AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001098


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001098.t1 MTR_6g021800 100.000 447 0 0 1 447 1 447 0.0 918
MS.gene001098.t1 MTR_6g021805 100.000 447 0 0 1 447 1 447 0.0 918
MS.gene001098.t1 MTR_1g495705 96.652 448 14 1 1 447 1 448 0.0 895
MS.gene001098.t1 MTR_1g095650 96.652 448 14 1 1 447 1 448 0.0 895
MS.gene001098.t1 MTR_1g095703 96.429 448 15 1 1 447 1 448 0.0 895
MS.gene001098.t1 MTR_4g014810 95.302 447 21 0 1 447 1 447 0.0 891
MS.gene001098.t1 MTR_1g013680 95.227 440 18 1 1 437 1 440 0.0 865
MS.gene001098.t1 MTR_1g085410 81.336 434 81 0 1 434 1 434 0.0 739
MS.gene001098.t1 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 726
MS.gene001098.t1 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 724
MS.gene001098.t1 MTR_1g024175 78.802 434 92 0 1 434 1 434 0.0 724
MS.gene001098.t1 MTR_8g014590 77.951 449 96 2 1 446 1 449 0.0 713
MS.gene001098.t1 MTR_1g095650 95.965 347 13 1 102 447 1 347 0.0 688
MS.gene001098.t1 MTR_2g082730 70.682 440 112 2 1 438 1 425 0.0 639
MS.gene001098.t1 MTR_5g037350 66.383 470 121 1 3 435 13 482 0.0 629
MS.gene001098.t1 MTR_1g089520 69.406 438 116 3 4 440 5 425 0.0 623
MS.gene001098.t1 MTR_2g082665 65.682 440 108 2 1 438 1 399 0.0 581
MS.gene001098.t1 MTR_2g037420 63.053 452 121 4 1 447 1 411 0.0 558
MS.gene001098.t1 MTR_2g080210 64.368 435 119 4 1 432 1 402 0.0 549
MS.gene001098.t1 MTR_8g013910 63.029 449 131 5 1 433 1 430 0.0 546
MS.gene001098.t1 MTR_8g008740 78.154 325 70 1 1 324 1 325 0.0 538
MS.gene001098.t1 MTR_1g112460 64.094 298 65 4 155 446 1 262 3.93e-124 362
MS.gene001098.t1 MTR_1g495735 74.129 201 42 1 240 430 106 306 3.35e-99 299
MS.gene001098.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 4.80e-17 82.0
MS.gene001098.t1 MTR_6g080420 37.731 432 255 6 5 428 89 514 1.21e-96 300
MS.gene001098.t1 MTR_8g106700 37.731 432 259 6 4 429 49 476 1.45e-93 291
MS.gene001098.t1 MTR_8g106700 37.731 432 259 6 4 429 43 470 2.18e-93 290
MS.gene001098.t1 MTR_8g106700 37.731 432 259 6 4 429 70 497 4.03e-93 290
MS.gene001098.t1 MTR_8g087950 35.566 433 270 6 7 433 275 704 2.05e-90 289
MS.gene001098.t1 MTR_8g087950 35.566 433 270 6 7 433 348 777 1.09e-89 289
MS.gene001098.t1 MTR_1g101880 86.364 154 21 0 1 154 1 154 1.19e-89 273
MS.gene001098.t1 MTR_4g054970 55.372 242 79 4 193 431 50 265 2.03e-79 248
MS.gene001098.t1 MTR_4g054970 77.273 44 10 0 1 44 1 44 4.58e-13 69.7
MS.gene001098.t1 MTR_1g024165 81.884 138 25 0 8 145 12 149 1.95e-78 240
MS.gene001098.t1 MTR_8g014950 75.490 102 25 0 3 104 4 105 2.57e-47 158
MS.gene001098.t1 MTR_7g094460 30.227 440 243 14 3 429 59 447 1.67e-45 164
MS.gene001098.t1 MTR_7g098190 53.892 167 51 5 56 220 10 152 1.17e-42 149
MS.gene001098.t1 MTR_3g076660 30.631 444 247 15 3 429 88 487 5.23e-42 155
MS.gene001098.t1 MTR_2g021300 29.385 439 248 12 3 429 46 434 1.09e-41 153
MS.gene001098.t1 MTR_8g014960 62.195 82 31 0 213 294 2 83 2.88e-27 107
MS.gene001098.t1 MTR_3g097250 26.103 272 144 9 9 272 85 307 2.92e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001098.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001098.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001098.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001098.t1 AT1G07920 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001098.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001098.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001098.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001098.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001098.t1 AT1G07930 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001098.t1 AT1G07930 98.824 255 3 0 1 255 1 255 0.0 530
MS.gene001098.t1 AT1G07930 90.517 116 11 0 331 446 254 369 1.79e-68 223
MS.gene001098.t1 AT1G18070 37.412 425 258 5 5 424 99 520 6.59e-94 293
MS.gene001098.t1 AT1G18070 37.412 425 258 5 5 424 99 520 6.59e-94 293
MS.gene001098.t1 AT1G18070 36.697 436 257 6 5 424 99 531 1.04e-90 285
MS.gene001098.t1 AT5G10630 35.765 425 265 5 7 426 239 660 1.84e-90 288
MS.gene001098.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.88e-90 288
MS.gene001098.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.88e-90 288
MS.gene001098.t1 AT5G10630 35.765 425 265 5 7 426 310 731 9.81e-90 288
MS.gene001098.t1 AT5G10630 35.765 425 265 5 7 426 315 736 1.10e-89 288
MS.gene001098.t1 AT1G35550 77.885 104 23 0 335 438 1 104 5.60e-54 176
MS.gene001098.t1 AT4G20360 30.594 438 255 10 3 429 75 474 1.27e-44 162
MS.gene001098.t1 AT4G20360 30.594 438 255 10 3 429 75 474 1.27e-44 162
MS.gene001098.t1 AT4G02930 29.977 437 249 13 3 429 63 452 2.02e-44 161
MS.gene001098.t1 AT2G31060 25.000 264 160 8 9 263 61 295 1.60e-12 70.1
MS.gene001098.t1 AT2G31060 24.615 260 162 7 9 263 61 291 2.25e-11 66.6
MS.gene001098.t1 AT5G08650 27.037 270 144 10 9 272 88 310 2.46e-11 66.2
MS.gene001098.t1 AT5G08650 27.037 270 144 10 9 272 88 310 2.73e-11 66.2

Find 138 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGGTATGGTTGTGACTTT+TGG 0.190241 6.2:+15179152 MS.gene001098:CDS
GGCTTGTCTGTGGGTCTCTT+TGG 0.228629 6.2:-15179044 None:intergenic
GTTGTGACATTACTTCTTCT+TGG 0.266998 6.2:-15179699 None:intergenic
GCTCTCACTGAAGCTCTTCC+AGG 0.343392 6.2:+15179224 MS.gene001098:CDS
GTCTCTTTGGCTCGTTGATC+TGG 0.343863 6.2:-15179031 None:intergenic
TTGCAAGATGTTTACAAGAT+TGG 0.346171 6.2:+15179080 MS.gene001098:CDS
TTCATCAAGAACATGATTAC+TGG 0.350652 6.2:+15178393 MS.gene001098:CDS
CATATCAACATTGTCGTCAT+TGG 0.354281 6.2:+15178120 MS.gene001098:CDS
ATCACCATTCTTCAAGAACT+TGG 0.354818 6.2:-15179504 None:intergenic
GTTTACAAGATTGGTGGTAT+TGG 0.363154 6.2:+15179089 MS.gene001098:CDS
CTTCTTCTTGGCAGCAGCCT+TGG 0.371495 6.2:-15179687 None:intergenic
AAGTTGGCAGCTTCCTTGGC+AGG 0.382611 6.2:-15179329 None:intergenic
GCTCTTCTTGCATTTACTCT+TGG 0.389052 6.2:+15178510 MS.gene001098:CDS
AGTGAAGTTGGCAGCTTCCT+TGG 0.410082 6.2:-15179333 None:intergenic
ACCTGGCCTTCGAGTACTTA+GGG 0.418829 6.2:-15178845 None:intergenic
ACCAGATCGCCTGTCAATCT+TGG 0.419719 6.2:-15179462 None:intergenic
TTCCTTGGCAGGGTCATCCT+TGG 0.427055 6.2:-15179318 None:intergenic
GTTCCCATCTCCGGATTTGA+AGG 0.431146 6.2:+15178939 MS.gene001098:CDS
AAGCCTGAGGGGCTTGTCTG+TGG 0.432212 6.2:-15179054 None:intergenic
TCTGGAAAATCAACAACAAC+TGG 0.436226 6.2:+15178153 MS.gene001098:CDS
AGCCTGAGGGGCTTGTCTGT+GGG 0.440652 6.2:-15179053 None:intergenic
ATGGGTTCTTGACAAACTTA+AGG 0.442151 6.2:+15178272 MS.gene001098:CDS
CATGTTGTCACCTTCAAATC+CGG 0.442623 6.2:-15178949 None:intergenic
TATCCGTTTCCGATCTGTCC+AGG 0.445786 6.2:-15179380 None:intergenic
CCGGTCTCAACACGTCCAAC+TGG 0.449484 6.2:-15179119 None:intergenic
ATTCCCTTCGTTCCCATCTC+CGG 0.450165 6.2:+15178930 MS.gene001098:CDS
GGCAGGGTCATCCTTGGAGT+TGG 0.452433 6.2:-15179312 None:intergenic
GGTCTCAACCACCATGGGCT+TGG 0.458699 6.2:-15179552 None:intergenic
CTTATCATTGACTCCACCAC+TGG 0.461752 6.2:+15178441 MS.gene001098:CDS
CTCAACCACCATGGGCTTGG+TGG 0.468734 6.2:-15179549 None:intergenic
ACCAAGATTGACAGGCGATC+TGG 0.474566 6.2:+15179461 MS.gene001098:CDS
CAAGATGTTTACAAGATTGG+TGG 0.475647 6.2:+15179083 MS.gene001098:CDS
TAAGAACAGCACAATCAGCC+TGG 0.478298 6.2:-15178422 None:intergenic
CTTCACGATTTCATCGTACC+TGG 0.484982 6.2:-15178862 None:intergenic
CTTAAGGCTGAGCGTGAAAG+AGG 0.490014 6.2:+15178288 MS.gene001098:CDS
GTCATTGGACATGTCGACTC+TGG 0.490675 6.2:+15178135 MS.gene001098:CDS
CACCCTGGACAGATCGGAAA+CGG 0.491987 6.2:+15179377 MS.gene001098:CDS
GTCACCTTCAAATCCGGAGA+TGG 0.495769 6.2:-15178943 None:intergenic
AGTTTCATCCTACTTGAAGA+AGG 0.496964 6.2:+15178887 MS.gene001098:CDS
TCCAAAAGTCACAACCATAC+CGG 0.497778 6.2:-15179153 None:intergenic
CATCAAGGCTGTGGAGAAGA+AGG 0.501366 6.2:+15179643 MS.gene001098:CDS
CACCAACCTTGACTGGTACA+AGG 0.502465 6.2:+15178983 MS.gene001098:CDS
TCATCCTACTTGAAGAAGGT+TGG 0.505639 6.2:+15178891 MS.gene001098:CDS
AACTTGTTACCAAGATTGAC+AGG 0.511236 6.2:+15179453 MS.gene001098:CDS
GACCCACAGACAAGCCCCTC+AGG 0.515484 6.2:+15179051 MS.gene001098:CDS
GATTGACAGGCGATCTGGTA+AGG 0.518046 6.2:+15179466 MS.gene001098:CDS
CTTGTACCAGTCAAGGTTGG+TGG 0.518944 6.2:-15178982 None:intergenic
TACCTGGCCTTCGAGTACTT+AGG 0.520657 6.2:-15178846 None:intergenic
ATCATTGACTCCACCACTGG+TGG 0.521304 6.2:+15178444 MS.gene001098:CDS
AGAGGTCCACCAACCTTGAC+TGG 0.523105 6.2:+15178976 MS.gene001098:CDS
TTGAATCCGACATTGTCTCC+TGG 0.526013 6.2:-15179242 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.529820 6.2:-15179548 None:intergenic
GAGCCCAAGTTCTTGAAGAA+TGG 0.532631 6.2:+15179500 MS.gene001098:CDS
AGCGTTCATTCAAGTACGCA+TGG 0.534658 6.2:+15178253 MS.gene001098:CDS
GTGGAGAAGAAGGATCCTAC+TGG 0.535855 6.2:+15179653 MS.gene001098:CDS
TCACCATTCTTCAAGAACTT+GGG 0.540637 6.2:-15179503 None:intergenic
CCAAAAGTCACAACCATACC+GGG 0.540748 6.2:-15179152 None:intergenic
GATGACTTGGGAAGTGAAGT+TGG 0.546093 6.2:-15179345 None:intergenic
TCCCTTGTACCAGTCAAGGT+TGG 0.546130 6.2:-15178985 None:intergenic
ATGCAAGAAGAGCGTGCTCA+CGG 0.549857 6.2:-15178500 None:intergenic
CGGTATTGTGAAGCCCGGTA+TGG 0.551104 6.2:+15179139 MS.gene001098:CDS
GAAGGATCCTACTGGAGCTA+AGG 0.552001 6.2:+15179661 MS.gene001098:CDS
CCCCTAAGTACTCGAAGGCC+AGG 0.553487 6.2:+15178844 MS.gene001098:CDS
TTCTTGAAGAATGGTGATGC+TGG 0.554703 6.2:+15179509 MS.gene001098:CDS
TGCACAGTCATTGATGCACC+TGG 0.556287 6.2:+15178360 MS.gene001098:CDS
ATCTTGCAATGGAAGCCTGA+GGG 0.556985 6.2:-15179066 None:intergenic
TGTTGCTGTTGGTGTCATCA+AGG 0.557300 6.2:+15179628 MS.gene001098:CDS
TCACCTTCAAATCCGGAGAT+GGG 0.557788 6.2:-15178942 None:intergenic
CATACCGGGCTTCACAATAC+CGG 0.558131 6.2:-15179138 None:intergenic
ACCAACCTTGACTGGTACAA+GGG 0.559612 6.2:+15178984 MS.gene001098:CDS
TTGATGAAATCACGATGTCC+AGG 0.561637 6.2:-15178378 None:intergenic
GTAACCAACCTTCTTCAAGT+AGG 0.562921 6.2:-15178895 None:intergenic
GCAAAGGTCTCAACCACCAT+GGG 0.563446 6.2:-15179557 None:intergenic
AGTTGGCAGCTTCCTTGGCA+GGG 0.564600 6.2:-15179328 None:intergenic
GGTGGTTCATGATGATGACT+TGG 0.569890 6.2:-15179358 None:intergenic
AGCTTCAAAACCACCAGTGG+TGG 0.571917 6.2:-15178454 None:intergenic
TTGGTCCCTTGTACCAGTCA+AGG 0.575920 6.2:-15178989 None:intergenic
AACTTCAGTTGTCAATCCAG+TGG 0.577026 6.2:-15179177 None:intergenic
GACTGTGCAGTAGTACTTGG+TGG 0.578462 6.2:-15178346 None:intergenic
TGCAAGAAGAGCGTGCTCAC+GGG 0.579779 6.2:-15178499 None:intergenic
TGTTAAGAATGTTGCTGTGA+AGG 0.579878 6.2:+15179265 MS.gene001098:CDS
ATGAACCACCCTGGACAGAT+CGG 0.581582 6.2:+15179371 MS.gene001098:CDS
CATGATTACTGGAACCTCCC+AGG 0.581850 6.2:+15178404 MS.gene001098:CDS
TCAAGAGCCTCAAGAAGAGT+TGG 0.584894 6.2:-15179008 None:intergenic
ATCCGTTTCCGATCTGTCCA+GGG 0.587827 6.2:-15179379 None:intergenic
AATGACTGTGCAGTAGTACT+TGG 0.591989 6.2:-15178349 None:intergenic
GAAGCTGGTATCTCTAAGGA+TGG 0.592030 6.2:+15178471 MS.gene001098:CDS
CCAGTTGGACGTGTTGAGAC+CGG 0.592088 6.2:+15179119 MS.gene001098:CDS
ATCTTGTAAACATCTTGCAA+TGG 0.592677 6.2:-15179077 None:intergenic
TTTGCTGAATATCCTCCACT+TGG 0.598309 6.2:+15179575 MS.gene001098:CDS
ACTTCAGTTGTCAATCCAGT+GGG 0.599610 6.2:-15179176 None:intergenic
GAGGTGTGGCAATCAAGCAC+TGG 0.600600 6.2:-15179407 None:intergenic
GGTCACTTGATCTACAAGCT+AGG 0.604596 6.2:+15178174 MS.gene001098:CDS
TTTCCACAAGGCAATATCGA+TGG 0.606438 6.2:-15178316 None:intergenic
AAGAACAGCACAATCAGCCT+GGG 0.607202 6.2:-15178421 None:intergenic
TGTTGGTGTCATCAAGGCTG+TGG 0.608422 6.2:+15179634 MS.gene001098:CDS
AAATCCGGAGATGGGAACGA+AGG 0.610633 6.2:-15178934 None:intergenic
GATGGTTCCCACCAAGCCCA+TGG 0.611182 6.2:+15179541 MS.gene001098:CDS
AATCCGGAGATGGGAACGAA+GGG 0.611560 6.2:-15178933 None:intergenic
GCGTTCATTCAAGTACGCAT+GGG 0.615188 6.2:+15178254 MS.gene001098:CDS
AGCAAAGGTCTCAACCACCA+TGG 0.617611 6.2:-15179558 None:intergenic
CTCCAAGGATGACCCTGCCA+AGG 0.619064 6.2:+15179316 MS.gene001098:CDS
TTTCGTTGCATCCAACTCCA+AGG 0.619372 6.2:+15179301 MS.gene001098:CDS
ATGCGTCAAACTGTTGCTGT+TGG 0.619748 6.2:+15179617 MS.gene001098:CDS
AAGGTGACAACATGATTGAG+AGG 0.624581 6.2:+15178958 MS.gene001098:CDS
GAGACCGGTATTGTGAAGCC+CGG 0.625104 6.2:+15179134 MS.gene001098:CDS
TCTTGCAATGGAAGCCTGAG+GGG 0.631058 6.2:-15179065 None:intergenic
CAAGGGACCAACTCTTCTTG+AGG 0.634066 6.2:+15179001 MS.gene001098:CDS
ATCTGGTAAGGAGATTGAGA+AGG 0.634092 6.2:+15179478 MS.gene001098:CDS
GATGATCTGTTGTTGTAACA+AGG 0.635291 6.2:+15178542 MS.gene001098:CDS
GTCATCATCATGAACCACCC+TGG 0.635348 6.2:+15179362 MS.gene001098:CDS
TGATGCTGGTATCATTAAGA+TGG 0.636151 6.2:+15179523 MS.gene001098:CDS
TGTGATCGAGAGATTCGAGA+AGG 0.638590 6.2:+15178212 MS.gene001098:CDS
CCTGGCCTTCGAGTACTTAG+GGG 0.644615 6.2:-15178844 None:intergenic
CACTTGATCTACAAGCTAGG+AGG 0.645428 6.2:+15178177 MS.gene001098:CDS
TTACCATCGATATTGCCTTG+TGG 0.647445 6.2:+15178313 MS.gene001098:CDS
TACTGGAGCTAAGGTCACCA+AGG 0.647527 6.2:+15179670 MS.gene001098:CDS
GGTATTGGAACTGTGCCAGT+TGG 0.649080 6.2:+15179104 MS.gene001098:CDS
GCTCTTCCAGGAGACAATGT+CGG 0.651488 6.2:+15179236 MS.gene001098:CDS
AAACTTCACAGCAATGTGAG+AGG 0.653594 6.2:-15179426 None:intergenic
AACAGCACAATCAGCCTGGG+AGG 0.653730 6.2:-15178418 None:intergenic
CATCTTGCAATGGAAGCCTG+AGG 0.654491 6.2:-15179067 None:intergenic
ACAGCAAAACGTCCAAGTGG+AGG 0.656142 6.2:-15179587 None:intergenic
GGCCTTCGAGTACTTAGGGG+TGG 0.657553 6.2:-15178841 None:intergenic
CAGGTACGATGAAATCGTGA+AGG 0.661162 6.2:+15178863 MS.gene001098:CDS
TTGGTGACCTTAGCTCCAGT+AGG 0.661771 6.2:-15179668 None:intergenic
ACCAGCTTCAAAACCACCAG+TGG 0.669846 6.2:-15178457 None:intergenic
TCACAGCAATGTGAGAGGTG+TGG 0.670228 6.2:-15179421 None:intergenic
AAGTGGAGGATATTCAGCAA+AGG 0.671437 6.2:-15179573 None:intergenic
CGTTTCCGATCTGTCCAGGG+TGG 0.684114 6.2:-15179376 None:intergenic
CTGACAGCAAAACGTCCAAG+TGG 0.689307 6.2:-15179590 None:intergenic
GTGGTTCATGATGATGACTT+GGG 0.690284 6.2:-15179357 None:intergenic
TACCACCCCTAAGTACTCGA+AGG 0.691722 6.2:+15178839 MS.gene001098:CDS
GGTGGTCTCAAATTTCCACA+AGG 0.697133 6.2:-15178328 None:intergenic
GTCTGTTGAGATGCACCACG+AGG 0.705830 6.2:+15179202 MS.gene001098:CDS
GCTGTGAAGGATCTCAAGCG+TGG 0.706441 6.2:+15179278 MS.gene001098:CDS
GGTTCCCACCAAGCCCATGG+TGG 0.716413 6.2:+15179544 MS.gene001098:CDS
GAGCTTCAGTGAGAGCCTCG+TGG 0.728674 6.2:-15179217 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAATATTTTGTTTCAGA+TGG + chr6.2:15178812-15178831 MS.gene001098:intron 20.0%
! AAATTAGTTACAGTCTGTTA+AGG + chr6.2:15178638-15178657 MS.gene001098:intron 25.0%
ATCTTGTAAACATCTTGCAA+TGG - chr6.2:15179080-15179099 None:intergenic 30.0%
TTCATCAAGAACATGATTAC+TGG + chr6.2:15178393-15178412 MS.gene001098:CDS 30.0%
TTGCAAGATGTTTACAAGAT+TGG + chr6.2:15179080-15179099 MS.gene001098:CDS 30.0%
! TACTAAATATGTTGAGTTGC+AGG + chr6.2:15178610-15178629 MS.gene001098:intron 30.0%
!! TTATTTGCTGATTCTGACTT+TGG + chr6.2:15178698-15178717 MS.gene001098:intron 30.0%
AGTTTCATCCTACTTGAAGA+AGG + chr6.2:15178887-15178906 MS.gene001098:CDS 35.0%
ATCACCATTCTTCAAGAACT+TGG - chr6.2:15179507-15179526 None:intergenic 35.0%
ATGGGTTCTTGACAAACTTA+AGG + chr6.2:15178272-15178291 MS.gene001098:CDS 35.0%
CAAGATGTTTACAAGATTGG+TGG + chr6.2:15179083-15179102 MS.gene001098:CDS 35.0%
CATATCAACATTGTCGTCAT+TGG + chr6.2:15178120-15178139 MS.gene001098:CDS 35.0%
CTAGTTGTAGATTCTGACTT+TGG + chr6.2:15178789-15178808 MS.gene001098:intron 35.0%
GATGATCTGTTGTTGTAACA+AGG + chr6.2:15178542-15178561 MS.gene001098:CDS 35.0%
TCACCATTCTTCAAGAACTT+GGG - chr6.2:15179506-15179525 None:intergenic 35.0%
TCTGGAAAATCAACAACAAC+TGG + chr6.2:15178153-15178172 MS.gene001098:CDS 35.0%
TGATGCTGGTATCATTAAGA+TGG + chr6.2:15179523-15179542 MS.gene001098:CDS 35.0%
TGTTAAGAATGTTGCTGTGA+AGG + chr6.2:15179265-15179284 MS.gene001098:CDS 35.0%
! GTTTACAAGATTGGTGGTAT+TGG + chr6.2:15179089-15179108 MS.gene001098:CDS 35.0%
!! AACTTGTTACCAAGATTGAC+AGG + chr6.2:15179453-15179472 MS.gene001098:CDS 35.0%
!!! TTTTGAAGCTGGTATCTCTA+AGG + chr6.2:15178467-15178486 MS.gene001098:CDS 35.0%
AAACTTCACAGCAATGTGAG+AGG - chr6.2:15179429-15179448 None:intergenic 40.0%
AACTTCAGTTGTCAATCCAG+TGG - chr6.2:15179180-15179199 None:intergenic 40.0%
AAGGTGACAACATGATTGAG+AGG + chr6.2:15178958-15178977 MS.gene001098:CDS 40.0%
AAGTGGAGGATATTCAGCAA+AGG - chr6.2:15179576-15179595 None:intergenic 40.0%
AATGACTGTGCAGTAGTACT+TGG - chr6.2:15178352-15178371 None:intergenic 40.0%
ACTTCAGTTGTCAATCCAGT+GGG - chr6.2:15179179-15179198 None:intergenic 40.0%
ATCTGGTAAGGAGATTGAGA+AGG + chr6.2:15179478-15179497 MS.gene001098:CDS 40.0%
CATGTTGTCACCTTCAAATC+CGG - chr6.2:15178952-15178971 None:intergenic 40.0%
GCTCTTCTTGCATTTACTCT+TGG + chr6.2:15178510-15178529 MS.gene001098:CDS 40.0%
GTAACCAACCTTCTTCAAGT+AGG - chr6.2:15178898-15178917 None:intergenic 40.0%
TCATCCTACTTGAAGAAGGT+TGG + chr6.2:15178891-15178910 MS.gene001098:CDS 40.0%
TCCAAAAGTCACAACCATAC+CGG - chr6.2:15179156-15179175 None:intergenic 40.0%
TTACCATCGATATTGCCTTG+TGG + chr6.2:15178313-15178332 MS.gene001098:CDS 40.0%
TTGATGAAATCACGATGTCC+AGG - chr6.2:15178381-15178400 None:intergenic 40.0%
TTTCCACAAGGCAATATCGA+TGG - chr6.2:15178319-15178338 None:intergenic 40.0%
TTTGCTGAATATCCTCCACT+TGG + chr6.2:15179575-15179594 MS.gene001098:CDS 40.0%
! GAACGAAGGGAATTTTGTCT+GGG - chr6.2:15178923-15178942 None:intergenic 40.0%
! GTGGTTCATGATGATGACTT+GGG - chr6.2:15179360-15179379 None:intergenic 40.0%
! TTCTTGAAGAATGGTGATGC+TGG + chr6.2:15179509-15179528 MS.gene001098:CDS 40.0%
AAGAACAGCACAATCAGCCT+GGG - chr6.2:15178424-15178443 None:intergenic 45.0%
ACCAACCTTGACTGGTACAA+GGG + chr6.2:15178984-15179003 MS.gene001098:CDS 45.0%
AGCGTTCATTCAAGTACGCA+TGG + chr6.2:15178253-15178272 MS.gene001098:CDS 45.0%
ATCTTGCAATGGAAGCCTGA+GGG - chr6.2:15179069-15179088 None:intergenic 45.0%
ATGCGTCAAACTGTTGCTGT+TGG + chr6.2:15179617-15179636 MS.gene001098:CDS 45.0%
CACTTGATCTACAAGCTAGG+AGG + chr6.2:15178177-15178196 MS.gene001098:CDS 45.0%
CAGGTACGATGAAATCGTGA+AGG + chr6.2:15178863-15178882 MS.gene001098:CDS 45.0%
CCAAAAGTCACAACCATACC+GGG - chr6.2:15179155-15179174 None:intergenic 45.0%
CTTCACGATTTCATCGTACC+TGG - chr6.2:15178865-15178884 None:intergenic 45.0%
GAGCCCAAGTTCTTGAAGAA+TGG + chr6.2:15179500-15179519 MS.gene001098:CDS 45.0%
GCGTTCATTCAAGTACGCAT+GGG + chr6.2:15178254-15178273 MS.gene001098:CDS 45.0%
GGTCACTTGATCTACAAGCT+AGG + chr6.2:15178174-15178193 MS.gene001098:CDS 45.0%
GGTGGTCTCAAATTTCCACA+AGG - chr6.2:15178331-15178350 None:intergenic 45.0%
TAAGAACAGCACAATCAGCC+TGG - chr6.2:15178425-15178444 None:intergenic 45.0%
TCAAGAGCCTCAAGAAGAGT+TGG - chr6.2:15179011-15179030 None:intergenic 45.0%
TCACCTTCAAATCCGGAGAT+GGG - chr6.2:15178945-15178964 None:intergenic 45.0%
TGTGATCGAGAGATTCGAGA+AGG + chr6.2:15178212-15178231 MS.gene001098:CDS 45.0%
TTGAATCCGACATTGTCTCC+TGG - chr6.2:15179245-15179264 None:intergenic 45.0%
TTTCGTTGCATCCAACTCCA+AGG + chr6.2:15179301-15179320 MS.gene001098:CDS 45.0%
! GAAGCTGGTATCTCTAAGGA+TGG + chr6.2:15178471-15178490 MS.gene001098:CDS 45.0%
! GATGACTTGGGAAGTGAAGT+TGG - chr6.2:15179348-15179367 None:intergenic 45.0%
! GGAACGAAGGGAATTTTGTC+TGG - chr6.2:15178924-15178943 None:intergenic 45.0%
! GGTGGTTCATGATGATGACT+TGG - chr6.2:15179361-15179380 None:intergenic 45.0%
!! ACTTGGACGTTTTGCTGTCA+GGG + chr6.2:15179592-15179611 MS.gene001098:CDS 45.0%
!! CTTATCATTGACTCCACCAC+TGG + chr6.2:15178441-15178460 MS.gene001098:CDS 45.0%
!! TGTTGCTGTTGGTGTCATCA+AGG + chr6.2:15179628-15179647 MS.gene001098:CDS 45.0%
AAATCCGGAGATGGGAACGA+AGG - chr6.2:15178937-15178956 None:intergenic 50.0%
AATCCGGAGATGGGAACGAA+GGG - chr6.2:15178936-15178955 None:intergenic 50.0%
ACAGCAAAACGTCCAAGTGG+AGG - chr6.2:15179590-15179609 None:intergenic 50.0%
ACCAAGATTGACAGGCGATC+TGG + chr6.2:15179461-15179480 MS.gene001098:CDS 50.0%
ACCAGATCGCCTGTCAATCT+TGG - chr6.2:15179465-15179484 None:intergenic 50.0%
ACCAGCTTCAAAACCACCAG+TGG - chr6.2:15178460-15178479 None:intergenic 50.0%
AGCAAAGGTCTCAACCACCA+TGG - chr6.2:15179561-15179580 None:intergenic 50.0%
AGCTTCAAAACCACCAGTGG+TGG - chr6.2:15178457-15178476 None:intergenic 50.0%
AGTGAAGTTGGCAGCTTCCT+TGG - chr6.2:15179336-15179355 None:intergenic 50.0%
ATCCGTTTCCGATCTGTCCA+GGG - chr6.2:15179382-15179401 None:intergenic 50.0%
ATGAACCACCCTGGACAGAT+CGG + chr6.2:15179371-15179390 MS.gene001098:CDS 50.0%
ATTCCCTTCGTTCCCATCTC+CGG + chr6.2:15178930-15178949 MS.gene001098:CDS 50.0%
CAAGGGACCAACTCTTCTTG+AGG + chr6.2:15179001-15179020 MS.gene001098:CDS 50.0%
CACCAACCTTGACTGGTACA+AGG + chr6.2:15178983-15179002 MS.gene001098:CDS 50.0%
CATACCGGGCTTCACAATAC+CGG - chr6.2:15179141-15179160 None:intergenic 50.0%
CATCAAGGCTGTGGAGAAGA+AGG + chr6.2:15179643-15179662 MS.gene001098:CDS 50.0%
CATCTTGCAATGGAAGCCTG+AGG - chr6.2:15179070-15179089 None:intergenic 50.0%
CATGATTACTGGAACCTCCC+AGG + chr6.2:15178404-15178423 MS.gene001098:CDS 50.0%
CTGACAGCAAAACGTCCAAG+TGG - chr6.2:15179593-15179612 None:intergenic 50.0%
CTTAAGGCTGAGCGTGAAAG+AGG + chr6.2:15178288-15178307 MS.gene001098:CDS 50.0%
CTTGTACCAGTCAAGGTTGG+TGG - chr6.2:15178985-15179004 None:intergenic 50.0%
GAAGGATCCTACTGGAGCTA+AGG + chr6.2:15179661-15179680 MS.gene001098:CDS 50.0%
GACTGTGCAGTAGTACTTGG+TGG - chr6.2:15178349-15178368 None:intergenic 50.0%
GATTGACAGGCGATCTGGTA+AGG + chr6.2:15179466-15179485 MS.gene001098:CDS 50.0%
GCAAAGGTCTCAACCACCAT+GGG - chr6.2:15179560-15179579 None:intergenic 50.0%
GCTCTTCCAGGAGACAATGT+CGG + chr6.2:15179236-15179255 MS.gene001098:CDS 50.0%
GTCACCTTCAAATCCGGAGA+TGG - chr6.2:15178946-15178965 None:intergenic 50.0%
GTCATCATCATGAACCACCC+TGG + chr6.2:15179362-15179381 MS.gene001098:CDS 50.0%
GTGGAGAAGAAGGATCCTAC+TGG + chr6.2:15179653-15179672 MS.gene001098:CDS 50.0%
GTTCCCATCTCCGGATTTGA+AGG + chr6.2:15178939-15178958 MS.gene001098:CDS 50.0%
TACCACCCCTAAGTACTCGA+AGG + chr6.2:15178839-15178858 MS.gene001098:CDS 50.0%
TACTGGAGCTAAGGTCACCA+AGG + chr6.2:15179670-15179689 MS.gene001098:CDS 50.0%
TATCCGTTTCCGATCTGTCC+AGG - chr6.2:15179383-15179402 None:intergenic 50.0%
TCACAGCAATGTGAGAGGTG+TGG - chr6.2:15179424-15179443 None:intergenic 50.0%
TCCCTTGTACCAGTCAAGGT+TGG - chr6.2:15178988-15179007 None:intergenic 50.0%
TCTTGCAATGGAAGCCTGAG+GGG - chr6.2:15179068-15179087 None:intergenic 50.0%
TGCACAGTCATTGATGCACC+TGG + chr6.2:15178360-15178379 MS.gene001098:CDS 50.0%
TTGGTCCCTTGTACCAGTCA+AGG - chr6.2:15178992-15179011 None:intergenic 50.0%
! ACCTGGCCTTCGAGTACTTA+GGG - chr6.2:15178848-15178867 None:intergenic 50.0%
! ATGCAAGAAGAGCGTGCTCA+CGG - chr6.2:15178503-15178522 None:intergenic 50.0%
! CCCGGTATGGTTGTGACTTT+TGG + chr6.2:15179152-15179171 MS.gene001098:CDS 50.0%
! GGTATTGGAACTGTGCCAGT+TGG + chr6.2:15179104-15179123 MS.gene001098:CDS 50.0%
! GTCTCTTTGGCTCGTTGATC+TGG - chr6.2:15179034-15179053 None:intergenic 50.0%
! GTTGTGACTTTTGGACCCAC+TGG + chr6.2:15179161-15179180 MS.gene001098:CDS 50.0%
! TACCTGGCCTTCGAGTACTT+AGG - chr6.2:15178849-15178868 None:intergenic 50.0%
! TTGGTGACCTTAGCTCCAGT+AGG - chr6.2:15179671-15179690 None:intergenic 50.0%
!! ATCATTGACTCCACCACTGG+TGG + chr6.2:15178444-15178463 MS.gene001098:CDS 50.0%
!! CACTTGGACGTTTTGCTGTC+AGG + chr6.2:15179591-15179610 MS.gene001098:CDS 50.0%
!! GTCATTGGACATGTCGACTC+TGG + chr6.2:15178135-15178154 MS.gene001098:CDS 50.0%
!! TGTTGGTGTCATCAAGGCTG+TGG + chr6.2:15179634-15179653 MS.gene001098:CDS 50.0%
!!! ACCACTGGTGGTTTTGAAGC+TGG + chr6.2:15178456-15178475 MS.gene001098:CDS 50.0%
AACAGCACAATCAGCCTGGG+AGG - chr6.2:15178421-15178440 None:intergenic 55.0%
AAGTTGGCAGCTTCCTTGGC+AGG - chr6.2:15179332-15179351 None:intergenic 55.0%
AGAGGTCCACCAACCTTGAC+TGG + chr6.2:15178976-15178995 MS.gene001098:CDS 55.0%
AGTTGGCAGCTTCCTTGGCA+GGG - chr6.2:15179331-15179350 None:intergenic 55.0%
CACCCTGGACAGATCGGAAA+CGG + chr6.2:15179377-15179396 MS.gene001098:CDS 55.0%
CCAGTTGGACGTGTTGAGAC+CGG + chr6.2:15179119-15179138 MS.gene001098:CDS 55.0%
CGGTATTGTGAAGCCCGGTA+TGG + chr6.2:15179139-15179158 MS.gene001098:CDS 55.0%
CTTCTTCTTGGCAGCAGCCT+TGG - chr6.2:15179690-15179709 None:intergenic 55.0%
GAGACCGGTATTGTGAAGCC+CGG + chr6.2:15179134-15179153 MS.gene001098:CDS 55.0%
GAGGTGTGGCAATCAAGCAC+TGG - chr6.2:15179410-15179429 None:intergenic 55.0%
GCTCTCACTGAAGCTCTTCC+AGG + chr6.2:15179224-15179243 MS.gene001098:CDS 55.0%
GCTGTGAAGGATCTCAAGCG+TGG + chr6.2:15179278-15179297 MS.gene001098:CDS 55.0%
GGCTTGTCTGTGGGTCTCTT+TGG - chr6.2:15179047-15179066 None:intergenic 55.0%
GTCTGTTGAGATGCACCACG+AGG + chr6.2:15179202-15179221 MS.gene001098:CDS 55.0%
TTCCTTGGCAGGGTCATCCT+TGG - chr6.2:15179321-15179340 None:intergenic 55.0%
! CCTGGCCTTCGAGTACTTAG+GGG - chr6.2:15178847-15178866 None:intergenic 55.0%
! TCAACCACCATGGGCTTGGT+GGG - chr6.2:15179551-15179570 None:intergenic 55.0%
! TGCAAGAAGAGCGTGCTCAC+GGG - chr6.2:15178502-15178521 None:intergenic 55.0%
AAGCCTGAGGGGCTTGTCTG+TGG - chr6.2:15179057-15179076 None:intergenic 60.0%
AGCCTGAGGGGCTTGTCTGT+GGG - chr6.2:15179056-15179075 None:intergenic 60.0%
CCCCTAAGTACTCGAAGGCC+AGG + chr6.2:15178844-15178863 MS.gene001098:CDS 60.0%
CCGGTCTCAACACGTCCAAC+TGG - chr6.2:15179122-15179141 None:intergenic 60.0%
CGTTTCCGATCTGTCCAGGG+TGG - chr6.2:15179379-15179398 None:intergenic 60.0%
CTCAACCACCATGGGCTTGG+TGG - chr6.2:15179552-15179571 None:intergenic 60.0%
CTCCAAGGATGACCCTGCCA+AGG + chr6.2:15179316-15179335 MS.gene001098:CDS 60.0%
GAGCTTCAGTGAGAGCCTCG+TGG - chr6.2:15179220-15179239 None:intergenic 60.0%
GATGGTTCCCACCAAGCCCA+TGG + chr6.2:15179541-15179560 MS.gene001098:CDS 60.0%
GGCAGGGTCATCCTTGGAGT+TGG - chr6.2:15179315-15179334 None:intergenic 60.0%
GGCCTTCGAGTACTTAGGGG+TGG - chr6.2:15178844-15178863 None:intergenic 60.0%
GGTCTCAACCACCATGGGCT+TGG - chr6.2:15179555-15179574 None:intergenic 60.0%
GACCCACAGACAAGCCCCTC+AGG + chr6.2:15179051-15179070 MS.gene001098:CDS 65.0%
GGTTCCCACCAAGCCCATGG+TGG + chr6.2:15179544-15179563 MS.gene001098:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 15178102 15179712 15178102 ID=MS.gene001098
chr6.2 mRNA 15178102 15179712 15178102 ID=MS.gene001098.t1;Parent=MS.gene001098
chr6.2 exon 15178102 15178563 15178102 ID=MS.gene001098.t1.exon1;Parent=MS.gene001098.t1
chr6.2 CDS 15178102 15178563 15178102 ID=cds.MS.gene001098.t1;Parent=MS.gene001098.t1
chr6.2 exon 15178831 15179712 15178831 ID=MS.gene001098.t1.exon2;Parent=MS.gene001098.t1
chr6.2 CDS 15178831 15179712 15178831 ID=cds.MS.gene001098.t1;Parent=MS.gene001098.t1
Gene Sequence

>MS.gene001098

ATGGGAAAAGAAAAGATTCATATCAACATTGTCGTCATTGGACATGTCGACTCTGGAAAATCAACAACAACTGGTCACTTGATCTACAAGCTAGGAGGTATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTACGCATGGGTTCTTGACAAACTTAAGGCTGAGCGTGAAAGAGGAATTACCATCGATATTGCCTTGTGGAAATTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCACCTGGACATCGTGATTTCATCAAGAACATGATTACTGGAACCTCCCAGGCTGATTGTGCTGTTCTTATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCCGTGAGCACGCTCTTCTTGCATTTACTCTTGGAGTGAAGCAGATGATCTGTTGTTGTAACAAGGTAAATTTCGTAGATCTTTTCTATGTGTAAAATTGCAATAATTTATTACTAAATATGTTGAGTTGCAGGTTGTGAAATTAGTTACAGTCTGTTAAGGAACATCATTATAATATTATAATATTTATTTGTTATGTTTATTTGCTGATTCTGACTTTGGTATGTATATTTTGATTTTGTTACAATCTATTGTGTATGTACATTATTTTAATTTTTTATATGTTATATCTAGTTGTAGATTCTGACTTTGGTTTCAATATTTTGTTTCAGATGGATGCTACCACCCCTAAGTACTCGAAGGCCAGGTACGATGAAATCGTGAAGGAAGTTTCATCCTACTTGAAGAAGGTTGGTTACAACCCAGACAAAATTCCCTTCGTTCCCATCTCCGGATTTGAAGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTTCTTGAGGCTCTTGACCAGATCAACGAGCCAAAGAGACCCACAGACAAGCCCCTCAGGCTTCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGAACTGTGCCAGTTGGACGTGTTGAGACCGGTATTGTGAAGCCCGGTATGGTTGTGACTTTTGGACCCACTGGATTGACAACTGAAGTTAAGTCTGTTGAGATGCACCACGAGGCTCTCACTGAAGCTCTTCCAGGAGACAATGTCGGATTCAATGTTAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTTCGTTGCATCCAACTCCAAGGATGACCCTGCCAAGGAAGCTGCCAACTTCACTTCCCAAGTCATCATCATGAACCACCCTGGACAGATCGGAAACGGATATGCTCCAGTGCTTGATTGCCACACCTCTCACATTGCTGTGAAGTTTGCTGAACTTGTTACCAAGATTGACAGGCGATCTGGTAAGGAGATTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGTATCATTAAGATGGTTCCCACCAAGCCCATGGTGGTTGAGACCTTTGCTGAATATCCTCCACTTGGACGTTTTGCTGTCAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGGCTGTGGAGAAGAAGGATCCTACTGGAGCTAAGGTCACCAAGGCTGCTGCCAAGAAGAAGTAA

Protein sequence

>MS.gene001098.t1

MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIVKPGMVVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAAKKK