AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47052

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47052.t1 MTR_6g021800 100.000 447 0 0 1 447 1 447 0.0 918
MS.gene47052.t1 MTR_6g021805 100.000 447 0 0 1 447 1 447 0.0 918
MS.gene47052.t1 MTR_1g495705 96.652 448 14 1 1 447 1 448 0.0 895
MS.gene47052.t1 MTR_1g095650 96.652 448 14 1 1 447 1 448 0.0 895
MS.gene47052.t1 MTR_1g095703 96.429 448 15 1 1 447 1 448 0.0 895
MS.gene47052.t1 MTR_4g014810 95.302 447 21 0 1 447 1 447 0.0 891
MS.gene47052.t1 MTR_1g013680 95.227 440 18 1 1 437 1 440 0.0 865
MS.gene47052.t1 MTR_1g085410 81.336 434 81 0 1 434 1 434 0.0 739
MS.gene47052.t1 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 726
MS.gene47052.t1 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 724
MS.gene47052.t1 MTR_1g024175 78.802 434 92 0 1 434 1 434 0.0 724
MS.gene47052.t1 MTR_8g014590 77.951 449 96 2 1 446 1 449 0.0 713
MS.gene47052.t1 MTR_1g095650 95.965 347 13 1 102 447 1 347 0.0 688
MS.gene47052.t1 MTR_2g082730 70.682 440 112 2 1 438 1 425 0.0 639
MS.gene47052.t1 MTR_5g037350 66.383 470 121 1 3 435 13 482 0.0 629
MS.gene47052.t1 MTR_1g089520 69.406 438 116 3 4 440 5 425 0.0 623
MS.gene47052.t1 MTR_2g082665 65.682 440 108 2 1 438 1 399 0.0 581
MS.gene47052.t1 MTR_2g037420 63.053 452 121 4 1 447 1 411 0.0 558
MS.gene47052.t1 MTR_2g080210 64.368 435 119 4 1 432 1 402 0.0 549
MS.gene47052.t1 MTR_8g013910 63.029 449 131 5 1 433 1 430 0.0 546
MS.gene47052.t1 MTR_8g008740 78.154 325 70 1 1 324 1 325 0.0 538
MS.gene47052.t1 MTR_1g112460 64.094 298 65 4 155 446 1 262 3.93e-124 362
MS.gene47052.t1 MTR_1g495735 74.129 201 42 1 240 430 106 306 3.35e-99 299
MS.gene47052.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 4.80e-17 82.0
MS.gene47052.t1 MTR_6g080420 37.731 432 255 6 5 428 89 514 1.21e-96 300
MS.gene47052.t1 MTR_8g106700 37.731 432 259 6 4 429 49 476 1.45e-93 291
MS.gene47052.t1 MTR_8g106700 37.731 432 259 6 4 429 43 470 2.18e-93 290
MS.gene47052.t1 MTR_8g106700 37.731 432 259 6 4 429 70 497 4.03e-93 290
MS.gene47052.t1 MTR_8g087950 35.566 433 270 6 7 433 275 704 2.05e-90 289
MS.gene47052.t1 MTR_8g087950 35.566 433 270 6 7 433 348 777 1.09e-89 289
MS.gene47052.t1 MTR_1g101880 86.364 154 21 0 1 154 1 154 1.19e-89 273
MS.gene47052.t1 MTR_4g054970 55.372 242 79 4 193 431 50 265 2.03e-79 248
MS.gene47052.t1 MTR_4g054970 77.273 44 10 0 1 44 1 44 4.58e-13 69.7
MS.gene47052.t1 MTR_1g024165 81.884 138 25 0 8 145 12 149 1.95e-78 240
MS.gene47052.t1 MTR_8g014950 75.490 102 25 0 3 104 4 105 2.57e-47 158
MS.gene47052.t1 MTR_7g094460 30.227 440 243 14 3 429 59 447 1.67e-45 164
MS.gene47052.t1 MTR_7g098190 53.892 167 51 5 56 220 10 152 1.17e-42 149
MS.gene47052.t1 MTR_3g076660 30.631 444 247 15 3 429 88 487 5.23e-42 155
MS.gene47052.t1 MTR_2g021300 29.385 439 248 12 3 429 46 434 1.09e-41 153
MS.gene47052.t1 MTR_8g014960 62.195 82 31 0 213 294 2 83 2.88e-27 107
MS.gene47052.t1 MTR_3g097250 26.103 272 144 9 9 272 85 307 2.92e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47052.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47052.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47052.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47052.t1 AT1G07920 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47052.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47052.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47052.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47052.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47052.t1 AT1G07930 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47052.t1 AT1G07930 98.824 255 3 0 1 255 1 255 0.0 530
MS.gene47052.t1 AT1G07930 90.517 116 11 0 331 446 254 369 1.79e-68 223
MS.gene47052.t1 AT1G18070 37.412 425 258 5 5 424 99 520 6.59e-94 293
MS.gene47052.t1 AT1G18070 37.412 425 258 5 5 424 99 520 6.59e-94 293
MS.gene47052.t1 AT1G18070 36.697 436 257 6 5 424 99 531 1.04e-90 285
MS.gene47052.t1 AT5G10630 35.765 425 265 5 7 426 239 660 1.84e-90 288
MS.gene47052.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.88e-90 288
MS.gene47052.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.88e-90 288
MS.gene47052.t1 AT5G10630 35.765 425 265 5 7 426 310 731 9.81e-90 288
MS.gene47052.t1 AT5G10630 35.765 425 265 5 7 426 315 736 1.10e-89 288
MS.gene47052.t1 AT1G35550 77.885 104 23 0 335 438 1 104 5.60e-54 176
MS.gene47052.t1 AT4G20360 30.594 438 255 10 3 429 75 474 1.27e-44 162
MS.gene47052.t1 AT4G20360 30.594 438 255 10 3 429 75 474 1.27e-44 162
MS.gene47052.t1 AT4G02930 29.977 437 249 13 3 429 63 452 2.02e-44 161
MS.gene47052.t1 AT2G31060 25.000 264 160 8 9 263 61 295 1.60e-12 70.1
MS.gene47052.t1 AT2G31060 24.615 260 162 7 9 263 61 291 2.25e-11 66.6
MS.gene47052.t1 AT5G08650 27.037 270 144 10 9 272 88 310 2.46e-11 66.2
MS.gene47052.t1 AT5G08650 27.037 270 144 10 9 272 88 310 2.73e-11 66.2

Find 137 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGGTATGGTTGTGACTTT+TGG 0.190241 6.3:+15196044 MS.gene47052:CDS
GTTGTGACATTACTTCTTCT+TGG 0.266998 6.3:-15196591 None:intergenic
GCTCTCACTGAAGCTCTTCC+TGG 0.338571 6.3:+15196116 MS.gene47052:CDS
TTGCAAGATGTTTACAAGAT+TGG 0.346171 6.3:+15195972 MS.gene47052:CDS
TTCATCAAGAACATGATTAC+TGG 0.350652 6.3:+15195285 MS.gene47052:CDS
CATATCAACATTGTCGTCAT+TGG 0.354281 6.3:+15195012 MS.gene47052:CDS
GTTTACAAGATTGGTGGTAT+TGG 0.363154 6.3:+15195981 MS.gene47052:CDS
CTTCTTCTTGGCAGCAGCCT+TGG 0.371495 6.3:-15196579 None:intergenic
AAGTTGGCAGCTTCCTTGGC+AGG 0.382611 6.3:-15196221 None:intergenic
GCTCTTCTTGCATTTACTCT+TGG 0.389052 6.3:+15195402 MS.gene47052:CDS
AGTGAAGTTGGCAGCTTCCT+TGG 0.410082 6.3:-15196225 None:intergenic
ACCTGGCCTTCGAGTACTTA+GGG 0.418829 6.3:-15195737 None:intergenic
ACCAGATCGCCTGTCAATCT+TGG 0.419719 6.3:-15196354 None:intergenic
ATGCAAGAAGAGCGTGCTCC+CGG 0.422879 6.3:-15195392 None:intergenic
TTCCTTGGCAGGGTCATCCT+TGG 0.427055 6.3:-15196210 None:intergenic
GTTCCCATCTCCGGATTTGA+AGG 0.431146 6.3:+15195831 MS.gene47052:CDS
AAGCCTGAGGGGCTTGTCTG+TGG 0.432212 6.3:-15195946 None:intergenic
TCTGGAAAATCAACAACAAC+TGG 0.436226 6.3:+15195045 MS.gene47052:CDS
AGCCTGAGGGGCTTGTCTGT+GGG 0.440652 6.3:-15195945 None:intergenic
ATGGGTTCTTGACAAACTTA+AGG 0.442151 6.3:+15195164 MS.gene47052:CDS
CATGTTGTCACCTTCAAATC+CGG 0.442623 6.3:-15195841 None:intergenic
TATCCGTTTCCGATCTGTCC+AGG 0.445786 6.3:-15196272 None:intergenic
CCGGTCTCAACACGTCCAAC+TGG 0.449484 6.3:-15196011 None:intergenic
ATTCCCTTCGTTCCCATCTC+CGG 0.450165 6.3:+15195822 MS.gene47052:CDS
GGCAGGGTCATCCTTGGAGT+TGG 0.452433 6.3:-15196204 None:intergenic
CTTATCATTGACTCCACCAC+TGG 0.461752 6.3:+15195333 MS.gene47052:CDS
GGTCTCAACCACCATGGGCT+TGG 0.466910 6.3:-15196444 None:intergenic
CTCAACCACCATGGGCTTGG+TGG 0.468734 6.3:-15196441 None:intergenic
ACCAAGATTGACAGGCGATC+TGG 0.474566 6.3:+15196353 MS.gene47052:CDS
CAAGATGTTTACAAGATTGG+TGG 0.475647 6.3:+15195975 MS.gene47052:CDS
TAAGAACAGCACAATCAGCC+TGG 0.478298 6.3:-15195314 None:intergenic
CTTCACGATTTCATCGTACC+TGG 0.484982 6.3:-15195754 None:intergenic
CTTAAGGCTGAGCGTGAAAG+AGG 0.490014 6.3:+15195180 MS.gene47052:CDS
GTCATTGGACATGTCGACTC+TGG 0.490675 6.3:+15195027 MS.gene47052:CDS
CACCCTGGACAGATCGGAAA+CGG 0.491987 6.3:+15196269 MS.gene47052:CDS
GTCACCTTCAAATCCGGAGA+TGG 0.495769 6.3:-15195835 None:intergenic
AGTTTCATCCTACTTGAAGA+AGG 0.496964 6.3:+15195779 MS.gene47052:CDS
TCCAAAAGTCACAACCATAC+CGG 0.497778 6.3:-15196045 None:intergenic
CATCAAGGCTGTGGAGAAGA+AGG 0.501366 6.3:+15196535 MS.gene47052:CDS
CACCAACCTTGACTGGTACA+AGG 0.502465 6.3:+15195875 MS.gene47052:CDS
TCATCCTACTTGAAGAAGGT+TGG 0.505639 6.3:+15195783 MS.gene47052:CDS
AACTTGTTACCAAGATTGAC+AGG 0.511236 6.3:+15196345 MS.gene47052:CDS
GACCCACAGACAAGCCCCTC+AGG 0.513546 6.3:+15195943 MS.gene47052:CDS
GAGCCTAAGTTCTTGAAGAA+TGG 0.517492 6.3:+15196392 MS.gene47052:CDS
GATTGACAGGCGATCTGGTA+AGG 0.518046 6.3:+15196358 MS.gene47052:CDS
CTTGTACCAGTCAAGGTTGG+TGG 0.518944 6.3:-15195874 None:intergenic
TACCTGGCCTTCGAGTACTT+AGG 0.520657 6.3:-15195738 None:intergenic
ATCATTGACTCCACCACTGG+TGG 0.521304 6.3:+15195336 MS.gene47052:CDS
AGAGGTCCACCAACCTTGAC+TGG 0.523105 6.3:+15195868 MS.gene47052:CDS
TCACCATTCTTCAAGAACTT+AGG 0.524504 6.3:-15196395 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.529820 6.3:-15196440 None:intergenic
AGCGTTCATTCAAGTACGCA+TGG 0.534658 6.3:+15195145 MS.gene47052:CDS
GTGGAGAAGAAGGATCCTAC+TGG 0.535855 6.3:+15196545 MS.gene47052:CDS
CCAAAAGTCACAACCATACC+GGG 0.540748 6.3:-15196044 None:intergenic
GATGACTTGGGAAGTGAAGT+TGG 0.546093 6.3:-15196237 None:intergenic
TCCCTTGTACCAGTCAAGGT+TGG 0.546130 6.3:-15195877 None:intergenic
CGGTATTGTGAAGCCCGGTA+TGG 0.551104 6.3:+15196031 MS.gene47052:CDS
GAAGGATCCTACTGGAGCTA+AGG 0.552001 6.3:+15196553 MS.gene47052:CDS
CCCCTAAGTACTCGAAGGCC+AGG 0.553487 6.3:+15195736 MS.gene47052:CDS
TTCTTGAAGAATGGTGATGC+TGG 0.554703 6.3:+15196401 MS.gene47052:CDS
TGCACAGTCATTGATGCACC+TGG 0.556287 6.3:+15195252 MS.gene47052:CDS
ATCTTGCAATGGAAGCCTGA+GGG 0.556985 6.3:-15195958 None:intergenic
TGTTGCTGTTGGTGTCATCA+AGG 0.557300 6.3:+15196520 MS.gene47052:CDS
TCACCTTCAAATCCGGAGAT+GGG 0.557788 6.3:-15195834 None:intergenic
CATACCGGGCTTCACAATAC+CGG 0.558131 6.3:-15196030 None:intergenic
ACCAACCTTGACTGGTACAA+GGG 0.559612 6.3:+15195876 MS.gene47052:CDS
TTGATGAAATCACGATGTCC+AGG 0.561637 6.3:-15195270 None:intergenic
GTAACCAACCTTCTTCAAGT+AGG 0.562921 6.3:-15195787 None:intergenic
GCGAAGGTCTCAACCACCAT+GGG 0.563446 6.3:-15196449 None:intergenic
AGTTGGCAGCTTCCTTGGCA+GGG 0.564600 6.3:-15196220 None:intergenic
GGTGGTTCATGATGATGACT+TGG 0.569890 6.3:-15196250 None:intergenic
AGCTTCAAAACCACCAGTGG+TGG 0.571917 6.3:-15195346 None:intergenic
TTGAATCCGACATTGTCTCC+AGG 0.572548 6.3:-15196134 None:intergenic
TTGGTCCCTTGTACCAGTCA+AGG 0.575920 6.3:-15195881 None:intergenic
AACTTCAGTTGTCAATCCAG+TGG 0.577026 6.3:-15196069 None:intergenic
GACTGTGCAGTAGTACTTGG+TGG 0.578462 6.3:-15195238 None:intergenic
TGCAAGAAGAGCGTGCTCCC+GGG 0.579779 6.3:-15195391 None:intergenic
TGTTAAGAATGTTGCTGTGA+AGG 0.579878 6.3:+15196157 MS.gene47052:CDS
ATGAACCACCCTGGACAGAT+CGG 0.581582 6.3:+15196263 MS.gene47052:CDS
CATGATTACTGGAACCTCCC+AGG 0.581850 6.3:+15195296 MS.gene47052:CDS
TCAAGAGCCTCAAGAAGAGT+TGG 0.584894 6.3:-15195900 None:intergenic
ATCCGTTTCCGATCTGTCCA+GGG 0.587827 6.3:-15196271 None:intergenic
TTCGCTGAATATCCTCCACT+TGG 0.588646 6.3:+15196467 MS.gene47052:CDS
TCTCTAAGGATGGACAGACC+CGG 0.591170 6.3:+15195373 MS.gene47052:CDS
AATGACTGTGCAGTAGTACT+TGG 0.591989 6.3:-15195241 None:intergenic
GAAGCTGGTATCTCTAAGGA+TGG 0.592030 6.3:+15195363 MS.gene47052:CDS
CCAGTTGGACGTGTTGAGAC+CGG 0.592088 6.3:+15196011 MS.gene47052:CDS
ATCTTGTAAACATCTTGCAA+TGG 0.592677 6.3:-15195969 None:intergenic
GCTCTTCCTGGAGACAATGT+CGG 0.592772 6.3:+15196128 MS.gene47052:CDS
ACTTCAGTTGTCAATCCAGT+GGG 0.599610 6.3:-15196068 None:intergenic
GAGGTGTGGCAATCAAGCAC+TGG 0.600600 6.3:-15196299 None:intergenic
GGTCACTTGATCTACAAGCT+AGG 0.604596 6.3:+15195066 MS.gene47052:CDS
CTCTAAGGATGGACAGACCC+GGG 0.605309 6.3:+15195374 MS.gene47052:CDS
TTTCCACAAGGCAATATCGA+TGG 0.606438 6.3:-15195208 None:intergenic
AAGAACAGCACAATCAGCCT+GGG 0.607202 6.3:-15195313 None:intergenic
TGTTGGTGTCATCAAGGCTG+TGG 0.608422 6.3:+15196526 MS.gene47052:CDS
AAATCCGGAGATGGGAACGA+AGG 0.610633 6.3:-15195826 None:intergenic
GATGGTTCCCACCAAGCCCA+TGG 0.611182 6.3:+15196433 MS.gene47052:CDS
AATCCGGAGATGGGAACGAA+GGG 0.611560 6.3:-15195825 None:intergenic
GCGTTCATTCAAGTACGCAT+GGG 0.615188 6.3:+15195146 MS.gene47052:CDS
CTCCAAGGATGACCCTGCCA+AGG 0.619064 6.3:+15196208 MS.gene47052:CDS
TTTCGTTGCATCCAACTCCA+AGG 0.619372 6.3:+15196193 MS.gene47052:CDS
ATGCGTCAAACTGTTGCTGT+TGG 0.619748 6.3:+15196509 MS.gene47052:CDS
AGCGAAGGTCTCAACCACCA+TGG 0.623872 6.3:-15196450 None:intergenic
AAGGTGACAACATGATTGAG+AGG 0.624581 6.3:+15195850 MS.gene47052:CDS
GAGACCGGTATTGTGAAGCC+CGG 0.625104 6.3:+15196026 MS.gene47052:CDS
TCTTGCAATGGAAGCCTGAG+GGG 0.631058 6.3:-15195957 None:intergenic
CAAGGGACCAACTCTTCTTG+AGG 0.634066 6.3:+15195893 MS.gene47052:CDS
ATCTGGTAAGGAGATTGAGA+AGG 0.634092 6.3:+15196370 MS.gene47052:CDS
GATGATCTGTTGTTGTAACA+AGG 0.635291 6.3:+15195434 MS.gene47052:CDS
GTCATCATCATGAACCACCC+TGG 0.635348 6.3:+15196254 MS.gene47052:CDS
TGATGCTGGTATCATTAAGA+TGG 0.636151 6.3:+15196415 MS.gene47052:CDS
TGTGATCGAGAGATTCGAGA+AGG 0.638590 6.3:+15195104 MS.gene47052:CDS
CCTGGCCTTCGAGTACTTAG+GGG 0.644615 6.3:-15195736 None:intergenic
CACTTGATCTACAAGCTAGG+AGG 0.645428 6.3:+15195069 MS.gene47052:CDS
TTACCATCGATATTGCCTTG+TGG 0.647445 6.3:+15195205 MS.gene47052:CDS
TACTGGAGCTAAGGTCACCA+AGG 0.647527 6.3:+15196562 MS.gene47052:CDS
GGTATTGGAACTGTGCCAGT+TGG 0.649080 6.3:+15195996 MS.gene47052:CDS
AAACTTCACAGCAATGTGAG+AGG 0.653594 6.3:-15196318 None:intergenic
AACAGCACAATCAGCCTGGG+AGG 0.653730 6.3:-15195310 None:intergenic
CATCTTGCAATGGAAGCCTG+AGG 0.654491 6.3:-15195959 None:intergenic
ACAGCAAAACGTCCAAGTGG+AGG 0.656142 6.3:-15196479 None:intergenic
GGCCTTCGAGTACTTAGGGG+TGG 0.657553 6.3:-15195733 None:intergenic
CAGGTACGATGAAATCGTGA+AGG 0.661162 6.3:+15195755 MS.gene47052:CDS
TTGGTGACCTTAGCTCCAGT+AGG 0.661771 6.3:-15196560 None:intergenic
ACCAGCTTCAAAACCACCAG+TGG 0.669846 6.3:-15195349 None:intergenic
TCACAGCAATGTGAGAGGTG+TGG 0.670228 6.3:-15196313 None:intergenic
AAGTGGAGGATATTCAGCGA+AGG 0.673733 6.3:-15196465 None:intergenic
CGTTTCCGATCTGTCCAGGG+TGG 0.684114 6.3:-15196268 None:intergenic
CTGACAGCAAAACGTCCAAG+TGG 0.689307 6.3:-15196482 None:intergenic
GTGGTTCATGATGATGACTT+GGG 0.690284 6.3:-15196249 None:intergenic
TACCACCCCTAAGTACTCGA+AGG 0.691722 6.3:+15195731 MS.gene47052:CDS
GGTGGTCTCAAATTTCCACA+AGG 0.697133 6.3:-15195220 None:intergenic
GTCTGTTGAGATGCACCACG+AGG 0.705830 6.3:+15196094 MS.gene47052:CDS
GCTGTGAAGGATCTCAAGCG+TGG 0.706441 6.3:+15196170 MS.gene47052:CDS
GGTTCCCACCAAGCCCATGG+TGG 0.716413 6.3:+15196436 MS.gene47052:CDS
GAGCTTCAGTGAGAGCCTCG+TGG 0.728674 6.3:-15196109 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAATATTTTGTTTCAGA+TGG + chr6.3:15195704-15195723 MS.gene47052:intron 20.0%
ATCTTGTAAACATCTTGCAA+TGG - chr6.3:15195972-15195991 None:intergenic 30.0%
TTCATCAAGAACATGATTAC+TGG + chr6.3:15195285-15195304 MS.gene47052:CDS 30.0%
TTGCAAGATGTTTACAAGAT+TGG + chr6.3:15195972-15195991 MS.gene47052:CDS 30.0%
! TACTAAATATGTTGAGTTGC+AGG + chr6.3:15195502-15195521 MS.gene47052:intron 30.0%
!! TTATATGCTGATTCTGACTT+TGG + chr6.3:15195590-15195609 MS.gene47052:intron 30.0%
AGTTTCATCCTACTTGAAGA+AGG + chr6.3:15195779-15195798 MS.gene47052:CDS 35.0%
ATGGGTTCTTGACAAACTTA+AGG + chr6.3:15195164-15195183 MS.gene47052:CDS 35.0%
CAAGATGTTTACAAGATTGG+TGG + chr6.3:15195975-15195994 MS.gene47052:CDS 35.0%
CATATCAACATTGTCGTCAT+TGG + chr6.3:15195012-15195031 MS.gene47052:CDS 35.0%
CTAGTTGTAGATTCTGACTT+TGG + chr6.3:15195681-15195700 MS.gene47052:intron 35.0%
GATGATCTGTTGTTGTAACA+AGG + chr6.3:15195434-15195453 MS.gene47052:CDS 35.0%
TCACCATTCTTCAAGAACTT+AGG - chr6.3:15196398-15196417 None:intergenic 35.0%
TCTGGAAAATCAACAACAAC+TGG + chr6.3:15195045-15195064 MS.gene47052:CDS 35.0%
TGATGCTGGTATCATTAAGA+TGG + chr6.3:15196415-15196434 MS.gene47052:CDS 35.0%
TGTTAAGAATGTTGCTGTGA+AGG + chr6.3:15196157-15196176 MS.gene47052:CDS 35.0%
! GTTTACAAGATTGGTGGTAT+TGG + chr6.3:15195981-15196000 MS.gene47052:CDS 35.0%
!! AACTTGTTACCAAGATTGAC+AGG + chr6.3:15196345-15196364 MS.gene47052:CDS 35.0%
!!! TTTTGAAGCTGGTATCTCTA+AGG + chr6.3:15195359-15195378 MS.gene47052:CDS 35.0%
AAACTTCACAGCAATGTGAG+AGG - chr6.3:15196321-15196340 None:intergenic 40.0%
AACTTCAGTTGTCAATCCAG+TGG - chr6.3:15196072-15196091 None:intergenic 40.0%
AAGGTGACAACATGATTGAG+AGG + chr6.3:15195850-15195869 MS.gene47052:CDS 40.0%
AATGACTGTGCAGTAGTACT+TGG - chr6.3:15195244-15195263 None:intergenic 40.0%
ACTTCAGTTGTCAATCCAGT+GGG - chr6.3:15196071-15196090 None:intergenic 40.0%
ATCTGGTAAGGAGATTGAGA+AGG + chr6.3:15196370-15196389 MS.gene47052:CDS 40.0%
CATGTTGTCACCTTCAAATC+CGG - chr6.3:15195844-15195863 None:intergenic 40.0%
GAGCCTAAGTTCTTGAAGAA+TGG + chr6.3:15196392-15196411 MS.gene47052:CDS 40.0%
GCTCTTCTTGCATTTACTCT+TGG + chr6.3:15195402-15195421 MS.gene47052:CDS 40.0%
GTAACCAACCTTCTTCAAGT+AGG - chr6.3:15195790-15195809 None:intergenic 40.0%
TCATCCTACTTGAAGAAGGT+TGG + chr6.3:15195783-15195802 MS.gene47052:CDS 40.0%
TCCAAAAGTCACAACCATAC+CGG - chr6.3:15196048-15196067 None:intergenic 40.0%
TTACCATCGATATTGCCTTG+TGG + chr6.3:15195205-15195224 MS.gene47052:CDS 40.0%
TTGATGAAATCACGATGTCC+AGG - chr6.3:15195273-15195292 None:intergenic 40.0%
TTTCCACAAGGCAATATCGA+TGG - chr6.3:15195211-15195230 None:intergenic 40.0%
! GAACGAAGGGAATTTTGTCT+GGG - chr6.3:15195815-15195834 None:intergenic 40.0%
! GTGGTTCATGATGATGACTT+GGG - chr6.3:15196252-15196271 None:intergenic 40.0%
! TTCTTGAAGAATGGTGATGC+TGG + chr6.3:15196401-15196420 MS.gene47052:CDS 40.0%
AAGAACAGCACAATCAGCCT+GGG - chr6.3:15195316-15195335 None:intergenic 45.0%
AAGTGGAGGATATTCAGCGA+AGG - chr6.3:15196468-15196487 None:intergenic 45.0%
ACCAACCTTGACTGGTACAA+GGG + chr6.3:15195876-15195895 MS.gene47052:CDS 45.0%
AGCGTTCATTCAAGTACGCA+TGG + chr6.3:15195145-15195164 MS.gene47052:CDS 45.0%
ATCTTGCAATGGAAGCCTGA+GGG - chr6.3:15195961-15195980 None:intergenic 45.0%
ATGCGTCAAACTGTTGCTGT+TGG + chr6.3:15196509-15196528 MS.gene47052:CDS 45.0%
CACTTGATCTACAAGCTAGG+AGG + chr6.3:15195069-15195088 MS.gene47052:CDS 45.0%
CAGGTACGATGAAATCGTGA+AGG + chr6.3:15195755-15195774 MS.gene47052:CDS 45.0%
CCAAAAGTCACAACCATACC+GGG - chr6.3:15196047-15196066 None:intergenic 45.0%
CTTCACGATTTCATCGTACC+TGG - chr6.3:15195757-15195776 None:intergenic 45.0%
GCGTTCATTCAAGTACGCAT+GGG + chr6.3:15195146-15195165 MS.gene47052:CDS 45.0%
GGTCACTTGATCTACAAGCT+AGG + chr6.3:15195066-15195085 MS.gene47052:CDS 45.0%
GGTGGTCTCAAATTTCCACA+AGG - chr6.3:15195223-15195242 None:intergenic 45.0%
TAAGAACAGCACAATCAGCC+TGG - chr6.3:15195317-15195336 None:intergenic 45.0%
TCAAGAGCCTCAAGAAGAGT+TGG - chr6.3:15195903-15195922 None:intergenic 45.0%
TCACCTTCAAATCCGGAGAT+GGG - chr6.3:15195837-15195856 None:intergenic 45.0%
TGTGATCGAGAGATTCGAGA+AGG + chr6.3:15195104-15195123 MS.gene47052:CDS 45.0%
TTCGCTGAATATCCTCCACT+TGG + chr6.3:15196467-15196486 MS.gene47052:CDS 45.0%
TTGAATCCGACATTGTCTCC+AGG - chr6.3:15196137-15196156 None:intergenic 45.0%
TTTCGTTGCATCCAACTCCA+AGG + chr6.3:15196193-15196212 MS.gene47052:CDS 45.0%
! GAAGCTGGTATCTCTAAGGA+TGG + chr6.3:15195363-15195382 MS.gene47052:CDS 45.0%
! GATGACTTGGGAAGTGAAGT+TGG - chr6.3:15196240-15196259 None:intergenic 45.0%
! GGAACGAAGGGAATTTTGTC+TGG - chr6.3:15195816-15195835 None:intergenic 45.0%
! GGTGGTTCATGATGATGACT+TGG - chr6.3:15196253-15196272 None:intergenic 45.0%
!! ACTTGGACGTTTTGCTGTCA+GGG + chr6.3:15196484-15196503 MS.gene47052:CDS 45.0%
!! CTTATCATTGACTCCACCAC+TGG + chr6.3:15195333-15195352 MS.gene47052:CDS 45.0%
!! TGTTGCTGTTGGTGTCATCA+AGG + chr6.3:15196520-15196539 MS.gene47052:CDS 45.0%
!!! GTCTTTTTGGCTCGTTGATC+TGG - chr6.3:15195926-15195945 None:intergenic 45.0%
AAATCCGGAGATGGGAACGA+AGG - chr6.3:15195829-15195848 None:intergenic 50.0%
AATCCGGAGATGGGAACGAA+GGG - chr6.3:15195828-15195847 None:intergenic 50.0%
ACAGCAAAACGTCCAAGTGG+AGG - chr6.3:15196482-15196501 None:intergenic 50.0%
ACCAAGATTGACAGGCGATC+TGG + chr6.3:15196353-15196372 MS.gene47052:CDS 50.0%
ACCAGATCGCCTGTCAATCT+TGG - chr6.3:15196357-15196376 None:intergenic 50.0%
ACCAGCTTCAAAACCACCAG+TGG - chr6.3:15195352-15195371 None:intergenic 50.0%
AGCTTCAAAACCACCAGTGG+TGG - chr6.3:15195349-15195368 None:intergenic 50.0%
AGTGAAGTTGGCAGCTTCCT+TGG - chr6.3:15196228-15196247 None:intergenic 50.0%
ATCCGTTTCCGATCTGTCCA+GGG - chr6.3:15196274-15196293 None:intergenic 50.0%
ATGAACCACCCTGGACAGAT+CGG + chr6.3:15196263-15196282 MS.gene47052:CDS 50.0%
ATTCCCTTCGTTCCCATCTC+CGG + chr6.3:15195822-15195841 MS.gene47052:CDS 50.0%
CAAGGGACCAACTCTTCTTG+AGG + chr6.3:15195893-15195912 MS.gene47052:CDS 50.0%
CACCAACCTTGACTGGTACA+AGG + chr6.3:15195875-15195894 MS.gene47052:CDS 50.0%
CATACCGGGCTTCACAATAC+CGG - chr6.3:15196033-15196052 None:intergenic 50.0%
CATCAAGGCTGTGGAGAAGA+AGG + chr6.3:15196535-15196554 MS.gene47052:CDS 50.0%
CATCTTGCAATGGAAGCCTG+AGG - chr6.3:15195962-15195981 None:intergenic 50.0%
CATGATTACTGGAACCTCCC+AGG + chr6.3:15195296-15195315 MS.gene47052:CDS 50.0%
CTGACAGCAAAACGTCCAAG+TGG - chr6.3:15196485-15196504 None:intergenic 50.0%
CTTAAGGCTGAGCGTGAAAG+AGG + chr6.3:15195180-15195199 MS.gene47052:CDS 50.0%
CTTGTACCAGTCAAGGTTGG+TGG - chr6.3:15195877-15195896 None:intergenic 50.0%
GAAGGATCCTACTGGAGCTA+AGG + chr6.3:15196553-15196572 MS.gene47052:CDS 50.0%
GACTGTGCAGTAGTACTTGG+TGG - chr6.3:15195241-15195260 None:intergenic 50.0%
GATTGACAGGCGATCTGGTA+AGG + chr6.3:15196358-15196377 MS.gene47052:CDS 50.0%
GCTCTTCCTGGAGACAATGT+CGG + chr6.3:15196128-15196147 MS.gene47052:CDS 50.0%
GTCACCTTCAAATCCGGAGA+TGG - chr6.3:15195838-15195857 None:intergenic 50.0%
GTCATCATCATGAACCACCC+TGG + chr6.3:15196254-15196273 MS.gene47052:CDS 50.0%
GTGGAGAAGAAGGATCCTAC+TGG + chr6.3:15196545-15196564 MS.gene47052:CDS 50.0%
GTTCCCATCTCCGGATTTGA+AGG + chr6.3:15195831-15195850 MS.gene47052:CDS 50.0%
TACCACCCCTAAGTACTCGA+AGG + chr6.3:15195731-15195750 MS.gene47052:CDS 50.0%
TACTGGAGCTAAGGTCACCA+AGG + chr6.3:15196562-15196581 MS.gene47052:CDS 50.0%
TATCCGTTTCCGATCTGTCC+AGG - chr6.3:15196275-15196294 None:intergenic 50.0%
TCACAGCAATGTGAGAGGTG+TGG - chr6.3:15196316-15196335 None:intergenic 50.0%
TCCCTTGTACCAGTCAAGGT+TGG - chr6.3:15195880-15195899 None:intergenic 50.0%
TCTTGCAATGGAAGCCTGAG+GGG - chr6.3:15195960-15195979 None:intergenic 50.0%
TGCACAGTCATTGATGCACC+TGG + chr6.3:15195252-15195271 MS.gene47052:CDS 50.0%
TTGGTCCCTTGTACCAGTCA+AGG - chr6.3:15195884-15195903 None:intergenic 50.0%
! ACCTGGCCTTCGAGTACTTA+GGG - chr6.3:15195740-15195759 None:intergenic 50.0%
! CCCGGTATGGTTGTGACTTT+TGG + chr6.3:15196044-15196063 MS.gene47052:CDS 50.0%
! GGCTTGTCTGTGGGTCTTTT+TGG - chr6.3:15195939-15195958 None:intergenic 50.0%
! GGTATTGGAACTGTGCCAGT+TGG + chr6.3:15195996-15196015 MS.gene47052:CDS 50.0%
! GTTGTGACTTTTGGACCCAC+TGG + chr6.3:15196053-15196072 MS.gene47052:CDS 50.0%
! TACCTGGCCTTCGAGTACTT+AGG - chr6.3:15195741-15195760 None:intergenic 50.0%
! TCTCTAAGGATGGACAGACC+CGG + chr6.3:15195373-15195392 MS.gene47052:CDS 50.0%
! TTGGTGACCTTAGCTCCAGT+AGG - chr6.3:15196563-15196582 None:intergenic 50.0%
!! ATCATTGACTCCACCACTGG+TGG + chr6.3:15195336-15195355 MS.gene47052:CDS 50.0%
!! CACTTGGACGTTTTGCTGTC+AGG + chr6.3:15196483-15196502 MS.gene47052:CDS 50.0%
!! GTCATTGGACATGTCGACTC+TGG + chr6.3:15195027-15195046 MS.gene47052:CDS 50.0%
!! TGTTGGTGTCATCAAGGCTG+TGG + chr6.3:15196526-15196545 MS.gene47052:CDS 50.0%
!!! ACCACTGGTGGTTTTGAAGC+TGG + chr6.3:15195348-15195367 MS.gene47052:CDS 50.0%
AACAGCACAATCAGCCTGGG+AGG - chr6.3:15195313-15195332 None:intergenic 55.0%
AAGTTGGCAGCTTCCTTGGC+AGG - chr6.3:15196224-15196243 None:intergenic 55.0%
AGAGGTCCACCAACCTTGAC+TGG + chr6.3:15195868-15195887 MS.gene47052:CDS 55.0%
AGCGAAGGTCTCAACCACCA+TGG - chr6.3:15196453-15196472 None:intergenic 55.0%
AGTTGGCAGCTTCCTTGGCA+GGG - chr6.3:15196223-15196242 None:intergenic 55.0%
CACCCTGGACAGATCGGAAA+CGG + chr6.3:15196269-15196288 MS.gene47052:CDS 55.0%
CCAGTTGGACGTGTTGAGAC+CGG + chr6.3:15196011-15196030 MS.gene47052:CDS 55.0%
CGGTATTGTGAAGCCCGGTA+TGG + chr6.3:15196031-15196050 MS.gene47052:CDS 55.0%
CTTCTTCTTGGCAGCAGCCT+TGG - chr6.3:15196582-15196601 None:intergenic 55.0%
GAGACCGGTATTGTGAAGCC+CGG + chr6.3:15196026-15196045 MS.gene47052:CDS 55.0%
GAGGTGTGGCAATCAAGCAC+TGG - chr6.3:15196302-15196321 None:intergenic 55.0%
GCGAAGGTCTCAACCACCAT+GGG - chr6.3:15196452-15196471 None:intergenic 55.0%
GCTCTCACTGAAGCTCTTCC+TGG + chr6.3:15196116-15196135 MS.gene47052:CDS 55.0%
GCTGTGAAGGATCTCAAGCG+TGG + chr6.3:15196170-15196189 MS.gene47052:CDS 55.0%
GTCTGTTGAGATGCACCACG+AGG + chr6.3:15196094-15196113 MS.gene47052:CDS 55.0%
TTCCTTGGCAGGGTCATCCT+TGG - chr6.3:15196213-15196232 None:intergenic 55.0%
! ATGCAAGAAGAGCGTGCTCC+CGG - chr6.3:15195395-15195414 None:intergenic 55.0%
! CCTGGCCTTCGAGTACTTAG+GGG - chr6.3:15195739-15195758 None:intergenic 55.0%
! CTCTAAGGATGGACAGACCC+GGG + chr6.3:15195374-15195393 MS.gene47052:CDS 55.0%
! TCAACCACCATGGGCTTGGT+GGG - chr6.3:15196443-15196462 None:intergenic 55.0%
AAGCCTGAGGGGCTTGTCTG+TGG - chr6.3:15195949-15195968 None:intergenic 60.0%
AGCCTGAGGGGCTTGTCTGT+GGG - chr6.3:15195948-15195967 None:intergenic 60.0%
CCCCTAAGTACTCGAAGGCC+AGG + chr6.3:15195736-15195755 MS.gene47052:CDS 60.0%
CCGGTCTCAACACGTCCAAC+TGG - chr6.3:15196014-15196033 None:intergenic 60.0%
CGTTTCCGATCTGTCCAGGG+TGG - chr6.3:15196271-15196290 None:intergenic 60.0%
CTCAACCACCATGGGCTTGG+TGG - chr6.3:15196444-15196463 None:intergenic 60.0%
CTCCAAGGATGACCCTGCCA+AGG + chr6.3:15196208-15196227 MS.gene47052:CDS 60.0%
GAGCTTCAGTGAGAGCCTCG+TGG - chr6.3:15196112-15196131 None:intergenic 60.0%
GATGGTTCCCACCAAGCCCA+TGG + chr6.3:15196433-15196452 MS.gene47052:CDS 60.0%
GGCAGGGTCATCCTTGGAGT+TGG - chr6.3:15196207-15196226 None:intergenic 60.0%
GGCCTTCGAGTACTTAGGGG+TGG - chr6.3:15195736-15195755 None:intergenic 60.0%
GGTCTCAACCACCATGGGCT+TGG - chr6.3:15196447-15196466 None:intergenic 60.0%
! TGCAAGAAGAGCGTGCTCCC+GGG - chr6.3:15195394-15195413 None:intergenic 60.0%
GACCCACAGACAAGCCCCTC+AGG + chr6.3:15195943-15195962 MS.gene47052:CDS 65.0%
GGTTCCCACCAAGCCCATGG+TGG + chr6.3:15196436-15196455 MS.gene47052:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 15194994 15196604 15194994 ID=MS.gene47052
chr6.3 mRNA 15194994 15196604 15194994 ID=MS.gene47052.t1;Parent=MS.gene47052
chr6.3 exon 15194994 15195455 15194994 ID=MS.gene47052.t1.exon1;Parent=MS.gene47052.t1
chr6.3 CDS 15194994 15195455 15194994 ID=cds.MS.gene47052.t1;Parent=MS.gene47052.t1
chr6.3 exon 15195723 15196604 15195723 ID=MS.gene47052.t1.exon2;Parent=MS.gene47052.t1
chr6.3 CDS 15195723 15196604 15195723 ID=cds.MS.gene47052.t1;Parent=MS.gene47052.t1
Gene Sequence

>MS.gene47052

ATGGGAAAAGAAAAGATTCATATCAACATTGTCGTCATTGGACATGTCGACTCTGGAAAATCAACAACAACTGGTCACTTGATCTACAAGCTAGGAGGTATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTACGCATGGGTTCTTGACAAACTTAAGGCTGAGCGTGAAAGAGGAATTACCATCGATATTGCCTTGTGGAAATTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCACCTGGACATCGTGATTTCATCAAGAACATGATTACTGGAACCTCCCAGGCTGATTGTGCTGTTCTTATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCCGGGAGCACGCTCTTCTTGCATTTACTCTTGGAGTGAAGCAGATGATCTGTTGTTGTAACAAGGTAAATTTCGTAGATCTTTTCTATGTGTAAAATTGCAATAATTTCTTACTAAATATGTTGAGTTGCAGGTTGTGAAATTAGTTACAGTCTGTTAAGTAACATCATTATAATATTATAATATTTATTTGTTATGTTTATATGCTGATTCTGACTTTGGTATGTATATTTTGATTTTGTTACAATCTATTGTGTATGTACATTATTTTAATTTTTTATATGTTATATCTAGTTGTAGATTCTGACTTTGGTTTCAATATTTTGTTTCAGATGGATGCTACCACCCCTAAGTACTCGAAGGCCAGGTACGATGAAATCGTGAAGGAAGTTTCATCCTACTTGAAGAAGGTTGGTTACAACCCAGACAAAATTCCCTTCGTTCCCATCTCCGGATTTGAAGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTTCTTGAGGCTCTTGACCAGATCAACGAGCCAAAAAGACCCACAGACAAGCCCCTCAGGCTTCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGAACTGTGCCAGTTGGACGTGTTGAGACCGGTATTGTGAAGCCCGGTATGGTTGTGACTTTTGGACCCACTGGATTGACAACTGAAGTTAAGTCTGTTGAGATGCACCACGAGGCTCTCACTGAAGCTCTTCCTGGAGACAATGTCGGATTCAATGTTAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTTCGTTGCATCCAACTCCAAGGATGACCCTGCCAAGGAAGCTGCCAACTTCACTTCCCAAGTCATCATCATGAACCACCCTGGACAGATCGGAAACGGATATGCTCCAGTGCTTGATTGCCACACCTCTCACATTGCTGTGAAGTTTGCTGAACTTGTTACCAAGATTGACAGGCGATCTGGTAAGGAGATTGAGAAGGAGCCTAAGTTCTTGAAGAATGGTGATGCTGGTATCATTAAGATGGTTCCCACCAAGCCCATGGTGGTTGAGACCTTCGCTGAATATCCTCCACTTGGACGTTTTGCTGTCAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGGCTGTGGAGAAGAAGGATCCTACTGGAGCTAAGGTCACCAAGGCTGCTGCCAAGAAGAAGTAA
Protein sequence

>MS.gene47052.t1

MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIVKPGMVVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAAKKK