AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058469


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058469.t1 MTR_1g495705 99.554 448 2 0 1 448 1 448 0.0 918
MS.gene058469.t1 MTR_1g095650 99.554 448 2 0 1 448 1 448 0.0 918
MS.gene058469.t1 MTR_1g095703 99.330 448 3 0 1 448 1 448 0.0 917
MS.gene058469.t1 MTR_6g021800 96.429 448 15 1 1 448 1 447 0.0 893
MS.gene058469.t1 MTR_6g021805 96.429 448 15 1 1 448 1 447 0.0 893
MS.gene058469.t1 MTR_4g014810 96.205 448 16 1 1 448 1 447 0.0 888
MS.gene058469.t1 MTR_1g013680 96.231 451 14 1 1 448 1 451 0.0 886
MS.gene058469.t1 MTR_1g085410 82.719 434 75 0 1 434 1 434 0.0 744
MS.gene058469.t1 MTR_1g101870 82.151 437 73 3 1 437 1 432 0.0 736
MS.gene058469.t1 MTR_1g101870 82.151 437 73 3 1 437 1 432 0.0 734
MS.gene058469.t1 MTR_1g024175 79.263 434 90 0 1 434 1 434 0.0 728
MS.gene058469.t1 MTR_8g014590 79.955 449 88 1 1 447 1 449 0.0 724
MS.gene058469.t1 MTR_1g095650 99.424 347 2 0 102 448 1 347 0.0 709
MS.gene058469.t1 MTR_2g082730 72.644 435 102 2 1 433 1 420 0.0 645
MS.gene058469.t1 MTR_5g037350 67.872 470 114 1 3 435 13 482 0.0 635
MS.gene058469.t1 MTR_1g089520 71.395 430 105 3 4 432 5 417 0.0 628
MS.gene058469.t1 MTR_2g082665 67.586 435 98 2 1 433 1 394 0.0 587
MS.gene058469.t1 MTR_2g037420 65.820 433 105 3 1 431 1 392 0.0 562
MS.gene058469.t1 MTR_8g013910 63.920 449 127 5 1 433 1 430 0.0 551
MS.gene058469.t1 MTR_2g080210 64.828 435 117 4 1 432 1 402 0.0 551
MS.gene058469.t1 MTR_8g008740 78.462 325 69 1 1 324 1 325 0.0 539
MS.gene058469.t1 MTR_1g112460 66.107 298 60 4 155 447 1 262 1.11e-126 368
MS.gene058469.t1 MTR_1g495735 76.617 201 37 1 240 430 106 306 1.63e-101 305
MS.gene058469.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 5.30e-17 82.0
MS.gene058469.t1 MTR_6g080420 37.963 432 254 6 5 428 89 514 5.19e-97 301
MS.gene058469.t1 MTR_8g106700 37.963 432 258 6 4 429 43 470 8.11e-94 291
MS.gene058469.t1 MTR_8g106700 37.963 432 258 6 4 429 49 476 9.12e-94 291
MS.gene058469.t1 MTR_8g106700 37.963 432 258 6 4 429 70 497 2.46e-93 291
MS.gene058469.t1 MTR_8g087950 36.028 433 268 6 7 433 275 704 1.06e-91 292
MS.gene058469.t1 MTR_8g087950 36.028 433 268 6 7 433 348 777 5.28e-91 292
MS.gene058469.t1 MTR_1g101880 87.013 154 20 0 1 154 1 154 8.65e-90 274
MS.gene058469.t1 MTR_4g054970 57.025 242 75 4 193 431 50 265 3.11e-81 252
MS.gene058469.t1 MTR_4g054970 75.000 44 11 0 1 44 1 44 7.74e-13 68.9
MS.gene058469.t1 MTR_1g024165 81.429 140 26 0 6 145 10 149 1.42e-78 241
MS.gene058469.t1 MTR_8g014950 76.471 102 24 0 3 104 4 105 1.74e-47 159
MS.gene058469.t1 MTR_7g094460 30.365 438 245 14 3 429 59 447 1.36e-45 164
MS.gene058469.t1 MTR_7g098190 53.892 167 51 5 56 220 10 152 8.88e-43 149
MS.gene058469.t1 MTR_2g021300 29.613 439 247 12 3 429 46 434 4.95e-42 154
MS.gene058469.t1 MTR_3g076660 29.955 444 250 15 3 429 88 487 7.17e-41 152
MS.gene058469.t1 MTR_8g014960 64.634 82 29 0 213 294 2 83 2.31e-28 110
MS.gene058469.t1 MTR_3g097250 26.471 272 143 9 9 272 85 307 1.53e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058469.t1 AT5G60390 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene058469.t1 AT5G60390 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene058469.t1 AT5G60390 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene058469.t1 AT1G07920 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene058469.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene058469.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene058469.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene058469.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene058469.t1 AT1G07930 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene058469.t1 AT1G07930 98.824 255 3 0 1 255 1 255 0.0 530
MS.gene058469.t1 AT1G07930 86.325 117 15 1 331 447 254 369 4.46e-64 211
MS.gene058469.t1 AT1G18070 37.647 425 257 5 5 424 99 520 3.35e-94 294
MS.gene058469.t1 AT1G18070 37.647 425 257 5 5 424 99 520 3.35e-94 294
MS.gene058469.t1 AT1G18070 36.927 436 256 6 5 424 99 531 3.41e-91 286
MS.gene058469.t1 AT5G10630 35.765 425 265 5 7 426 239 660 1.02e-90 289
MS.gene058469.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.05e-90 289
MS.gene058469.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.05e-90 289
MS.gene058469.t1 AT5G10630 35.765 425 265 5 7 426 310 731 5.91e-90 289
MS.gene058469.t1 AT5G10630 35.765 425 265 5 7 426 315 736 6.36e-90 289
MS.gene058469.t1 AT1G35550 78.641 103 22 0 335 437 1 103 1.45e-53 174
MS.gene058469.t1 AT4G02930 30.296 439 245 15 3 429 63 452 7.48e-44 160
MS.gene058469.t1 AT4G20360 30.137 438 257 10 3 429 75 474 9.49e-44 160
MS.gene058469.t1 AT4G20360 30.137 438 257 10 3 429 75 474 9.49e-44 160
MS.gene058469.t1 AT2G31060 25.000 264 160 8 9 263 61 295 3.08e-12 69.3
MS.gene058469.t1 AT5G08650 26.667 270 145 10 9 272 88 310 2.86e-11 65.9
MS.gene058469.t1 AT5G08650 26.667 270 145 10 9 272 88 310 2.92e-11 66.2
MS.gene058469.t1 AT2G31060 24.615 260 162 7 9 263 61 291 3.76e-11 65.9

Find 135 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCATTCTTCAAGAATT+TGG 0.066665 1.4:-7514999 None:intergenic
GTCTACAAGATTGGAGGAAT+TGG 0.281818 1.4:+7514584 MS.gene058469:CDS
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 1.4:+7514176 MS.gene058469:CDS
TTCATTAAGAACATGATTAC+TGG 0.308905 1.4:+7514059 MS.gene058469:CDS
TGTTAAGAACGTTGCTGTTA+AGG 0.312399 1.4:+7514760 MS.gene058469:CDS
GCCTCTTAGGCTCGTTGATT+TGG 0.315296 1.4:-7514526 None:intergenic
ACCAGTGGTGGTTGACTTCC+CGG 0.329357 1.4:-7513820 None:intergenic
CACATTAACATTGTTGTCAT+TGG 0.329838 1.4:+7513786 MS.gene058469:CDS
TCACCATTCTTCAAGAATTT+GGG 0.331757 1.4:-7514998 None:intergenic
ATAGCCAACCTTCTTCAAAT+AGG 0.332380 1.4:-7514390 None:intergenic
ACTAAGATTGACAGGCGTTC+TGG 0.356033 1.4:+7514956 MS.gene058469:CDS
GAGGTGTGGCAGTCAAGAAC+AGG 0.357372 1.4:-7514902 None:intergenic
GCTCTCACTGAGGCTCTTCC+CGG 0.361996 1.4:+7514719 MS.gene058469:CDS
ATTCCATTTGTTCCCATCTC+TGG 0.368209 1.4:+7514425 MS.gene058469:CDS
AAGTTAGCGGCCTCCTTGGC+AGG 0.394061 1.4:-7514824 None:intergenic
CTGATCATTGATTCCACTAC+TGG 0.405045 1.4:+7514107 MS.gene058469:CDS
CTCCTTGGCAGGGTCATCCT+TGG 0.412873 1.4:-7514813 None:intergenic
ATGAATCACCCTGGCCAGAT+TGG 0.417716 1.4:+7514866 MS.gene058469:CDS
GCAAAAGTGACAACCATTCC+AGG 0.418006 1.4:-7514647 None:intergenic
CCTGTGGGGCGTGTCGAGAC+TGG 0.431830 1.4:+7514614 MS.gene058469:CDS
GGCTTGTCTGATGGCCTCTT+AGG 0.432559 1.4:-7514539 None:intergenic
CACCCTGGCCAGATTGGAAA+TGG 0.432985 1.4:+7514872 MS.gene058469:CDS
GCCCCTCCGACTACCACTTC+AGG 0.433104 1.4:+7514559 MS.gene058469:CDS
AGGACAAATGGGTAAGGAAA+AGG 0.440646 1.4:+7513761 None:intergenic
GGGCATAGCCATTTCCAATC+TGG 0.448022 1.4:-7514880 None:intergenic
AAACCAGAGATGGGAACAAA+TGG 0.449170 1.4:-7514428 None:intergenic
CTGACCATCCTTTGAAATAC+CGG 0.450328 1.4:-7514141 None:intergenic
GTCATTGGCCATGTCGACTC+CGG 0.454084 1.4:+7513801 MS.gene058469:CDS
ACTTCAGTTGTCAGTCCAGT+AGG 0.456008 1.4:-7514671 None:intergenic
CTTCAGGATGTCTACAAGAT+TGG 0.458119 1.4:+7514575 MS.gene058469:CDS
AGCGTTCATTCAAGTATGCT+TGG 0.461530 1.4:+7513919 MS.gene058469:CDS
AGTCTCAACCACCATGGGCT+TGG 0.462350 1.4:-7515047 None:intergenic
AGGAATTGGGACTGTGCCTG+TGG 0.463901 1.4:+7514598 MS.gene058469:CDS
TCTACAAGATTGGAGGAATT+GGG 0.467601 1.4:+7514585 MS.gene058469:CDS
ACCAAATCAACGAGCCTAAG+AGG 0.467614 1.4:+7514525 MS.gene058469:CDS
CTCAACCACCATGGGCTTGG+TGG 0.468734 1.4:-7515044 None:intergenic
TAGCCATTTCCAATCTGGCC+AGG 0.474048 1.4:-7514875 None:intergenic
TGCACTGTCATTGATGCCCC+TGG 0.477178 1.4:+7514026 MS.gene058469:CDS
TTAATGAAATCCCTGTGTCC+AGG 0.479234 1.4:-7514044 None:intergenic
TACCTACCCTTCGAGTACTT+TGG 0.480160 1.4:-7514341 None:intergenic
GCGTTCATTCAAGTATGCTT+GGG 0.487854 1.4:+7513920 MS.gene058469:CDS
TCATCCTATTTGAAGAAGGT+TGG 0.491235 1.4:+7514386 MS.gene058469:CDS
AGCAAATTTGACAGCAATGT+GGG 0.494938 1.4:-7514924 None:intergenic
AGTAAAGTTAGCGGCCTCCT+TGG 0.495389 1.4:-7514828 None:intergenic
AGTCGGAGGGGCTTGTCTGA+TGG 0.496444 1.4:-7514548 None:intergenic
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 1.4:-7514438 None:intergenic
GGAATTGGGACTGTGCCTGT+GGG 0.501531 1.4:+7514599 MS.gene058469:CDS
AGTTTCATCCTATTTGAAGA+AGG 0.501588 1.4:+7514382 MS.gene058469:CDS
ATCATTGATTCCACTACTGG+TGG 0.502099 1.4:+7514110 MS.gene058469:CDS
TACAAATCTTGACTGGTACA+AGG 0.502738 1.4:+7514478 MS.gene058469:CDS
AGCTTGTTACTAAGATTGAC+AGG 0.504274 1.4:+7514948 MS.gene058469:CDS
CTTCAGTTGTCAGTCCAGTA+GGG 0.506099 1.4:-7514670 None:intergenic
ATTAAATCCCACATTGTCAC+CGG 0.519224 1.4:-7514738 None:intergenic
TCCGGGAAGTCAACCACCAC+TGG 0.520912 1.4:+7513819 MS.gene058469:CDS
AGGGTCATCCTTGGAGTTTG+AGG 0.522734 1.4:-7514804 None:intergenic
CAGGATGTCTACAAGATTGG+AGG 0.523217 1.4:+7514578 MS.gene058469:CDS
TCATTGGCCATGTCGACTCC+GGG 0.523741 1.4:+7513802 MS.gene058469:CDS
TAATGAAATCCCTGTGTCCA+GGG 0.528272 1.4:-7514043 None:intergenic
GAGCCCAAATTCTTGAAGAA+TGG 0.528480 1.4:+7514995 MS.gene058469:CDS
TTCTCTGAGTATCCTCCACT+TGG 0.530256 1.4:+7515070 MS.gene058469:CDS
TATCAAGGCTGTGGAGAAGA+AGG 0.530959 1.4:+7515138 MS.gene058469:CDS
CTCAAAGCTGAACGTGAAAG+AGG 0.531334 1.4:+7513954 MS.gene058469:CDS
CATTGATGCCCCTGGACACA+GGG 0.535845 1.4:+7514034 MS.gene058469:CDS
TCATTGATGCCCCTGGACAC+AGG 0.539611 1.4:+7514033 MS.gene058469:CDS
TGTGGCTGTTGGTGTTATCA+AGG 0.541484 1.4:+7515123 MS.gene058469:CDS
CTTCGAGTACTTTGGTGTAG+TGG 0.545264 1.4:-7514333 None:intergenic
CACTTGATCTACAAGCTTGG+AGG 0.545798 1.4:+7513843 MS.gene058469:CDS
GAGAAAGTCTCAACCACCAT+GGG 0.549740 1.4:-7515052 None:intergenic
GATTGACAGGCGTTCTGGAA+AGG 0.550491 1.4:+7514961 MS.gene058469:CDS
GGCTTCAAAACCACCAGTAG+TGG 0.551737 1.4:-7514120 None:intergenic
GGCTCTTCCCGGTGACAATG+TGG 0.552654 1.4:+7514730 MS.gene058469:CDS
GGTCACTTGATCTACAAGCT+TGG 0.555547 1.4:+7513840 MS.gene058469:CDS
CCAGTCTCGACACGCCCCAC+AGG 0.557031 1.4:-7514614 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.557624 1.4:-7515043 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 1.4:-7514166 None:intergenic
AGGTGTGGCAGTCAAGAACA+GGG 0.559985 1.4:-7514901 None:intergenic
CACTTGAGAAGTAAAGTTAG+CGG 0.560708 1.4:-7514837 None:intergenic
TTCTTGAAGAATGGTGATGC+TGG 0.561159 1.4:+7515004 MS.gene058469:CDS
TTGACAAGCGTGTGATTGAG+AGG 0.564366 1.4:+7513868 MS.gene058469:CDS
ACAAATCTTGACTGGTACAA+GGG 0.566035 1.4:+7514479 MS.gene058469:CDS
TTTGGTCAAGAGCCTCAAGA+AGG 0.570297 1.4:-7514508 None:intergenic
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 1.4:-7514165 None:intergenic
GAAGCCGGTATTTCAAAGGA+TGG 0.572749 1.4:+7514137 MS.gene058469:CDS
TTGACTTCCCGGAGTCGACA+TGG 0.574810 1.4:-7513809 None:intergenic
ATCCTGAAGTGGTAGTCGGA+GGG 0.576252 1.4:-7514561 None:intergenic
GAGACTGGTGTCATAAAACC+TGG 0.585699 1.4:+7514629 MS.gene058469:CDS
CAAGGGTCCTACCCTTCTTG+AGG 0.587059 1.4:+7514496 MS.gene058469:CDS
GCTCTTCCCGGTGACAATGT+GGG 0.588610 1.4:+7514731 MS.gene058469:CDS
GCATATCCCTGACAGCAAAA+CGG 0.593078 1.4:-7515093 None:intergenic
TGTTGGTGTTATCAAGGCTG+TGG 0.597147 1.4:+7515129 MS.gene058469:CDS
TAGGTATGATGAAATTGTGA+AGG 0.599770 1.4:+7514358 MS.gene058469:CDS
CACTACACCAAAGTACTCGA+AGG 0.602464 1.4:+7514334 MS.gene058469:CDS
ATGCGTCAAACTGTGGCTGT+TGG 0.604242 1.4:+7515112 MS.gene058469:CDS
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 1.4:-7514437 None:intergenic
TCCTGAAGTGGTAGTCGGAG+GGG 0.608492 1.4:-7514560 None:intergenic
AGCGCTCTACAAATCTTGAC+TGG 0.610562 1.4:+7514471 MS.gene058469:CDS
GATGATTCCCACCAAGCCCA+TGG 0.611182 1.4:+7515036 MS.gene058469:CDS
GAATTGGGACTGTGCCTGTG+GGG 0.615616 1.4:+7514600 MS.gene058469:CDS
GACAACTGAAGTCAAGTCTG+TGG 0.617234 1.4:+7514682 MS.gene058469:CDS
CTCCAAGGATGACCCTGCCA+AGG 0.619064 1.4:+7514811 MS.gene058469:CDS
TCAAGAGCCTCAAGAAGGGT+AGG 0.620041 1.4:-7514503 None:intergenic
TCACACCAAGAGTGAAAGCA+AGG 0.621193 1.4:-7514181 None:intergenic
ATCTTGTAGACATCCTGAAG+TGG 0.621388 1.4:-7514572 None:intergenic
TTCAGTTGTCAGTCCAGTAG+GGG 0.622733 1.4:-7514669 None:intergenic
AGCCATTTCCAATCTGGCCA+GGG 0.623271 1.4:-7514874 None:intergenic
ACAGCAAAACGGCCAAGTGG+AGG 0.624787 1.4:-7515082 None:intergenic
TGGTGTCATAAAACCTGGAA+TGG 0.625384 1.4:+7514634 MS.gene058469:CDS
AGAGAAAGTCTCAACCACCA+TGG 0.628507 1.4:-7515053 None:intergenic
AATGATTTGTTGCTGCAACA+AGG 0.628678 1.4:+7514208 MS.gene058469:CDS
TTCTGGAAAGGAGATTGAGA+AGG 0.629354 1.4:+7514973 MS.gene058469:CDS
TTATGTTGCCTCAAACTCCA+AGG 0.633897 1.4:+7514796 MS.gene058469:CDS
AGTTAGCGGCCTCCTTGGCA+GGG 0.634693 1.4:-7514823 None:intergenic
CAAGGATGACCCTGCCAAGG+AGG 0.636072 1.4:+7514814 MS.gene058469:CDS
CATCCTGAAGTGGTAGTCGG+AGG 0.637451 1.4:-7514562 None:intergenic
AGACATCCTGAAGTGGTAGT+CGG 0.638051 1.4:-7514565 None:intergenic
CAGCAAATTTGACAGCAATG+TGG 0.639349 1.4:-7514925 None:intergenic
TTGGTCAAGAGCCTCAAGAA+GGG 0.643393 1.4:-7514507 None:intergenic
TGACAGCAATGTGGGAGGTG+TGG 0.647495 1.4:-7514916 None:intergenic
CACCAAAGTACTCGAAGGGT+AGG 0.649681 1.4:+7514339 MS.gene058469:CDS
AATGAAATCCCTGTGTCCAG+GGG 0.656838 1.4:-7514042 None:intergenic
GCTGTTAAGGATCTCAAGCG+TGG 0.663761 1.4:+7514773 MS.gene058469:CDS
TTAAATCCCACATTGTCACC+GGG 0.665158 1.4:-7514737 None:intergenic
ACTACACCAAAGTACTCGAA+GGG 0.668068 1.4:+7514335 MS.gene058469:CDS
CAGGGATATGCGTCAAACTG+TGG 0.672188 1.4:+7515105 MS.gene058469:CDS
GAGAAGAAGGATCCCAGCGG+AGG 0.673598 1.4:+7515151 MS.gene058469:CDS
AAATTTGACAGCAATGTGGG+AGG 0.676474 1.4:-7514921 None:intergenic
CTGACAGCAAAACGGCCAAG+TGG 0.682401 1.4:-7515085 None:intergenic
CTTGTAGATCAAGTGACCAG+TGG 0.682705 1.4:-7513835 None:intergenic
GTGATCATCATGAATCACCC+TGG 0.684375 1.4:+7514857 MS.gene058469:CDS
GTAGATCAAGTGACCAGTGG+TGG 0.699002 1.4:-7513832 None:intergenic
TCACAATTGACATTGCTCTG+TGG 0.708352 1.4:+7513979 MS.gene058469:CDS
GGTGTGGCAGTCAAGAACAG+GGG 0.711459 1.4:-7514900 None:intergenic
GATTCCCACCAAGCCCATGG+TGG 0.723849 1.4:+7515039 MS.gene058469:CDS
GCATCATGAAGCTCTCACTG+AGG 0.742195 1.4:+7514709 MS.gene058469:CDS
GTGGAGAAGAAGGATCCCAG+CGG 0.769725 1.4:+7515148 MS.gene058469:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATTACAATAATAATCAG+AGG - chr1.4:7514263-7514282 None:intergenic 20.0%
! TTCATTAAGAACATGATTAC+TGG + chr1.4:7514059-7514078 MS.gene058469:CDS 25.0%
AGTTTCATCCTATTTGAAGA+AGG + chr1.4:7514382-7514401 MS.gene058469:CDS 30.0%
ATCACCATTCTTCAAGAATT+TGG - chr1.4:7515002-7515021 None:intergenic 30.0%
CACATTAACATTGTTGTCAT+TGG + chr1.4:7513786-7513805 MS.gene058469:CDS 30.0%
TAGGTATGATGAAATTGTGA+AGG + chr1.4:7514358-7514377 MS.gene058469:CDS 30.0%
TCACCATTCTTCAAGAATTT+GGG - chr1.4:7515001-7515020 None:intergenic 30.0%
! GAACAAATGGAATTTTGTCT+GGG - chr1.4:7514418-7514437 None:intergenic 30.0%
!! TTTTTGCTATCTTGAACAGA+TGG + chr1.4:7514307-7514326 MS.gene058469:intron 30.0%
ACAAATCTTGACTGGTACAA+GGG + chr1.4:7514479-7514498 MS.gene058469:CDS 35.0%
AGCAAATTTGACAGCAATGT+GGG - chr1.4:7514927-7514946 None:intergenic 35.0%
ATAGCCAACCTTCTTCAAAT+AGG - chr1.4:7514393-7514412 None:intergenic 35.0%
ATTAAATCCCACATTGTCAC+CGG - chr1.4:7514741-7514760 None:intergenic 35.0%
CACTTGAGAAGTAAAGTTAG+CGG - chr1.4:7514840-7514859 None:intergenic 35.0%
TACAAATCTTGACTGGTACA+AGG + chr1.4:7514478-7514497 MS.gene058469:CDS 35.0%
TCATCCTATTTGAAGAAGGT+TGG + chr1.4:7514386-7514405 MS.gene058469:CDS 35.0%
TCTACAAGATTGGAGGAATT+GGG + chr1.4:7514585-7514604 MS.gene058469:CDS 35.0%
! GGAACAAATGGAATTTTGTC+TGG - chr1.4:7514419-7514438 None:intergenic 35.0%
! TGTTAAGAACGTTGCTGTTA+AGG + chr1.4:7514760-7514779 MS.gene058469:CDS 35.0%
!! AATGATTTGTTGCTGCAACA+AGG + chr1.4:7514208-7514227 MS.gene058469:CDS 35.0%
!! AGCTTGTTACTAAGATTGAC+AGG + chr1.4:7514948-7514967 MS.gene058469:CDS 35.0%
!!! TTTTGAAGCCGGTATTTCAA+AGG + chr1.4:7514133-7514152 MS.gene058469:CDS 35.0%
AAACCAGAGATGGGAACAAA+TGG - chr1.4:7514431-7514450 None:intergenic 40.0%
AAATTTGACAGCAATGTGGG+AGG - chr1.4:7514924-7514943 None:intergenic 40.0%
AGCGTTCATTCAAGTATGCT+TGG + chr1.4:7513919-7513938 MS.gene058469:CDS 40.0%
ATCTTGTAGACATCCTGAAG+TGG - chr1.4:7514575-7514594 None:intergenic 40.0%
ATTCCATTTGTTCCCATCTC+TGG + chr1.4:7514425-7514444 MS.gene058469:CDS 40.0%
CAGCAAATTTGACAGCAATG+TGG - chr1.4:7514928-7514947 None:intergenic 40.0%
CTTCAGGATGTCTACAAGAT+TGG + chr1.4:7514575-7514594 MS.gene058469:CDS 40.0%
GAGCCCAAATTCTTGAAGAA+TGG + chr1.4:7514995-7515014 MS.gene058469:CDS 40.0%
GCGTTCATTCAAGTATGCTT+GGG + chr1.4:7513920-7513939 MS.gene058469:CDS 40.0%
GTCTACAAGATTGGAGGAAT+TGG + chr1.4:7514584-7514603 MS.gene058469:CDS 40.0%
TAATGAAATCCCTGTGTCCA+GGG - chr1.4:7514046-7514065 None:intergenic 40.0%
TCACAATTGACATTGCTCTG+TGG + chr1.4:7513979-7513998 MS.gene058469:CDS 40.0%
TTAAATCCCACATTGTCACC+GGG - chr1.4:7514740-7514759 None:intergenic 40.0%
TTAATGAAATCCCTGTGTCC+AGG - chr1.4:7514047-7514066 None:intergenic 40.0%
TTATGTTGCCTCAAACTCCA+AGG + chr1.4:7514796-7514815 MS.gene058469:CDS 40.0%
! ACTACACCAAAGTACTCGAA+GGG + chr1.4:7514335-7514354 MS.gene058469:CDS 40.0%
! TTCTGGAAAGGAGATTGAGA+AGG + chr1.4:7514973-7514992 MS.gene058469:CDS 40.0%
! TTCTTGAAGAATGGTGATGC+TGG + chr1.4:7515004-7515023 MS.gene058469:CDS 40.0%
!! ATAATCAGAGGCACCTTCAA+AGG - chr1.4:7514251-7514270 None:intergenic 40.0%
!! ATCATTGATTCCACTACTGG+TGG + chr1.4:7514110-7514129 MS.gene058469:CDS 40.0%
!! CTGACCATCCTTTGAAATAC+CGG - chr1.4:7514144-7514163 None:intergenic 40.0%
!! CTGATCATTGATTCCACTAC+TGG + chr1.4:7514107-7514126 MS.gene058469:CDS 40.0%
!! GTTTTATTAAGTCCTCCGCT+GGG - chr1.4:7515166-7515185 None:intergenic 40.0%
!! TAATCAGAGGCACCTTCAAA+GGG - chr1.4:7514250-7514269 None:intergenic 40.0%
!! TGAACGTTTTAGCCCTTTGA+AGG + chr1.4:7514235-7514254 MS.gene058469:intron 40.0%
!! TGGTGTCATAAAACCTGGAA+TGG + chr1.4:7514634-7514653 MS.gene058469:CDS 40.0%
!! TGTTTTATTAAGTCCTCCGC+TGG - chr1.4:7515167-7515186 None:intergenic 40.0%
AATGAAATCCCTGTGTCCAG+GGG - chr1.4:7514045-7514064 None:intergenic 45.0%
ACCAAATCAACGAGCCTAAG+AGG + chr1.4:7514525-7514544 MS.gene058469:CDS 45.0%
ACTAAGATTGACAGGCGTTC+TGG + chr1.4:7514956-7514975 MS.gene058469:CDS 45.0%
ACTTCAGTTGTCAGTCCAGT+AGG - chr1.4:7514674-7514693 None:intergenic 45.0%
AGACATCCTGAAGTGGTAGT+CGG - chr1.4:7514568-7514587 None:intergenic 45.0%
AGAGAAAGTCTCAACCACCA+TGG - chr1.4:7515056-7515075 None:intergenic 45.0%
AGCGCTCTACAAATCTTGAC+TGG + chr1.4:7514471-7514490 MS.gene058469:CDS 45.0%
ATCTCCCTCAAAACCAGAGA+TGG - chr1.4:7514441-7514460 None:intergenic 45.0%
CACTTGATCTACAAGCTTGG+AGG + chr1.4:7513843-7513862 MS.gene058469:CDS 45.0%
CAGGATGTCTACAAGATTGG+AGG + chr1.4:7514578-7514597 MS.gene058469:CDS 45.0%
CTCAAAGCTGAACGTGAAAG+AGG + chr1.4:7513954-7513973 MS.gene058469:CDS 45.0%
CTTCAGTTGTCAGTCCAGTA+GGG - chr1.4:7514673-7514692 None:intergenic 45.0%
CTTGTAGATCAAGTGACCAG+TGG - chr1.4:7513838-7513857 None:intergenic 45.0%
GAAGCCGGTATTTCAAAGGA+TGG + chr1.4:7514137-7514156 MS.gene058469:CDS 45.0%
GACAACTGAAGTCAAGTCTG+TGG + chr1.4:7514682-7514701 MS.gene058469:CDS 45.0%
GAGAAAGTCTCAACCACCAT+GGG - chr1.4:7515055-7515074 None:intergenic 45.0%
GCAAAAGTGACAACCATTCC+AGG - chr1.4:7514650-7514669 None:intergenic 45.0%
GCATATCCCTGACAGCAAAA+CGG - chr1.4:7515096-7515115 None:intergenic 45.0%
GGTCACTTGATCTACAAGCT+TGG + chr1.4:7513840-7513859 MS.gene058469:CDS 45.0%
GTGATCATCATGAATCACCC+TGG + chr1.4:7514857-7514876 MS.gene058469:CDS 45.0%
TACCTACCCTTCGAGTACTT+TGG - chr1.4:7514344-7514363 None:intergenic 45.0%
TATCAAGGCTGTGGAGAAGA+AGG + chr1.4:7515138-7515157 MS.gene058469:CDS 45.0%
TCACACCAAGAGTGAAAGCA+AGG - chr1.4:7514184-7514203 None:intergenic 45.0%
TCTCCCTCAAAACCAGAGAT+GGG - chr1.4:7514440-7514459 None:intergenic 45.0%
TTCAGTTGTCAGTCCAGTAG+GGG - chr1.4:7514672-7514691 None:intergenic 45.0%
TTCTCTGAGTATCCTCCACT+TGG + chr1.4:7515070-7515089 MS.gene058469:CDS 45.0%
TTGACAAGCGTGTGATTGAG+AGG + chr1.4:7513868-7513887 MS.gene058469:CDS 45.0%
TTGGTCAAGAGCCTCAAGAA+GGG - chr1.4:7514510-7514529 None:intergenic 45.0%
TTTGGTCAAGAGCCTCAAGA+AGG - chr1.4:7514511-7514530 None:intergenic 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG - chr1.4:7514169-7514188 None:intergenic 45.0%
! CACTACACCAAAGTACTCGA+AGG + chr1.4:7514334-7514353 MS.gene058469:CDS 45.0%
! CTTCGAGTACTTTGGTGTAG+TGG - chr1.4:7514336-7514355 None:intergenic 45.0%
!! GAGACTGGTGTCATAAAACC+TGG + chr1.4:7514629-7514648 MS.gene058469:CDS 45.0%
!! TGTGGCTGTTGGTGTTATCA+AGG + chr1.4:7515123-7515142 MS.gene058469:CDS 45.0%
!! TGTTGGTGTTATCAAGGCTG+TGG + chr1.4:7515129-7515148 MS.gene058469:CDS 45.0%
!!! ACTACTGGTGGTTTTGAAGC+CGG + chr1.4:7514122-7514141 MS.gene058469:CDS 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG + chr1.4:7514434-7514453 MS.gene058469:CDS 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG + chr1.4:7514433-7514452 MS.gene058469:CDS 45.0%
AGCCATTTCCAATCTGGCCA+GGG - chr1.4:7514877-7514896 None:intergenic 50.0%
AGGGTCATCCTTGGAGTTTG+AGG - chr1.4:7514807-7514826 None:intergenic 50.0%
AGGTGTGGCAGTCAAGAACA+GGG - chr1.4:7514904-7514923 None:intergenic 50.0%
AGTAAAGTTAGCGGCCTCCT+TGG - chr1.4:7514831-7514850 None:intergenic 50.0%
ATCCTGAAGTGGTAGTCGGA+GGG - chr1.4:7514564-7514583 None:intergenic 50.0%
ATGAATCACCCTGGCCAGAT+TGG + chr1.4:7514866-7514885 MS.gene058469:CDS 50.0%
ATGCGTCAAACTGTGGCTGT+TGG + chr1.4:7515112-7515131 MS.gene058469:CDS 50.0%
CAGGGATATGCGTCAAACTG+TGG + chr1.4:7515105-7515124 MS.gene058469:CDS 50.0%
GCATCATGAAGCTCTCACTG+AGG + chr1.4:7514709-7514728 MS.gene058469:CDS 50.0%
GCTCTCCTTGCTTTCACTCT+TGG + chr1.4:7514176-7514195 MS.gene058469:CDS 50.0%
GCTGTTAAGGATCTCAAGCG+TGG + chr1.4:7514773-7514792 MS.gene058469:CDS 50.0%
GGCTTCAAAACCACCAGTAG+TGG - chr1.4:7514123-7514142 None:intergenic 50.0%
GGGCATAGCCATTTCCAATC+TGG - chr1.4:7514883-7514902 None:intergenic 50.0%
GTAGATCAAGTGACCAGTGG+TGG - chr1.4:7513835-7513854 None:intergenic 50.0%
TAGCCATTTCCAATCTGGCC+AGG - chr1.4:7514878-7514897 None:intergenic 50.0%
TCAAGAGCCTCAAGAAGGGT+AGG - chr1.4:7514506-7514525 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG - chr1.4:7514168-7514187 None:intergenic 50.0%
! CACCAAAGTACTCGAAGGGT+AGG + chr1.4:7514339-7514358 MS.gene058469:CDS 50.0%
! GCCTCTTAGGCTCGTTGATT+TGG - chr1.4:7514529-7514548 None:intergenic 50.0%
!! ACTTGGCCGTTTTGCTGTCA+GGG + chr1.4:7515087-7515106 MS.gene058469:CDS 50.0%
!! GATTGACAGGCGTTCTGGAA+AGG + chr1.4:7514961-7514980 MS.gene058469:CDS 50.0%
!!! GTTGTCACTTTTGCCCCTAC+TGG + chr1.4:7514656-7514675 MS.gene058469:CDS 50.0%
ACAGCAAAACGGCCAAGTGG+AGG - chr1.4:7515085-7515104 None:intergenic 55.0%
AGGAATTGGGACTGTGCCTG+TGG + chr1.4:7514598-7514617 MS.gene058469:CDS 55.0%
AGTCTCAACCACCATGGGCT+TGG - chr1.4:7515050-7515069 None:intergenic 55.0%
CAAGGGTCCTACCCTTCTTG+AGG + chr1.4:7514496-7514515 MS.gene058469:CDS 55.0%
CACCCTGGCCAGATTGGAAA+TGG + chr1.4:7514872-7514891 MS.gene058469:CDS 55.0%
CATCCTGAAGTGGTAGTCGG+AGG - chr1.4:7514565-7514584 None:intergenic 55.0%
CATTGATGCCCCTGGACACA+GGG + chr1.4:7514034-7514053 MS.gene058469:CDS 55.0%
CTGACAGCAAAACGGCCAAG+TGG - chr1.4:7515088-7515107 None:intergenic 55.0%
GAATTGGGACTGTGCCTGTG+GGG + chr1.4:7514600-7514619 MS.gene058469:CDS 55.0%
GAGGTGTGGCAGTCAAGAAC+AGG - chr1.4:7514905-7514924 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG + chr1.4:7515036-7515055 MS.gene058469:CDS 55.0%
GCTCTTCCCGGTGACAATGT+GGG + chr1.4:7514731-7514750 MS.gene058469:CDS 55.0%
GGAATTGGGACTGTGCCTGT+GGG + chr1.4:7514599-7514618 MS.gene058469:CDS 55.0%
GGCTTGTCTGATGGCCTCTT+AGG - chr1.4:7514542-7514561 None:intergenic 55.0%
GGTGTGGCAGTCAAGAACAG+GGG - chr1.4:7514903-7514922 None:intergenic 55.0%
GTGGAGAAGAAGGATCCCAG+CGG + chr1.4:7515148-7515167 MS.gene058469:CDS 55.0%
TCATTGATGCCCCTGGACAC+AGG + chr1.4:7514033-7514052 MS.gene058469:CDS 55.0%
TCCTGAAGTGGTAGTCGGAG+GGG - chr1.4:7514563-7514582 None:intergenic 55.0%
TGACAGCAATGTGGGAGGTG+TGG - chr1.4:7514919-7514938 None:intergenic 55.0%
TGCACTGTCATTGATGCCCC+TGG + chr1.4:7514026-7514045 MS.gene058469:CDS 55.0%
TTGACTTCCCGGAGTCGACA+TGG - chr1.4:7513812-7513831 None:intergenic 55.0%
! ACCAGTGGTGGTTGACTTCC+CGG - chr1.4:7513823-7513842 None:intergenic 55.0%
! TCAACCACCATGGGCTTGGT+GGG - chr1.4:7515046-7515065 None:intergenic 55.0%
!! CACTTGGCCGTTTTGCTGTC+AGG + chr1.4:7515086-7515105 MS.gene058469:CDS 55.0%
!! GTCATTGGCCATGTCGACTC+CGG + chr1.4:7513801-7513820 MS.gene058469:CDS 55.0%
!! TCATTGGCCATGTCGACTCC+GGG + chr1.4:7513802-7513821 MS.gene058469:CDS 55.0%
AAGTTAGCGGCCTCCTTGGC+AGG - chr1.4:7514827-7514846 None:intergenic 60.0%
AGTCGGAGGGGCTTGTCTGA+TGG - chr1.4:7514551-7514570 None:intergenic 60.0%
AGTTAGCGGCCTCCTTGGCA+GGG - chr1.4:7514826-7514845 None:intergenic 60.0%
CAAGGATGACCCTGCCAAGG+AGG + chr1.4:7514814-7514833 MS.gene058469:CDS 60.0%
CTCAACCACCATGGGCTTGG+TGG - chr1.4:7515047-7515066 None:intergenic 60.0%
CTCCAAGGATGACCCTGCCA+AGG + chr1.4:7514811-7514830 MS.gene058469:CDS 60.0%
CTCCTTGGCAGGGTCATCCT+TGG - chr1.4:7514816-7514835 None:intergenic 60.0%
GAGAAGAAGGATCCCAGCGG+AGG + chr1.4:7515151-7515170 MS.gene058469:CDS 60.0%
GATTCCCACCAAGCCCATGG+TGG + chr1.4:7515039-7515058 MS.gene058469:CDS 60.0%
GCTCTCACTGAGGCTCTTCC+CGG + chr1.4:7514719-7514738 MS.gene058469:CDS 60.0%
GGCTCTTCCCGGTGACAATG+TGG + chr1.4:7514730-7514749 MS.gene058469:CDS 60.0%
TCCGGGAAGTCAACCACCAC+TGG + chr1.4:7513819-7513838 MS.gene058469:CDS 60.0%
GCCCCTCCGACTACCACTTC+AGG + chr1.4:7514559-7514578 MS.gene058469:CDS 65.0%
CCAGTCTCGACACGCCCCAC+AGG - chr1.4:7514617-7514636 None:intergenic 70.0%
CCTGTGGGGCGTGTCGAGAC+TGG + chr1.4:7514614-7514633 MS.gene058469:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 7513768 7515210 7513768 ID=MS.gene058469
chr1.4 mRNA 7513768 7515210 7513768 ID=MS.gene058469.t1;Parent=MS.gene058469
chr1.4 exon 7513768 7514229 7513768 ID=MS.gene058469.t1.exon1;Parent=MS.gene058469.t1
chr1.4 CDS 7513768 7514229 7513768 ID=cds.MS.gene058469.t1;Parent=MS.gene058469.t1
chr1.4 exon 7514326 7515210 7514326 ID=MS.gene058469.t1.exon2;Parent=MS.gene058469.t1
chr1.4 CDS 7514326 7515210 7514326 ID=cds.MS.gene058469.t1;Parent=MS.gene058469.t1
Gene Sequence

>MS.gene058469

ATGGGTAAGGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCCGGGAAGTCAACCACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTGCTCGACAAGCTCAAAGCTGAACGTGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACTACTAAGTACTACTGCACTGTCATTGATGCCCCTGGACACAGGGATTTCATTAAGAACATGATTACTGGAACATCTCAAGCTGATTGCGCTGTTCTGATCATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATTTCAAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATTTGTTGCTGCAACAAGGTATTTGAACGTTTTAGCCCTTTGAAGGTGCCTCTGATTATTATTGTAATTACTTTATTTATACAAGTTCTTATTGTTTTTTGCTATCTTGAACAGATGGATGCCACTACACCAAAGTACTCGAAGGGTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTATAACCCAGACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAATCTTGACTGGTACAAGGGTCCTACCCTTCTTGAGGCTCTTGACCAAATCAACGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGACTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGGACTGTGCCTGTGGGGCGTGTCGAGACTGGTGTCATAAAACCTGGAATGGTTGTCACTTTTGCCCCTACTGGACTGACAACTGAAGTCAAGTCTGTGGAAATGCATCATGAAGCTCTCACTGAGGCTCTTCCCGGTGACAATGTGGGATTTAATGTTAAGAACGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCCGCTAACTTTACTTCTCAAGTGATCATCATGAATCACCCTGGCCAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAATTTGCTGAGCTTGTTACTAAGATTGACAGGCGTTCTGGAAAGGAGATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCAAGCCCATGGTGGTTGAGACTTTCTCTGAGTATCCTCCACTTGGCCGTTTTGCTGTCAGGGATATGCGTCAAACTGTGGCTGTTGGTGTTATCAAGGCTGTGGAGAAGAAGGATCCCAGCGGAGGACTTAATAAAACAAAGTCAGCATTGAAGAAGAAGTGA

Protein sequence

>MS.gene058469.t1

MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGGLNKTKSALKKK