AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58106

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58106.t1 MTR_8g092985 87.204 211 27 0 1 211 1 211 3.75e-124 350
MS.gene58106.t1 MTR_8g092970 79.524 210 36 2 1 210 1 203 9.57e-109 311
MS.gene58106.t1 MTR_8g092930 78.302 212 43 2 1 210 1 211 1.20e-107 308
MS.gene58106.t1 MTR_8g092840 76.526 213 46 2 1 210 1 212 2.13e-106 305
MS.gene58106.t1 MTR_8g092960 72.857 210 49 1 1 210 1 202 7.75e-103 296
MS.gene58106.t1 MTR_8g093010 73.023 215 43 6 1 210 1 205 3.87e-101 292
MS.gene58106.t1 MTR_8g092990 79.812 213 40 1 1 210 1 213 4.63e-101 292
MS.gene58106.t1 MTR_3g095560 58.986 217 76 4 1 209 1 212 3.29e-81 242
MS.gene58106.t1 MTR_3g094000 44.848 165 88 2 32 195 14 176 2.21e-45 149
MS.gene58106.t1 MTR_7g073200 43.373 166 89 3 45 209 17 178 5.58e-42 140
MS.gene58106.t1 MTR_3g116000 47.059 136 68 3 59 192 26 159 5.83e-35 122
MS.gene58106.t1 MTR_5g024730 41.509 159 79 5 58 208 29 181 5.03e-34 121
MS.gene58106.t1 MTR_8g073120 47.619 126 56 4 58 180 22 140 4.71e-32 115
MS.gene58106.t1 MTR_2g035800 37.302 126 76 2 56 181 23 145 3.18e-27 102
MS.gene58106.t1 MTR_4g094725 42.742 124 64 3 61 181 30 149 1.06e-26 100
MS.gene58106.t1 MTR_3g071300 32.402 179 97 4 47 211 5 173 5.36e-23 91.3
MS.gene58106.t1 MTR_7g113800 36.000 150 73 7 46 184 29 166 4.44e-20 87.0
MS.gene58106.t1 MTR_1g043410 28.177 181 97 6 40 203 20 184 1.41e-19 85.1
MS.gene58106.t1 MTR_5g082940 47.368 76 39 1 109 183 73 148 1.43e-19 82.4
MS.gene58106.t1 MTR_6g055030 38.333 120 67 3 66 180 51 168 1.57e-19 85.1
MS.gene58106.t1 MTR_2g055790 34.454 119 72 2 66 184 34 146 5.66e-19 81.3
MS.gene58106.t1 MTR_3g110190 36.290 124 68 3 63 186 28 140 1.65e-18 82.8
MS.gene58106.t1 MTR_6g087150 38.217 157 74 7 35 181 19 162 2.45e-18 82.4
MS.gene58106.t1 MTR_7g117540 45.333 75 39 1 112 186 77 149 3.82e-18 80.9
MS.gene58106.t1 MTR_8g023400 48.571 70 34 1 111 180 92 159 3.98e-18 81.3
MS.gene58106.t1 MTR_3g099650 33.333 132 81 4 57 184 54 182 7.59e-18 80.9
MS.gene58106.t1 MTR_1g492830 30.709 127 85 1 62 185 9 135 1.19e-17 78.6
MS.gene58106.t1 MTR_5g064990 31.544 149 96 5 53 196 55 202 1.71e-17 80.1
MS.gene58106.t1 MTR_1g082550 33.103 145 86 5 46 184 34 173 2.08e-17 79.7
MS.gene58106.t1 MTR_7g116220 40.000 80 46 1 108 185 67 146 2.23e-17 76.6
MS.gene58106.t1 MTR_1g100737 43.421 76 39 1 109 180 90 165 2.28e-17 77.0
MS.gene58106.t1 MTR_4g120270 43.836 73 38 1 108 180 77 146 2.76e-17 78.2
MS.gene58106.t1 MTR_2g096350 60.417 48 19 0 133 180 130 177 4.02e-17 77.0
MS.gene58106.t1 MTR_4g129420 41.463 82 48 0 106 187 112 193 4.30e-17 79.3
MS.gene58106.t1 MTR_3g114500 34.188 117 73 2 64 180 1 113 1.01e-16 73.6
MS.gene58106.t1 MTR_4g063070 31.169 154 93 3 40 180 225 378 3.65e-16 76.3
MS.gene58106.t1 MTR_3g464780 38.889 90 51 2 110 196 101 189 4.52e-16 74.7
MS.gene58106.t1 MTR_2g436100 39.726 73 43 1 108 180 90 161 4.71e-16 75.1
MS.gene58106.t1 MTR_3g012550 28.244 131 92 2 52 180 20 150 6.15e-16 72.8
MS.gene58106.t1 MTR_5g071930 41.489 94 49 3 110 203 65 152 6.30e-16 73.2
MS.gene58106.t1 MTR_3g078450 38.043 92 56 1 93 183 58 149 8.15e-16 73.6
MS.gene58106.t1 MTR_3g091200 28.235 170 104 4 18 180 215 373 8.72e-16 75.1
MS.gene58106.t1 MTR_3g078470 32.143 112 69 2 93 197 58 169 1.13e-15 73.2
MS.gene58106.t1 MTR_5g030010 30.818 159 91 6 62 205 59 213 1.18e-15 74.7
MS.gene58106.t1 MTR_5g066250 43.373 83 36 2 103 180 126 202 1.99e-15 74.3
MS.gene58106.t1 MTR_5g034790 41.053 95 48 3 95 184 97 188 2.18e-15 73.9
MS.gene58106.t1 MTR_4g030070 33.721 86 55 1 101 186 75 158 2.61e-15 72.0
MS.gene58106.t1 MTR_8g066780 30.065 153 92 4 62 203 59 207 2.62e-15 73.6
MS.gene58106.t1 MTR_5g064980 29.268 164 90 5 29 183 36 182 2.90e-15 73.9
MS.gene58106.t1 MTR_3g100400 44.444 72 39 1 109 180 128 198 7.54e-15 72.8
MS.gene58106.t1 MTR_4g093830 42.857 70 39 1 111 180 126 194 1.20e-14 72.0
MS.gene58106.t1 MTR_3g086700 31.452 124 79 3 62 183 1 120 1.22e-14 69.7
MS.gene58106.t1 MTR_2g009310 57.778 45 19 0 136 180 159 203 1.31e-14 72.0
MS.gene58106.t1 MTR_8g099515 31.613 155 101 4 40 193 241 391 1.41e-14 72.0
MS.gene58106.t1 MTR_2g090905 30.769 130 71 3 84 206 10 127 1.47e-14 67.8
MS.gene58106.t1 MTR_3g091620 31.532 111 63 3 108 206 98 207 1.57e-14 71.6
MS.gene58106.t1 MTR_5g064890 51.020 49 24 0 136 184 152 200 1.82e-14 71.2
MS.gene58106.t1 MTR_7g116180 37.333 75 45 1 111 183 67 141 1.95e-14 68.9
MS.gene58106.t1 MTR_1g026070 28.205 117 80 1 64 180 1 113 2.17e-14 67.8
MS.gene58106.t1 MTR_8g089880 57.778 45 19 0 136 180 151 195 2.38e-14 70.5
MS.gene58106.t1 MTR_6g007737 32.667 150 83 4 62 198 71 215 2.66e-14 70.9
MS.gene58106.t1 MTR_1g070425 37.333 75 45 1 111 183 68 142 3.17e-14 68.2
MS.gene58106.t1 MTR_8g099495 38.462 78 47 1 105 181 313 390 3.41e-14 70.9
MS.gene58106.t1 MTR_3g086730 38.750 80 47 1 106 183 41 120 4.06e-14 68.9
MS.gene58106.t1 MTR_8g063660 38.824 85 48 2 104 185 58 141 4.97e-14 70.1
MS.gene58106.t1 MTR_4g108830 43.902 82 41 3 102 181 111 189 5.21e-14 68.2
MS.gene58106.t1 MTR_4g108830 43.902 82 41 3 102 181 139 217 5.66e-14 68.6
MS.gene58106.t1 MTR_1g056350 30.928 97 63 2 106 199 69 164 5.75e-14 67.4
MS.gene58106.t1 MTR_5g026730 55.814 43 19 0 138 180 94 136 6.06e-14 67.4
MS.gene58106.t1 MTR_4g056590 36.986 73 42 1 108 180 97 165 6.78e-14 67.8
MS.gene58106.t1 MTR_7g076250 52.174 46 22 0 135 180 87 132 1.02e-13 67.0
MS.gene58106.t1 MTR_8g074900 38.667 75 41 1 109 183 156 225 1.17e-13 67.8
MS.gene58106.t1 MTR_5g009190 38.272 81 49 1 102 181 257 337 1.65e-13 68.6
MS.gene58106.t1 MTR_5g009210 38.750 80 48 1 102 180 278 357 2.19e-13 68.2
MS.gene58106.t1 MTR_5g026720 51.111 45 22 0 136 180 91 135 2.24e-13 65.5
MS.gene58106.t1 MTR_2g041200 43.548 62 35 0 119 180 90 151 2.54e-13 65.9
MS.gene58106.t1 MTR_5g022920 38.158 76 46 1 109 183 159 234 2.78e-13 66.6
MS.gene58106.t1 MTR_2g090950 56.818 44 19 0 137 180 122 165 3.15e-13 66.6
MS.gene58106.t1 MTR_4g106680 30.882 136 77 3 60 180 41 174 4.72e-13 67.0
MS.gene58106.t1 MTR_1g074190 37.037 81 46 2 105 180 93 173 5.58e-13 67.0
MS.gene58106.t1 MTR_1g070140 37.662 77 46 2 105 180 97 172 6.17e-13 67.0
MS.gene58106.t1 MTR_5g092790 34.951 103 63 3 81 180 126 227 7.34e-13 65.5
MS.gene58106.t1 MTR_8g028465 32.292 96 52 2 111 206 90 172 7.98e-13 65.1
MS.gene58106.t1 MTR_7g079290 44.828 58 32 0 133 190 150 207 8.98e-13 65.1
MS.gene58106.t1 MTR_6g007670 40.260 77 41 2 107 180 1 75 9.08e-13 65.5
MS.gene58106.t1 MTR_6g007670 43.662 71 40 0 110 180 144 214 3.76e-11 61.2
MS.gene58106.t1 MTR_5g009200 40.845 71 41 1 111 180 322 392 1.08e-12 66.2
MS.gene58106.t1 MTR_8g072020 32.143 140 78 5 42 180 325 448 1.36e-12 66.2
MS.gene58106.t1 MTR_8g072020 32.143 140 78 5 42 180 364 487 1.47e-12 66.2
MS.gene58106.t1 MTR_7g059360 41.379 58 34 0 124 181 144 201 1.72e-12 64.7
MS.gene58106.t1 MTR_7g108855 40.000 70 41 1 112 180 67 136 1.82e-12 63.9
MS.gene58106.t1 MTR_6g007680 42.254 71 40 1 110 180 39 108 2.18e-12 62.8
MS.gene58106.t1 MTR_8g032690 40.000 65 36 1 138 202 19 80 2.34e-12 61.6
MS.gene58106.t1 MTR_8g071815 53.488 43 20 0 138 180 90 132 2.86e-12 63.2
MS.gene58106.t1 MTR_4g116460 44.286 70 35 4 114 180 458 526 3.51e-12 65.1
MS.gene58106.t1 MTR_4g116460 44.286 70 35 4 114 180 415 483 3.58e-12 65.1
MS.gene58106.t1 MTR_1g090480 33.065 124 73 3 72 186 28 150 4.56e-12 62.4
MS.gene58106.t1 MTR_2g079320 37.805 82 42 2 109 183 125 204 4.67e-12 62.8
MS.gene58106.t1 MTR_5g092750 58.140 43 18 0 138 180 185 227 4.97e-12 63.5
MS.gene58106.t1 MTR_4g022410 33.613 119 67 3 62 180 49 155 6.73e-12 62.4
MS.gene58106.t1 MTR_5g076990 41.333 75 41 1 109 180 74 148 6.79e-12 63.5
MS.gene58106.t1 MTR_8g027745 35.135 74 47 1 108 180 283 356 7.69e-12 63.9
MS.gene58106.t1 MTR_7g079280 28.571 126 68 3 82 206 62 166 8.38e-12 61.6
MS.gene58106.t1 MTR_1g032440 32.692 104 57 3 87 190 260 350 9.29e-12 63.5
MS.gene58106.t1 MTR_3g078120 31.746 126 79 3 62 180 2 127 1.31e-11 60.8
MS.gene58106.t1 MTR_7g116200 36.620 71 43 1 110 180 67 135 1.71e-11 60.8
MS.gene58106.t1 MTR_3g081030 37.838 74 44 1 117 190 100 171 1.75e-11 61.6
MS.gene58106.t1 MTR_4g102870 30.000 140 83 3 61 186 225 363 2.03e-11 62.8
MS.gene58106.t1 MTR_7g117350 33.333 75 45 1 111 180 290 364 2.31e-11 62.4
MS.gene58106.t1 MTR_7g117350 33.333 75 45 1 111 180 282 356 2.43e-11 62.4
MS.gene58106.t1 MTR_1g096780 30.159 126 80 5 58 181 159 278 2.63e-11 62.4
MS.gene58106.t1 MTR_8g009190 48.980 49 25 0 136 184 103 151 2.74e-11 62.0
MS.gene58106.t1 MTR_6g055030 53.659 41 19 0 140 180 97 137 3.34e-11 61.6
MS.gene58106.t1 MTR_3g087900 52.000 50 22 2 136 184 67 115 3.91e-11 59.7
MS.gene58106.t1 MTR_3g107995 31.132 106 57 3 94 199 281 370 4.19e-11 61.6
MS.gene58106.t1 MTR_2g044570 38.596 57 35 0 134 190 79 135 5.36e-11 61.2
MS.gene58106.t1 MTR_5g010720 50.000 56 27 1 131 186 325 379 7.99e-11 60.8
MS.gene58106.t1 MTR_8g019710 51.111 45 22 0 136 180 52 96 8.43e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58106.t1 AT1G49230 49.171 181 79 3 11 191 17 184 3.10e-55 175
MS.gene58106.t1 AT1G49220 47.739 199 77 5 21 207 23 206 1.73e-54 174
MS.gene58106.t1 AT1G49210 46.445 211 95 5 8 210 10 210 3.97e-54 172
MS.gene58106.t1 AT1G49200 45.685 197 89 5 21 209 24 210 3.04e-52 168
MS.gene58106.t1 AT3G18773 45.213 188 87 4 6 190 8 182 3.97e-48 157
MS.gene58106.t1 AT5G05280 48.026 152 69 3 46 194 25 169 4.84e-44 145
MS.gene58106.t1 AT3G10910 47.059 153 72 4 38 184 11 160 3.07e-42 141
MS.gene58106.t1 AT1G76410 44.828 145 76 2 44 186 10 152 3.22e-37 128
MS.gene58106.t1 AT1G20823 41.111 180 74 5 11 184 4 157 6.17e-36 125
MS.gene58106.t1 AT2G17450 41.353 133 60 3 59 183 25 147 1.41e-29 108
MS.gene58106.t1 AT5G01880 41.143 175 79 5 12 185 1 152 4.23e-29 106
MS.gene58106.t1 AT4G35480 38.028 142 67 4 59 184 23 159 1.83e-27 103
MS.gene58106.t1 AT5G47610 34.000 150 83 3 46 195 31 164 7.23e-27 101
MS.gene58106.t1 AT4G17245 39.200 125 64 3 57 180 32 145 1.52e-25 97.8
MS.gene58106.t1 AT4G09110 34.400 125 75 3 58 180 46 165 7.23e-19 83.2
MS.gene58106.t1 AT4G17905 35.252 139 67 4 62 180 62 197 1.63e-18 82.4
MS.gene58106.t1 AT1G72310 47.436 78 39 1 107 184 98 173 1.88e-18 82.4
MS.gene58106.t1 AT4G17905 35.252 139 67 4 62 180 88 223 1.93e-18 82.4
MS.gene58106.t1 AT4G09120 35.246 122 73 2 64 183 51 168 2.93e-18 82.0
MS.gene58106.t1 AT4G40070 33.113 151 94 4 65 210 49 197 3.80e-18 81.3
MS.gene58106.t1 AT1G53820 42.553 94 47 4 107 197 91 180 7.38e-18 80.5
MS.gene58106.t1 AT1G74410 41.237 97 53 2 87 183 129 221 7.71e-18 79.0
MS.gene58106.t1 AT1G23980 33.566 143 75 4 60 184 50 190 1.10e-17 80.5
MS.gene58106.t1 AT1G72200 32.331 133 85 3 57 184 58 190 1.50e-17 80.5
MS.gene58106.t1 AT3G05200 32.394 142 90 3 60 197 46 185 1.55e-17 80.5
MS.gene58106.t1 AT2G35000 34.559 136 74 4 61 184 49 181 1.65e-17 80.1
MS.gene58106.t1 AT4G15975 33.058 121 78 2 87 207 27 144 5.97e-17 77.0
MS.gene58106.t1 AT3G11110 35.211 142 84 3 41 180 14 149 7.05e-17 75.1
MS.gene58106.t1 AT1G04360 31.544 149 84 4 45 180 33 176 7.17e-17 78.6
MS.gene58106.t1 AT1G22500 30.597 134 90 2 54 184 31 164 8.64e-17 78.2
MS.gene58106.t1 AT3G14320 44.186 86 42 3 111 192 63 146 1.29e-16 75.5
MS.gene58106.t1 AT5G07040 29.104 134 81 3 52 181 14 137 1.53e-16 73.9
MS.gene58106.t1 AT3G03550 64.444 45 16 0 136 180 157 201 1.97e-16 77.0
MS.gene58106.t1 AT3G16720 40.476 84 47 2 107 190 90 170 2.35e-16 76.3
MS.gene58106.t1 AT4G10160 33.071 127 74 4 63 184 23 143 2.61e-16 75.1
MS.gene58106.t1 AT1G35330 32.308 130 76 4 63 183 48 174 2.65e-16 76.3
MS.gene58106.t1 AT5G57750 40.000 75 45 0 107 181 91 165 4.61e-16 73.9
MS.gene58106.t1 AT2G20030 47.143 70 36 1 111 180 98 166 4.76e-16 76.3
MS.gene58106.t1 AT5G27420 28.000 150 87 4 65 211 53 184 5.72e-16 75.9
MS.gene58106.t1 AT2G18650 41.975 81 47 0 107 187 95 175 6.19e-16 75.9
MS.gene58106.t1 AT5G17600 62.222 45 17 0 136 180 140 184 6.74e-16 75.5
MS.gene58106.t1 AT4G09130 38.202 89 53 1 94 180 74 162 6.82e-16 75.5
MS.gene58106.t1 AT2G27940 36.782 87 53 1 105 191 109 193 8.05e-16 73.9
MS.gene58106.t1 AT5G66070 38.462 91 51 2 94 183 135 221 2.26e-15 72.4
MS.gene58106.t1 AT5G66070 38.462 91 51 2 94 183 135 221 2.26e-15 72.4
MS.gene58106.t1 AT2G34990 30.469 128 82 3 60 180 33 160 2.32e-15 73.6
MS.gene58106.t1 AT4G09100 39.744 78 45 2 105 180 50 127 2.57e-15 70.1
MS.gene58106.t1 AT2G34990 30.469 128 82 3 60 180 11 138 2.58e-15 73.2
MS.gene58106.t1 AT2G46494 27.604 192 116 6 2 180 177 358 2.67e-15 73.9
MS.gene58106.t1 AT4G28890 43.662 71 39 1 111 181 97 166 2.67e-15 73.9
MS.gene58106.t1 AT5G66070 38.462 91 51 2 94 183 159 245 3.00e-15 72.4
MS.gene58106.t1 AT4G30400 40.260 77 46 0 104 180 100 176 3.79e-15 73.6
MS.gene58106.t1 AT3G48030 37.662 77 48 0 107 183 98 174 4.52e-15 72.4
MS.gene58106.t1 AT3G62690 36.957 92 48 2 112 203 88 169 4.89e-15 72.0
MS.gene58106.t1 AT2G47560 38.554 83 50 1 109 190 78 160 6.10e-15 71.2
MS.gene58106.t1 AT1G28040 41.333 75 43 1 107 180 221 295 7.08e-15 72.0
MS.gene58106.t1 AT3G48030 37.662 77 48 0 107 183 176 252 7.16e-15 72.4
MS.gene58106.t1 AT5G05810 45.833 72 38 1 109 180 118 188 9.94e-15 72.4
MS.gene58106.t1 AT5G53110 40.845 71 41 1 111 180 302 372 1.26e-14 72.0
MS.gene58106.t1 AT4G10150 29.134 127 87 2 58 184 34 157 1.53e-14 70.5
MS.gene58106.t1 AT2G35910 34.831 89 57 1 111 199 121 208 1.55e-14 70.1
MS.gene58106.t1 AT1G72220 28.889 135 70 4 65 180 92 219 2.11e-14 71.6
MS.gene58106.t1 AT5G42200 39.189 74 44 1 107 180 74 146 2.61e-14 68.2
MS.gene58106.t1 AT4G33565 42.254 71 39 1 136 204 215 285 3.37e-14 70.9
MS.gene58106.t1 AT5G43420 30.070 143 76 3 62 180 38 180 9.84e-14 69.3
MS.gene58106.t1 AT2G25410 44.444 72 38 1 111 180 298 369 1.15e-13 69.3
MS.gene58106.t1 AT4G17920 28.906 128 85 2 62 183 28 155 1.33e-13 68.6
MS.gene58106.t1 AT5G10380 40.000 80 45 2 106 184 104 181 1.54e-13 68.6
MS.gene58106.t1 AT2G37580 38.462 78 43 1 103 180 112 184 2.12e-13 67.0
MS.gene58106.t1 AT5G06490 33.333 102 52 2 111 206 96 187 2.20e-13 66.6
MS.gene58106.t1 AT3G19140 34.545 110 69 2 73 181 15 122 2.44e-13 65.1
MS.gene58106.t1 AT1G33480 33.784 74 47 1 111 184 75 146 2.56e-13 67.4
MS.gene58106.t1 AT1G32361 35.577 104 58 4 84 183 101 199 3.19e-13 67.8
MS.gene58106.t1 AT2G46493 31.683 101 63 2 86 180 80 180 3.76e-13 65.5
MS.gene58106.t1 AT5G40250 50.000 48 24 0 137 184 142 189 5.51e-13 67.4
MS.gene58106.t1 AT5G58580 36.842 76 48 0 109 184 109 184 5.89e-13 66.6
MS.gene58106.t1 AT2G46160 31.068 103 58 2 111 206 104 200 8.62e-13 65.1
MS.gene58106.t1 AT2G46160 31.068 103 58 2 111 206 104 200 8.62e-13 65.1
MS.gene58106.t1 AT3G18930 33.735 83 46 2 111 184 120 202 9.78e-13 66.6
MS.gene58106.t1 AT3G18930 33.735 83 46 2 111 184 120 202 9.78e-13 66.6
MS.gene58106.t1 AT3G18930 33.735 83 46 2 111 184 120 202 9.78e-13 66.6
MS.gene58106.t1 AT3G61550 41.667 72 36 1 135 206 133 198 1.43e-12 64.7
MS.gene58106.t1 AT2G35420 38.889 72 43 1 109 180 75 145 1.45e-12 65.1
MS.gene58106.t1 AT5G36001 55.319 47 21 0 135 181 261 307 2.28e-12 65.1
MS.gene58106.t1 AT1G12760 38.043 92 51 2 95 186 244 329 3.17e-12 64.7
MS.gene58106.t1 AT1G12760 40.698 86 45 2 101 186 321 400 3.26e-12 65.1
MS.gene58106.t1 AT4G35840 37.333 75 45 1 109 181 160 234 3.59e-12 63.9
MS.gene58106.t1 AT2G17730 36.000 75 46 1 109 181 165 239 3.88e-12 63.9
MS.gene58106.t1 AT4G26400 31.902 163 69 6 18 180 162 282 3.96e-12 64.7
MS.gene58106.t1 AT4G26400 31.902 163 69 6 18 180 162 282 3.96e-12 64.7
MS.gene58106.t1 AT3G61180 47.826 69 35 1 127 195 312 379 4.05e-12 64.7
MS.gene58106.t1 AT2G18670 36.000 75 48 0 106 180 78 152 4.36e-12 62.8
MS.gene58106.t1 AT2G46495 38.158 76 45 1 107 180 287 362 5.11e-12 64.3
MS.gene58106.t1 AT2G46495 38.158 76 45 1 107 180 259 334 5.74e-12 64.3
MS.gene58106.t1 AT3G20395 36.486 74 44 1 110 183 146 216 6.78e-12 62.8
MS.gene58106.t1 AT5G20910 38.298 94 49 3 104 189 188 280 1.03e-11 63.2
MS.gene58106.t1 AT1G35625 25.625 160 108 4 52 210 156 305 1.11e-11 63.2
MS.gene58106.t1 AT5G46650 25.157 159 104 3 40 183 2 160 1.57e-11 62.4
MS.gene58106.t1 AT1G53010 36.364 99 51 4 99 186 81 178 1.83e-11 60.8
MS.gene58106.t1 AT4G24015 37.209 86 52 1 95 180 64 147 2.08e-11 60.8
MS.gene58106.t1 AT2G03000 45.455 55 26 2 136 187 479 532 3.06e-11 62.4
MS.gene58106.t1 AT4G11680 45.070 71 33 2 110 180 315 379 6.39e-11 61.2
MS.gene58106.t1 AT1G63170 45.588 68 36 1 128 195 315 381 6.66e-11 61.2
MS.gene58106.t1 AT2G01735 46.667 60 31 1 126 185 295 353 8.69e-11 60.8

Find 35 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATCCTTATAATAATTTC+TGG 0.224435 4.2:-9461061 None:intergenic
TGAAAACCATGGTTGCATTT+AGG 0.231625 4.2:-9460917 None:intergenic
CTTGAAACCTTTCAGAAGAT+TGG 0.273789 4.2:+9461004 MS.gene58106:CDS
AATTCAACTGACTCGAATTT+CGG 0.321646 4.2:+9460593 MS.gene58106:CDS
AACAAATAAAAGCACATAAT+AGG 0.334256 4.2:-9460658 None:intergenic
CAACAATGATTTACCTCAAT+TGG 0.338525 4.2:+9460754 MS.gene58106:CDS
CAGTGCCAGAAATTATTATA+AGG 0.354379 4.2:+9461056 MS.gene58106:CDS
CTAAGTGATTGTTGAACAAC+TGG 0.363841 4.2:-9460539 None:intergenic
ATTGTTGAACAACTGGATTT+TGG 0.369165 4.2:-9460532 None:intergenic
CCATCATAAGGTGTGCCTTA+AGG 0.403267 4.2:+9460696 MS.gene58106:CDS
TCTGGCACTGGCAAGACAAT+TGG 0.407241 4.2:-9461043 None:intergenic
CGGAGTTCGTGAATTTGATT+CGG 0.410866 4.2:+9460613 MS.gene58106:CDS
ATGTTCGTTGCGTTGACAAA+TGG 0.425384 4.2:+9460939 MS.gene58106:CDS
ATTCCTTTGTTGACCAATTG+AGG 0.425870 4.2:-9460767 None:intergenic
TTGCATTAAACTCCATCATA+AGG 0.439676 4.2:+9460684 MS.gene58106:CDS
ATTGTTGTTTGAAATCCTTA+AGG 0.455026 4.2:-9460711 None:intergenic
CTTATAATAATTTCTGGCAC+TGG 0.463572 4.2:-9461055 None:intergenic
AGAAGACATTGTCTACACTT+TGG 0.476895 4.2:-9460983 None:intergenic
TTGCGTTGACAAATGGCTAA+AGG 0.505267 4.2:+9460946 MS.gene58106:CDS
TCAGAAGATTGGTGGGTCGC+AGG 0.506591 4.2:+9461015 MS.gene58106:CDS
TTGTGGAATCTCACACAAGA+AGG 0.511006 4.2:+9460501 MS.gene58106:CDS
CCTTAAGGCACACCTTATGA+TGG 0.511412 4.2:-9460696 None:intergenic
GAAACCTTTCAGAAGATTGG+TGG 0.524189 4.2:+9461007 MS.gene58106:CDS
ACTTCTCCATGAGCTTCTTG+TGG 0.539026 4.2:+9460484 MS.gene58106:CDS
TCAGTTGAATGGATAACTAC+AGG 0.541493 4.2:-9460815 None:intergenic
ATACATTCTGCATCTAAACT+TGG 0.551257 4.2:-9460848 None:intergenic
CGACCCACCAATCTTCTGAA+AGG 0.561113 4.2:-9461011 None:intergenic
AAACCTTTCAGAAGATTGGT+GGG 0.577270 4.2:+9461008 MS.gene58106:CDS
ATGGAGAAGTGGTGAAGCAA+AGG 0.582322 4.2:-9460471 None:intergenic
GAGATTCCACAAGAAGCTCA+TGG 0.584576 4.2:-9460490 None:intergenic
TGTCTCTCAGAGTTCACAAA+GGG 0.586259 4.2:+9460875 MS.gene58106:CDS
TTACCTCAATTGGTCAACAA+AGG 0.600264 4.2:+9460764 MS.gene58106:CDS
ACAAGAAGCTCATGGAGAAG+TGG 0.600282 4.2:-9460482 None:intergenic
CGCAACGAACATGAAAACCA+TGG 0.672850 4.2:-9460928 None:intergenic
ATGTCTCTCAGAGTTCACAA+AGG 0.686490 4.2:+9460874 MS.gene58106:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAAATAAAAGCACATAAT+AGG - chr4.2:9460661-9460680 None:intergenic 20.0%
! TGGATCCTTATAATAATTTC+TGG - chr4.2:9461064-9461083 None:intergenic 25.0%
!!! ATTGTTGTTTGAAATCCTTA+AGG - chr4.2:9460714-9460733 None:intergenic 25.0%
!!! TGTTTTTGTTTGTGAAAACA+GGG - chr4.2:9460574-9460593 None:intergenic 25.0%
!!! TTGTTTTTGTTTGTGAAAAC+AGG - chr4.2:9460575-9460594 None:intergenic 25.0%
ATACATTCTGCATCTAAACT+TGG - chr4.2:9460851-9460870 None:intergenic 30.0%
CAACAATGATTTACCTCAAT+TGG + chr4.2:9460754-9460773 MS.gene58106:CDS 30.0%
CAGTGCCAGAAATTATTATA+AGG + chr4.2:9461056-9461075 MS.gene58106:CDS 30.0%
TTGCATTAAACTCCATCATA+AGG + chr4.2:9460684-9460703 MS.gene58106:CDS 30.0%
! ATTGTTGAACAACTGGATTT+TGG - chr4.2:9460535-9460554 None:intergenic 30.0%
! ATTTTACCTAAATGCAACCA+TGG + chr4.2:9460911-9460930 MS.gene58106:CDS 30.0%
!! AATTCAACTGACTCGAATTT+CGG + chr4.2:9460593-9460612 MS.gene58106:CDS 30.0%
!! CTTATAATAATTTCTGGCAC+TGG - chr4.2:9461058-9461077 None:intergenic 30.0%
!! GTTTTTGTTTGTGAAAACAG+GGG - chr4.2:9460573-9460592 None:intergenic 30.0%
!!! GTAGTTTTAACTCAGTTGAA+TGG - chr4.2:9460829-9460848 None:intergenic 30.0%
AAACCTTTCAGAAGATTGGT+GGG + chr4.2:9461008-9461027 MS.gene58106:CDS 35.0%
AGAAGACATTGTCTACACTT+TGG - chr4.2:9460986-9461005 None:intergenic 35.0%
ATTCCTTTGTTGACCAATTG+AGG - chr4.2:9460770-9460789 None:intergenic 35.0%
CTAAGTGATTGTTGAACAAC+TGG - chr4.2:9460542-9460561 None:intergenic 35.0%
CTTGAAACCTTTCAGAAGAT+TGG + chr4.2:9461004-9461023 MS.gene58106:CDS 35.0%
TCAGTTGAATGGATAACTAC+AGG - chr4.2:9460818-9460837 None:intergenic 35.0%
TGAAAACCATGGTTGCATTT+AGG - chr4.2:9460920-9460939 None:intergenic 35.0%
TTACCTCAATTGGTCAACAA+AGG + chr4.2:9460764-9460783 MS.gene58106:CDS 35.0%
ATGTCTCTCAGAGTTCACAA+AGG + chr4.2:9460874-9460893 MS.gene58106:CDS 40.0%
CGGAGTTCGTGAATTTGATT+CGG + chr4.2:9460613-9460632 MS.gene58106:CDS 40.0%
GAAACCTTTCAGAAGATTGG+TGG + chr4.2:9461007-9461026 MS.gene58106:CDS 40.0%
TGTCTCTCAGAGTTCACAAA+GGG + chr4.2:9460875-9460894 MS.gene58106:CDS 40.0%
TTGTGGAATCTCACACAAGA+AGG + chr4.2:9460501-9460520 MS.gene58106:CDS 40.0%
! ATGTTCGTTGCGTTGACAAA+TGG + chr4.2:9460939-9460958 MS.gene58106:CDS 40.0%
! TTGCGTTGACAAATGGCTAA+AGG + chr4.2:9460946-9460965 MS.gene58106:CDS 40.0%
ACAAGAAGCTCATGGAGAAG+TGG - chr4.2:9460485-9460504 None:intergenic 45.0%
ACTTCTCCATGAGCTTCTTG+TGG + chr4.2:9460484-9460503 MS.gene58106:CDS 45.0%
ATGGAGAAGTGGTGAAGCAA+AGG - chr4.2:9460474-9460493 None:intergenic 45.0%
CCATCATAAGGTGTGCCTTA+AGG + chr4.2:9460696-9460715 MS.gene58106:CDS 45.0%
CCTTAAGGCACACCTTATGA+TGG - chr4.2:9460699-9460718 None:intergenic 45.0%
CGCAACGAACATGAAAACCA+TGG - chr4.2:9460931-9460950 None:intergenic 45.0%
GAGATTCCACAAGAAGCTCA+TGG - chr4.2:9460493-9460512 None:intergenic 45.0%
CGACCCACCAATCTTCTGAA+AGG - chr4.2:9461014-9461033 None:intergenic 50.0%
!! TCTGGCACTGGCAAGACAAT+TGG - chr4.2:9461046-9461065 None:intergenic 50.0%
! TCAGAAGATTGGTGGGTCGC+AGG + chr4.2:9461015-9461034 MS.gene58106:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 9460455 9461090 9460455 ID=MS.gene58106
chr4.2 mRNA 9460455 9461090 9460455 ID=MS.gene58106.t1;Parent=MS.gene58106
chr4.2 exon 9460455 9461090 9460455 ID=MS.gene58106.t1.exon1;Parent=MS.gene58106.t1
chr4.2 CDS 9460455 9461090 9460455 ID=cds.MS.gene58106.t1;Parent=MS.gene58106.t1
Gene Sequence

>MS.gene58106

ATGTATGCTTCTACTTCCTTTGCTTCACCACTTCTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAAAATCCAGTTGTTCAACAATCACTTAGAATCAACTCCCCTGTTTTCACAAACAAAAACAATTCAACTGACTCGAATTTCGGAGTTCGTGAATTTGATTCGGATGTTGTGCTGATAATTGCAGTCCTATTATGTGCTTTTATTTGTTTACTTGCATTAAACTCCATCATAAGGTGTGCCTTAAGGATTTCAAACAACAATGAATCTTCTTCGAGTTCAAGCAACAATGATTTACCTCAATTGGTCAACAAAGGAATAAAGAAGAAAGCTCTCAAGAAATTTCCTGTAGTTATCCATTCAACTGAGTTAAAACTACCAAGTTTAGATGCAGAATGTATGATATGTCTCTCAGAGTTCACAAAGGGTGAAAAATTGCGCATTTTACCTAAATGCAACCATGGTTTTCATGTTCGTTGCGTTGACAAATGGCTAAAGGAACACTCATCATGTCCAAAGTGTAGACAATGTCTTCTTGAAACCTTTCAGAAGATTGGTGGGTCGCAGGTGCAACCAATTGTCTTGCCAGTGCCAGAAATTATTATAAGGATCCAAATGTAA
Protein sequence

>MS.gene58106.t1

MYASTSFASPLLHELLVESHTRRLLFQNPVVQQSLRINSPVFTNKNNSTDSNFGVREFDSDVVLIIAVLLCAFICLLALNSIIRCALRISNNNESSSSSSNNDLPQLVNKGIKKKALKKFPVVIHSTELKLPSLDAECMICLSEFTKGEKLRILPKCNHGFHVRCVDKWLKEHSSCPKCRQCLLETFQKIGGSQVQPIVLPVPEIIIRIQM