AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33103


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33103.t1 MTR_1g495705 99.554 448 2 0 1 448 1 448 0.0 918
MS.gene33103.t1 MTR_1g095650 99.554 448 2 0 1 448 1 448 0.0 918
MS.gene33103.t1 MTR_1g095703 99.330 448 3 0 1 448 1 448 0.0 917
MS.gene33103.t1 MTR_6g021800 96.429 448 15 1 1 448 1 447 0.0 893
MS.gene33103.t1 MTR_6g021805 96.429 448 15 1 1 448 1 447 0.0 893
MS.gene33103.t1 MTR_4g014810 96.205 448 16 1 1 448 1 447 0.0 888
MS.gene33103.t1 MTR_1g013680 96.231 451 14 1 1 448 1 451 0.0 886
MS.gene33103.t1 MTR_1g085410 82.719 434 75 0 1 434 1 434 0.0 744
MS.gene33103.t1 MTR_1g101870 82.151 437 73 3 1 437 1 432 0.0 736
MS.gene33103.t1 MTR_1g101870 82.151 437 73 3 1 437 1 432 0.0 734
MS.gene33103.t1 MTR_1g024175 79.263 434 90 0 1 434 1 434 0.0 728
MS.gene33103.t1 MTR_8g014590 79.955 449 88 1 1 447 1 449 0.0 724
MS.gene33103.t1 MTR_1g095650 99.424 347 2 0 102 448 1 347 0.0 709
MS.gene33103.t1 MTR_2g082730 72.644 435 102 2 1 433 1 420 0.0 645
MS.gene33103.t1 MTR_5g037350 67.872 470 114 1 3 435 13 482 0.0 635
MS.gene33103.t1 MTR_1g089520 71.395 430 105 3 4 432 5 417 0.0 628
MS.gene33103.t1 MTR_2g082665 67.586 435 98 2 1 433 1 394 0.0 587
MS.gene33103.t1 MTR_2g037420 65.820 433 105 3 1 431 1 392 0.0 562
MS.gene33103.t1 MTR_8g013910 63.920 449 127 5 1 433 1 430 0.0 551
MS.gene33103.t1 MTR_2g080210 64.828 435 117 4 1 432 1 402 0.0 551
MS.gene33103.t1 MTR_8g008740 78.462 325 69 1 1 324 1 325 0.0 539
MS.gene33103.t1 MTR_1g112460 66.107 298 60 4 155 447 1 262 1.11e-126 368
MS.gene33103.t1 MTR_1g495735 76.617 201 37 1 240 430 106 306 1.63e-101 305
MS.gene33103.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 5.30e-17 82.0
MS.gene33103.t1 MTR_6g080420 37.963 432 254 6 5 428 89 514 5.19e-97 301
MS.gene33103.t1 MTR_8g106700 37.963 432 258 6 4 429 43 470 8.11e-94 291
MS.gene33103.t1 MTR_8g106700 37.963 432 258 6 4 429 49 476 9.12e-94 291
MS.gene33103.t1 MTR_8g106700 37.963 432 258 6 4 429 70 497 2.46e-93 291
MS.gene33103.t1 MTR_8g087950 36.028 433 268 6 7 433 275 704 1.06e-91 292
MS.gene33103.t1 MTR_8g087950 36.028 433 268 6 7 433 348 777 5.28e-91 292
MS.gene33103.t1 MTR_1g101880 87.013 154 20 0 1 154 1 154 8.65e-90 274
MS.gene33103.t1 MTR_4g054970 57.025 242 75 4 193 431 50 265 3.11e-81 252
MS.gene33103.t1 MTR_4g054970 75.000 44 11 0 1 44 1 44 7.74e-13 68.9
MS.gene33103.t1 MTR_1g024165 81.429 140 26 0 6 145 10 149 1.42e-78 241
MS.gene33103.t1 MTR_8g014950 76.471 102 24 0 3 104 4 105 1.74e-47 159
MS.gene33103.t1 MTR_7g094460 30.365 438 245 14 3 429 59 447 1.36e-45 164
MS.gene33103.t1 MTR_7g098190 53.892 167 51 5 56 220 10 152 8.88e-43 149
MS.gene33103.t1 MTR_2g021300 29.613 439 247 12 3 429 46 434 4.95e-42 154
MS.gene33103.t1 MTR_3g076660 29.955 444 250 15 3 429 88 487 7.17e-41 152
MS.gene33103.t1 MTR_8g014960 64.634 82 29 0 213 294 2 83 2.31e-28 110
MS.gene33103.t1 MTR_3g097250 26.471 272 143 9 9 272 85 307 1.53e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33103.t1 AT5G60390 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene33103.t1 AT5G60390 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene33103.t1 AT5G60390 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene33103.t1 AT1G07920 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene33103.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene33103.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene33103.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene33103.t1 AT1G07940 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene33103.t1 AT1G07930 95.078 447 21 1 1 447 1 446 0.0 881
MS.gene33103.t1 AT1G07930 98.824 255 3 0 1 255 1 255 0.0 530
MS.gene33103.t1 AT1G07930 86.325 117 15 1 331 447 254 369 4.46e-64 211
MS.gene33103.t1 AT1G18070 37.647 425 257 5 5 424 99 520 3.35e-94 294
MS.gene33103.t1 AT1G18070 37.647 425 257 5 5 424 99 520 3.35e-94 294
MS.gene33103.t1 AT1G18070 36.927 436 256 6 5 424 99 531 3.41e-91 286
MS.gene33103.t1 AT5G10630 35.765 425 265 5 7 426 239 660 1.02e-90 289
MS.gene33103.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.05e-90 289
MS.gene33103.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.05e-90 289
MS.gene33103.t1 AT5G10630 35.765 425 265 5 7 426 310 731 5.91e-90 289
MS.gene33103.t1 AT5G10630 35.765 425 265 5 7 426 315 736 6.36e-90 289
MS.gene33103.t1 AT1G35550 78.641 103 22 0 335 437 1 103 1.45e-53 174
MS.gene33103.t1 AT4G02930 30.296 439 245 15 3 429 63 452 7.48e-44 160
MS.gene33103.t1 AT4G20360 30.137 438 257 10 3 429 75 474 9.49e-44 160
MS.gene33103.t1 AT4G20360 30.137 438 257 10 3 429 75 474 9.49e-44 160
MS.gene33103.t1 AT2G31060 25.000 264 160 8 9 263 61 295 3.08e-12 69.3
MS.gene33103.t1 AT5G08650 26.667 270 145 10 9 272 88 310 2.86e-11 65.9
MS.gene33103.t1 AT5G08650 26.667 270 145 10 9 272 88 310 2.92e-11 66.2
MS.gene33103.t1 AT2G31060 24.615 260 162 7 9 263 61 291 3.76e-11 65.9

Find 135 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCATTCTTCAAGAATT+TGG 0.066665 1.1:-7289391 None:intergenic
GTCTACAAGATTGGAGGAAT+TGG 0.281818 1.1:+7288976 MS.gene33103:CDS
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 1.1:+7288568 MS.gene33103:CDS
TTCATTAAGAACATGATTAC+TGG 0.308905 1.1:+7288451 MS.gene33103:CDS
TGTTAAGAACGTTGCTGTTA+AGG 0.312399 1.1:+7289152 MS.gene33103:CDS
GCCTCTTAGGCTCGTTGATT+TGG 0.315296 1.1:-7288918 None:intergenic
ACCAGTGGTGGTTGACTTCC+CGG 0.329357 1.1:-7288212 None:intergenic
CACATTAACATTGTTGTCAT+TGG 0.329838 1.1:+7288178 MS.gene33103:CDS
TCACCATTCTTCAAGAATTT+GGG 0.331757 1.1:-7289390 None:intergenic
ATAGCCAACCTTCTTCAAAT+AGG 0.332380 1.1:-7288782 None:intergenic
ACTAAGATTGACAGGCGTTC+TGG 0.356033 1.1:+7289348 MS.gene33103:CDS
GAGGTGTGGCAGTCAAGAAC+AGG 0.357372 1.1:-7289294 None:intergenic
GCTCTCACTGAGGCTCTTCC+CGG 0.361996 1.1:+7289111 MS.gene33103:CDS
ATTCCATTTGTTCCCATCTC+TGG 0.368209 1.1:+7288817 MS.gene33103:CDS
AAGTTAGCGGCCTCCTTGGC+AGG 0.394061 1.1:-7289216 None:intergenic
CTGATCATTGATTCCACTAC+TGG 0.405045 1.1:+7288499 MS.gene33103:CDS
CTCCTTGGCAGGGTCATCCT+TGG 0.412873 1.1:-7289205 None:intergenic
ATGAATCACCCTGGCCAGAT+TGG 0.417716 1.1:+7289258 MS.gene33103:CDS
GCAAAAGTGACAACCATTCC+AGG 0.418006 1.1:-7289039 None:intergenic
CCTGTGGGGCGTGTCGAGAC+TGG 0.431830 1.1:+7289006 MS.gene33103:CDS
GGCTTGTCTGATGGCCTCTT+AGG 0.432559 1.1:-7288931 None:intergenic
CACCCTGGCCAGATTGGAAA+TGG 0.432985 1.1:+7289264 MS.gene33103:CDS
GCCCCTCCGACTACCACTTC+AGG 0.433104 1.1:+7288951 MS.gene33103:CDS
AGGACAAATGGGTAAGGAAA+AGG 0.440646 1.1:+7288153 None:intergenic
GGGCATAGCCATTTCCAATC+TGG 0.448022 1.1:-7289272 None:intergenic
AAACCAGAGATGGGAACAAA+TGG 0.449170 1.1:-7288820 None:intergenic
CTGACCATCCTTTGAAATAC+CGG 0.450328 1.1:-7288533 None:intergenic
GTCATTGGCCATGTCGACTC+CGG 0.454084 1.1:+7288193 MS.gene33103:CDS
ACTTCAGTTGTCAGTCCAGT+AGG 0.456008 1.1:-7289063 None:intergenic
CTTCAGGATGTCTACAAGAT+TGG 0.458119 1.1:+7288967 MS.gene33103:CDS
AGCGTTCATTCAAGTATGCT+TGG 0.461530 1.1:+7288311 MS.gene33103:CDS
AGTCTCAACCACCATGGGCT+TGG 0.462350 1.1:-7289439 None:intergenic
AGGAATTGGGACTGTGCCTG+TGG 0.463901 1.1:+7288990 MS.gene33103:CDS
TCTACAAGATTGGAGGAATT+GGG 0.467601 1.1:+7288977 MS.gene33103:CDS
ACCAAATCAACGAGCCTAAG+AGG 0.467614 1.1:+7288917 MS.gene33103:CDS
CTCAACCACCATGGGCTTGG+TGG 0.468734 1.1:-7289436 None:intergenic
TAGCCATTTCCAATCTGGCC+AGG 0.474048 1.1:-7289267 None:intergenic
TGCACTGTCATTGATGCCCC+TGG 0.477178 1.1:+7288418 MS.gene33103:CDS
TTAATGAAATCCCTGTGTCC+AGG 0.479234 1.1:-7288436 None:intergenic
TACCTACCCTTCGAGTACTT+TGG 0.480160 1.1:-7288733 None:intergenic
GCGTTCATTCAAGTATGCTT+GGG 0.487854 1.1:+7288312 MS.gene33103:CDS
TCATCCTATTTGAAGAAGGT+TGG 0.491235 1.1:+7288778 MS.gene33103:CDS
AGCAAATTTGACAGCAATGT+GGG 0.494938 1.1:-7289316 None:intergenic
AGTAAAGTTAGCGGCCTCCT+TGG 0.495389 1.1:-7289220 None:intergenic
AGTCGGAGGGGCTTGTCTGA+TGG 0.496444 1.1:-7288940 None:intergenic
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 1.1:-7288830 None:intergenic
GGAATTGGGACTGTGCCTGT+GGG 0.501531 1.1:+7288991 MS.gene33103:CDS
AGTTTCATCCTATTTGAAGA+AGG 0.501588 1.1:+7288774 MS.gene33103:CDS
ATCATTGATTCCACTACTGG+TGG 0.502099 1.1:+7288502 MS.gene33103:CDS
TACAAATCTTGACTGGTACA+AGG 0.502738 1.1:+7288870 MS.gene33103:CDS
AGCTTGTTACTAAGATTGAC+AGG 0.504274 1.1:+7289340 MS.gene33103:CDS
CTTCAGTTGTCAGTCCAGTA+GGG 0.506099 1.1:-7289062 None:intergenic
ATTAAATCCCACATTGTCAC+CGG 0.519224 1.1:-7289130 None:intergenic
TCCGGGAAGTCAACCACCAC+TGG 0.520912 1.1:+7288211 MS.gene33103:CDS
AGGGTCATCCTTGGAGTTTG+AGG 0.522734 1.1:-7289196 None:intergenic
CAGGATGTCTACAAGATTGG+AGG 0.523217 1.1:+7288970 MS.gene33103:CDS
TCATTGGCCATGTCGACTCC+GGG 0.523741 1.1:+7288194 MS.gene33103:CDS
TAATGAAATCCCTGTGTCCA+GGG 0.528272 1.1:-7288435 None:intergenic
GAGCCCAAATTCTTGAAGAA+TGG 0.528480 1.1:+7289387 MS.gene33103:CDS
TTCTCTGAGTATCCTCCACT+TGG 0.530256 1.1:+7289462 MS.gene33103:CDS
TATCAAGGCTGTGGAGAAGA+AGG 0.530959 1.1:+7289530 MS.gene33103:CDS
CTCAAAGCTGAACGTGAAAG+AGG 0.531334 1.1:+7288346 MS.gene33103:CDS
CATTGATGCCCCTGGACACA+GGG 0.535845 1.1:+7288426 MS.gene33103:CDS
TCATTGATGCCCCTGGACAC+AGG 0.539611 1.1:+7288425 MS.gene33103:CDS
TGTGGCTGTTGGTGTTATCA+AGG 0.541484 1.1:+7289515 MS.gene33103:CDS
CTTCGAGTACTTTGGTGTAG+TGG 0.545264 1.1:-7288725 None:intergenic
CACTTGATCTACAAGCTTGG+AGG 0.545798 1.1:+7288235 MS.gene33103:CDS
GAGAAAGTCTCAACCACCAT+GGG 0.549740 1.1:-7289444 None:intergenic
GATTGACAGGCGTTCTGGAA+AGG 0.550491 1.1:+7289353 MS.gene33103:CDS
GGCTTCAAAACCACCAGTAG+TGG 0.551737 1.1:-7288512 None:intergenic
GGCTCTTCCCGGTGACAATG+TGG 0.552654 1.1:+7289122 MS.gene33103:CDS
GGTCACTTGATCTACAAGCT+TGG 0.555547 1.1:+7288232 MS.gene33103:CDS
CCAGTCTCGACACGCCCCAC+AGG 0.557031 1.1:-7289006 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.557624 1.1:-7289435 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 1.1:-7288558 None:intergenic
AGGTGTGGCAGTCAAGAACA+GGG 0.559985 1.1:-7289293 None:intergenic
CACTTGAGAAGTAAAGTTAG+CGG 0.560708 1.1:-7289229 None:intergenic
TTCTTGAAGAATGGTGATGC+TGG 0.561159 1.1:+7289396 MS.gene33103:CDS
TTGACAAGCGTGTGATTGAG+AGG 0.564366 1.1:+7288260 MS.gene33103:CDS
ACAAATCTTGACTGGTACAA+GGG 0.566035 1.1:+7288871 MS.gene33103:CDS
TTTGGTCAAGAGCCTCAAGA+AGG 0.570297 1.1:-7288900 None:intergenic
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 1.1:-7288557 None:intergenic
GAAGCCGGTATTTCAAAGGA+TGG 0.572749 1.1:+7288529 MS.gene33103:CDS
TTGACTTCCCGGAGTCGACA+TGG 0.574810 1.1:-7288201 None:intergenic
ATCCTGAAGTGGTAGTCGGA+GGG 0.576252 1.1:-7288953 None:intergenic
GAGACTGGTGTCATAAAACC+TGG 0.585699 1.1:+7289021 MS.gene33103:CDS
CAAGGGTCCTACCCTTCTTG+AGG 0.587059 1.1:+7288888 MS.gene33103:CDS
GCTCTTCCCGGTGACAATGT+GGG 0.588610 1.1:+7289123 MS.gene33103:CDS
GCATATCCCTGACAGCAAAA+CGG 0.593078 1.1:-7289485 None:intergenic
TGTTGGTGTTATCAAGGCTG+TGG 0.597147 1.1:+7289521 MS.gene33103:CDS
TAGGTATGATGAAATTGTGA+AGG 0.599770 1.1:+7288750 MS.gene33103:CDS
CACTACACCAAAGTACTCGA+AGG 0.602464 1.1:+7288726 MS.gene33103:CDS
ATGCGTCAAACTGTGGCTGT+TGG 0.604242 1.1:+7289504 MS.gene33103:CDS
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 1.1:-7288829 None:intergenic
TCCTGAAGTGGTAGTCGGAG+GGG 0.608492 1.1:-7288952 None:intergenic
AGCGCTCTACAAATCTTGAC+TGG 0.610562 1.1:+7288863 MS.gene33103:CDS
GATGATTCCCACCAAGCCCA+TGG 0.611182 1.1:+7289428 MS.gene33103:CDS
GAATTGGGACTGTGCCTGTG+GGG 0.615616 1.1:+7288992 MS.gene33103:CDS
GACAACTGAAGTCAAGTCTG+TGG 0.617234 1.1:+7289074 MS.gene33103:CDS
CTCCAAGGATGACCCTGCCA+AGG 0.619064 1.1:+7289203 MS.gene33103:CDS
TCAAGAGCCTCAAGAAGGGT+AGG 0.620041 1.1:-7288895 None:intergenic
TCACACCAAGAGTGAAAGCA+AGG 0.621193 1.1:-7288573 None:intergenic
ATCTTGTAGACATCCTGAAG+TGG 0.621388 1.1:-7288964 None:intergenic
TTCAGTTGTCAGTCCAGTAG+GGG 0.622733 1.1:-7289061 None:intergenic
AGCCATTTCCAATCTGGCCA+GGG 0.623271 1.1:-7289266 None:intergenic
ACAGCAAAACGGCCAAGTGG+AGG 0.624787 1.1:-7289474 None:intergenic
TGGTGTCATAAAACCTGGAA+TGG 0.625384 1.1:+7289026 MS.gene33103:CDS
AGAGAAAGTCTCAACCACCA+TGG 0.628507 1.1:-7289445 None:intergenic
AATGATTTGTTGCTGCAACA+AGG 0.628678 1.1:+7288600 MS.gene33103:CDS
TTCTGGAAAGGAGATTGAGA+AGG 0.629354 1.1:+7289365 MS.gene33103:CDS
TTATGTTGCCTCAAACTCCA+AGG 0.633897 1.1:+7289188 MS.gene33103:CDS
AGTTAGCGGCCTCCTTGGCA+GGG 0.634693 1.1:-7289215 None:intergenic
CAAGGATGACCCTGCCAAGG+AGG 0.636072 1.1:+7289206 MS.gene33103:CDS
CATCCTGAAGTGGTAGTCGG+AGG 0.637451 1.1:-7288954 None:intergenic
AGACATCCTGAAGTGGTAGT+CGG 0.638051 1.1:-7288957 None:intergenic
CAGCAAATTTGACAGCAATG+TGG 0.639349 1.1:-7289317 None:intergenic
TTGGTCAAGAGCCTCAAGAA+GGG 0.643393 1.1:-7288899 None:intergenic
TGACAGCAATGTGGGAGGTG+TGG 0.647495 1.1:-7289308 None:intergenic
CACCAAAGTACTCGAAGGGT+AGG 0.649681 1.1:+7288731 MS.gene33103:CDS
AATGAAATCCCTGTGTCCAG+GGG 0.656838 1.1:-7288434 None:intergenic
GCTGTTAAGGATCTCAAGCG+TGG 0.663761 1.1:+7289165 MS.gene33103:CDS
TTAAATCCCACATTGTCACC+GGG 0.665158 1.1:-7289129 None:intergenic
ACTACACCAAAGTACTCGAA+GGG 0.668068 1.1:+7288727 MS.gene33103:CDS
CAGGGATATGCGTCAAACTG+TGG 0.672188 1.1:+7289497 MS.gene33103:CDS
GAGAAGAAGGATCCCAGCGG+AGG 0.673598 1.1:+7289543 MS.gene33103:CDS
AAATTTGACAGCAATGTGGG+AGG 0.676474 1.1:-7289313 None:intergenic
CTGACAGCAAAACGGCCAAG+TGG 0.682401 1.1:-7289477 None:intergenic
CTTGTAGATCAAGTGACCAG+TGG 0.682705 1.1:-7288227 None:intergenic
GTGATCATCATGAATCACCC+TGG 0.684375 1.1:+7289249 MS.gene33103:CDS
GTAGATCAAGTGACCAGTGG+TGG 0.699002 1.1:-7288224 None:intergenic
TCACAATTGACATTGCTCTG+TGG 0.708352 1.1:+7288371 MS.gene33103:CDS
GGTGTGGCAGTCAAGAACAG+GGG 0.711459 1.1:-7289292 None:intergenic
GATTCCCACCAAGCCCATGG+TGG 0.723849 1.1:+7289431 MS.gene33103:CDS
GCATCATGAAGCTCTCACTG+AGG 0.742195 1.1:+7289101 MS.gene33103:CDS
GTGGAGAAGAAGGATCCCAG+CGG 0.769725 1.1:+7289540 MS.gene33103:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATTACAATAATAATCAG+AGG - chr1.1:7288655-7288674 None:intergenic 20.0%
! TTCATTAAGAACATGATTAC+TGG + chr1.1:7288451-7288470 MS.gene33103:CDS 25.0%
AGTTTCATCCTATTTGAAGA+AGG + chr1.1:7288774-7288793 MS.gene33103:CDS 30.0%
ATCACCATTCTTCAAGAATT+TGG - chr1.1:7289394-7289413 None:intergenic 30.0%
CACATTAACATTGTTGTCAT+TGG + chr1.1:7288178-7288197 MS.gene33103:CDS 30.0%
TAGGTATGATGAAATTGTGA+AGG + chr1.1:7288750-7288769 MS.gene33103:CDS 30.0%
TCACCATTCTTCAAGAATTT+GGG - chr1.1:7289393-7289412 None:intergenic 30.0%
! GAACAAATGGAATTTTGTCT+GGG - chr1.1:7288810-7288829 None:intergenic 30.0%
!! TTTTTGCTATCTTGAACAGA+TGG + chr1.1:7288699-7288718 MS.gene33103:intron 30.0%
ACAAATCTTGACTGGTACAA+GGG + chr1.1:7288871-7288890 MS.gene33103:CDS 35.0%
AGCAAATTTGACAGCAATGT+GGG - chr1.1:7289319-7289338 None:intergenic 35.0%
ATAGCCAACCTTCTTCAAAT+AGG - chr1.1:7288785-7288804 None:intergenic 35.0%
ATTAAATCCCACATTGTCAC+CGG - chr1.1:7289133-7289152 None:intergenic 35.0%
CACTTGAGAAGTAAAGTTAG+CGG - chr1.1:7289232-7289251 None:intergenic 35.0%
TACAAATCTTGACTGGTACA+AGG + chr1.1:7288870-7288889 MS.gene33103:CDS 35.0%
TCATCCTATTTGAAGAAGGT+TGG + chr1.1:7288778-7288797 MS.gene33103:CDS 35.0%
TCTACAAGATTGGAGGAATT+GGG + chr1.1:7288977-7288996 MS.gene33103:CDS 35.0%
! GGAACAAATGGAATTTTGTC+TGG - chr1.1:7288811-7288830 None:intergenic 35.0%
! TGTTAAGAACGTTGCTGTTA+AGG + chr1.1:7289152-7289171 MS.gene33103:CDS 35.0%
!! AATGATTTGTTGCTGCAACA+AGG + chr1.1:7288600-7288619 MS.gene33103:CDS 35.0%
!! AGCTTGTTACTAAGATTGAC+AGG + chr1.1:7289340-7289359 MS.gene33103:CDS 35.0%
!!! TTTTGAAGCCGGTATTTCAA+AGG + chr1.1:7288525-7288544 MS.gene33103:CDS 35.0%
AAACCAGAGATGGGAACAAA+TGG - chr1.1:7288823-7288842 None:intergenic 40.0%
AAATTTGACAGCAATGTGGG+AGG - chr1.1:7289316-7289335 None:intergenic 40.0%
AGCGTTCATTCAAGTATGCT+TGG + chr1.1:7288311-7288330 MS.gene33103:CDS 40.0%
ATCTTGTAGACATCCTGAAG+TGG - chr1.1:7288967-7288986 None:intergenic 40.0%
ATTCCATTTGTTCCCATCTC+TGG + chr1.1:7288817-7288836 MS.gene33103:CDS 40.0%
CAGCAAATTTGACAGCAATG+TGG - chr1.1:7289320-7289339 None:intergenic 40.0%
CTTCAGGATGTCTACAAGAT+TGG + chr1.1:7288967-7288986 MS.gene33103:CDS 40.0%
GAGCCCAAATTCTTGAAGAA+TGG + chr1.1:7289387-7289406 MS.gene33103:CDS 40.0%
GCGTTCATTCAAGTATGCTT+GGG + chr1.1:7288312-7288331 MS.gene33103:CDS 40.0%
GTCTACAAGATTGGAGGAAT+TGG + chr1.1:7288976-7288995 MS.gene33103:CDS 40.0%
TAATGAAATCCCTGTGTCCA+GGG - chr1.1:7288438-7288457 None:intergenic 40.0%
TCACAATTGACATTGCTCTG+TGG + chr1.1:7288371-7288390 MS.gene33103:CDS 40.0%
TTAAATCCCACATTGTCACC+GGG - chr1.1:7289132-7289151 None:intergenic 40.0%
TTAATGAAATCCCTGTGTCC+AGG - chr1.1:7288439-7288458 None:intergenic 40.0%
TTATGTTGCCTCAAACTCCA+AGG + chr1.1:7289188-7289207 MS.gene33103:CDS 40.0%
! ACTACACCAAAGTACTCGAA+GGG + chr1.1:7288727-7288746 MS.gene33103:CDS 40.0%
! TTCTGGAAAGGAGATTGAGA+AGG + chr1.1:7289365-7289384 MS.gene33103:CDS 40.0%
! TTCTTGAAGAATGGTGATGC+TGG + chr1.1:7289396-7289415 MS.gene33103:CDS 40.0%
!! ATAATCAGAGGCACCTTCAA+AGG - chr1.1:7288643-7288662 None:intergenic 40.0%
!! ATCATTGATTCCACTACTGG+TGG + chr1.1:7288502-7288521 MS.gene33103:CDS 40.0%
!! CTGACCATCCTTTGAAATAC+CGG - chr1.1:7288536-7288555 None:intergenic 40.0%
!! CTGATCATTGATTCCACTAC+TGG + chr1.1:7288499-7288518 MS.gene33103:CDS 40.0%
!! GTTTTATTAAGTCCTCCGCT+GGG - chr1.1:7289558-7289577 None:intergenic 40.0%
!! TAATCAGAGGCACCTTCAAA+GGG - chr1.1:7288642-7288661 None:intergenic 40.0%
!! TGAACGTTTTAGCCCTTTGA+AGG + chr1.1:7288627-7288646 MS.gene33103:intron 40.0%
!! TGGTGTCATAAAACCTGGAA+TGG + chr1.1:7289026-7289045 MS.gene33103:CDS 40.0%
!! TGTTTTATTAAGTCCTCCGC+TGG - chr1.1:7289559-7289578 None:intergenic 40.0%
AATGAAATCCCTGTGTCCAG+GGG - chr1.1:7288437-7288456 None:intergenic 45.0%
ACCAAATCAACGAGCCTAAG+AGG + chr1.1:7288917-7288936 MS.gene33103:CDS 45.0%
ACTAAGATTGACAGGCGTTC+TGG + chr1.1:7289348-7289367 MS.gene33103:CDS 45.0%
ACTTCAGTTGTCAGTCCAGT+AGG - chr1.1:7289066-7289085 None:intergenic 45.0%
AGACATCCTGAAGTGGTAGT+CGG - chr1.1:7288960-7288979 None:intergenic 45.0%
AGAGAAAGTCTCAACCACCA+TGG - chr1.1:7289448-7289467 None:intergenic 45.0%
AGCGCTCTACAAATCTTGAC+TGG + chr1.1:7288863-7288882 MS.gene33103:CDS 45.0%
ATCTCCCTCAAAACCAGAGA+TGG - chr1.1:7288833-7288852 None:intergenic 45.0%
CACTTGATCTACAAGCTTGG+AGG + chr1.1:7288235-7288254 MS.gene33103:CDS 45.0%
CAGGATGTCTACAAGATTGG+AGG + chr1.1:7288970-7288989 MS.gene33103:CDS 45.0%
CTCAAAGCTGAACGTGAAAG+AGG + chr1.1:7288346-7288365 MS.gene33103:CDS 45.0%
CTTCAGTTGTCAGTCCAGTA+GGG - chr1.1:7289065-7289084 None:intergenic 45.0%
CTTGTAGATCAAGTGACCAG+TGG - chr1.1:7288230-7288249 None:intergenic 45.0%
GAAGCCGGTATTTCAAAGGA+TGG + chr1.1:7288529-7288548 MS.gene33103:CDS 45.0%
GACAACTGAAGTCAAGTCTG+TGG + chr1.1:7289074-7289093 MS.gene33103:CDS 45.0%
GAGAAAGTCTCAACCACCAT+GGG - chr1.1:7289447-7289466 None:intergenic 45.0%
GCAAAAGTGACAACCATTCC+AGG - chr1.1:7289042-7289061 None:intergenic 45.0%
GCATATCCCTGACAGCAAAA+CGG - chr1.1:7289488-7289507 None:intergenic 45.0%
GGTCACTTGATCTACAAGCT+TGG + chr1.1:7288232-7288251 MS.gene33103:CDS 45.0%
GTGATCATCATGAATCACCC+TGG + chr1.1:7289249-7289268 MS.gene33103:CDS 45.0%
TACCTACCCTTCGAGTACTT+TGG - chr1.1:7288736-7288755 None:intergenic 45.0%
TATCAAGGCTGTGGAGAAGA+AGG + chr1.1:7289530-7289549 MS.gene33103:CDS 45.0%
TCACACCAAGAGTGAAAGCA+AGG - chr1.1:7288576-7288595 None:intergenic 45.0%
TCTCCCTCAAAACCAGAGAT+GGG - chr1.1:7288832-7288851 None:intergenic 45.0%
TTCAGTTGTCAGTCCAGTAG+GGG - chr1.1:7289064-7289083 None:intergenic 45.0%
TTCTCTGAGTATCCTCCACT+TGG + chr1.1:7289462-7289481 MS.gene33103:CDS 45.0%
TTGACAAGCGTGTGATTGAG+AGG + chr1.1:7288260-7288279 MS.gene33103:CDS 45.0%
TTGGTCAAGAGCCTCAAGAA+GGG - chr1.1:7288902-7288921 None:intergenic 45.0%
TTTGGTCAAGAGCCTCAAGA+AGG - chr1.1:7288903-7288922 None:intergenic 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG - chr1.1:7288561-7288580 None:intergenic 45.0%
! CACTACACCAAAGTACTCGA+AGG + chr1.1:7288726-7288745 MS.gene33103:CDS 45.0%
! CTTCGAGTACTTTGGTGTAG+TGG - chr1.1:7288728-7288747 None:intergenic 45.0%
!! GAGACTGGTGTCATAAAACC+TGG + chr1.1:7289021-7289040 MS.gene33103:CDS 45.0%
!! TGTGGCTGTTGGTGTTATCA+AGG + chr1.1:7289515-7289534 MS.gene33103:CDS 45.0%
!! TGTTGGTGTTATCAAGGCTG+TGG + chr1.1:7289521-7289540 MS.gene33103:CDS 45.0%
!!! ACTACTGGTGGTTTTGAAGC+CGG + chr1.1:7288514-7288533 MS.gene33103:CDS 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG + chr1.1:7288826-7288845 MS.gene33103:CDS 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG + chr1.1:7288825-7288844 MS.gene33103:CDS 45.0%
AGCCATTTCCAATCTGGCCA+GGG - chr1.1:7289269-7289288 None:intergenic 50.0%
AGGGTCATCCTTGGAGTTTG+AGG - chr1.1:7289199-7289218 None:intergenic 50.0%
AGGTGTGGCAGTCAAGAACA+GGG - chr1.1:7289296-7289315 None:intergenic 50.0%
AGTAAAGTTAGCGGCCTCCT+TGG - chr1.1:7289223-7289242 None:intergenic 50.0%
ATCCTGAAGTGGTAGTCGGA+GGG - chr1.1:7288956-7288975 None:intergenic 50.0%
ATGAATCACCCTGGCCAGAT+TGG + chr1.1:7289258-7289277 MS.gene33103:CDS 50.0%
ATGCGTCAAACTGTGGCTGT+TGG + chr1.1:7289504-7289523 MS.gene33103:CDS 50.0%
CAGGGATATGCGTCAAACTG+TGG + chr1.1:7289497-7289516 MS.gene33103:CDS 50.0%
GCATCATGAAGCTCTCACTG+AGG + chr1.1:7289101-7289120 MS.gene33103:CDS 50.0%
GCTCTCCTTGCTTTCACTCT+TGG + chr1.1:7288568-7288587 MS.gene33103:CDS 50.0%
GCTGTTAAGGATCTCAAGCG+TGG + chr1.1:7289165-7289184 MS.gene33103:CDS 50.0%
GGCTTCAAAACCACCAGTAG+TGG - chr1.1:7288515-7288534 None:intergenic 50.0%
GGGCATAGCCATTTCCAATC+TGG - chr1.1:7289275-7289294 None:intergenic 50.0%
GTAGATCAAGTGACCAGTGG+TGG - chr1.1:7288227-7288246 None:intergenic 50.0%
TAGCCATTTCCAATCTGGCC+AGG - chr1.1:7289270-7289289 None:intergenic 50.0%
TCAAGAGCCTCAAGAAGGGT+AGG - chr1.1:7288898-7288917 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG - chr1.1:7288560-7288579 None:intergenic 50.0%
! CACCAAAGTACTCGAAGGGT+AGG + chr1.1:7288731-7288750 MS.gene33103:CDS 50.0%
! GCCTCTTAGGCTCGTTGATT+TGG - chr1.1:7288921-7288940 None:intergenic 50.0%
!! ACTTGGCCGTTTTGCTGTCA+GGG + chr1.1:7289479-7289498 MS.gene33103:CDS 50.0%
!! GATTGACAGGCGTTCTGGAA+AGG + chr1.1:7289353-7289372 MS.gene33103:CDS 50.0%
!!! GTTGTCACTTTTGCCCCTAC+TGG + chr1.1:7289048-7289067 MS.gene33103:CDS 50.0%
ACAGCAAAACGGCCAAGTGG+AGG - chr1.1:7289477-7289496 None:intergenic 55.0%
AGGAATTGGGACTGTGCCTG+TGG + chr1.1:7288990-7289009 MS.gene33103:CDS 55.0%
AGTCTCAACCACCATGGGCT+TGG - chr1.1:7289442-7289461 None:intergenic 55.0%
CAAGGGTCCTACCCTTCTTG+AGG + chr1.1:7288888-7288907 MS.gene33103:CDS 55.0%
CACCCTGGCCAGATTGGAAA+TGG + chr1.1:7289264-7289283 MS.gene33103:CDS 55.0%
CATCCTGAAGTGGTAGTCGG+AGG - chr1.1:7288957-7288976 None:intergenic 55.0%
CATTGATGCCCCTGGACACA+GGG + chr1.1:7288426-7288445 MS.gene33103:CDS 55.0%
CTGACAGCAAAACGGCCAAG+TGG - chr1.1:7289480-7289499 None:intergenic 55.0%
GAATTGGGACTGTGCCTGTG+GGG + chr1.1:7288992-7289011 MS.gene33103:CDS 55.0%
GAGGTGTGGCAGTCAAGAAC+AGG - chr1.1:7289297-7289316 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG + chr1.1:7289428-7289447 MS.gene33103:CDS 55.0%
GCTCTTCCCGGTGACAATGT+GGG + chr1.1:7289123-7289142 MS.gene33103:CDS 55.0%
GGAATTGGGACTGTGCCTGT+GGG + chr1.1:7288991-7289010 MS.gene33103:CDS 55.0%
GGCTTGTCTGATGGCCTCTT+AGG - chr1.1:7288934-7288953 None:intergenic 55.0%
GGTGTGGCAGTCAAGAACAG+GGG - chr1.1:7289295-7289314 None:intergenic 55.0%
GTGGAGAAGAAGGATCCCAG+CGG + chr1.1:7289540-7289559 MS.gene33103:CDS 55.0%
TCATTGATGCCCCTGGACAC+AGG + chr1.1:7288425-7288444 MS.gene33103:CDS 55.0%
TCCTGAAGTGGTAGTCGGAG+GGG - chr1.1:7288955-7288974 None:intergenic 55.0%
TGACAGCAATGTGGGAGGTG+TGG - chr1.1:7289311-7289330 None:intergenic 55.0%
TGCACTGTCATTGATGCCCC+TGG + chr1.1:7288418-7288437 MS.gene33103:CDS 55.0%
TTGACTTCCCGGAGTCGACA+TGG - chr1.1:7288204-7288223 None:intergenic 55.0%
! ACCAGTGGTGGTTGACTTCC+CGG - chr1.1:7288215-7288234 None:intergenic 55.0%
! TCAACCACCATGGGCTTGGT+GGG - chr1.1:7289438-7289457 None:intergenic 55.0%
!! CACTTGGCCGTTTTGCTGTC+AGG + chr1.1:7289478-7289497 MS.gene33103:CDS 55.0%
!! GTCATTGGCCATGTCGACTC+CGG + chr1.1:7288193-7288212 MS.gene33103:CDS 55.0%
!! TCATTGGCCATGTCGACTCC+GGG + chr1.1:7288194-7288213 MS.gene33103:CDS 55.0%
AAGTTAGCGGCCTCCTTGGC+AGG - chr1.1:7289219-7289238 None:intergenic 60.0%
AGTCGGAGGGGCTTGTCTGA+TGG - chr1.1:7288943-7288962 None:intergenic 60.0%
AGTTAGCGGCCTCCTTGGCA+GGG - chr1.1:7289218-7289237 None:intergenic 60.0%
CAAGGATGACCCTGCCAAGG+AGG + chr1.1:7289206-7289225 MS.gene33103:CDS 60.0%
CTCAACCACCATGGGCTTGG+TGG - chr1.1:7289439-7289458 None:intergenic 60.0%
CTCCAAGGATGACCCTGCCA+AGG + chr1.1:7289203-7289222 MS.gene33103:CDS 60.0%
CTCCTTGGCAGGGTCATCCT+TGG - chr1.1:7289208-7289227 None:intergenic 60.0%
GAGAAGAAGGATCCCAGCGG+AGG + chr1.1:7289543-7289562 MS.gene33103:CDS 60.0%
GATTCCCACCAAGCCCATGG+TGG + chr1.1:7289431-7289450 MS.gene33103:CDS 60.0%
GCTCTCACTGAGGCTCTTCC+CGG + chr1.1:7289111-7289130 MS.gene33103:CDS 60.0%
GGCTCTTCCCGGTGACAATG+TGG + chr1.1:7289122-7289141 MS.gene33103:CDS 60.0%
TCCGGGAAGTCAACCACCAC+TGG + chr1.1:7288211-7288230 MS.gene33103:CDS 60.0%
GCCCCTCCGACTACCACTTC+AGG + chr1.1:7288951-7288970 MS.gene33103:CDS 65.0%
CCAGTCTCGACACGCCCCAC+AGG - chr1.1:7289009-7289028 None:intergenic 70.0%
CCTGTGGGGCGTGTCGAGAC+TGG + chr1.1:7289006-7289025 MS.gene33103:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 7288160 7289602 7288160 ID=MS.gene33103
chr1.1 mRNA 7288160 7289602 7288160 ID=MS.gene33103.t1;Parent=MS.gene33103
chr1.1 exon 7288160 7288621 7288160 ID=MS.gene33103.t1.exon1;Parent=MS.gene33103.t1
chr1.1 CDS 7288160 7288621 7288160 ID=cds.MS.gene33103.t1;Parent=MS.gene33103.t1
chr1.1 exon 7288718 7289602 7288718 ID=MS.gene33103.t1.exon2;Parent=MS.gene33103.t1
chr1.1 CDS 7288718 7289602 7288718 ID=cds.MS.gene33103.t1;Parent=MS.gene33103.t1
Gene Sequence

>MS.gene33103

ATGGGTAAGGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCCGGGAAGTCAACCACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTGCTCGACAAGCTCAAAGCTGAACGTGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACTACTAAGTACTACTGCACTGTCATTGATGCCCCTGGACACAGGGATTTCATTAAGAACATGATTACTGGAACATCTCAAGCTGATTGCGCTGTTCTGATCATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATTTCAAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATTTGTTGCTGCAACAAGGTATTTGAACGTTTTAGCCCTTTGAAGGTGCCTCTGATTATTATTGTAATTACTTTATTTATACAAGTTCTTATTGTTTTTTGCTATCTTGAACAGATGGATGCCACTACACCAAAGTACTCGAAGGGTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTATAACCCAGACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAATCTTGACTGGTACAAGGGTCCTACCCTTCTTGAGGCTCTTGACCAAATCAACGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGACTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGGACTGTGCCTGTGGGGCGTGTCGAGACTGGTGTCATAAAACCTGGAATGGTTGTCACTTTTGCCCCTACTGGACTGACAACTGAAGTCAAGTCTGTGGAAATGCATCATGAAGCTCTCACTGAGGCTCTTCCCGGTGACAATGTGGGATTTAATGTTAAGAACGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCCGCTAACTTTACTTCTCAAGTGATCATCATGAATCACCCTGGCCAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAATTTGCTGAGCTTGTTACTAAGATTGACAGGCGTTCTGGAAAGGAGATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCAAGCCCATGGTGGTTGAGACTTTCTCTGAGTATCCTCCACTTGGCCGTTTTGCTGTCAGGGATATGCGTCAAACTGTGGCTGTTGGTGTTATCAAGGCTGTGGAGAAGAAGGATCCCAGCGGAGGACTTAATAAAACAAAGTCAGCATTGAAGAAGAAGTGA

Protein sequence

>MS.gene33103.t1

MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGGLNKTKSALKKK