AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016105


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016105.t1 MTR_1g495705 99.554 448 2 0 1 448 1 448 0.0 918
MS.gene016105.t1 MTR_1g095650 99.554 448 2 0 1 448 1 448 0.0 918
MS.gene016105.t1 MTR_1g095703 99.330 448 3 0 1 448 1 448 0.0 917
MS.gene016105.t1 MTR_6g021800 96.429 448 15 1 1 448 1 447 0.0 893
MS.gene016105.t1 MTR_6g021805 96.429 448 15 1 1 448 1 447 0.0 893
MS.gene016105.t1 MTR_4g014810 96.205 448 16 1 1 448 1 447 0.0 888
MS.gene016105.t1 MTR_1g013680 96.231 451 14 1 1 448 1 451 0.0 886
MS.gene016105.t1 MTR_1g085410 82.719 434 75 0 1 434 1 434 0.0 744
MS.gene016105.t1 MTR_1g101870 82.151 437 73 3 1 437 1 432 0.0 736
MS.gene016105.t1 MTR_1g101870 82.151 437 73 3 1 437 1 432 0.0 734
MS.gene016105.t1 MTR_1g024175 79.263 434 90 0 1 434 1 434 0.0 728
MS.gene016105.t1 MTR_8g014590 79.955 449 88 1 1 447 1 449 0.0 724
MS.gene016105.t1 MTR_1g095650 99.424 347 2 0 102 448 1 347 0.0 709
MS.gene016105.t1 MTR_2g082730 72.644 435 102 2 1 433 1 420 0.0 645
MS.gene016105.t1 MTR_5g037350 67.872 470 114 1 3 435 13 482 0.0 635
MS.gene016105.t1 MTR_1g089520 71.395 430 105 3 4 432 5 417 0.0 628
MS.gene016105.t1 MTR_2g082665 67.586 435 98 2 1 433 1 394 0.0 587
MS.gene016105.t1 MTR_2g037420 65.820 433 105 3 1 431 1 392 0.0 562
MS.gene016105.t1 MTR_8g013910 63.920 449 127 5 1 433 1 430 0.0 551
MS.gene016105.t1 MTR_2g080210 64.828 435 117 4 1 432 1 402 0.0 551
MS.gene016105.t1 MTR_8g008740 78.462 325 69 1 1 324 1 325 0.0 539
MS.gene016105.t1 MTR_1g112460 66.107 298 60 4 155 447 1 262 1.11e-126 368
MS.gene016105.t1 MTR_1g495735 76.617 201 37 1 240 430 106 306 1.63e-101 305
MS.gene016105.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 5.30e-17 82.0
MS.gene016105.t1 MTR_6g080420 37.963 432 254 6 5 428 89 514 5.19e-97 301
MS.gene016105.t1 MTR_8g106700 37.963 432 258 6 4 429 43 470 8.11e-94 291
MS.gene016105.t1 MTR_8g106700 37.963 432 258 6 4 429 49 476 9.12e-94 291
MS.gene016105.t1 MTR_8g106700 37.963 432 258 6 4 429 70 497 2.46e-93 291
MS.gene016105.t1 MTR_8g087950 36.028 433 268 6 7 433 275 704 1.06e-91 292
MS.gene016105.t1 MTR_8g087950 36.028 433 268 6 7 433 348 777 5.28e-91 292
MS.gene016105.t1 MTR_1g101880 87.013 154 20 0 1 154 1 154 8.65e-90 274
MS.gene016105.t1 MTR_4g054970 57.025 242 75 4 193 431 50 265 3.11e-81 252
MS.gene016105.t1 MTR_4g054970 75.000 44 11 0 1 44 1 44 7.74e-13 68.9
MS.gene016105.t1 MTR_1g024165 81.429 140 26 0 6 145 10 149 1.42e-78 241
MS.gene016105.t1 MTR_8g014950 76.471 102 24 0 3 104 4 105 1.74e-47 159
MS.gene016105.t1 MTR_7g094460 30.365 438 245 14 3 429 59 447 1.36e-45 164
MS.gene016105.t1 MTR_7g098190 53.892 167 51 5 56 220 10 152 8.88e-43 149
MS.gene016105.t1 MTR_2g021300 29.613 439 247 12 3 429 46 434 4.95e-42 154
MS.gene016105.t1 MTR_3g076660 29.955 444 250 15 3 429 88 487 7.17e-41 152
MS.gene016105.t1 MTR_8g014960 64.634 82 29 0 213 294 2 83 2.31e-28 110
MS.gene016105.t1 MTR_3g097250 26.471 272 143 9 9 272 85 307 1.53e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016105.t1 AT5G60390 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene016105.t1 AT5G60390 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene016105.t1 AT5G60390 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene016105.t1 AT1G07920 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene016105.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene016105.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene016105.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene016105.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene016105.t1 AT1G07930 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene016105.t1 AT1G07930 98.824 255 3 0 1 255 1 255 0.0 530
MS.gene016105.t1 AT1G07930 86.325 117 15 1 331 447 254 369 4.46e-64 211
MS.gene016105.t1 AT1G18070 37.647 425 257 5 5 424 99 520 3.35e-94 294
MS.gene016105.t1 AT1G18070 37.647 425 257 5 5 424 99 520 3.35e-94 294
MS.gene016105.t1 AT1G18070 36.927 436 256 6 5 424 99 531 3.41e-91 286
MS.gene016105.t1 AT5G10630 35.765 425 265 5 7 426 239 660 1.02e-90 289
MS.gene016105.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.05e-90 289
MS.gene016105.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.05e-90 289
MS.gene016105.t1 AT5G10630 35.765 425 265 5 7 426 310 731 5.91e-90 289
MS.gene016105.t1 AT5G10630 35.765 425 265 5 7 426 315 736 6.36e-90 289
MS.gene016105.t1 AT1G35550 78.641 103 22 0 335 437 1 103 1.45e-53 174
MS.gene016105.t1 AT4G02930 30.296 439 245 15 3 429 63 452 7.48e-44 160
MS.gene016105.t1 AT4G20360 30.137 438 257 10 3 429 75 474 9.49e-44 160
MS.gene016105.t1 AT4G20360 30.137 438 257 10 3 429 75 474 9.49e-44 160
MS.gene016105.t1 AT2G31060 25.000 264 160 8 9 263 61 295 3.08e-12 69.3
MS.gene016105.t1 AT5G08650 26.667 270 145 10 9 272 88 310 2.86e-11 65.9
MS.gene016105.t1 AT5G08650 26.667 270 145 10 9 272 88 310 2.92e-11 66.2
MS.gene016105.t1 AT2G31060 24.615 260 162 7 9 263 61 291 3.76e-11 65.9

Find 135 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCATTCTTCAAGAATT+TGG 0.066665 1.2:-7697091 None:intergenic
GTCTACAAGATTGGAGGAAT+TGG 0.281818 1.2:+7696676 MS.gene016105:CDS
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 1.2:+7696268 MS.gene016105:CDS
TTCATTAAGAACATGATTAC+TGG 0.308905 1.2:+7696151 MS.gene016105:CDS
TGTTAAGAACGTTGCTGTTA+AGG 0.312399 1.2:+7696852 MS.gene016105:CDS
GCCTCTTAGGCTCGTTGATT+TGG 0.315296 1.2:-7696618 None:intergenic
ACCAGTGGTGGTTGACTTCC+CGG 0.329357 1.2:-7695912 None:intergenic
CACATTAACATTGTTGTCAT+TGG 0.329838 1.2:+7695878 MS.gene016105:CDS
TCACCATTCTTCAAGAATTT+GGG 0.331757 1.2:-7697090 None:intergenic
ATAGCCAACCTTCTTCAAAT+AGG 0.332380 1.2:-7696482 None:intergenic
ACTAAGATTGACAGGCGTTC+TGG 0.356033 1.2:+7697048 MS.gene016105:CDS
GAGGTGTGGCAGTCAAGAAC+AGG 0.357372 1.2:-7696994 None:intergenic
GCTCTCACTGAGGCTCTTCC+CGG 0.361996 1.2:+7696811 MS.gene016105:CDS
ATTCCATTTGTTCCCATCTC+TGG 0.368209 1.2:+7696517 MS.gene016105:CDS
AAGTTAGCGGCCTCCTTGGC+AGG 0.394061 1.2:-7696916 None:intergenic
CTGATCATTGATTCCACTAC+TGG 0.405045 1.2:+7696199 MS.gene016105:CDS
CTCCTTGGCAGGGTCATCCT+TGG 0.412873 1.2:-7696905 None:intergenic
ATGAATCACCCTGGCCAGAT+TGG 0.417716 1.2:+7696958 MS.gene016105:CDS
GCAAAAGTGACAACCATTCC+AGG 0.418006 1.2:-7696739 None:intergenic
CCTGTGGGGCGTGTCGAGAC+TGG 0.431830 1.2:+7696706 MS.gene016105:CDS
GGCTTGTCTGATGGCCTCTT+AGG 0.432559 1.2:-7696631 None:intergenic
CACCCTGGCCAGATTGGAAA+TGG 0.432985 1.2:+7696964 MS.gene016105:CDS
GCCCCTCCGACTACCACTTC+AGG 0.433104 1.2:+7696651 MS.gene016105:CDS
AGGACAAATGGGTAAGGAAA+AGG 0.440646 1.2:+7695853 None:intergenic
GGGCATAGCCATTTCCAATC+TGG 0.448022 1.2:-7696972 None:intergenic
AAACCAGAGATGGGAACAAA+TGG 0.449170 1.2:-7696520 None:intergenic
CTGACCATCCTTTGAAATAC+CGG 0.450328 1.2:-7696233 None:intergenic
GTCATTGGCCATGTCGACTC+CGG 0.454084 1.2:+7695893 MS.gene016105:CDS
ACTTCAGTTGTCAGTCCAGT+AGG 0.456008 1.2:-7696763 None:intergenic
CTTCAGGATGTCTACAAGAT+TGG 0.458119 1.2:+7696667 MS.gene016105:CDS
AGCGTTCATTCAAGTATGCT+TGG 0.461530 1.2:+7696011 MS.gene016105:CDS
AGTCTCAACCACCATGGGCT+TGG 0.462350 1.2:-7697139 None:intergenic
AGGAATTGGGACTGTGCCTG+TGG 0.463901 1.2:+7696690 MS.gene016105:CDS
TCTACAAGATTGGAGGAATT+GGG 0.467601 1.2:+7696677 MS.gene016105:CDS
ACCAAATCAACGAGCCTAAG+AGG 0.467614 1.2:+7696617 MS.gene016105:CDS
CTCAACCACCATGGGCTTGG+TGG 0.468734 1.2:-7697136 None:intergenic
TAGCCATTTCCAATCTGGCC+AGG 0.474048 1.2:-7696967 None:intergenic
TGCACTGTCATTGATGCCCC+TGG 0.477178 1.2:+7696118 MS.gene016105:CDS
TTAATGAAATCCCTGTGTCC+AGG 0.479234 1.2:-7696136 None:intergenic
TACCTACCCTTCGAGTACTT+TGG 0.480160 1.2:-7696433 None:intergenic
GCGTTCATTCAAGTATGCTT+GGG 0.487854 1.2:+7696012 MS.gene016105:CDS
TCATCCTATTTGAAGAAGGT+TGG 0.491235 1.2:+7696478 MS.gene016105:CDS
AGCAAATTTGACAGCAATGT+GGG 0.494938 1.2:-7697016 None:intergenic
AGTAAAGTTAGCGGCCTCCT+TGG 0.495389 1.2:-7696920 None:intergenic
AGTCGGAGGGGCTTGTCTGA+TGG 0.496444 1.2:-7696640 None:intergenic
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 1.2:-7696530 None:intergenic
GGAATTGGGACTGTGCCTGT+GGG 0.501531 1.2:+7696691 MS.gene016105:CDS
AGTTTCATCCTATTTGAAGA+AGG 0.501588 1.2:+7696474 MS.gene016105:CDS
ATCATTGATTCCACTACTGG+TGG 0.502099 1.2:+7696202 MS.gene016105:CDS
TACAAATCTTGACTGGTACA+AGG 0.502738 1.2:+7696570 MS.gene016105:CDS
AGCTTGTTACTAAGATTGAC+AGG 0.504274 1.2:+7697040 MS.gene016105:CDS
CTTCAGTTGTCAGTCCAGTA+GGG 0.506099 1.2:-7696762 None:intergenic
ATTAAATCCCACATTGTCAC+CGG 0.519224 1.2:-7696830 None:intergenic
TCCGGGAAGTCAACCACCAC+TGG 0.520912 1.2:+7695911 MS.gene016105:CDS
AGGGTCATCCTTGGAGTTTG+AGG 0.522734 1.2:-7696896 None:intergenic
CAGGATGTCTACAAGATTGG+AGG 0.523217 1.2:+7696670 MS.gene016105:CDS
TCATTGGCCATGTCGACTCC+GGG 0.523741 1.2:+7695894 MS.gene016105:CDS
TAATGAAATCCCTGTGTCCA+GGG 0.528272 1.2:-7696135 None:intergenic
GAGCCCAAATTCTTGAAGAA+TGG 0.528480 1.2:+7697087 MS.gene016105:CDS
TTCTCTGAGTATCCTCCACT+TGG 0.530256 1.2:+7697162 MS.gene016105:CDS
TATCAAGGCTGTGGAGAAGA+AGG 0.530959 1.2:+7697230 MS.gene016105:CDS
CTCAAAGCTGAACGTGAAAG+AGG 0.531334 1.2:+7696046 MS.gene016105:CDS
CATTGATGCCCCTGGACACA+GGG 0.535845 1.2:+7696126 MS.gene016105:CDS
TCATTGATGCCCCTGGACAC+AGG 0.539611 1.2:+7696125 MS.gene016105:CDS
TGTGGCTGTTGGTGTTATCA+AGG 0.541484 1.2:+7697215 MS.gene016105:CDS
CTTCGAGTACTTTGGTGTAG+TGG 0.545264 1.2:-7696425 None:intergenic
CACTTGATCTACAAGCTTGG+AGG 0.545798 1.2:+7695935 MS.gene016105:CDS
GAGAAAGTCTCAACCACCAT+GGG 0.549740 1.2:-7697144 None:intergenic
GATTGACAGGCGTTCTGGAA+AGG 0.550491 1.2:+7697053 MS.gene016105:CDS
GGCTTCAAAACCACCAGTAG+TGG 0.551737 1.2:-7696212 None:intergenic
GGCTCTTCCCGGTGACAATG+TGG 0.552654 1.2:+7696822 MS.gene016105:CDS
GGTCACTTGATCTACAAGCT+TGG 0.555547 1.2:+7695932 MS.gene016105:CDS
CCAGTCTCGACACGCCCCAC+AGG 0.557031 1.2:-7696706 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.557624 1.2:-7697135 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 1.2:-7696258 None:intergenic
AGGTGTGGCAGTCAAGAACA+GGG 0.559985 1.2:-7696993 None:intergenic
CACTTGAGAAGTAAAGTTAG+CGG 0.560708 1.2:-7696929 None:intergenic
TTCTTGAAGAATGGTGATGC+TGG 0.561159 1.2:+7697096 MS.gene016105:CDS
TTGACAAGCGTGTGATTGAG+AGG 0.564366 1.2:+7695960 MS.gene016105:CDS
ACAAATCTTGACTGGTACAA+GGG 0.566035 1.2:+7696571 MS.gene016105:CDS
TTTGGTCAAGAGCCTCAAGA+AGG 0.570297 1.2:-7696600 None:intergenic
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 1.2:-7696257 None:intergenic
GAAGCCGGTATTTCAAAGGA+TGG 0.572749 1.2:+7696229 MS.gene016105:CDS
TTGACTTCCCGGAGTCGACA+TGG 0.574810 1.2:-7695901 None:intergenic
ATCCTGAAGTGGTAGTCGGA+GGG 0.576252 1.2:-7696653 None:intergenic
GAGACTGGTGTCATAAAACC+TGG 0.585699 1.2:+7696721 MS.gene016105:CDS
CAAGGGTCCTACCCTTCTTG+AGG 0.587059 1.2:+7696588 MS.gene016105:CDS
GCTCTTCCCGGTGACAATGT+GGG 0.588610 1.2:+7696823 MS.gene016105:CDS
GCATATCCCTGACAGCAAAA+CGG 0.593078 1.2:-7697185 None:intergenic
TGTTGGTGTTATCAAGGCTG+TGG 0.597147 1.2:+7697221 MS.gene016105:CDS
TAGGTATGATGAAATTGTGA+AGG 0.599770 1.2:+7696450 MS.gene016105:CDS
CACTACACCAAAGTACTCGA+AGG 0.602464 1.2:+7696426 MS.gene016105:CDS
ATGCGTCAAACTGTGGCTGT+TGG 0.604242 1.2:+7697204 MS.gene016105:CDS
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 1.2:-7696529 None:intergenic
TCCTGAAGTGGTAGTCGGAG+GGG 0.608492 1.2:-7696652 None:intergenic
AGCGCTCTACAAATCTTGAC+TGG 0.610562 1.2:+7696563 MS.gene016105:CDS
GATGATTCCCACCAAGCCCA+TGG 0.611182 1.2:+7697128 MS.gene016105:CDS
GAATTGGGACTGTGCCTGTG+GGG 0.615616 1.2:+7696692 MS.gene016105:CDS
GACAACTGAAGTCAAGTCTG+TGG 0.617234 1.2:+7696774 MS.gene016105:CDS
CTCCAAGGATGACCCTGCCA+AGG 0.619064 1.2:+7696903 MS.gene016105:CDS
TCAAGAGCCTCAAGAAGGGT+AGG 0.620041 1.2:-7696595 None:intergenic
TCACACCAAGAGTGAAAGCA+AGG 0.621193 1.2:-7696273 None:intergenic
ATCTTGTAGACATCCTGAAG+TGG 0.621388 1.2:-7696664 None:intergenic
TTCAGTTGTCAGTCCAGTAG+GGG 0.622733 1.2:-7696761 None:intergenic
AGCCATTTCCAATCTGGCCA+GGG 0.623271 1.2:-7696966 None:intergenic
ACAGCAAAACGGCCAAGTGG+AGG 0.624787 1.2:-7697174 None:intergenic
TGGTGTCATAAAACCTGGAA+TGG 0.625384 1.2:+7696726 MS.gene016105:CDS
AGAGAAAGTCTCAACCACCA+TGG 0.628507 1.2:-7697145 None:intergenic
AATGATTTGTTGCTGCAACA+AGG 0.628678 1.2:+7696300 MS.gene016105:CDS
TTCTGGAAAGGAGATTGAGA+AGG 0.629354 1.2:+7697065 MS.gene016105:CDS
TTATGTTGCCTCAAACTCCA+AGG 0.633897 1.2:+7696888 MS.gene016105:CDS
AGTTAGCGGCCTCCTTGGCA+GGG 0.634693 1.2:-7696915 None:intergenic
CAAGGATGACCCTGCCAAGG+AGG 0.636072 1.2:+7696906 MS.gene016105:CDS
CATCCTGAAGTGGTAGTCGG+AGG 0.637451 1.2:-7696654 None:intergenic
AGACATCCTGAAGTGGTAGT+CGG 0.638051 1.2:-7696657 None:intergenic
CAGCAAATTTGACAGCAATG+TGG 0.639349 1.2:-7697017 None:intergenic
TTGGTCAAGAGCCTCAAGAA+GGG 0.643393 1.2:-7696599 None:intergenic
TGACAGCAATGTGGGAGGTG+TGG 0.647495 1.2:-7697008 None:intergenic
CACCAAAGTACTCGAAGGGT+AGG 0.649681 1.2:+7696431 MS.gene016105:CDS
AATGAAATCCCTGTGTCCAG+GGG 0.656838 1.2:-7696134 None:intergenic
GCTGTTAAGGATCTCAAGCG+TGG 0.663761 1.2:+7696865 MS.gene016105:CDS
TTAAATCCCACATTGTCACC+GGG 0.665158 1.2:-7696829 None:intergenic
ACTACACCAAAGTACTCGAA+GGG 0.668068 1.2:+7696427 MS.gene016105:CDS
CAGGGATATGCGTCAAACTG+TGG 0.672188 1.2:+7697197 MS.gene016105:CDS
GAGAAGAAGGATCCCAGCGG+AGG 0.673598 1.2:+7697243 MS.gene016105:CDS
AAATTTGACAGCAATGTGGG+AGG 0.676474 1.2:-7697013 None:intergenic
CTGACAGCAAAACGGCCAAG+TGG 0.682401 1.2:-7697177 None:intergenic
CTTGTAGATCAAGTGACCAG+TGG 0.682705 1.2:-7695927 None:intergenic
GTGATCATCATGAATCACCC+TGG 0.684375 1.2:+7696949 MS.gene016105:CDS
GTAGATCAAGTGACCAGTGG+TGG 0.699002 1.2:-7695924 None:intergenic
TCACAATTGACATTGCTCTG+TGG 0.708352 1.2:+7696071 MS.gene016105:CDS
GGTGTGGCAGTCAAGAACAG+GGG 0.711459 1.2:-7696992 None:intergenic
GATTCCCACCAAGCCCATGG+TGG 0.723849 1.2:+7697131 MS.gene016105:CDS
GCATCATGAAGCTCTCACTG+AGG 0.742195 1.2:+7696801 MS.gene016105:CDS
GTGGAGAAGAAGGATCCCAG+CGG 0.769725 1.2:+7697240 MS.gene016105:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATTACAATAATAATCAG+AGG - chr1.2:7696355-7696374 None:intergenic 20.0%
! TTCATTAAGAACATGATTAC+TGG + chr1.2:7696151-7696170 MS.gene016105:CDS 25.0%
AGTTTCATCCTATTTGAAGA+AGG + chr1.2:7696474-7696493 MS.gene016105:CDS 30.0%
ATCACCATTCTTCAAGAATT+TGG - chr1.2:7697094-7697113 None:intergenic 30.0%
CACATTAACATTGTTGTCAT+TGG + chr1.2:7695878-7695897 MS.gene016105:CDS 30.0%
TAGGTATGATGAAATTGTGA+AGG + chr1.2:7696450-7696469 MS.gene016105:CDS 30.0%
TCACCATTCTTCAAGAATTT+GGG - chr1.2:7697093-7697112 None:intergenic 30.0%
! GAACAAATGGAATTTTGTCT+GGG - chr1.2:7696510-7696529 None:intergenic 30.0%
!! TTTTTGCTATCTTGAACAGA+TGG + chr1.2:7696399-7696418 MS.gene016105:intron 30.0%
ACAAATCTTGACTGGTACAA+GGG + chr1.2:7696571-7696590 MS.gene016105:CDS 35.0%
AGCAAATTTGACAGCAATGT+GGG - chr1.2:7697019-7697038 None:intergenic 35.0%
ATAGCCAACCTTCTTCAAAT+AGG - chr1.2:7696485-7696504 None:intergenic 35.0%
ATTAAATCCCACATTGTCAC+CGG - chr1.2:7696833-7696852 None:intergenic 35.0%
CACTTGAGAAGTAAAGTTAG+CGG - chr1.2:7696932-7696951 None:intergenic 35.0%
TACAAATCTTGACTGGTACA+AGG + chr1.2:7696570-7696589 MS.gene016105:CDS 35.0%
TCATCCTATTTGAAGAAGGT+TGG + chr1.2:7696478-7696497 MS.gene016105:CDS 35.0%
TCTACAAGATTGGAGGAATT+GGG + chr1.2:7696677-7696696 MS.gene016105:CDS 35.0%
! GGAACAAATGGAATTTTGTC+TGG - chr1.2:7696511-7696530 None:intergenic 35.0%
! TGTTAAGAACGTTGCTGTTA+AGG + chr1.2:7696852-7696871 MS.gene016105:CDS 35.0%
!! AATGATTTGTTGCTGCAACA+AGG + chr1.2:7696300-7696319 MS.gene016105:CDS 35.0%
!! AGCTTGTTACTAAGATTGAC+AGG + chr1.2:7697040-7697059 MS.gene016105:CDS 35.0%
!!! TTTTGAAGCCGGTATTTCAA+AGG + chr1.2:7696225-7696244 MS.gene016105:CDS 35.0%
AAACCAGAGATGGGAACAAA+TGG - chr1.2:7696523-7696542 None:intergenic 40.0%
AAATTTGACAGCAATGTGGG+AGG - chr1.2:7697016-7697035 None:intergenic 40.0%
AGCGTTCATTCAAGTATGCT+TGG + chr1.2:7696011-7696030 MS.gene016105:CDS 40.0%
ATCTTGTAGACATCCTGAAG+TGG - chr1.2:7696667-7696686 None:intergenic 40.0%
ATTCCATTTGTTCCCATCTC+TGG + chr1.2:7696517-7696536 MS.gene016105:CDS 40.0%
CAGCAAATTTGACAGCAATG+TGG - chr1.2:7697020-7697039 None:intergenic 40.0%
CTTCAGGATGTCTACAAGAT+TGG + chr1.2:7696667-7696686 MS.gene016105:CDS 40.0%
GAGCCCAAATTCTTGAAGAA+TGG + chr1.2:7697087-7697106 MS.gene016105:CDS 40.0%
GCGTTCATTCAAGTATGCTT+GGG + chr1.2:7696012-7696031 MS.gene016105:CDS 40.0%
GTCTACAAGATTGGAGGAAT+TGG + chr1.2:7696676-7696695 MS.gene016105:CDS 40.0%
TAATGAAATCCCTGTGTCCA+GGG - chr1.2:7696138-7696157 None:intergenic 40.0%
TCACAATTGACATTGCTCTG+TGG + chr1.2:7696071-7696090 MS.gene016105:CDS 40.0%
TTAAATCCCACATTGTCACC+GGG - chr1.2:7696832-7696851 None:intergenic 40.0%
TTAATGAAATCCCTGTGTCC+AGG - chr1.2:7696139-7696158 None:intergenic 40.0%
TTATGTTGCCTCAAACTCCA+AGG + chr1.2:7696888-7696907 MS.gene016105:CDS 40.0%
! ACTACACCAAAGTACTCGAA+GGG + chr1.2:7696427-7696446 MS.gene016105:CDS 40.0%
! TTCTGGAAAGGAGATTGAGA+AGG + chr1.2:7697065-7697084 MS.gene016105:CDS 40.0%
! TTCTTGAAGAATGGTGATGC+TGG + chr1.2:7697096-7697115 MS.gene016105:CDS 40.0%
!! ATAATCAGAGGCACCTTCAA+AGG - chr1.2:7696343-7696362 None:intergenic 40.0%
!! ATCATTGATTCCACTACTGG+TGG + chr1.2:7696202-7696221 MS.gene016105:CDS 40.0%
!! CTGACCATCCTTTGAAATAC+CGG - chr1.2:7696236-7696255 None:intergenic 40.0%
!! CTGATCATTGATTCCACTAC+TGG + chr1.2:7696199-7696218 MS.gene016105:CDS 40.0%
!! GTTTTATTAAGTCCTCCGCT+GGG - chr1.2:7697258-7697277 None:intergenic 40.0%
!! TAATCAGAGGCACCTTCAAA+GGG - chr1.2:7696342-7696361 None:intergenic 40.0%
!! TGAACGTTTTAGCCCTTTGA+AGG + chr1.2:7696327-7696346 MS.gene016105:intron 40.0%
!! TGGTGTCATAAAACCTGGAA+TGG + chr1.2:7696726-7696745 MS.gene016105:CDS 40.0%
!! TGTTTTATTAAGTCCTCCGC+TGG - chr1.2:7697259-7697278 None:intergenic 40.0%
AATGAAATCCCTGTGTCCAG+GGG - chr1.2:7696137-7696156 None:intergenic 45.0%
ACCAAATCAACGAGCCTAAG+AGG + chr1.2:7696617-7696636 MS.gene016105:CDS 45.0%
ACTAAGATTGACAGGCGTTC+TGG + chr1.2:7697048-7697067 MS.gene016105:CDS 45.0%
ACTTCAGTTGTCAGTCCAGT+AGG - chr1.2:7696766-7696785 None:intergenic 45.0%
AGACATCCTGAAGTGGTAGT+CGG - chr1.2:7696660-7696679 None:intergenic 45.0%
AGAGAAAGTCTCAACCACCA+TGG - chr1.2:7697148-7697167 None:intergenic 45.0%
AGCGCTCTACAAATCTTGAC+TGG + chr1.2:7696563-7696582 MS.gene016105:CDS 45.0%
ATCTCCCTCAAAACCAGAGA+TGG - chr1.2:7696533-7696552 None:intergenic 45.0%
CACTTGATCTACAAGCTTGG+AGG + chr1.2:7695935-7695954 MS.gene016105:CDS 45.0%
CAGGATGTCTACAAGATTGG+AGG + chr1.2:7696670-7696689 MS.gene016105:CDS 45.0%
CTCAAAGCTGAACGTGAAAG+AGG + chr1.2:7696046-7696065 MS.gene016105:CDS 45.0%
CTTCAGTTGTCAGTCCAGTA+GGG - chr1.2:7696765-7696784 None:intergenic 45.0%
CTTGTAGATCAAGTGACCAG+TGG - chr1.2:7695930-7695949 None:intergenic 45.0%
GAAGCCGGTATTTCAAAGGA+TGG + chr1.2:7696229-7696248 MS.gene016105:CDS 45.0%
GACAACTGAAGTCAAGTCTG+TGG + chr1.2:7696774-7696793 MS.gene016105:CDS 45.0%
GAGAAAGTCTCAACCACCAT+GGG - chr1.2:7697147-7697166 None:intergenic 45.0%
GCAAAAGTGACAACCATTCC+AGG - chr1.2:7696742-7696761 None:intergenic 45.0%
GCATATCCCTGACAGCAAAA+CGG - chr1.2:7697188-7697207 None:intergenic 45.0%
GGTCACTTGATCTACAAGCT+TGG + chr1.2:7695932-7695951 MS.gene016105:CDS 45.0%
GTGATCATCATGAATCACCC+TGG + chr1.2:7696949-7696968 MS.gene016105:CDS 45.0%
TACCTACCCTTCGAGTACTT+TGG - chr1.2:7696436-7696455 None:intergenic 45.0%
TATCAAGGCTGTGGAGAAGA+AGG + chr1.2:7697230-7697249 MS.gene016105:CDS 45.0%
TCACACCAAGAGTGAAAGCA+AGG - chr1.2:7696276-7696295 None:intergenic 45.0%
TCTCCCTCAAAACCAGAGAT+GGG - chr1.2:7696532-7696551 None:intergenic 45.0%
TTCAGTTGTCAGTCCAGTAG+GGG - chr1.2:7696764-7696783 None:intergenic 45.0%
TTCTCTGAGTATCCTCCACT+TGG + chr1.2:7697162-7697181 MS.gene016105:CDS 45.0%
TTGACAAGCGTGTGATTGAG+AGG + chr1.2:7695960-7695979 MS.gene016105:CDS 45.0%
TTGGTCAAGAGCCTCAAGAA+GGG - chr1.2:7696602-7696621 None:intergenic 45.0%
TTTGGTCAAGAGCCTCAAGA+AGG - chr1.2:7696603-7696622 None:intergenic 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG - chr1.2:7696261-7696280 None:intergenic 45.0%
! CACTACACCAAAGTACTCGA+AGG + chr1.2:7696426-7696445 MS.gene016105:CDS 45.0%
! CTTCGAGTACTTTGGTGTAG+TGG - chr1.2:7696428-7696447 None:intergenic 45.0%
!! GAGACTGGTGTCATAAAACC+TGG + chr1.2:7696721-7696740 MS.gene016105:CDS 45.0%
!! TGTGGCTGTTGGTGTTATCA+AGG + chr1.2:7697215-7697234 MS.gene016105:CDS 45.0%
!! TGTTGGTGTTATCAAGGCTG+TGG + chr1.2:7697221-7697240 MS.gene016105:CDS 45.0%
!!! ACTACTGGTGGTTTTGAAGC+CGG + chr1.2:7696214-7696233 MS.gene016105:CDS 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG + chr1.2:7696526-7696545 MS.gene016105:CDS 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG + chr1.2:7696525-7696544 MS.gene016105:CDS 45.0%
AGCCATTTCCAATCTGGCCA+GGG - chr1.2:7696969-7696988 None:intergenic 50.0%
AGGGTCATCCTTGGAGTTTG+AGG - chr1.2:7696899-7696918 None:intergenic 50.0%
AGGTGTGGCAGTCAAGAACA+GGG - chr1.2:7696996-7697015 None:intergenic 50.0%
AGTAAAGTTAGCGGCCTCCT+TGG - chr1.2:7696923-7696942 None:intergenic 50.0%
ATCCTGAAGTGGTAGTCGGA+GGG - chr1.2:7696656-7696675 None:intergenic 50.0%
ATGAATCACCCTGGCCAGAT+TGG + chr1.2:7696958-7696977 MS.gene016105:CDS 50.0%
ATGCGTCAAACTGTGGCTGT+TGG + chr1.2:7697204-7697223 MS.gene016105:CDS 50.0%
CAGGGATATGCGTCAAACTG+TGG + chr1.2:7697197-7697216 MS.gene016105:CDS 50.0%
GCATCATGAAGCTCTCACTG+AGG + chr1.2:7696801-7696820 MS.gene016105:CDS 50.0%
GCTCTCCTTGCTTTCACTCT+TGG + chr1.2:7696268-7696287 MS.gene016105:CDS 50.0%
GCTGTTAAGGATCTCAAGCG+TGG + chr1.2:7696865-7696884 MS.gene016105:CDS 50.0%
GGCTTCAAAACCACCAGTAG+TGG - chr1.2:7696215-7696234 None:intergenic 50.0%
GGGCATAGCCATTTCCAATC+TGG - chr1.2:7696975-7696994 None:intergenic 50.0%
GTAGATCAAGTGACCAGTGG+TGG - chr1.2:7695927-7695946 None:intergenic 50.0%
TAGCCATTTCCAATCTGGCC+AGG - chr1.2:7696970-7696989 None:intergenic 50.0%
TCAAGAGCCTCAAGAAGGGT+AGG - chr1.2:7696598-7696617 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG - chr1.2:7696260-7696279 None:intergenic 50.0%
! CACCAAAGTACTCGAAGGGT+AGG + chr1.2:7696431-7696450 MS.gene016105:CDS 50.0%
! GCCTCTTAGGCTCGTTGATT+TGG - chr1.2:7696621-7696640 None:intergenic 50.0%
!! ACTTGGCCGTTTTGCTGTCA+GGG + chr1.2:7697179-7697198 MS.gene016105:CDS 50.0%
!! GATTGACAGGCGTTCTGGAA+AGG + chr1.2:7697053-7697072 MS.gene016105:CDS 50.0%
!!! GTTGTCACTTTTGCCCCTAC+TGG + chr1.2:7696748-7696767 MS.gene016105:CDS 50.0%
ACAGCAAAACGGCCAAGTGG+AGG - chr1.2:7697177-7697196 None:intergenic 55.0%
AGGAATTGGGACTGTGCCTG+TGG + chr1.2:7696690-7696709 MS.gene016105:CDS 55.0%
AGTCTCAACCACCATGGGCT+TGG - chr1.2:7697142-7697161 None:intergenic 55.0%
CAAGGGTCCTACCCTTCTTG+AGG + chr1.2:7696588-7696607 MS.gene016105:CDS 55.0%
CACCCTGGCCAGATTGGAAA+TGG + chr1.2:7696964-7696983 MS.gene016105:CDS 55.0%
CATCCTGAAGTGGTAGTCGG+AGG - chr1.2:7696657-7696676 None:intergenic 55.0%
CATTGATGCCCCTGGACACA+GGG + chr1.2:7696126-7696145 MS.gene016105:CDS 55.0%
CTGACAGCAAAACGGCCAAG+TGG - chr1.2:7697180-7697199 None:intergenic 55.0%
GAATTGGGACTGTGCCTGTG+GGG + chr1.2:7696692-7696711 MS.gene016105:CDS 55.0%
GAGGTGTGGCAGTCAAGAAC+AGG - chr1.2:7696997-7697016 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG + chr1.2:7697128-7697147 MS.gene016105:CDS 55.0%
GCTCTTCCCGGTGACAATGT+GGG + chr1.2:7696823-7696842 MS.gene016105:CDS 55.0%
GGAATTGGGACTGTGCCTGT+GGG + chr1.2:7696691-7696710 MS.gene016105:CDS 55.0%
GGCTTGTCTGATGGCCTCTT+AGG - chr1.2:7696634-7696653 None:intergenic 55.0%
GGTGTGGCAGTCAAGAACAG+GGG - chr1.2:7696995-7697014 None:intergenic 55.0%
GTGGAGAAGAAGGATCCCAG+CGG + chr1.2:7697240-7697259 MS.gene016105:CDS 55.0%
TCATTGATGCCCCTGGACAC+AGG + chr1.2:7696125-7696144 MS.gene016105:CDS 55.0%
TCCTGAAGTGGTAGTCGGAG+GGG - chr1.2:7696655-7696674 None:intergenic 55.0%
TGACAGCAATGTGGGAGGTG+TGG - chr1.2:7697011-7697030 None:intergenic 55.0%
TGCACTGTCATTGATGCCCC+TGG + chr1.2:7696118-7696137 MS.gene016105:CDS 55.0%
TTGACTTCCCGGAGTCGACA+TGG - chr1.2:7695904-7695923 None:intergenic 55.0%
! ACCAGTGGTGGTTGACTTCC+CGG - chr1.2:7695915-7695934 None:intergenic 55.0%
! TCAACCACCATGGGCTTGGT+GGG - chr1.2:7697138-7697157 None:intergenic 55.0%
!! CACTTGGCCGTTTTGCTGTC+AGG + chr1.2:7697178-7697197 MS.gene016105:CDS 55.0%
!! GTCATTGGCCATGTCGACTC+CGG + chr1.2:7695893-7695912 MS.gene016105:CDS 55.0%
!! TCATTGGCCATGTCGACTCC+GGG + chr1.2:7695894-7695913 MS.gene016105:CDS 55.0%
AAGTTAGCGGCCTCCTTGGC+AGG - chr1.2:7696919-7696938 None:intergenic 60.0%
AGTCGGAGGGGCTTGTCTGA+TGG - chr1.2:7696643-7696662 None:intergenic 60.0%
AGTTAGCGGCCTCCTTGGCA+GGG - chr1.2:7696918-7696937 None:intergenic 60.0%
CAAGGATGACCCTGCCAAGG+AGG + chr1.2:7696906-7696925 MS.gene016105:CDS 60.0%
CTCAACCACCATGGGCTTGG+TGG - chr1.2:7697139-7697158 None:intergenic 60.0%
CTCCAAGGATGACCCTGCCA+AGG + chr1.2:7696903-7696922 MS.gene016105:CDS 60.0%
CTCCTTGGCAGGGTCATCCT+TGG - chr1.2:7696908-7696927 None:intergenic 60.0%
GAGAAGAAGGATCCCAGCGG+AGG + chr1.2:7697243-7697262 MS.gene016105:CDS 60.0%
GATTCCCACCAAGCCCATGG+TGG + chr1.2:7697131-7697150 MS.gene016105:CDS 60.0%
GCTCTCACTGAGGCTCTTCC+CGG + chr1.2:7696811-7696830 MS.gene016105:CDS 60.0%
GGCTCTTCCCGGTGACAATG+TGG + chr1.2:7696822-7696841 MS.gene016105:CDS 60.0%
TCCGGGAAGTCAACCACCAC+TGG + chr1.2:7695911-7695930 MS.gene016105:CDS 60.0%
GCCCCTCCGACTACCACTTC+AGG + chr1.2:7696651-7696670 MS.gene016105:CDS 65.0%
CCAGTCTCGACACGCCCCAC+AGG - chr1.2:7696709-7696728 None:intergenic 70.0%
CCTGTGGGGCGTGTCGAGAC+TGG + chr1.2:7696706-7696725 MS.gene016105:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 7695860 7697302 7695860 ID=MS.gene016105
chr1.2 mRNA 7695860 7697302 7695860 ID=MS.gene016105.t1;Parent=MS.gene016105
chr1.2 exon 7695860 7696321 7695860 ID=MS.gene016105.t1.exon1;Parent=MS.gene016105.t1
chr1.2 CDS 7695860 7696321 7695860 ID=cds.MS.gene016105.t1;Parent=MS.gene016105.t1
chr1.2 exon 7696418 7697302 7696418 ID=MS.gene016105.t1.exon2;Parent=MS.gene016105.t1
chr1.2 CDS 7696418 7697302 7696418 ID=cds.MS.gene016105.t1;Parent=MS.gene016105.t1
Gene Sequence

>MS.gene016105

ATGGGTAAGGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCCGGGAAGTCAACCACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTGCTCGACAAGCTCAAAGCTGAACGTGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACTACTAAGTACTACTGCACTGTCATTGATGCCCCTGGACACAGGGATTTCATTAAGAACATGATTACTGGAACATCTCAAGCTGATTGCGCTGTTCTGATCATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATTTCAAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATTTGTTGCTGCAACAAGGTATTTGAACGTTTTAGCCCTTTGAAGGTGCCTCTGATTATTATTGTAATTACTTTATTTATACAAGTTCTTATTGTTTTTTGCTATCTTGAACAGATGGATGCCACTACACCAAAGTACTCGAAGGGTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTATAACCCAGACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAATCTTGACTGGTACAAGGGTCCTACCCTTCTTGAGGCTCTTGACCAAATCAACGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGACTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGGACTGTGCCTGTGGGGCGTGTCGAGACTGGTGTCATAAAACCTGGAATGGTTGTCACTTTTGCCCCTACTGGACTGACAACTGAAGTCAAGTCTGTGGAAATGCATCATGAAGCTCTCACTGAGGCTCTTCCCGGTGACAATGTGGGATTTAATGTTAAGAACGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCCGCTAACTTTACTTCTCAAGTGATCATCATGAATCACCCTGGCCAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAATTTGCTGAGCTTGTTACTAAGATTGACAGGCGTTCTGGAAAGGAGATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCAAGCCCATGGTGGTTGAGACTTTCTCTGAGTATCCTCCACTTGGCCGTTTTGCTGTCAGGGATATGCGTCAAACTGTGGCTGTTGGTGTTATCAAGGCTGTGGAGAAGAAGGATCCCAGCGGAGGACTTAATAAAACAAAGTCAGCATTGAAGAAGAAGTGA

Protein sequence

>MS.gene016105.t1

MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGGLNKTKSALKKK