AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34006


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34006.t1 MTR_1g495705 99.554 448 2 0 1 448 1 448 0.0 916
MS.gene34006.t1 MTR_1g095650 99.554 448 2 0 1 448 1 448 0.0 916
MS.gene34006.t1 MTR_1g095703 99.330 448 3 0 1 448 1 448 0.0 915
MS.gene34006.t1 MTR_6g021800 96.652 448 14 1 1 448 1 447 0.0 896
MS.gene34006.t1 MTR_6g021805 96.652 448 14 1 1 448 1 447 0.0 896
MS.gene34006.t1 MTR_4g014810 96.205 448 16 1 1 448 1 447 0.0 890
MS.gene34006.t1 MTR_1g013680 95.565 451 17 1 1 448 1 451 0.0 879
MS.gene34006.t1 MTR_1g085410 81.674 442 81 0 1 442 1 442 0.0 746
MS.gene34006.t1 MTR_1g101870 82.151 437 73 3 1 437 1 432 0.0 736
MS.gene34006.t1 MTR_1g101870 82.151 437 73 3 1 437 1 432 0.0 734
MS.gene34006.t1 MTR_1g024175 79.263 434 90 0 1 434 1 434 0.0 728
MS.gene34006.t1 MTR_8g014590 79.733 449 89 1 1 447 1 449 0.0 723
MS.gene34006.t1 MTR_1g095650 99.424 347 2 0 102 448 1 347 0.0 708
MS.gene34006.t1 MTR_2g082730 72.644 435 102 2 1 433 1 420 0.0 645
MS.gene34006.t1 MTR_5g037350 67.660 470 115 1 3 435 13 482 0.0 634
MS.gene34006.t1 MTR_1g089520 71.395 430 105 3 4 432 5 417 0.0 627
MS.gene34006.t1 MTR_2g082665 67.586 435 98 2 1 433 1 394 0.0 587
MS.gene34006.t1 MTR_2g037420 65.820 433 105 3 1 431 1 392 0.0 563
MS.gene34006.t1 MTR_2g080210 63.839 448 119 5 1 445 1 408 0.0 551
MS.gene34006.t1 MTR_8g013910 63.920 449 127 5 1 433 1 430 0.0 551
MS.gene34006.t1 MTR_8g008740 78.462 325 69 1 1 324 1 325 0.0 539
MS.gene34006.t1 MTR_1g112460 66.443 298 59 4 155 447 1 262 2.52e-128 372
MS.gene34006.t1 MTR_1g495735 76.119 201 38 1 240 430 106 306 1.46e-100 303
MS.gene34006.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 5.46e-17 81.6
MS.gene34006.t1 MTR_6g080420 37.963 432 254 6 5 428 89 514 6.09e-97 301
MS.gene34006.t1 MTR_8g106700 37.963 432 258 6 4 429 49 476 7.36e-94 291
MS.gene34006.t1 MTR_8g106700 37.963 432 258 6 4 429 43 470 9.95e-94 291
MS.gene34006.t1 MTR_8g106700 37.963 432 258 6 4 429 70 497 1.86e-93 291
MS.gene34006.t1 MTR_8g087950 36.028 433 268 6 7 433 275 704 2.65e-91 291
MS.gene34006.t1 MTR_8g087950 36.028 433 268 6 7 433 348 777 2.21e-90 291
MS.gene34006.t1 MTR_1g101880 87.013 154 20 0 1 154 1 154 6.53e-90 274
MS.gene34006.t1 MTR_4g054970 57.025 242 75 4 193 431 50 265 6.41e-81 251
MS.gene34006.t1 MTR_4g054970 75.000 44 11 0 1 44 1 44 7.81e-13 68.9
MS.gene34006.t1 MTR_1g024165 81.429 140 26 0 6 145 10 149 1.45e-78 241
MS.gene34006.t1 MTR_8g014950 76.471 102 24 0 3 104 4 105 1.65e-47 159
MS.gene34006.t1 MTR_7g094460 30.365 438 245 14 3 429 59 447 1.59e-45 164
MS.gene34006.t1 MTR_7g098190 53.892 167 51 5 56 220 10 152 7.51e-43 149
MS.gene34006.t1 MTR_2g021300 29.613 439 247 12 3 429 46 434 5.26e-42 154
MS.gene34006.t1 MTR_3g076660 29.955 444 250 15 3 429 88 487 1.61e-40 151
MS.gene34006.t1 MTR_8g014960 64.634 82 29 0 213 294 2 83 2.64e-28 110
MS.gene34006.t1 MTR_3g097250 26.471 272 143 9 9 272 85 307 1.38e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34006.t1 AT5G60390 95.302 447 20 1 1 447 1 446 0.0 884
MS.gene34006.t1 AT5G60390 95.302 447 20 1 1 447 1 446 0.0 884
MS.gene34006.t1 AT5G60390 95.302 447 20 1 1 447 1 446 0.0 884
MS.gene34006.t1 AT1G07920 95.302 447 20 1 1 447 1 446 0.0 884
MS.gene34006.t1 AT1G07940 95.302 447 20 1 1 447 1 446 0.0 884
MS.gene34006.t1 AT1G07940 95.302 447 20 1 1 447 1 446 0.0 884
MS.gene34006.t1 AT1G07940 95.302 447 20 1 1 447 1 446 0.0 884
MS.gene34006.t1 AT1G07940 95.302 447 20 1 1 447 1 446 0.0 884
MS.gene34006.t1 AT1G07930 95.302 447 20 1 1 447 1 446 0.0 884
MS.gene34006.t1 AT1G07930 98.824 255 3 0 1 255 1 255 0.0 530
MS.gene34006.t1 AT1G07930 88.034 117 13 1 331 447 254 369 1.10e-65 215
MS.gene34006.t1 AT1G18070 37.647 425 257 5 5 424 99 520 3.39e-94 294
MS.gene34006.t1 AT1G18070 37.647 425 257 5 5 424 99 520 3.39e-94 294
MS.gene34006.t1 AT1G18070 36.927 436 256 6 5 424 99 531 3.96e-91 286
MS.gene34006.t1 AT5G10630 35.765 425 265 5 7 426 239 660 2.20e-90 288
MS.gene34006.t1 AT5G10630 35.765 425 265 5 7 426 240 661 2.25e-90 288
MS.gene34006.t1 AT5G10630 35.765 425 265 5 7 426 240 661 2.25e-90 288
MS.gene34006.t1 AT5G10630 35.765 425 265 5 7 426 310 731 1.28e-89 288
MS.gene34006.t1 AT5G10630 35.765 425 265 5 7 426 315 736 1.34e-89 288
MS.gene34006.t1 AT1G35550 78.641 103 22 0 335 437 1 103 1.58e-53 174
MS.gene34006.t1 AT4G02930 30.296 439 245 15 3 429 63 452 7.25e-44 160
MS.gene34006.t1 AT4G20360 30.137 438 257 10 3 429 75 474 1.66e-43 159
MS.gene34006.t1 AT4G20360 30.137 438 257 10 3 429 75 474 1.66e-43 159
MS.gene34006.t1 AT2G31060 25.000 264 160 8 9 263 61 295 3.22e-12 68.9
MS.gene34006.t1 AT5G08650 26.667 270 145 10 9 272 88 310 2.25e-11 66.6
MS.gene34006.t1 AT5G08650 26.667 270 145 10 9 272 88 310 2.32e-11 66.2
MS.gene34006.t1 AT2G31060 24.615 260 162 7 9 263 61 291 4.64e-11 65.5

Find 148 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCATTCTTCAAGAATT+TGG 0.066665 1.4:+74372781 None:intergenic
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 1.4:-74373625 MS.gene34006:CDS
GTCTACAAGATTGGAGGAAT+TGG 0.315206 1.4:-74373196 MS.gene34006:CDS
GCCTCTTAGGCTCATTGATT+TGG 0.315866 1.4:+74373254 None:intergenic
TGTCAAGAATGTTGCTGTTA+AGG 0.325240 1.4:-74373020 MS.gene34006:CDS
TCACCATTCTTCAAGAATTT+GGG 0.331757 1.4:+74372782 None:intergenic
ATAGCCAACCTTCTTCAAAT+AGG 0.332380 1.4:+74373390 None:intergenic
ATTCCATTTGTTCCCATCTC+TGG 0.368209 1.4:-74373355 MS.gene34006:CDS
AAGCTCGCAGCCTCCTTGGC+TGG 0.368924 1.4:+74372956 None:intergenic
CTTCTTCTTCAATGCTGACT+TGG 0.371330 1.4:+74372595 None:intergenic
CTCCTTGGCTGGGTCATCCT+TGG 0.371873 1.4:+74372967 None:intergenic
ATATCTACCCTTGGAGTACT+TGG 0.380807 1.4:+74373438 None:intergenic
ACTAAGATTGATAGGCGTTC+TGG 0.382761 1.4:-74372824 MS.gene34006:CDS
GCTCTAACAGAGGCCCTTCC+TGG 0.389893 1.4:-74373061 MS.gene34006:CDS
GGATCCCAGTGGAGGACTTA+AGG 0.415493 1.4:-74372621 MS.gene34006:CDS
GCAAAAGTGACAACCATTCC+AGG 0.418006 1.4:+74373133 None:intergenic
CTCATCATTGATTCCACTAC+TGG 0.419293 1.4:-74373694 MS.gene34006:CDS
GAGGTGTGGCAGTCAAGAAC+AGG 0.420700 1.4:+74372878 None:intergenic
ATGAATCACCCTGGCCAGAT+TGG 0.425183 1.4:-74372914 MS.gene34006:CDS
CCTGTGGGGCGTGTCGAGAC+TGG 0.431830 1.4:-74373166 MS.gene34006:CDS
CACCCTGGCCAGATTGGAAA+TGG 0.432985 1.4:-74372908 MS.gene34006:CDS
GCCCCTTCGACTACCACTTC+AGG 0.433104 1.4:-74373221 MS.gene34006:CDS
GTCATCGGCCATGTTGACTC+TGG 0.440627 1.4:-74374000 MS.gene34006:CDS
AGGACTAATGGGTAAGGAAA+AGG 0.440646 1.4:-74374040 None:intergenic
AGCGTTCATTCAAGTATGCC+TGG 0.444655 1.4:-74373882 MS.gene34006:CDS
GGGCATAGCCATTTCCAATC+TGG 0.448022 1.4:+74372900 None:intergenic
AGCTCGCAGCCTCCTTGGCT+GGG 0.449031 1.4:+74372957 None:intergenic
AAACCAGAGATGGGAACAAA+TGG 0.449170 1.4:+74373352 None:intergenic
ACTTCAGTTGTCAGTCCAGT+AGG 0.456008 1.4:+74373109 None:intergenic
CTTCAGGATGTCTACAAGAT+TGG 0.458119 1.4:-74373205 MS.gene34006:CDS
AGTCTCAACCACCATGGGCT+TGG 0.462350 1.4:+74372733 None:intergenic
ACCAAATCAATGAGCCTAAG+AGG 0.463105 1.4:-74373255 MS.gene34006:CDS
TGGGTCATCCTTGGAGTTTG+AGG 0.465051 1.4:+74372976 None:intergenic
CTCAACCACCATGGGCTTGG+TGG 0.468734 1.4:+74372736 None:intergenic
TAGGCTCATTGATTTGGTCA+AGG 0.472707 1.4:+74373260 None:intergenic
GGCTTGTCTGAAGGCCTCTT+AGG 0.473139 1.4:+74373241 None:intergenic
TAGCCATTTCCAATCTGGCC+AGG 0.474048 1.4:+74372905 None:intergenic
AGGCTCATTGATTTGGTCAA+GGG 0.475242 1.4:+74373261 None:intergenic
TGCACTGTCATTGATGCCCC+TGG 0.477178 1.4:-74373775 MS.gene34006:CDS
TTAATGAAATCCCTGTGTCC+AGG 0.479234 1.4:+74373757 None:intergenic
TCACCATTGACATTGCTCTC+TGG 0.481623 1.4:-74373822 MS.gene34006:CDS
AGCTTGTTACTAAGATTGAT+AGG 0.481965 1.4:-74372832 MS.gene34006:CDS
ACAGTCAGCTTGGGATGTTC+CGG 0.483896 1.4:+74373723 None:intergenic
TACAAACCTTGACTGGTACA+AGG 0.490199 1.4:-74373302 MS.gene34006:CDS
TCATCCTATTTGAAGAAGGT+TGG 0.491235 1.4:-74373394 MS.gene34006:CDS
GATTGATAGGCGTTCTGGTA+AGG 0.495592 1.4:-74372819 MS.gene34006:CDS
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 1.4:+74373342 None:intergenic
TGAGAACGGCACAGTCAGCT+TGG 0.498317 1.4:+74373713 None:intergenic
CTGACCATCCTTAGAAATAC+CGG 0.501461 1.4:+74373660 None:intergenic
AGTTTCATCCTATTTGAAGA+AGG 0.501588 1.4:-74373398 MS.gene34006:CDS
ATCATTGATTCCACTACTGG+TGG 0.502099 1.4:-74373691 MS.gene34006:CDS
GAGAACGGCACAGTCAGCTT+GGG 0.505334 1.4:+74373714 None:intergenic
CTTCAGTTGTCAGTCCAGTA+GGG 0.506099 1.4:+74373110 None:intergenic
AGTAAAGCTCGCAGCCTCCT+TGG 0.506205 1.4:+74372952 None:intergenic
AATTTCATCATATCTACCCT+TGG 0.508007 1.4:+74373429 None:intergenic
AATGACAGTGCAGTAGTACT+TGG 0.509426 1.4:+74373786 None:intergenic
CATCAAGGCTGTGGAGAAGA+AGG 0.510945 1.4:-74372642 MS.gene34006:CDS
AGGAATTGGAACTGTGCCTG+TGG 0.517140 1.4:-74373182 MS.gene34006:CDS
GGTCACCTTAAGTCCTCCAC+TGG 0.520286 1.4:+74372616 None:intergenic
CAGGATGTCTACAAGATTGG+AGG 0.523217 1.4:-74373202 MS.gene34006:CDS
TAATGAAATCCCTGTGTCCA+GGG 0.528272 1.4:+74373758 None:intergenic
GAGCCCAAATTCTTGAAGAA+TGG 0.528480 1.4:-74372785 MS.gene34006:CDS
TCCCACATTGTCACCAGGAA+GGG 0.528721 1.4:+74373048 None:intergenic
CATTGATGCCCCTGGACACA+GGG 0.535845 1.4:-74373767 MS.gene34006:CDS
GGAATTGGAACTGTGCCTGT+GGG 0.536194 1.4:-74373181 MS.gene34006:CDS
TCATTGATGCCCCTGGACAC+AGG 0.539611 1.4:-74373768 MS.gene34006:CDS
CTTCCAGAGAGCAATGTCAA+TGG 0.541189 1.4:+74373819 None:intergenic
CATATCAACATTGTGGTCAT+CGG 0.541947 1.4:-74374015 MS.gene34006:CDS
AGTCGAAGGGGCTTGTCTGA+AGG 0.542120 1.4:+74373232 None:intergenic
CACTTGATCTACAAGCTTGG+AGG 0.545798 1.4:-74373958 MS.gene34006:CDS
GGCTTCAAAACCACCAGTAG+TGG 0.551737 1.4:+74373681 None:intergenic
TGTGGCTGTTGGCGTCATCA+AGG 0.552638 1.4:-74372657 MS.gene34006:CDS
GGTCACTTGATCTACAAGCT+TGG 0.555547 1.4:-74373961 MS.gene34006:CDS
CCAGTCTCGACACGCCCCAC+AGG 0.557031 1.4:+74373166 None:intergenic
TCAAGGGCCTCAAGAAGGGT+TGG 0.557590 1.4:+74373277 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.557624 1.4:+74372737 None:intergenic
TTGGTCAAGGGCCTCAAGAA+GGG 0.558003 1.4:+74373273 None:intergenic
TTGGACCCTTGTACCAGTCA+AGG 0.558366 1.4:+74373296 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 1.4:+74373635 None:intergenic
CTCAAGGCTGAACGTGAAAG+AGG 0.559327 1.4:-74373847 MS.gene34006:CDS
TTTGGTCAAGGGCCTCAAGA+AGG 0.560467 1.4:+74373272 None:intergenic
TTCTTGAAGAATGGTGATGC+TGG 0.561159 1.4:-74372776 MS.gene34006:CDS
TCTGGGAAATCAACCACCAC+TGG 0.562550 1.4:-74373982 MS.gene34006:CDS
GAAGCCGGTATTTCTAAGGA+TGG 0.564413 1.4:-74373664 MS.gene34006:CDS
ACAAACCTTGACTGGTACAA+GGG 0.567625 1.4:-74373301 MS.gene34006:CDS
TCATCGGCCATGTTGACTCT+GGG 0.571507 1.4:-74373999 MS.gene34006:CDS
TTCATTAAGAACATGATCAC+CGG 0.572337 1.4:-74373742 MS.gene34006:CDS
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 1.4:+74373636 None:intergenic
AGCGCTCTACAAACCTTGAC+TGG 0.575793 1.4:-74373309 MS.gene34006:CDS
GAGAAAGTCTCAACCACCAT+GGG 0.575954 1.4:+74372728 None:intergenic
ATCCTGAAGTGGTAGTCGAA+GGG 0.576252 1.4:+74373219 None:intergenic
CTTGAGCTTGTCAAGGACCC+AGG 0.577041 1.4:+74373864 None:intergenic
TATCTACCCTTGGAGTACTT+GGG 0.580849 1.4:+74373439 None:intergenic
TTGACAAGCGTGTCATTGAG+AGG 0.584549 1.4:-74373933 MS.gene34006:CDS
ATCCCACATTGTCACCAGGA+AGG 0.585536 1.4:+74373047 None:intergenic
GAGACTGGTGTCATAAAACC+TGG 0.585699 1.4:-74373151 MS.gene34006:CDS
CTGGGTCCTTGACAAGCTCA+AGG 0.585742 1.4:-74373863 MS.gene34006:CDS
GGCCCTTCCTGGTGACAATG+TGG 0.586985 1.4:-74373050 MS.gene34006:CDS
CTGTTAAGGATCTCAAGCGT+GGG 0.589274 1.4:-74373006 MS.gene34006:CDS
CATCCTGAAGTGGTAGTCGA+AGG 0.591035 1.4:+74373218 None:intergenic
TTCTCTGAATATCCTCCACT+CGG 0.591172 1.4:-74372710 MS.gene34006:CDS
GCCCTTCCTGGTGACAATGT+GGG 0.592402 1.4:-74373049 MS.gene34006:CDS
TTGATTTCCCAGAGTCAACA+TGG 0.596206 1.4:+74373992 None:intergenic
TAGATATGATGAAATTGTGA+AGG 0.599770 1.4:-74373422 MS.gene34006:CDS
GCATGTCTCTAACAGCAAAA+CGG 0.600985 1.4:+74372687 None:intergenic
CTCCAAGGATGACCCAGCCA+AGG 0.602045 1.4:-74372969 MS.gene34006:CDS
GCGTTCATTCAAGTATGCCT+GGG 0.605879 1.4:-74373881 MS.gene34006:CDS
GTCACCTTAAGTCCTCCACT+GGG 0.606003 1.4:+74372617 None:intergenic
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 1.4:+74373343 None:intergenic
GATGATTCCCACCAAGCCCA+TGG 0.611182 1.4:-74372744 MS.gene34006:CDS
TACTACACCCAAGTACTCCA+AGG 0.613862 1.4:-74373446 MS.gene34006:CDS
AAAGGTTCATATCAACATTG+TGG 0.619488 1.4:-74374022 MS.gene34006:CDS
CAAGGGTCCAACCCTTCTTG+AGG 0.620566 1.4:-74373284 MS.gene34006:CDS
TCACACCAAGAGTGAAAGCA+AGG 0.621193 1.4:+74373620 None:intergenic
ATCTTGTAGACATCCTGAAG+TGG 0.621388 1.4:+74373208 None:intergenic
GCTGTTAAGGATCTCAAGCG+TGG 0.622485 1.4:-74373007 MS.gene34006:CDS
TGTTGGCGTCATCAAGGCTG+TGG 0.622557 1.4:-74372651 MS.gene34006:CDS
TTCAGTTGTCAGTCCAGTAG+GGG 0.622733 1.4:+74373111 None:intergenic
AGCCATTTCCAATCTGGCCA+GGG 0.623271 1.4:+74372906 None:intergenic
GACAACTGAAGTCAAGTCTG+TGG 0.624055 1.4:-74373098 MS.gene34006:CDS
ACAGCAAAACGGCCGAGTGG+AGG 0.624787 1.4:+74372698 None:intergenic
TGGTGTCATAAAACCTGGAA+TGG 0.625384 1.4:-74373146 MS.gene34006:CDS
TCCTGAAGTGGTAGTCGAAG+GGG 0.627928 1.4:+74373220 None:intergenic
AGGTGTGGCAGTCAAGAACA+GGG 0.628146 1.4:+74372879 None:intergenic
GTTCAGCCTTGAGCTTGTCA+AGG 0.628494 1.4:+74373857 None:intergenic
GCATCATGAAGCTCTAACAG+AGG 0.633418 1.4:-74373071 MS.gene34006:CDS
GTATGTTGCCTCAAACTCCA+AGG 0.633897 1.4:-74372984 MS.gene34006:CDS
AGAGAAAGTCTCAACCACCA+TGG 0.641605 1.4:+74372727 None:intergenic
ATGCGTCAAACTGTGGCTGT+TGG 0.643159 1.4:-74372668 MS.gene34006:CDS
TTCTGGTAAGGAGATTGAGA+AGG 0.643722 1.4:-74372807 MS.gene34006:CDS
GAATTGGAACTGTGCCTGTG+GGG 0.644316 1.4:-74373180 MS.gene34006:CDS
AGTGGAATCAATGATGAGAA+CGG 0.644693 1.4:+74373699 None:intergenic
AAACTTGACAGCAATGTGAG+AGG 0.653594 1.4:+74372859 None:intergenic
AATGAAATCCCTGTGTCCAG+GGG 0.656838 1.4:+74373759 None:intergenic
TTAAATCCCACATTGTCACC+AGG 0.657091 1.4:+74373043 None:intergenic
AATGATCTGCTGTTGCAACA+AGG 0.659392 1.4:-74373593 MS.gene34006:intron
CAAGGATGACCCAGCCAAGG+AGG 0.659665 1.4:-74372966 MS.gene34006:CDS
GAGAAGAAGGATCCCAGTGG+AGG 0.667988 1.4:-74372629 MS.gene34006:CDS
ACTACACCCAAGTACTCCAA+GGG 0.678033 1.4:-74373445 MS.gene34006:CDS
CTTGTAGATCAAGTGACCAG+TGG 0.682705 1.4:+74373966 None:intergenic
TAGAGACATGCGTCAAACTG+TGG 0.690315 1.4:-74372675 MS.gene34006:CDS
CTAACAGCAAAACGGCCGAG+TGG 0.692072 1.4:+74372695 None:intergenic
GTAGATCAAGTGACCAGTGG+TGG 0.699002 1.4:+74373969 None:intergenic
GTGATCATAATGAATCACCC+TGG 0.699056 1.4:-74372923 MS.gene34006:CDS
GATTCCCACCAAGCCCATGG+TGG 0.723849 1.4:-74372741 MS.gene34006:CDS
GGTGTGGCAGTCAAGAACAG+GGG 0.727394 1.4:+74372880 None:intergenic
TGACAGCAATGTGAGAGGTG+TGG 0.729691 1.4:+74372864 None:intergenic
GTGGAGAAGAAGGATCCCAG+TGG 0.734762 1.4:-74372632 MS.gene34006:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATATACAACTTCAA+GGG + chr1.4:74373075-74373094 None:intergenic 20.0%
!! TAATCAAATATACAACTTCA+AGG + chr1.4:74373076-74373095 None:intergenic 20.0%
! ATCAAATATACAACTTCAAG+GGG + chr1.4:74373074-74373093 None:intergenic 25.0%
! TAGATATGATGAAATTGTGA+AGG - chr1.4:74373203-74373222 MS.gene34006:CDS 25.0%
AAAGGTTCATATCAACATTG+TGG - chr1.4:74372603-74372622 MS.gene34006:CDS 30.0%
AATTTCATCATATCTACCCT+TGG + chr1.4:74373199-74373218 None:intergenic 30.0%
AGTTTCATCCTATTTGAAGA+AGG - chr1.4:74373227-74373246 MS.gene34006:CDS 30.0%
ATCACCATTCTTCAAGAATT+TGG + chr1.4:74373847-74373866 None:intergenic 30.0%
TCACCATTCTTCAAGAATTT+GGG + chr1.4:74373846-74373865 None:intergenic 30.0%
TTCATTAAGAACATGATCAC+CGG - chr1.4:74372883-74372902 MS.gene34006:CDS 30.0%
! GAACAAATGGAATTTTGTCT+GGG + chr1.4:74373263-74373282 None:intergenic 30.0%
!! AGCTTGTTACTAAGATTGAT+AGG - chr1.4:74373793-74373812 MS.gene34006:CDS 30.0%
AGTGGAATCAATGATGAGAA+CGG + chr1.4:74372929-74372948 None:intergenic 35.0%
ATAGCCAACCTTCTTCAAAT+AGG + chr1.4:74373238-74373257 None:intergenic 35.0%
ATCCATCTGTTCAAGATAGA+TGG + chr1.4:74373157-74373176 None:intergenic 35.0%
CATATCAACATTGTGGTCAT+CGG - chr1.4:74372610-74372629 MS.gene34006:CDS 35.0%
TCATCCTATTTGAAGAAGGT+TGG - chr1.4:74373231-74373250 MS.gene34006:CDS 35.0%
! GGAACAAATGGAATTTTGTC+TGG + chr1.4:74373264-74373283 None:intergenic 35.0%
! TGTCAAGAATGTTGCTGTTA+AGG - chr1.4:74373605-74373624 MS.gene34006:CDS 35.0%
!!! TTTTGAAGCCGGTATTTCTA+AGG - chr1.4:74372957-74372976 MS.gene34006:CDS 35.0%
AAACCAGAGATGGGAACAAA+TGG + chr1.4:74373276-74373295 None:intergenic 40.0%
AAACTTGACAGCAATGTGAG+AGG + chr1.4:74373769-74373788 None:intergenic 40.0%
AATGACAGTGCAGTAGTACT+TGG + chr1.4:74372842-74372861 None:intergenic 40.0%
AATGATCTGCTGTTGCAACA+AGG - chr1.4:74373032-74373051 MS.gene34006:CDS 40.0%
ACAAACCTTGACTGGTACAA+GGG - chr1.4:74373324-74373343 MS.gene34006:CDS 40.0%
ACCAAATCAATGAGCCTAAG+AGG - chr1.4:74373370-74373389 MS.gene34006:CDS 40.0%
ACTAAGATTGATAGGCGTTC+TGG - chr1.4:74373801-74373820 MS.gene34006:CDS 40.0%
ATCTTGTAGACATCCTGAAG+TGG + chr1.4:74373420-74373439 None:intergenic 40.0%
ATTCCATTTGTTCCCATCTC+TGG - chr1.4:74373270-74373289 MS.gene34006:CDS 40.0%
CTGACCATCCTTAGAAATAC+CGG + chr1.4:74372968-74372987 None:intergenic 40.0%
CTTCAGGATGTCTACAAGAT+TGG - chr1.4:74373420-74373439 MS.gene34006:CDS 40.0%
GAGCCCAAATTCTTGAAGAA+TGG - chr1.4:74373840-74373859 MS.gene34006:CDS 40.0%
GCATGTCTCTAACAGCAAAA+CGG + chr1.4:74373941-74373960 None:intergenic 40.0%
GTCTACAAGATTGGAGGAAT+TGG - chr1.4:74373429-74373448 MS.gene34006:CDS 40.0%
GTGATCATAATGAATCACCC+TGG - chr1.4:74373702-74373721 MS.gene34006:CDS 40.0%
TAATGAAATCCCTGTGTCCA+GGG + chr1.4:74372870-74372889 None:intergenic 40.0%
TACAAACCTTGACTGGTACA+AGG - chr1.4:74373323-74373342 MS.gene34006:CDS 40.0%
TGCCATCTATCTTGAACAGA+TGG - chr1.4:74373152-74373171 MS.gene34006:CDS 40.0%
TTAAATCCCACATTGTCACC+AGG + chr1.4:74373585-74373604 None:intergenic 40.0%
TTAATGAAATCCCTGTGTCC+AGG + chr1.4:74372871-74372890 None:intergenic 40.0%
TTCTCTGAATATCCTCCACT+CGG - chr1.4:74373915-74373934 MS.gene34006:CDS 40.0%
TTCTGGTAAGGAGATTGAGA+AGG - chr1.4:74373818-74373837 MS.gene34006:CDS 40.0%
TTGATTTCCCAGAGTCAACA+TGG + chr1.4:74372636-74372655 None:intergenic 40.0%
! ATATCTACCCTTGGAGTACT+TGG + chr1.4:74373190-74373209 None:intergenic 40.0%
! CTTCTTCTTCAATGCTGACT+TGG + chr1.4:74374033-74374052 None:intergenic 40.0%
! TATCTACCCTTGGAGTACTT+GGG + chr1.4:74373189-74373208 None:intergenic 40.0%
! TTCTTGAAGAATGGTGATGC+TGG - chr1.4:74373849-74373868 MS.gene34006:CDS 40.0%
!! AGGCTCATTGATTTGGTCAA+GGG + chr1.4:74373367-74373386 None:intergenic 40.0%
!! ATCATTGATTCCACTACTGG+TGG - chr1.4:74372934-74372953 MS.gene34006:CDS 40.0%
!! CTCATCATTGATTCCACTAC+TGG - chr1.4:74372931-74372950 MS.gene34006:CDS 40.0%
!! TAGGCTCATTGATTTGGTCA+AGG + chr1.4:74373368-74373387 None:intergenic 40.0%
!! TGGTGTCATAAAACCTGGAA+TGG - chr1.4:74373479-74373498 MS.gene34006:intron 40.0%
AATGAAATCCCTGTGTCCAG+GGG + chr1.4:74372869-74372888 None:intergenic 45.0%
ACTACACCCAAGTACTCCAA+GGG - chr1.4:74373180-74373199 MS.gene34006:CDS 45.0%
ACTTCAGTTGTCAGTCCAGT+AGG + chr1.4:74373519-74373538 None:intergenic 45.0%
AGAGAAAGTCTCAACCACCA+TGG + chr1.4:74373901-74373920 None:intergenic 45.0%
AGCGTTCATTCAAGTATGCC+TGG - chr1.4:74372743-74372762 MS.gene34006:CDS 45.0%
ATCCTGAAGTGGTAGTCGAA+GGG + chr1.4:74373409-74373428 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG + chr1.4:74373286-74373305 None:intergenic 45.0%
CACTTGATCTACAAGCTTGG+AGG - chr1.4:74372667-74372686 MS.gene34006:CDS 45.0%
CAGGATGTCTACAAGATTGG+AGG - chr1.4:74373423-74373442 MS.gene34006:CDS 45.0%
CTGTTAAGGATCTCAAGCGT+GGG - chr1.4:74373619-74373638 MS.gene34006:CDS 45.0%
CTTCAGTTGTCAGTCCAGTA+GGG + chr1.4:74373518-74373537 None:intergenic 45.0%
CTTCCAGAGAGCAATGTCAA+TGG + chr1.4:74372809-74372828 None:intergenic 45.0%
CTTGTAGATCAAGTGACCAG+TGG + chr1.4:74372662-74372681 None:intergenic 45.0%
GACAACTGAAGTCAAGTCTG+TGG - chr1.4:74373527-74373546 MS.gene34006:intron 45.0%
GAGAAAGTCTCAACCACCAT+GGG + chr1.4:74373900-74373919 None:intergenic 45.0%
GATTGATAGGCGTTCTGGTA+AGG - chr1.4:74373806-74373825 MS.gene34006:CDS 45.0%
GCAAAAGTGACAACCATTCC+AGG + chr1.4:74373495-74373514 None:intergenic 45.0%
GCGTTCATTCAAGTATGCCT+GGG - chr1.4:74372744-74372763 MS.gene34006:CDS 45.0%
GGTCACTTGATCTACAAGCT+TGG - chr1.4:74372664-74372683 MS.gene34006:CDS 45.0%
GTATGTTGCCTCAAACTCCA+AGG - chr1.4:74373641-74373660 MS.gene34006:CDS 45.0%
TACTACACCCAAGTACTCCA+AGG - chr1.4:74373179-74373198 MS.gene34006:CDS 45.0%
TAGAGACATGCGTCAAACTG+TGG - chr1.4:74373950-74373969 MS.gene34006:CDS 45.0%
TCACACCAAGAGTGAAAGCA+AGG + chr1.4:74373008-74373027 None:intergenic 45.0%
TCACCATTGACATTGCTCTC+TGG - chr1.4:74372803-74372822 MS.gene34006:CDS 45.0%
TCTCCCTCAAAACCAGAGAT+GGG + chr1.4:74373285-74373304 None:intergenic 45.0%
TTCAGTTGTCAGTCCAGTAG+GGG + chr1.4:74373517-74373536 None:intergenic 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG + chr1.4:74372993-74373012 None:intergenic 45.0%
! GAAGCCGGTATTTCTAAGGA+TGG - chr1.4:74372961-74372980 MS.gene34006:CDS 45.0%
! GCATCATGAAGCTCTAACAG+AGG - chr1.4:74373554-74373573 MS.gene34006:intron 45.0%
! GCCTCTTAGGCTCATTGATT+TGG + chr1.4:74373374-74373393 None:intergenic 45.0%
! TTGACAAGCGTGTCATTGAG+AGG - chr1.4:74372692-74372711 MS.gene34006:CDS 45.0%
!! GAGACTGGTGTCATAAAACC+TGG - chr1.4:74373474-74373493 MS.gene34006:intron 45.0%
!!! ACTACTGGTGGTTTTGAAGC+CGG - chr1.4:74372946-74372965 MS.gene34006:CDS 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG - chr1.4:74373279-74373298 MS.gene34006:CDS 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG - chr1.4:74373278-74373297 MS.gene34006:CDS 45.0%
ACAGTCAGCTTGGGATGTTC+CGG + chr1.4:74372905-74372924 None:intergenic 50.0%
AGCCATTTCCAATCTGGCCA+GGG + chr1.4:74373722-74373741 None:intergenic 50.0%
AGCGCTCTACAAACCTTGAC+TGG - chr1.4:74373316-74373335 MS.gene34006:CDS 50.0%
AGGAATTGGAACTGTGCCTG+TGG - chr1.4:74373443-74373462 MS.gene34006:CDS 50.0%
AGGTGTGGCAGTCAAGAACA+GGG + chr1.4:74373749-74373768 None:intergenic 50.0%
ATCCCACATTGTCACCAGGA+AGG + chr1.4:74373581-74373600 None:intergenic 50.0%
ATGAATCACCCTGGCCAGAT+TGG - chr1.4:74373711-74373730 MS.gene34006:CDS 50.0%
ATGCGTCAAACTGTGGCTGT+TGG - chr1.4:74373957-74373976 MS.gene34006:CDS 50.0%
CATCAAGGCTGTGGAGAAGA+AGG - chr1.4:74373983-74374002 MS.gene34006:CDS 50.0%
CATCCTGAAGTGGTAGTCGA+AGG + chr1.4:74373410-74373429 None:intergenic 50.0%
CTCAAGGCTGAACGTGAAAG+AGG - chr1.4:74372778-74372797 MS.gene34006:CDS 50.0%
GAATTGGAACTGTGCCTGTG+GGG - chr1.4:74373445-74373464 MS.gene34006:CDS 50.0%
GCTCTCCTTGCTTTCACTCT+TGG - chr1.4:74373000-74373019 MS.gene34006:CDS 50.0%
GCTGTTAAGGATCTCAAGCG+TGG - chr1.4:74373618-74373637 MS.gene34006:CDS 50.0%
GGAATTGGAACTGTGCCTGT+GGG - chr1.4:74373444-74373463 MS.gene34006:CDS 50.0%
GGCTTCAAAACCACCAGTAG+TGG + chr1.4:74372947-74372966 None:intergenic 50.0%
GGGCATAGCCATTTCCAATC+TGG + chr1.4:74373728-74373747 None:intergenic 50.0%
GTAGATCAAGTGACCAGTGG+TGG + chr1.4:74372659-74372678 None:intergenic 50.0%
GTCACCTTAAGTCCTCCACT+GGG + chr1.4:74374011-74374030 None:intergenic 50.0%
GTTCAGCCTTGAGCTTGTCA+AGG + chr1.4:74372771-74372790 None:intergenic 50.0%
TAGCCATTTCCAATCTGGCC+AGG + chr1.4:74373723-74373742 None:intergenic 50.0%
TCCCACATTGTCACCAGGAA+GGG + chr1.4:74373580-74373599 None:intergenic 50.0%
TCCTGAAGTGGTAGTCGAAG+GGG + chr1.4:74373408-74373427 None:intergenic 50.0%
TCTGGGAAATCAACCACCAC+TGG - chr1.4:74372643-74372662 MS.gene34006:CDS 50.0%
TGACAGCAATGTGAGAGGTG+TGG + chr1.4:74373764-74373783 None:intergenic 50.0%
TGGGTCATCCTTGGAGTTTG+AGG + chr1.4:74373652-74373671 None:intergenic 50.0%
TTGGACCCTTGTACCAGTCA+AGG + chr1.4:74373332-74373351 None:intergenic 50.0%
TTGGTCAAGGGCCTCAAGAA+GGG + chr1.4:74373355-74373374 None:intergenic 50.0%
TTTGGTCAAGGGCCTCAAGA+AGG + chr1.4:74373356-74373375 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG + chr1.4:74372992-74373011 None:intergenic 50.0%
!! TCATCGGCCATGTTGACTCT+GGG - chr1.4:74372626-74372645 MS.gene34006:CDS 50.0%
!!! GTTGTCACTTTTGCCCCTAC+TGG - chr1.4:74373501-74373520 MS.gene34006:intron 50.0%
AGTAAAGCTCGCAGCCTCCT+TGG + chr1.4:74373676-74373695 None:intergenic 55.0%
AGTCGAAGGGGCTTGTCTGA+AGG + chr1.4:74373396-74373415 None:intergenic 55.0%
AGTCTCAACCACCATGGGCT+TGG + chr1.4:74373895-74373914 None:intergenic 55.0%
CAAGGGTCCAACCCTTCTTG+AGG - chr1.4:74373341-74373360 MS.gene34006:CDS 55.0%
CACCCTGGCCAGATTGGAAA+TGG - chr1.4:74373717-74373736 MS.gene34006:CDS 55.0%
CATTGATGCCCCTGGACACA+GGG - chr1.4:74372858-74372877 MS.gene34006:CDS 55.0%
CTAACAGCAAAACGGCCGAG+TGG + chr1.4:74373933-74373952 None:intergenic 55.0%
CTGGGTCCTTGACAAGCTCA+AGG - chr1.4:74372762-74372781 MS.gene34006:CDS 55.0%
CTTGAGCTTGTCAAGGACCC+AGG + chr1.4:74372764-74372783 None:intergenic 55.0%
GAGAACGGCACAGTCAGCTT+GGG + chr1.4:74372914-74372933 None:intergenic 55.0%
GAGAAGAAGGATCCCAGTGG+AGG - chr1.4:74373996-74374015 MS.gene34006:CDS 55.0%
GAGGTGTGGCAGTCAAGAAC+AGG + chr1.4:74373750-74373769 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG - chr1.4:74373881-74373900 MS.gene34006:CDS 55.0%
GCCCTTCCTGGTGACAATGT+GGG - chr1.4:74373576-74373595 MS.gene34006:intron 55.0%
GGATCCCAGTGGAGGACTTA+AGG - chr1.4:74374004-74374023 MS.gene34006:CDS 55.0%
GGCTTGTCTGAAGGCCTCTT+AGG + chr1.4:74373387-74373406 None:intergenic 55.0%
GGTCACCTTAAGTCCTCCAC+TGG + chr1.4:74374012-74374031 None:intergenic 55.0%
GGTGTGGCAGTCAAGAACAG+GGG + chr1.4:74373748-74373767 None:intergenic 55.0%
GTGGAGAAGAAGGATCCCAG+TGG - chr1.4:74373993-74374012 MS.gene34006:CDS 55.0%
TCAAGGGCCTCAAGAAGGGT+TGG + chr1.4:74373351-74373370 None:intergenic 55.0%
TCATTGATGCCCCTGGACAC+AGG - chr1.4:74372857-74372876 MS.gene34006:CDS 55.0%
TGAGAACGGCACAGTCAGCT+TGG + chr1.4:74372915-74372934 None:intergenic 55.0%
TGCACTGTCATTGATGCCCC+TGG - chr1.4:74372850-74372869 MS.gene34006:CDS 55.0%
TGTGGCTGTTGGCGTCATCA+AGG - chr1.4:74373968-74373987 MS.gene34006:CDS 55.0%
TGTTGGCGTCATCAAGGCTG+TGG - chr1.4:74373974-74373993 MS.gene34006:CDS 55.0%
! TCAACCACCATGGGCTTGGT+GGG + chr1.4:74373891-74373910 None:intergenic 55.0%
!! GTCATCGGCCATGTTGACTC+TGG - chr1.4:74372625-74372644 MS.gene34006:CDS 55.0%
ACAGCAAAACGGCCGAGTGG+AGG + chr1.4:74373930-74373949 None:intergenic 60.0%
CAAGGATGACCCAGCCAAGG+AGG - chr1.4:74373659-74373678 MS.gene34006:CDS 60.0%
CTCAACCACCATGGGCTTGG+TGG + chr1.4:74373892-74373911 None:intergenic 60.0%
CTCCAAGGATGACCCAGCCA+AGG - chr1.4:74373656-74373675 MS.gene34006:CDS 60.0%
CTCCTTGGCTGGGTCATCCT+TGG + chr1.4:74373661-74373680 None:intergenic 60.0%
GATTCCCACCAAGCCCATGG+TGG - chr1.4:74373884-74373903 MS.gene34006:CDS 60.0%
GCCCCTTCGACTACCACTTC+AGG - chr1.4:74373404-74373423 MS.gene34006:CDS 60.0%
GCTCTAACAGAGGCCCTTCC+TGG - chr1.4:74373564-74373583 MS.gene34006:intron 60.0%
GGCCCTTCCTGGTGACAATG+TGG - chr1.4:74373575-74373594 MS.gene34006:intron 60.0%
AAGCTCGCAGCCTCCTTGGC+TGG + chr1.4:74373672-74373691 None:intergenic 65.0%
AGCTCGCAGCCTCCTTGGCT+GGG + chr1.4:74373671-74373690 None:intergenic 65.0%
CCAGTCTCGACACGCCCCAC+AGG + chr1.4:74373462-74373481 None:intergenic 70.0%
CCTGTGGGGCGTGTCGAGAC+TGG - chr1.4:74373459-74373478 MS.gene34006:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 74372592 74374055 74372592 ID=MS.gene34006
chr1.4 mRNA 74372592 74374055 74372592 ID=MS.gene34006.t1;Parent=MS.gene34006
chr1.4 exon 74373594 74374055 74373594 ID=MS.gene34006.t1.exon1;Parent=MS.gene34006.t1
chr1.4 CDS 74373594 74374055 74373594 ID=cds.MS.gene34006.t1;Parent=MS.gene34006.t1
chr1.4 exon 74372592 74373476 74372592 ID=MS.gene34006.t1.exon2;Parent=MS.gene34006.t1
chr1.4 CDS 74372592 74373476 74372592 ID=cds.MS.gene34006.t1;Parent=MS.gene34006.t1
Gene Sequence

>MS.gene34006

ATGGGTAAGGAAAAGGTTCATATCAACATTGTGGTCATCGGCCATGTTGACTCTGGGAAATCAACCACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTCATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCCTGGGTCCTTGACAAGCTCAAGGCTGAACGTGAAAGAGGTATCACCATTGACATTGCTCTCTGGAAGTTTGAGACAACCAAGTACTACTGCACTGTCATTGATGCCCCTGGACACAGGGATTTCATTAAGAACATGATCACCGGAACATCCCAAGCTGACTGTGCCGTTCTCATCATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATTTCTAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATCTGCTGTTGCAACAAGGTATTTAATATTTTCAGCCCCTTGAAGTTGTATATTTGATTATTTTTATAATTCATTTATTTAAGTACTAATTTGAATTCATTTAATGAAGTACTAATTGCCATCTATCTTGAACAGATGGATGCTACTACACCCAAGTACTCCAAGGGTAGATATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTATAACCCAGACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAACCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACCAAATCAATGAGCCTAAGAGGCCTTCAGACAAGCCCCTTCGACTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTGGGGCGTGTCGAGACTGGTGTCATAAAACCTGGAATGGTTGTCACTTTTGCCCCTACTGGACTGACAACTGAAGTCAAGTCTGTGGAGATGCATCATGAAGCTCTAACAGAGGCCCTTCCTGGTGACAATGTGGGATTTAATGTCAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTGCCTCAAACTCCAAGGATGACCCAGCCAAGGAGGCTGCGAGCTTTACTTCTCAAGTGATCATAATGAATCACCCTGGCCAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCACACCTCTCACATTGCTGTCAAGTTTGCTGAGCTTGTTACTAAGATTGATAGGCGTTCTGGTAAGGAGATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCAAGCCCATGGTGGTTGAGACTTTCTCTGAATATCCTCCACTCGGCCGTTTTGCTGTTAGAGACATGCGTCAAACTGTGGCTGTTGGCGTCATCAAGGCTGTGGAGAAGAAGGATCCCAGTGGAGGACTTAAGGTGACCAAGTCAGCATTGAAGAAGAAGTGA

Protein sequence

>MS.gene34006.t1

MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGGLKVTKSALKKK