 MTR_8g092990 78.509 228 47 2 1 226 1 228 5.96e-109 313
MS.gene70257.t1 MTR_8g092985 77.934 213 42 3 1 211 1 210 7.53e-107 306
MS.gene70257.t1 MTR_3g095560 63.090 233 72 4 1 225 1 227 6.99e-98 285
MS.gene70257.t1 MTR_3g094000 49.682 157 64 3 32 187 24 166 6.83e-44 145
MS.gene70257.t1 MTR_7g073200 50.350 143 63 3 45 186 18 153 3.03e-43 144
MS.gene70257.t1 MTR_3g116000 47.260 146 64 4 58 198 26 163 5.05e-36 126
MS.gene70257.t1 MTR_5g024730 47.445 137 62 3 57 191 29 157 7.87e-36 126
MS.gene70257.t1 MTR_8g073120 49.231 130 51 5 57 182 22 140 6.50e-34 120
MS.gene70257.t1 MTR_2g035800 38.961 154 82 3 30 183 4 145 1.04e-32 116
MS.gene70257.t1 MTR_4g094725 41.447 152 79 5 33 183 7 149 3.83e-31 112
MS.gene70257.t1 MTR_1g043410 28.188 149 92 3 44 183 24 166 1.69e-21 90.9
MS.gene70257.t1 MTR_7g113800 33.553 152 79 5 44 186 28 166 1.39e-20 89.0
MS.gene70257.t1 MTR_1g100737 44.898 98 50 1 96 189 75 172 1.54e-20 85.9
MS.gene70257.t1 MTR_8g023400 45.570 79 40 2 113 190 92 168 2.28e-19 85.1
MS.gene70257.t1 MTR_3g110190 46.154 78 41 1 111 188 64 140 2.45e-19 85.5
MS.gene70257.t1 MTR_3g071300 29.762 168 106 4 42 200 3 167 4.88e-19 81.3
MS.gene70257.t1 MTR_1g082550 32.886 149 89 5 42 186 32 173 5.83e-19 84.7
MS.gene70257.t1 MTR_6g055030 36.667 120 72 2 65 182 51 168 9.85e-19 83.2
MS.gene70257.t1 MTR_7g117540 57.895 57 24 0 132 188 93 149 2.61e-18 81.6
MS.gene70257.t1 MTR_4g120270 44.595 74 34 2 111 182 78 146 3.46e-18 81.3
MS.gene70257.t1 MTR_5g064980 39.796 98 54 2 90 185 88 182 4.62e-18 82.0
MS.gene70257.t1 MTR_6g087150 32.468 154 94 2 30 183 19 162 6.39e-18 81.6
MS.gene70257.t1 MTR_5g082940 37.405 131 72 4 80 209 44 165 7.07e-18 78.2
MS.gene70257.t1 MTR_4g063070 43.750 80 44 1 104 182 299 378 8.52e-18 81.6
MS.gene70257.t1 MTR_4g056590 43.590 78 39 2 112 189 99 171 1.57e-17 77.8
MS.gene70257.t1 MTR_3g099650 43.590 78 42 1 111 186 105 182 1.66e-17 80.5
MS.gene70257.t1 MTR_5g064890 32.759 116 75 2 73 186 86 200 2.68e-17 79.7
MS.gene70257.t1 MTR_7g116220 39.744 78 45 1 112 187 69 146 3.40e-17 76.6
MS.gene70257.t1 MTR_2g096350 61.702 47 18 0 136 182 131 177 4.37e-17 77.4
MS.gene70257.t1 MTR_5g071930 50.000 76 34 2 112 187 65 136 5.43e-17 76.6
MS.gene70257.t1 MTR_3g464780 43.590 78 41 1 112 186 101 178 5.95e-17 77.4
MS.gene70257.t1 MTR_3g078470 37.374 99 60 2 88 185 52 149 8.89e-17 76.3
MS.gene70257.t1 MTR_7g076250 38.393 112 60 3 111 221 61 164 1.01e-16 75.5
MS.gene70257.t1 MTR_4g030070 31.034 116 76 2 103 218 75 186 1.15e-16 76.3
MS.gene70257.t1 MTR_4g129420 43.038 79 45 0 108 186 112 190 1.27e-16 78.6
MS.gene70257.t1 MTR_1g492830 37.079 89 56 0 99 187 47 135 1.40e-16 75.9
MS.gene70257.t1 MTR_3g078450 39.130 92 55 1 95 185 58 149 3.20e-16 74.7
MS.gene70257.t1 MTR_2g436100 39.241 79 47 1 104 182 84 161 5.14e-16 75.5
MS.gene70257.t1 MTR_5g030010 39.241 79 47 1 108 186 117 194 5.43e-16 76.3
MS.gene70257.t1 MTR_8g089880 37.500 80 49 1 113 192 127 205 7.40e-16 74.7
MS.gene70257.t1 MTR_8g066780 32.530 166 86 5 26 186 44 188 7.64e-16 75.5
MS.gene70257.t1 MTR_7g116180 39.744 78 45 1 110 185 64 141 8.04e-16 72.8
MS.gene70257.t1 MTR_2g055790 32.787 122 73 2 65 186 34 146 1.02e-15 73.2
MS.gene70257.t1 MTR_3g100400 43.056 72 40 1 111 182 128 198 1.09e-15 75.5
MS.gene70257.t1 MTR_1g074190 31.967 122 69 3 81 190 62 181 1.43e-15 74.7
MS.gene70257.t1 MTR_1g070425 39.744 78 45 1 110 185 65 142 1.52e-15 72.4
MS.gene70257.t1 MTR_4g093830 42.857 70 39 1 113 182 126 194 1.59e-15 74.7
MS.gene70257.t1 MTR_1g070140 38.961 77 47 0 106 182 96 172 2.88e-15 73.9
MS.gene70257.t1 MTR_5g026730 30.714 140 78 4 53 182 6 136 4.81e-15 70.9
MS.gene70257.t1 MTR_2g090905 37.500 96 52 2 95 182 18 113 4.94e-15 69.7
MS.gene70257.t1 MTR_2g009310 60.000 45 18 0 138 182 159 203 5.04e-15 73.6
MS.gene70257.t1 MTR_2g090950 41.026 78 41 1 110 182 88 165 5.67e-15 72.0
MS.gene70257.t1 MTR_5g064990 39.744 78 45 1 111 186 112 189 6.08e-15 73.2
MS.gene70257.t1 MTR_4g108830 34.694 98 62 1 86 183 122 217 6.78e-15 71.2
MS.gene70257.t1 MTR_2g041200 33.803 142 64 5 51 182 30 151 9.65e-15 70.1
MS.gene70257.t1 MTR_6g007737 31.852 135 81 3 61 185 71 204 1.28e-14 72.4
MS.gene70257.t1 MTR_3g091620 41.892 74 42 1 113 186 101 173 1.81e-14 71.6
MS.gene70257.t1 MTR_7g079290 42.857 63 36 0 135 197 150 212 1.87e-14 70.1
MS.gene70257.t1 MTR_5g066250 40.278 72 42 1 111 182 132 202 2.27e-14 71.6
MS.gene70257.t1 MTR_5g034790 40.260 77 45 1 109 185 112 187 2.82e-14 71.2
MS.gene70257.t1 MTR_3g086700 36.957 92 51 2 98 182 26 117 2.91e-14 68.9
MS.gene70257.t1 MTR_5g092790 43.421 76 40 2 109 182 153 227 3.15e-14 69.7
MS.gene70257.t1 MTR_3g114500 38.554 83 47 2 100 182 35 113 3.18e-14 67.4
MS.gene70257.t1 MTR_5g076990 35.115 131 75 3 59 182 21 148 3.89e-14 70.5
MS.gene70257.t1 MTR_5g009210 38.750 80 48 1 104 182 278 357 4.26e-14 70.9
MS.gene70257.t1 MTR_4g108830 34.375 96 61 1 88 183 96 189 5.27e-14 68.2
MS.gene70257.t1 MTR_4g106680 38.667 75 45 1 108 182 101 174 5.62e-14 70.1
MS.gene70257.t1 MTR_7g108855 37.234 94 49 3 114 198 67 159 6.11e-14 68.2
MS.gene70257.t1 MTR_8g028465 38.571 70 40 1 113 182 90 156 6.15e-14 68.6
MS.gene70257.t1 MTR_1g056350 39.726 73 40 2 113 182 74 145 7.17e-14 67.4
MS.gene70257.t1 MTR_3g086730 36.842 95 53 2 98 185 26 120 8.25e-14 68.6
MS.gene70257.t1 MTR_8g074900 41.333 75 39 1 111 185 156 225 8.44e-14 68.6
MS.gene70257.t1 MTR_5g009190 37.500 80 49 1 104 182 257 336 9.65e-14 69.7
MS.gene70257.t1 MTR_8g099495 38.462 78 47 1 107 183 313 390 9.96e-14 69.7
MS.gene70257.t1 MTR_8g063660 37.975 79 48 1 109 187 64 141 1.02e-13 69.3
MS.gene70257.t1 MTR_3g091200 39.437 71 42 1 113 182 303 373 1.81e-13 68.9
MS.gene70257.t1 MTR_3g012550 27.407 135 89 3 52 182 21 150 1.82e-13 66.6
MS.gene70257.t1 MTR_6g007670 41.096 73 41 1 110 182 5 75 2.29e-13 67.8
MS.gene70257.t1 MTR_6g007670 43.662 71 40 0 112 182 144 214 6.38e-12 63.5
MS.gene70257.t1 MTR_7g059360 43.478 69 38 1 116 183 133 201 2.31e-13 67.4
MS.gene70257.t1 MTR_5g022920 37.662 77 47 1 110 185 158 234 2.50e-13 67.4
MS.gene70257.t1 MTR_5g026720 53.488 43 20 0 140 182 93 135 2.80e-13 65.5
MS.gene70257.t1 MTR_6g007680 39.726 73 43 1 110 182 37 108 4.89e-13 65.1
MS.gene70257.t1 MTR_7g079280 32.143 112 62 3 113 223 80 178 4.98e-13 65.5
MS.gene70257.t1 MTR_8g032690 41.667 96 39 4 140 226 19 106 5.27e-13 63.5
MS.gene70257.t1 MTR_5g092750 43.421 76 40 2 109 182 153 227 7.79e-13 65.9
MS.gene70257.t1 MTR_5g009200 39.437 71 42 1 113 182 322 392 8.07e-13 67.0
MS.gene70257.t1 MTR_8g019710 60.000 45 18 0 138 182 52 96 8.11e-13 63.9
MS.gene70257.t1 MTR_3g087900 49.231 65 28 3 123 186 55 115 1.00e-12 63.9
MS.gene70257.t1 MTR_2g079320 33.333 108 63 2 85 185 99 204 1.01e-12 65.1
MS.gene70257.t1 MTR_8g066740 32.824 131 78 3 59 182 21 148 1.09e-12 66.2
MS.gene70257.t1 MTR_1g026070 36.111 72 42 1 111 182 46 113 1.67e-12 62.8
MS.gene70257.t1 MTR_7g116200 38.356 73 43 1 110 182 65 135 2.89e-12 63.2
MS.gene70257.t1 MTR_8g071815 53.488 43 20 0 140 182 90 132 3.57e-12 63.2
MS.gene70257.t1 MTR_4g022410 32.292 96 65 0 103 198 76 171 4.25e-12 63.2
MS.gene70257.t1 MTR_3g078120 36.905 84 52 1 100 182 44 127 5.54e-12 62.0
MS.gene70257.t1 MTR_8g099515 41.667 72 39 2 113 182 309 379 6.15e-12 64.7
MS.gene70257.t1 MTR_3g081030 33.673 98 60 3 103 200 86 178 1.18e-11 62.4
MS.gene70257.t1 MTR_7g117350 34.667 75 44 1 113 182 282 356 1.19e-11 63.5
MS.gene70257.t1 MTR_7g117350 34.667 75 44 1 113 182 290 364 1.22e-11 63.5
MS.gene70257.t1 MTR_8g027745 36.620 71 44 1 113 182 286 356 1.51e-11 63.2
MS.gene70257.t1 MTR_7g096690 32.500 80 51 2 106 182 63 142 1.83e-11 62.8
MS.gene70257.t1 MTR_5g096410 37.778 90 41 3 110 185 238 326 2.09e-11 62.8
MS.gene70257.t1 MTR_5g096410 37.778 90 41 3 110 185 250 338 2.15e-11 62.8
MS.gene70257.t1 MTR_5g096410 37.778 90 41 3 110 185 247 335 2.16e-11 62.8
MS.gene70257.t1 MTR_6g055030 53.659 41 19 0 142 182 97 137 3.73e-11 61.6
MS.gene70257.t1 MTR_5g041310 56.818 44 18 1 139 182 114 156 4.12e-11 60.8
MS.gene70257.t1 MTR_4g106960 54.000 50 22 1 133 182 171 219 4.39e-11 61.6
MS.gene70257.t1 MTR_4g106960 54.000 50 22 1 133 182 171 219 4.44e-11 62.0
MS.gene70257.t1 MTR_7g116210 36.986 73 44 1 110 182 7 77 5.44e-11 58.5
MS.gene70257.t1 MTR_8g027980 33.333 75 48 1 116 188 93 167 5.54e-11 61.2
MS.gene70257.t1 MTR_4g106960 54.000 50 22 1 133 182 228 276 5.68e-11 61.6
MS.gene70257.t1 MTR_5g041330 56.818 44 18 1 139 182 104 146 6.13e-11 60.5
MS.gene70257.t1 MTR_4g106960 54.000 50 22 1 133 182 228 276 6.24e-11 61.6
MS.gene70257.t1 MTR_3g078540 41.270 63 36 1 127 188 66 128 8.08e-11 58.9
MS.gene70257.t1 MTR_4g116460 38.571 70 39 3 116 182 415 483 8.12e-11 61.2
MS.gene70257.t1 MTR_4g116460 38.571 70 39 3 116 182 458 526 8.94e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70257.t1 AT1G49230 52.294 218 84 4 11 223 17 219 6.14e-71 216
MS.gene70257.t1 AT1G49210 47.442 215 92 4 21 226 23 225 1.32e-60 190
MS.gene70257.t1 AT1G49220 48.309 207 81 5 21 214 23 216 1.55e-59 188
MS.gene70257.t1 AT1G49200 45.833 216 94 5 21 226 24 226 4.71e-59 186
MS.gene70257.t1 AT3G18773 43.612 227 108 7 6 226 8 220 1.53e-54 174
MS.gene70257.t1 AT5G05280 52.817 142 60 2 46 187 26 160 2.39e-45 149
MS.gene70257.t1 AT3G10910 54.135 133 57 2 57 186 29 160 1.22e-42 142
MS.gene70257.t1 AT1G20823 43.373 166 81 4 23 186 3 157 5.70e-38 131
MS.gene70257.t1 AT1G76410 45.205 146 71 2 46 188 13 152 2.38e-37 129
MS.gene70257.t1 AT5G01880 45.198 177 71 5 12 187 1 152 3.87e-32 115
MS.gene70257.t1 AT2G17450 41.912 136 58 4 58 185 25 147 6.74e-31 112
MS.gene70257.t1 AT5G47610 36.875 160 89 2 23 182 2 149 2.65e-29 108
MS.gene70257.t1 AT4G35480 39.456 147 69 3 54 186 19 159 4.19e-28 105
MS.gene70257.t1 AT4G17245 39.098 133 66 3 51 182 27 145 4.18e-25 97.1
MS.gene70257.t1 AT3G05200 33.333 156 97 3 65 213 49 204 1.76e-20 89.0
MS.gene70257.t1 AT1G72200 33.117 154 96 5 56 204 58 209 1.25e-19 86.7
MS.gene70257.t1 AT2G27940 39.604 101 58 2 99 199 101 198 1.72e-19 84.0
MS.gene70257.t1 AT1G72310 48.718 78 38 1 109 186 98 173 2.39e-19 85.1
MS.gene70257.t1 AT4G09120 35.766 137 77 4 48 182 38 165 1.46e-18 83.2
MS.gene70257.t1 AT1G53820 44.872 78 39 2 109 185 91 165 2.03e-18 82.4
MS.gene70257.t1 AT4G09110 34.711 121 71 3 64 182 51 165 2.25e-18 82.0
MS.gene70257.t1 AT1G35330 34.884 129 73 5 66 185 48 174 3.81e-18 82.0
MS.gene70257.t1 AT3G14320 49.296 71 34 1 113 183 63 131 3.84e-18 79.7
MS.gene70257.t1 AT4G40070 36.154 130 78 3 64 191 49 175 5.20e-18 81.6
MS.gene70257.t1 AT3G16720 36.893 103 59 3 109 211 90 186 7.93e-18 80.9
MS.gene70257.t1 AT5G57750 41.333 75 44 0 109 183 91 165 2.98e-17 77.4
MS.gene70257.t1 AT1G22500 30.000 150 101 3 53 200 31 178 3.33e-17 79.7
MS.gene70257.t1 AT1G28040 37.374 99 59 2 87 182 197 295 3.74e-17 79.0
MS.gene70257.t1 AT1G04360 29.771 131 82 2 62 182 46 176 3.89e-17 79.7
MS.gene70257.t1 AT4G30400 42.667 75 43 0 108 182 102 176 3.96e-17 80.1
MS.gene70257.t1 AT1G74410 38.000 100 55 2 86 185 129 221 6.28e-17 77.0
MS.gene70257.t1 AT2G35000 32.576 132 82 4 61 186 51 181 7.37e-17 78.6
MS.gene70257.t1 AT5G27420 45.570 79 39 2 112 187 94 171 8.64e-17 78.6
MS.gene70257.t1 AT2G20030 47.143 70 36 1 113 182 98 166 1.67e-16 77.8
MS.gene70257.t1 AT2G18650 43.590 78 44 0 109 186 95 172 1.80e-16 77.8
MS.gene70257.t1 AT4G17905 66.667 45 15 0 138 182 179 223 2.03e-16 77.0
MS.gene70257.t1 AT4G17905 66.667 45 15 0 138 182 153 197 2.18e-16 76.6
MS.gene70257.t1 AT5G17600 43.056 72 40 1 111 182 114 184 3.00e-16 77.0
MS.gene70257.t1 AT1G23980 31.250 176 93 7 34 186 20 190 3.28e-16 77.0
MS.gene70257.t1 AT3G03550 59.184 49 20 0 138 186 157 205 3.59e-16 76.6
MS.gene70257.t1 AT4G15975 37.363 91 55 1 95 185 33 121 3.84e-16 75.1
MS.gene70257.t1 AT4G09100 40.506 79 45 2 106 182 49 127 3.90e-16 72.8
MS.gene70257.t1 AT2G46493 42.667 75 42 1 109 182 106 180 4.33e-16 73.9
MS.gene70257.t1 AT2G25410 42.553 94 49 2 91 182 279 369 4.40e-16 76.6
MS.gene70257.t1 AT4G09130 45.205 73 38 1 112 182 90 162 4.61e-16 76.3
MS.gene70257.t1 AT2G46494 29.927 137 90 2 52 182 222 358 8.95e-16 75.5
MS.gene70257.t1 AT4G28890 43.662 71 39 1 113 183 97 166 1.15e-15 75.5
MS.gene70257.t1 AT4G10150 26.380 163 108 5 30 186 1 157 1.35e-15 73.6
MS.gene70257.t1 AT5G05810 43.056 72 40 1 111 182 118 188 2.04e-15 74.7
MS.gene70257.t1 AT2G35420 44.444 72 39 1 111 182 75 145 2.42e-15 73.2
MS.gene70257.t1 AT3G48030 37.931 87 48 1 105 185 88 174 2.83e-15 73.2
MS.gene70257.t1 AT5G07040 26.207 145 94 3 41 183 4 137 3.26e-15 70.9
MS.gene70257.t1 AT5G10380 39.241 79 47 1 108 186 104 181 3.60e-15 73.2
MS.gene70257.t1 AT3G19140 36.538 104 62 2 80 183 23 122 4.13e-15 70.1
MS.gene70257.t1 AT1G32361 34.532 139 83 5 83 221 101 231 4.41e-15 73.6
MS.gene70257.t1 AT3G48030 37.931 87 48 1 105 185 166 252 4.76e-15 73.6
MS.gene70257.t1 AT4G10160 32.031 128 75 4 63 186 24 143 5.35e-15 71.6
MS.gene70257.t1 AT2G34990 29.771 131 90 1 54 182 8 138 5.66e-15 72.8
MS.gene70257.t1 AT3G18930 37.391 115 56 5 113 216 120 229 5.94e-15 73.6
MS.gene70257.t1 AT3G18930 37.391 115 56 5 113 216 120 229 5.94e-15 73.6
MS.gene70257.t1 AT3G18930 37.391 115 56 5 113 216 120 229 5.94e-15 73.6
MS.gene70257.t1 AT2G34990 29.771 131 90 1 54 182 30 160 6.29e-15 72.8
MS.gene70257.t1 AT1G72220 57.778 45 19 0 138 182 175 219 1.00e-14 72.8
MS.gene70257.t1 AT5G66070 44.000 75 39 2 111 185 150 221 1.35e-14 70.5
MS.gene70257.t1 AT5G66070 44.000 75 39 2 111 185 150 221 1.35e-14 70.5
MS.gene70257.t1 AT4G17920 31.538 130 78 5 61 185 32 155 1.52e-14 71.2
MS.gene70257.t1 AT5G66070 44.000 75 39 2 111 185 174 245 2.14e-14 70.5
MS.gene70257.t1 AT5G43420 27.972 143 82 3 61 182 38 180 2.34e-14 71.6
MS.gene70257.t1 AT2G35910 39.474 76 45 1 113 188 121 195 2.55e-14 69.7
MS.gene70257.t1 AT5G42200 39.189 74 44 1 109 182 74 146 2.81e-14 68.6
MS.gene70257.t1 AT5G06490 33.663 101 52 2 113 207 96 187 2.85e-14 69.3
MS.gene70257.t1 AT4G33565 52.941 51 24 0 138 188 215 265 3.23e-14 71.2
MS.gene70257.t1 AT3G62690 48.438 64 32 1 119 182 93 155 4.01e-14 69.7
MS.gene70257.t1 AT5G58580 34.653 101 66 0 111 211 109 209 5.18e-14 70.1
MS.gene70257.t1 AT1G33480 29.825 114 75 2 113 226 75 183 5.66e-14 69.3
MS.gene70257.t1 AT2G46495 40.789 76 43 1 109 182 287 362 5.99e-14 70.5
MS.gene70257.t1 AT2G46495 40.789 76 43 1 109 182 259 334 6.18e-14 70.1
MS.gene70257.t1 AT5G53110 39.437 71 42 1 113 182 302 372 9.09e-14 70.1
MS.gene70257.t1 AT5G36001 63.043 46 17 0 137 182 261 306 1.87e-13 68.6
MS.gene70257.t1 AT2G34000 26.984 126 87 2 61 183 11 134 2.44e-13 65.9
MS.gene70257.t1 AT2G46160 36.145 83 46 1 113 188 104 186 2.88e-13 66.6
MS.gene70257.t1 AT2G46160 36.145 83 46 1 113 188 104 186 2.88e-13 66.6
MS.gene70257.t1 AT2G47560 40.000 80 45 2 104 182 73 150 3.50e-13 66.6
MS.gene70257.t1 AT5G40250 50.000 48 24 0 139 186 142 189 5.97e-13 67.4
MS.gene70257.t1 AT2G18670 34.667 75 49 0 108 182 78 152 6.77e-13 65.1
MS.gene70257.t1 AT4G35840 39.506 81 41 2 110 185 159 236 7.24e-13 66.2
MS.gene70257.t1 AT3G11110 37.349 83 52 0 100 182 67 149 8.62e-13 64.3
MS.gene70257.t1 AT2G17730 38.158 76 45 1 110 183 164 239 1.48e-12 65.1
MS.gene70257.t1 AT2G42360 36.000 75 48 0 108 182 76 150 1.78e-12 65.1
MS.gene70257.t1 AT4G26400 39.506 81 41 2 102 182 210 282 1.78e-12 66.2
MS.gene70257.t1 AT4G26400 39.506 81 41 2 102 182 210 282 1.78e-12 66.2
MS.gene70257.t1 AT3G61550 30.400 125 68 4 106 220 92 207 2.49e-12 64.3
MS.gene70257.t1 AT4G26580 37.037 81 45 2 110 185 254 333 5.85e-12 64.3
MS.gene70257.t1 AT4G26580 37.037 81 45 2 110 185 254 333 5.85e-12 64.3
MS.gene70257.t1 AT2G42350 37.333 75 45 1 108 182 70 142 6.63e-12 63.2
MS.gene70257.t1 AT5G56340 44.118 68 30 2 115 182 241 300 7.62e-12 64.3
MS.gene70257.t1 AT3G20395 33.663 101 63 2 85 185 120 216 1.24e-11 62.4
MS.gene70257.t1 AT3G47990 54.000 50 22 1 133 182 171 219 1.74e-11 62.8
MS.gene70257.t1 AT3G47990 54.000 50 22 1 133 182 171 219 1.74e-11 62.8
MS.gene70257.t1 AT3G47990 54.000 50 22 1 133 182 171 219 1.74e-11 62.8
MS.gene70257.t1 AT3G47990 54.000 50 22 1 133 182 228 276 1.97e-11 63.2
MS.gene70257.t1 AT3G47990 54.000 50 22 1 133 182 212 260 2.02e-11 62.8
MS.gene70257.t1 AT1G35630 42.029 69 38 2 116 183 209 276 2.39e-11 62.8
MS.gene70257.t1 AT2G03000 51.064 47 22 1 139 185 480 525 2.41e-11 63.2
MS.gene70257.t1 AT1G53010 50.000 50 25 0 139 188 129 178 3.12e-11 60.5
MS.gene70257.t1 AT1G35625 28.571 133 81 4 52 183 157 276 7.91e-11 61.2

Find 49 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCATAAGGTGCGCTTTA+AGG 0.098073 4.1:+8821776 MS.gene70257:CDS
AATTCAACCAACTCATATTT+TGG 0.106711 4.1:+8821673 MS.gene70257:CDS
ATTGATAATCAATTGGATTT+TGG 0.213343 4.1:-8821615 None:intergenic
GCACCTTATGATGGAGTTTA+AGG 0.230395 4.1:-8821767 None:intergenic
CGGTGCCAGAAACTATTATT+AGG 0.257137 4.1:+8822142 MS.gene70257:CDS
TGGAAACCATGATTGCATTT+AGG 0.272632 4.1:-8822006 None:intergenic
CGAAGAAGAGCCGTTGTTTA+GGG 0.291613 4.1:-8821812 None:intergenic
TCGAAGAAGAGCCGTTGTTT+AGG 0.297762 4.1:-8821813 None:intergenic
TGAATCCTAATAATAGTTTC+TGG 0.307133 4.1:-8822147 None:intergenic
AATATGAGTTGGTTGAATTA+TGG 0.317058 4.1:-8821669 None:intergenic
CAACAACTCTTCACCTCAAT+TGG 0.382798 4.1:+8821843 MS.gene70257:CDS
TTATGGTTGGGTGTGAGAAC+AGG 0.385568 4.1:-8821652 None:intergenic
GGGTGTGAGAACAGGGGAGC+TGG 0.412102 4.1:-8821644 None:intergenic
GAGACTTGTCGAAAGATTGT+TGG 0.413029 4.1:+8822096 MS.gene70257:CDS
GTTGGTGATTGATAATCAAT+TGG 0.420758 4.1:-8821622 None:intergenic
ACACACTCTGTATCCAAGTT+TGG 0.433946 4.1:-8821937 None:intergenic
GGAAGCACCACCTATGTTGC+CGG 0.443914 4.1:+8822122 MS.gene70257:CDS
ATGTTCGTTGCATCGACAAA+TGG 0.447158 4.1:+8822028 MS.gene70257:CDS
ATAGTTACGTTCAAAAGCTT+CGG 0.462496 4.1:-8822181 None:intergenic
AGCAAATAAGAGCACACAAT+AGG 0.463910 4.1:-8821738 None:intergenic
TCAGTTGAATAACTTACTGT+TGG 0.468597 4.1:-8821904 None:intergenic
ATTCCTTTGTTAGCCAATTG+AGG 0.468663 4.1:-8821856 None:intergenic
TTGTCGAAAGATTGTTGGAT+TGG 0.474737 4.1:+8822101 MS.gene70257:CDS
CCTTAAAGCGCACCTTATGA+TGG 0.477521 4.1:-8821776 None:intergenic
TGAGTTGAAACTACCAAACT+TGG 0.480980 4.1:+8821924 MS.gene70257:CDS
CAGTTGAATAACTTACTGTT+GGG 0.481542 4.1:-8821903 None:intergenic
ACGAATTCCAAAATATGAGT+TGG 0.498815 4.1:-8821680 None:intergenic
TATGGTTGGGTGTGAGAACA+GGG 0.503796 4.1:-8821651 None:intergenic
TTGTAGAATCTCACACAAGA+AGG 0.511006 4.1:+8821584 MS.gene70257:CDS
TTGCCTTAAACTCCATCATA+AGG 0.515596 4.1:+8821764 MS.gene70257:CDS
ATGGAGAAGTGGTGAAGTAA+AGG 0.523047 4.1:-8821554 None:intergenic
CTAATAATAGTTTCTGGCAC+CGG 0.527248 4.1:-8822141 None:intergenic
GTTTCTGGCACCGGCAACAT+AGG 0.529637 4.1:-8822132 None:intergenic
TGAGTTGGTTGAATTATGGT+TGG 0.539582 4.1:-8821665 None:intergenic
TGTCTCTCAGAGTTCACAAA+AGG 0.544000 4.1:+8821964 MS.gene70257:CDS
GAGTTGGTTGAATTATGGTT+GGG 0.549920 4.1:-8821664 None:intergenic
ATTTGTCGATGCAACGAACA+TGG 0.562919 4.1:-8822026 None:intergenic
TAACAAAGGAATCAAGAAGA+AGG 0.567789 4.1:+8821867 MS.gene70257:CDS
GTGAGAACAGGGGAGCTGGT+TGG 0.572964 4.1:-8821640 None:intergenic
AGGAGGCACTGTCTGCACTT+AGG 0.573168 4.1:-8822072 None:intergenic
GAGATTCTACAAGAAGCTCA+TGG 0.595637 4.1:-8821573 None:intergenic
CAATCTTTCGACAAGTCTCA+AGG 0.597223 4.1:-8822092 None:intergenic
ACAAGAAGCTCATGGAGAAG+TGG 0.602538 4.1:-8821565 None:intergenic
TCACCTCAATTGGCTAACAA+AGG 0.606400 4.1:+8821853 MS.gene70257:CDS
TCAAAAGCTTCGGCGTCTAG+CGG 0.624371 4.1:-8822171 None:intergenic
TCTGGCACCGGCAACATAGG+TGG 0.632227 4.1:-8822129 None:intergenic
ATGGTTGGGTGTGAGAACAG+GGG 0.716569 4.1:-8821650 None:intergenic
TCGAACGTAGCCCTAAACAA+CGG 0.719891 4.1:+8821802 MS.gene70257:CDS
TCTTTCGACAAGTCTCAAGG+AGG 0.776052 4.1:-8822089 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATAATCAATTGGATTT+TGG - chr4.1:8821618-8821637 None:intergenic 20.0%
! TGAATCCTAATAATAGTTTC+TGG - chr4.1:8822150-8822169 None:intergenic 25.0%
!! AATTCAACCAACTCATATTT+TGG + chr4.1:8821673-8821692 MS.gene70257:CDS 25.0%
!! ATTTTACCTAAATGCAATCA+TGG + chr4.1:8822000-8822019 MS.gene70257:CDS 25.0%
!!! AATATGAGTTGGTTGAATTA+TGG - chr4.1:8821672-8821691 None:intergenic 25.0%
ACGAATTCCAAAATATGAGT+TGG - chr4.1:8821683-8821702 None:intergenic 30.0%
ATAGTTACGTTCAAAAGCTT+CGG - chr4.1:8822184-8822203 None:intergenic 30.0%
CAGTTGAATAACTTACTGTT+GGG - chr4.1:8821906-8821925 None:intergenic 30.0%
TAACAAAGGAATCAAGAAGA+AGG + chr4.1:8821867-8821886 MS.gene70257:CDS 30.0%
TCAGTTGAATAACTTACTGT+TGG - chr4.1:8821907-8821926 None:intergenic 30.0%
!! GTTGGTGATTGATAATCAAT+TGG - chr4.1:8821625-8821644 None:intergenic 30.0%
ATTCCTTTGTTAGCCAATTG+AGG - chr4.1:8821859-8821878 None:intergenic 35.0%
TGGAAACCATGATTGCATTT+AGG - chr4.1:8822009-8822028 None:intergenic 35.0%
TTGCCTTAAACTCCATCATA+AGG + chr4.1:8821764-8821783 MS.gene70257:CDS 35.0%
TTGTAGAATCTCACACAAGA+AGG + chr4.1:8821584-8821603 MS.gene70257:CDS 35.0%
TTGTCGAAAGATTGTTGGAT+TGG + chr4.1:8822101-8822120 MS.gene70257:CDS 35.0%
! AGCAAATAAGAGCACACAAT+AGG - chr4.1:8821741-8821760 None:intergenic 35.0%
! GAGTTGGTTGAATTATGGTT+GGG - chr4.1:8821667-8821686 None:intergenic 35.0%
! TGAGTTGAAACTACCAAACT+TGG + chr4.1:8821924-8821943 MS.gene70257:CDS 35.0%
!! CTAATAATAGTTTCTGGCAC+CGG - chr4.1:8822144-8822163 None:intergenic 35.0%
!! TGAGTTGGTTGAATTATGGT+TGG - chr4.1:8821668-8821687 None:intergenic 35.0%
ACACACTCTGTATCCAAGTT+TGG - chr4.1:8821940-8821959 None:intergenic 40.0%
ATGGAGAAGTGGTGAAGTAA+AGG - chr4.1:8821557-8821576 None:intergenic 40.0%
ATTTGTCGATGCAACGAACA+TGG - chr4.1:8822029-8822048 None:intergenic 40.0%
CAACAACTCTTCACCTCAAT+TGG + chr4.1:8821843-8821862 MS.gene70257:CDS 40.0%
CAATCTTTCGACAAGTCTCA+AGG - chr4.1:8822095-8822114 None:intergenic 40.0%
GAGACTTGTCGAAAGATTGT+TGG + chr4.1:8822096-8822115 MS.gene70257:CDS 40.0%
GAGATTCTACAAGAAGCTCA+TGG - chr4.1:8821576-8821595 None:intergenic 40.0%
TCACCTCAATTGGCTAACAA+AGG + chr4.1:8821853-8821872 MS.gene70257:CDS 40.0%
TGTCTCTCAGAGTTCACAAA+AGG + chr4.1:8821964-8821983 MS.gene70257:CDS 40.0%
! ATGTTCGTTGCATCGACAAA+TGG + chr4.1:8822028-8822047 MS.gene70257:CDS 40.0%
! CGGTGCCAGAAACTATTATT+AGG + chr4.1:8822142-8822161 MS.gene70257:CDS 40.0%
! GCACCTTATGATGGAGTTTA+AGG - chr4.1:8821770-8821789 None:intergenic 40.0%
ACAAGAAGCTCATGGAGAAG+TGG - chr4.1:8821568-8821587 None:intergenic 45.0%
CCATCATAAGGTGCGCTTTA+AGG + chr4.1:8821776-8821795 MS.gene70257:CDS 45.0%
CCTTAAAGCGCACCTTATGA+TGG - chr4.1:8821779-8821798 None:intergenic 45.0%
CGAAGAAGAGCCGTTGTTTA+GGG - chr4.1:8821815-8821834 None:intergenic 45.0%
TATGGTTGGGTGTGAGAACA+GGG - chr4.1:8821654-8821673 None:intergenic 45.0%
TCGAACGTAGCCCTAAACAA+CGG + chr4.1:8821802-8821821 MS.gene70257:CDS 45.0%
TCGAAGAAGAGCCGTTGTTT+AGG - chr4.1:8821816-8821835 None:intergenic 45.0%
TCTTTCGACAAGTCTCAAGG+AGG - chr4.1:8822092-8822111 None:intergenic 45.0%
TTATGGTTGGGTGTGAGAAC+AGG - chr4.1:8821655-8821674 None:intergenic 45.0%
ATGGTTGGGTGTGAGAACAG+GGG - chr4.1:8821653-8821672 None:intergenic 50.0%
TCAAAAGCTTCGGCGTCTAG+CGG - chr4.1:8822174-8822193 None:intergenic 50.0%
!! AGGAGGCACTGTCTGCACTT+AGG - chr4.1:8822075-8822094 None:intergenic 55.0%
!! GGAAGCACCACCTATGTTGC+CGG + chr4.1:8822122-8822141 MS.gene70257:CDS 55.0%
!! GTTTCTGGCACCGGCAACAT+AGG - chr4.1:8822135-8822154 None:intergenic 55.0%
GTGAGAACAGGGGAGCTGGT+TGG - chr4.1:8821643-8821662 None:intergenic 60.0%
!! TCTGGCACCGGCAACATAGG+TGG - chr4.1:8822132-8822151 None:intergenic 60.0%
GGGTGTGAGAACAGGGGAGC+TGG - chr4.1:8821647-8821666 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 8821538 8822218 8821538 ID=MS.gene70257
chr4.1 mRNA 8821538 8822218 8821538 ID=MS.gene70257.t1;Parent=MS.gene70257
chr4.1 exon 8821538 8822218 8821538 ID=MS.gene70257.t1.exon1;Parent=MS.gene70257.t1
chr4.1 CDS 8821538 8822218 8821538 ID=cds.MS.gene70257.t1;Parent=MS.gene70257.t1
Gene Sequence

>MS.gene70257

ATGTATGCTTCTACTTCCTTTACTTCACCACTTCTCCATGAGCTTCTTGTAGAATCTCACACAAGAAGGTTGCTCTTCCAAAATCCAATTGATTATCAATCACCAACCAGCTCCCCTGTTCTCACACCCAACCATAATTCAACCAACTCATATTTTGGAATTCGTGAATTTGATGCGAATGTTGTGATGATACTTGCAGTCCTATTGTGTGCTCTTATTTGCTCACTTGCCTTAAACTCCATCATAAGGTGCGCTTTAAGGTTTTCGAACGTAGCCCTAAACAACGGCTCTTCTTCGAGTTCAAGCAACAACTCTTCACCTCAATTGGCTAACAAAGGAATCAAGAAGAAGGCTCTCAAGACATTCCCAACAGTAAGTTATTCAACTGAGTTGAAACTACCAAACTTGGATACAGAGTGTGTGATATGTCTCTCAGAGTTCACAAAAGGTGAAAAAGTGCGCATTTTACCTAAATGCAATCATGGTTTCCATGTTCGTTGCATCGACAAATGGCTAAAAGCACACTCATCATGTCCTAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGATTGGAAGCACCACCTATGTTGCCGGTGCCAGAAACTATTATTAGGATTCAACCGCTAGACGCCGAAGCTTTTGAACGTAACTATAGAGAATTAAGCTGA

Protein sequence

>MS.gene70257.t1

MYASTSFTSPLLHELLVESHTRRLLFQNPIDYQSPTSSPVLTPNHNSTNSYFGIREFDANVVMILAVLLCALICSLALNSIIRCALRFSNVALNNGSSSSSSNNSSPQLANKGIKKKALKTFPTVSYSTELKLPNLDTECVICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVGLEAPPMLPVPETIIRIQPLDAEAFERNYRELS