AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47051


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47051.t1 MTR_6g021800 100.000 447 0 0 1 447 1 447 0.0 918
MS.gene47051.t1 MTR_6g021805 100.000 447 0 0 1 447 1 447 0.0 918
MS.gene47051.t1 MTR_1g495705 96.652 448 14 1 1 447 1 448 0.0 895
MS.gene47051.t1 MTR_1g095650 96.652 448 14 1 1 447 1 448 0.0 895
MS.gene47051.t1 MTR_1g095703 96.429 448 15 1 1 447 1 448 0.0 895
MS.gene47051.t1 MTR_4g014810 95.302 447 21 0 1 447 1 447 0.0 891
MS.gene47051.t1 MTR_1g013680 95.227 440 18 1 1 437 1 440 0.0 865
MS.gene47051.t1 MTR_1g085410 81.336 434 81 0 1 434 1 434 0.0 739
MS.gene47051.t1 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 726
MS.gene47051.t1 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 724
MS.gene47051.t1 MTR_1g024175 78.802 434 92 0 1 434 1 434 0.0 724
MS.gene47051.t1 MTR_8g014590 77.951 449 96 2 1 446 1 449 0.0 713
MS.gene47051.t1 MTR_1g095650 95.965 347 13 1 102 447 1 347 0.0 688
MS.gene47051.t1 MTR_2g082730 70.682 440 112 2 1 438 1 425 0.0 639
MS.gene47051.t1 MTR_5g037350 66.383 470 121 1 3 435 13 482 0.0 629
MS.gene47051.t1 MTR_1g089520 69.406 438 116 3 4 440 5 425 0.0 623
MS.gene47051.t1 MTR_2g082665 65.682 440 108 2 1 438 1 399 0.0 581
MS.gene47051.t1 MTR_2g037420 63.053 452 121 4 1 447 1 411 0.0 558
MS.gene47051.t1 MTR_2g080210 64.368 435 119 4 1 432 1 402 0.0 549
MS.gene47051.t1 MTR_8g013910 63.029 449 131 5 1 433 1 430 0.0 546
MS.gene47051.t1 MTR_8g008740 78.154 325 70 1 1 324 1 325 0.0 538
MS.gene47051.t1 MTR_1g112460 64.094 298 65 4 155 446 1 262 3.93e-124 362
MS.gene47051.t1 MTR_1g495735 74.129 201 42 1 240 430 106 306 3.35e-99 299
MS.gene47051.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 4.80e-17 82.0
MS.gene47051.t1 MTR_6g080420 37.731 432 255 6 5 428 89 514 1.21e-96 300
MS.gene47051.t1 MTR_8g106700 37.731 432 259 6 4 429 49 476 1.45e-93 291
MS.gene47051.t1 MTR_8g106700 37.731 432 259 6 4 429 43 470 2.18e-93 290
MS.gene47051.t1 MTR_8g106700 37.731 432 259 6 4 429 70 497 4.03e-93 290
MS.gene47051.t1 MTR_8g087950 35.566 433 270 6 7 433 275 704 2.05e-90 289
MS.gene47051.t1 MTR_8g087950 35.566 433 270 6 7 433 348 777 1.09e-89 289
MS.gene47051.t1 MTR_1g101880 86.364 154 21 0 1 154 1 154 1.19e-89 273
MS.gene47051.t1 MTR_4g054970 55.372 242 79 4 193 431 50 265 2.03e-79 248
MS.gene47051.t1 MTR_4g054970 77.273 44 10 0 1 44 1 44 4.58e-13 69.7
MS.gene47051.t1 MTR_1g024165 81.884 138 25 0 8 145 12 149 1.95e-78 240
MS.gene47051.t1 MTR_8g014950 75.490 102 25 0 3 104 4 105 2.57e-47 158
MS.gene47051.t1 MTR_7g094460 30.227 440 243 14 3 429 59 447 1.67e-45 164
MS.gene47051.t1 MTR_7g098190 53.892 167 51 5 56 220 10 152 1.17e-42 149
MS.gene47051.t1 MTR_3g076660 30.631 444 247 15 3 429 88 487 5.23e-42 155
MS.gene47051.t1 MTR_2g021300 29.385 439 248 12 3 429 46 434 1.09e-41 153
MS.gene47051.t1 MTR_8g014960 62.195 82 31 0 213 294 2 83 2.88e-27 107
MS.gene47051.t1 MTR_3g097250 26.103 272 144 9 9 272 85 307 2.92e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47051.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47051.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47051.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47051.t1 AT1G07920 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47051.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47051.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47051.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47051.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47051.t1 AT1G07930 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene47051.t1 AT1G07930 98.824 255 3 0 1 255 1 255 0.0 530
MS.gene47051.t1 AT1G07930 90.517 116 11 0 331 446 254 369 1.79e-68 223
MS.gene47051.t1 AT1G18070 37.412 425 258 5 5 424 99 520 6.59e-94 293
MS.gene47051.t1 AT1G18070 37.412 425 258 5 5 424 99 520 6.59e-94 293
MS.gene47051.t1 AT1G18070 36.697 436 257 6 5 424 99 531 1.04e-90 285
MS.gene47051.t1 AT5G10630 35.765 425 265 5 7 426 239 660 1.84e-90 288
MS.gene47051.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.88e-90 288
MS.gene47051.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.88e-90 288
MS.gene47051.t1 AT5G10630 35.765 425 265 5 7 426 310 731 9.81e-90 288
MS.gene47051.t1 AT5G10630 35.765 425 265 5 7 426 315 736 1.10e-89 288
MS.gene47051.t1 AT1G35550 77.885 104 23 0 335 438 1 104 5.60e-54 176
MS.gene47051.t1 AT4G20360 30.594 438 255 10 3 429 75 474 1.27e-44 162
MS.gene47051.t1 AT4G20360 30.594 438 255 10 3 429 75 474 1.27e-44 162
MS.gene47051.t1 AT4G02930 29.977 437 249 13 3 429 63 452 2.02e-44 161
MS.gene47051.t1 AT2G31060 25.000 264 160 8 9 263 61 295 1.60e-12 70.1
MS.gene47051.t1 AT2G31060 24.615 260 162 7 9 263 61 291 2.25e-11 66.6
MS.gene47051.t1 AT5G08650 27.037 270 144 10 9 272 88 310 2.46e-11 66.2
MS.gene47051.t1 AT5G08650 27.037 270 144 10 9 272 88 310 2.73e-11 66.2

Find 137 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGGTATGGTTGTGACTTT+TGG 0.190241 6.3:+15175550 MS.gene47051:CDS
CTTCTTCTTGGCAGCAGCTT+TGG 0.247525 6.3:-15176085 None:intergenic
GGGCTTGTCTGTGGGTCTCT+TGG 0.253944 6.3:-15175443 None:intergenic
GGCTTGTCTGTGGGTCTCTT+GGG 0.287757 6.3:-15175442 None:intergenic
GGTGTGAGATCACTTCTTCT+TGG 0.342859 6.3:-15176097 None:intergenic
GCTCTCACTGAAGCTCTTCC+AGG 0.343392 6.3:+15175622 MS.gene47051:CDS
TTGCAAGATGTTTACAAGAT+TGG 0.346171 6.3:+15175478 MS.gene47051:CDS
GTCTCTTGGGCTCGTTGATC+TGG 0.347889 6.3:-15175429 None:intergenic
TTCATCAAGAACATGATTAC+TGG 0.350652 6.3:+15174962 MS.gene47051:CDS
CATATCAACATTGTCGTCAT+TGG 0.354281 6.3:+15174689 MS.gene47051:CDS
ATCACCATTCTTCAAGAACT+TGG 0.354818 6.3:-15175902 None:intergenic
GGCAGCAGCTTTGGTGACTT+TGG 0.372842 6.3:-15176076 None:intergenic
ACCTAGCCTTCGAGTACTTA+GGG 0.375441 6.3:-15175243 None:intergenic
AAGTTGGCAGCTTCCTTGGC+AGG 0.382611 6.3:-15175727 None:intergenic
GTTTACAAGATTGGTGGTAT+TGG 0.392142 6.3:+15175487 MS.gene47051:CDS
AGTGAAGTTGGCAGCTTCCT+TGG 0.410082 6.3:-15175731 None:intergenic
CATCTTGCAATGGAAGCCTT+AGG 0.410801 6.3:-15175465 None:intergenic
ACCAGATCGCCTGTCAATCT+TGG 0.419719 6.3:-15175860 None:intergenic
TTCCTTGGCAGGGTCATCCT+TGG 0.427055 6.3:-15175716 None:intergenic
GTTCCCATCTCCGGATTTGA+AGG 0.431146 6.3:+15175337 MS.gene47051:CDS
ATCTTGCAATGGAAGCCTTA+GGG 0.434928 6.3:-15175464 None:intergenic
TCTGGAAAATCAACAACAAC+TGG 0.436226 6.3:+15174722 MS.gene47051:CDS
AAGCCTTAGGGGCTTGTCTG+TGG 0.440142 6.3:-15175452 None:intergenic
ATGGGTTCTTGACAAACTTA+AGG 0.442151 6.3:+15174841 MS.gene47051:CDS
CATGTTGTCACCTTCAAATC+CGG 0.442623 6.3:-15175347 None:intergenic
ATTCCCTTCGTTCCCATCTC+CGG 0.450165 6.3:+15175328 MS.gene47051:CDS
GGCAGGGTCATCCTTGGAGT+TGG 0.452433 6.3:-15175710 None:intergenic
ATGAACCACCCTGGTCAGAT+TGG 0.454810 6.3:+15175769 MS.gene47051:CDS
GGTCTCAACCACCATGGGCT+TGG 0.458699 6.3:-15175950 None:intergenic
CTCAACCACCATGGGCTTGG+TGG 0.468734 6.3:-15175947 None:intergenic
TAAGGACTGCACAATCAGCC+TGG 0.473376 6.3:-15174991 None:intergenic
TTTGGTGACTTTGGCTCCAG+TGG 0.473646 6.3:-15176067 None:intergenic
ACCAAGATTGACAGGCGATC+TGG 0.474566 6.3:+15175859 MS.gene47051:CDS
CAAGATGTTTACAAGATTGG+TGG 0.475647 6.3:+15175481 MS.gene47051:CDS
TGCACAGTCATTGATGCTCC+TGG 0.479590 6.3:+15174929 MS.gene47051:CDS
AGCCTTAGGGGCTTGTCTGT+GGG 0.482400 6.3:-15175451 None:intergenic
CTTAAGGCTGAGCGTGAAAG+AGG 0.490014 6.3:+15174857 MS.gene47051:CDS
GTCATTGGACATGTCGACTC+TGG 0.490675 6.3:+15174704 MS.gene47051:CDS
GTCACCTTCAAATCCGGAGA+TGG 0.495769 6.3:-15175341 None:intergenic
TCATCATACTTGAAGAAGGT+TGG 0.496066 6.3:+15175289 MS.gene47051:CDS
TCCAAAAGTCACAACCATAC+CGG 0.497778 6.3:-15175551 None:intergenic
CATCAAGGCTGTGGAGAAGA+AGG 0.501366 6.3:+15176041 MS.gene47051:CDS
AGTTTCATCATACTTGAAGA+AGG 0.501588 6.3:+15175285 MS.gene47051:CDS
CACCAACCTTGACTGGTACA+AGG 0.502465 6.3:+15175381 MS.gene47051:CDS
AACTTGTTACCAAGATTGAC+AGG 0.511236 6.3:+15175851 MS.gene47051:CDS
CACCCTGGTCAGATTGGAAA+CGG 0.512174 6.3:+15175775 MS.gene47051:CDS
TACCTAGCCTTCGAGTACTT+AGG 0.513356 6.3:-15175244 None:intergenic
GATTGACAGGCGATCTGGTA+AGG 0.518046 6.3:+15175864 MS.gene47051:CDS
CTTGTACCAGTCAAGGTTGG+TGG 0.518944 6.3:-15175380 None:intergenic
TTGGTGACTTTGGCTCCAGT+GGG 0.520107 6.3:-15176066 None:intergenic
ATCATTGACTCCACCACTGG+TGG 0.521304 6.3:+15175013 MS.gene47051:CDS
AGAGGTCCACCAACCTTGAC+TGG 0.523105 6.3:+15175374 MS.gene47051:CDS
CCGGTCTCAACACGTCCGAC+TGG 0.523632 6.3:-15175517 None:intergenic
GAGCCCAAGTTCTTGAAGAA+TGG 0.525810 6.3:+15175898 MS.gene47051:CDS
TTGAATCCGACATTGTCTCC+TGG 0.526013 6.3:-15175640 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.529820 6.3:-15175946 None:intergenic
CTTATCATTGACTCCACCAC+TGG 0.532051 6.3:+15175010 MS.gene47051:CDS
AGCGTTCATTCAAGTACGCA+TGG 0.534658 6.3:+15174822 MS.gene47051:CDS
TCACCATTCTTCAAGAACTT+GGG 0.540637 6.3:-15175901 None:intergenic
CCAAAAGTCACAACCATACC+GGG 0.540748 6.3:-15175550 None:intergenic
GATGACTTGGGAAGTGAAGT+TGG 0.546093 6.3:-15175743 None:intergenic
TCCCTTGTACCAGTCAAGGT+TGG 0.546130 6.3:-15175383 None:intergenic
CAGTGGTGGAGTCAATGATA+AGG 0.548349 6.3:-15175009 None:intergenic
TATCCGTTTCCAATCTGACC+AGG 0.548901 6.3:-15175778 None:intergenic
CGGTATTGTGAAGCCCGGTA+TGG 0.551104 6.3:+15175537 MS.gene47051:CDS
TTCTTGAAGAATGGTGATGC+TGG 0.554703 6.3:+15175907 MS.gene47051:CDS
TTGATGAAATCACGATGTCC+AGG 0.556820 6.3:-15174947 None:intergenic
TCACCTTCAAATCCGGAGAT+GGG 0.557788 6.3:-15175340 None:intergenic
CATACCGGGCTTCACAATAC+CGG 0.558131 6.3:-15175536 None:intergenic
ACCAACCTTGACTGGTACAA+GGG 0.559612 6.3:+15175382 MS.gene47051:CDS
GCAAAGGTCTCAACCACCAT+GGG 0.563446 6.3:-15175955 None:intergenic
ATCTGGTAAGGAGATTGAAA+AGG 0.563892 6.3:+15175876 MS.gene47051:CDS
AGTTGGCAGCTTCCTTGGCA+GGG 0.564600 6.3:-15175726 None:intergenic
GGTGGTTCATGATGATGACT+TGG 0.569890 6.3:-15175756 None:intergenic
GACCCACAGACAAGCCCCTA+AGG 0.571251 6.3:+15175449 MS.gene47051:CDS
AGCTTCAAAACCACCAGTGG+TGG 0.571917 6.3:-15175023 None:intergenic
TCTTGCAATGGAAGCCTTAG+GGG 0.574701 6.3:-15175463 None:intergenic
TTGGTCCCTTGTACCAGTCA+AGG 0.575920 6.3:-15175387 None:intergenic
GACTGTGCAGTAGTACTTGG+TGG 0.578462 6.3:-15174915 None:intergenic
CCAGTCGGACGTGTTGAGAC+CGG 0.578770 6.3:+15175517 MS.gene47051:CDS
TGTTAAGAATGTTGCTGTGA+AGG 0.579878 6.3:+15175663 MS.gene47051:CDS
CATGATTACTGGAACCTCCC+AGG 0.581850 6.3:+15174973 MS.gene47051:CDS
TCAAGAGCCTCAAGGAGAGT+TGG 0.584894 6.3:-15175406 None:intergenic
AAGCGAGAAGAGCATGCTCA+CGG 0.587754 6.3:-15175069 None:intergenic
AACTTCAGTTGTCAAACCAG+TGG 0.589445 6.3:-15175575 None:intergenic
AATGACTGTGCAGTAGTACT+TGG 0.591989 6.3:-15174918 None:intergenic
GAAGCTGGTATCTCTAAGGA+TGG 0.592030 6.3:+15175040 MS.gene47051:CDS
ATCTTGTAAACATCTTGCAA+TGG 0.592677 6.3:-15175475 None:intergenic
GAGGTGTGGCAATCGAGCAC+TGG 0.595189 6.3:-15175805 None:intergenic
AGCGAGAAGAGCATGCTCAC+GGG 0.595279 6.3:-15175068 None:intergenic
TTTGCTGAATATCCTCCACT+TGG 0.598309 6.3:+15175973 MS.gene47051:CDS
GTGGAGAAGAAGGATCCCAC+TGG 0.600566 6.3:+15176051 MS.gene47051:CDS
AAGGACTGCACAATCAGCCT+GGG 0.602280 6.3:-15174990 None:intergenic
GGTCACTTGATCTACAAGCT+AGG 0.604596 6.3:+15174743 MS.gene47051:CDS
TGTTGGTGTCATCAAGGCTG+TGG 0.608422 6.3:+15176032 MS.gene47051:CDS
AAATCCGGAGATGGGAACGA+AGG 0.610633 6.3:-15175332 None:intergenic
GATGGTTCCCACCAAGCCCA+TGG 0.611182 6.3:+15175939 MS.gene47051:CDS
AATCCGGAGATGGGAACGAA+GGG 0.611560 6.3:-15175331 None:intergenic
TTTCCACAAGGCAATATCGA+TGG 0.613258 6.3:-15174885 None:intergenic
GCGTTCATTCAAGTACGCAT+GGG 0.615188 6.3:+15174823 MS.gene47051:CDS
ACTTCAGTTGTCAAACCAGT+GGG 0.615673 6.3:-15175574 None:intergenic
AGCAAAGGTCTCAACCACCA+TGG 0.617611 6.3:-15175956 None:intergenic
CTCCAAGGATGACCCTGCCA+AGG 0.619064 6.3:+15175714 MS.gene47051:CDS
TTTCGTTGCATCCAACTCCA+AGG 0.619372 6.3:+15175699 MS.gene47051:CDS
AGTTGCTGTTGGTGTCATCA+AGG 0.621005 6.3:+15176026 MS.gene47051:CDS
CCCCTAAGTACTCGAAGGCT+AGG 0.623456 6.3:+15175242 MS.gene47051:CDS
AAGGTGACAACATGATTGAG+AGG 0.624581 6.3:+15175356 MS.gene47051:CDS
GAGACCGGTATTGTGAAGCC+CGG 0.625104 6.3:+15175532 MS.gene47051:CDS
TGATCTGGTCAAGAGCCTCA+AGG 0.634180 6.3:-15175414 None:intergenic
GATGATCTGTTGTTGTAACA+AGG 0.635291 6.3:+15175111 MS.gene47051:CDS
TGATGCTGGTATCATTAAGA+TGG 0.636151 6.3:+15175921 MS.gene47051:CDS
TGTGATCGAGAGATTCGAGA+AGG 0.638590 6.3:+15174781 MS.gene47051:CDS
GACTGCACAATCAGCCTGGG+AGG 0.640106 6.3:-15174987 None:intergenic
CACTTGATCTACAAGCTAGG+AGG 0.645428 6.3:+15174746 MS.gene47051:CDS
TTACCATCGATATTGCCTTG+TGG 0.647445 6.3:+15174882 MS.gene47051:CDS
GTCATCATCATGAACCACCC+TGG 0.650188 6.3:+15175760 MS.gene47051:CDS
CCTAGCCTTCGAGTACTTAG+GGG 0.651395 6.3:-15175242 None:intergenic
GCTCTTCCAGGAGACAATGT+CGG 0.651488 6.3:+15175634 MS.gene47051:CDS
AAACTTCACAGCAATGTGAG+AGG 0.653594 6.3:-15175824 None:intergenic
ACAGCAAAACGTCCAAGTGG+AGG 0.656142 6.3:-15175985 None:intergenic
ATGCGTCAAACAGTTGCTGT+TGG 0.665270 6.3:+15176015 MS.gene47051:CDS
TAGGTACGATGAAATCGTGA+AGG 0.668064 6.3:+15175261 MS.gene47051:CDS
ACCAGCTTCAAAACCACCAG+TGG 0.669846 6.3:-15175026 None:intergenic
TCACAGCAATGTGAGAGGTG+TGG 0.670228 6.3:-15175819 None:intergenic
TACCACCCCTAAGTACTCGA+AGG 0.670350 6.3:+15175237 MS.gene47051:CDS
AAGTGGAGGATATTCAGCAA+AGG 0.671437 6.3:-15175971 None:intergenic
AGCCTTCGAGTACTTAGGGG+TGG 0.671611 6.3:-15175239 None:intergenic
GTCTGTTGAGATGCATCACG+AGG 0.676379 6.3:+15175600 MS.gene47051:CDS
CAAGGGACCAACTCTCCTTG+AGG 0.682171 6.3:+15175399 MS.gene47051:CDS
GGTATTGGTACTGTGCCAGT+CGG 0.686491 6.3:+15175502 MS.gene47051:CDS
CTGACAGCAAAACGTCCAAG+TGG 0.686824 6.3:-15175988 None:intergenic
CGTTTCCAATCTGACCAGGG+TGG 0.687081 6.3:-15175774 None:intergenic
ATCCGTTTCCAATCTGACCA+GGG 0.688739 6.3:-15175777 None:intergenic
GTGGTTCATGATGATGACTT+GGG 0.690284 6.3:-15175755 None:intergenic
GCTGTGAAGGATCTCAAGCG+TGG 0.706441 6.3:+15175676 MS.gene47051:CDS
GGTTCCCACCAAGCCCATGG+TGG 0.716413 6.3:+15175942 MS.gene47051:CDS
GGTGGTCTCGAATTTCCACA+AGG 0.719757 6.3:-15174897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTTTATGTTGAGTTA+CGG + chr6.3:15175174-15175193 MS.gene47051:intron 20.0%
!!! TTTCAATATTTTGATTCAGA+TGG + chr6.3:15175210-15175229 MS.gene47051:intron 20.0%
AGTTTCATCATACTTGAAGA+AGG + chr6.3:15175285-15175304 MS.gene47051:CDS 30.0%
ATCTTGTAAACATCTTGCAA+TGG - chr6.3:15175478-15175497 None:intergenic 30.0%
TTCATCAAGAACATGATTAC+TGG + chr6.3:15174962-15174981 MS.gene47051:CDS 30.0%
TTGCAAGATGTTTACAAGAT+TGG + chr6.3:15175478-15175497 MS.gene47051:CDS 30.0%
ATCACCATTCTTCAAGAACT+TGG - chr6.3:15175905-15175924 None:intergenic 35.0%
ATCTGGTAAGGAGATTGAAA+AGG + chr6.3:15175876-15175895 MS.gene47051:CDS 35.0%
ATGGGTTCTTGACAAACTTA+AGG + chr6.3:15174841-15174860 MS.gene47051:CDS 35.0%
CAAGATGTTTACAAGATTGG+TGG + chr6.3:15175481-15175500 MS.gene47051:CDS 35.0%
CATATCAACATTGTCGTCAT+TGG + chr6.3:15174689-15174708 MS.gene47051:CDS 35.0%
GATGATCTGTTGTTGTAACA+AGG + chr6.3:15175111-15175130 MS.gene47051:CDS 35.0%
TCACCATTCTTCAAGAACTT+GGG - chr6.3:15175904-15175923 None:intergenic 35.0%
TCATCATACTTGAAGAAGGT+TGG + chr6.3:15175289-15175308 MS.gene47051:CDS 35.0%
TCTGGAAAATCAACAACAAC+TGG + chr6.3:15174722-15174741 MS.gene47051:CDS 35.0%
TGATGCTGGTATCATTAAGA+TGG + chr6.3:15175921-15175940 MS.gene47051:CDS 35.0%
TGTTAAGAATGTTGCTGTGA+AGG + chr6.3:15175663-15175682 MS.gene47051:CDS 35.0%
! GTTTACAAGATTGGTGGTAT+TGG + chr6.3:15175487-15175506 MS.gene47051:CDS 35.0%
!! AACTTGTTACCAAGATTGAC+AGG + chr6.3:15175851-15175870 MS.gene47051:CDS 35.0%
!!! TTTTGAAGCTGGTATCTCTA+AGG + chr6.3:15175036-15175055 MS.gene47051:CDS 35.0%
AAACTTCACAGCAATGTGAG+AGG - chr6.3:15175827-15175846 None:intergenic 40.0%
AACTTCAGTTGTCAAACCAG+TGG - chr6.3:15175578-15175597 None:intergenic 40.0%
AAGGTGACAACATGATTGAG+AGG + chr6.3:15175356-15175375 MS.gene47051:CDS 40.0%
AAGTGGAGGATATTCAGCAA+AGG - chr6.3:15175974-15175993 None:intergenic 40.0%
AATGACTGTGCAGTAGTACT+TGG - chr6.3:15174921-15174940 None:intergenic 40.0%
ACTTCAGTTGTCAAACCAGT+GGG - chr6.3:15175577-15175596 None:intergenic 40.0%
ATCTTGCAATGGAAGCCTTA+GGG - chr6.3:15175467-15175486 None:intergenic 40.0%
CATGTTGTCACCTTCAAATC+CGG - chr6.3:15175350-15175369 None:intergenic 40.0%
TAGGTACGATGAAATCGTGA+AGG + chr6.3:15175261-15175280 MS.gene47051:CDS 40.0%
TCCAAAAGTCACAACCATAC+CGG - chr6.3:15175554-15175573 None:intergenic 40.0%
TGAGTTACGGATTCTGACTT+TGG + chr6.3:15175187-15175206 MS.gene47051:intron 40.0%
TTACCATCGATATTGCCTTG+TGG + chr6.3:15174882-15174901 MS.gene47051:CDS 40.0%
TTGATGAAATCACGATGTCC+AGG - chr6.3:15174950-15174969 None:intergenic 40.0%
TTTCCACAAGGCAATATCGA+TGG - chr6.3:15174888-15174907 None:intergenic 40.0%
TTTGCTGAATATCCTCCACT+TGG + chr6.3:15175973-15175992 MS.gene47051:CDS 40.0%
! GAACGAAGGGAATTTTGTCT+GGG - chr6.3:15175321-15175340 None:intergenic 40.0%
! GTGGTTCATGATGATGACTT+GGG - chr6.3:15175758-15175777 None:intergenic 40.0%
! TTCTTGAAGAATGGTGATGC+TGG + chr6.3:15175907-15175926 MS.gene47051:CDS 40.0%
ACCAACCTTGACTGGTACAA+GGG + chr6.3:15175382-15175401 MS.gene47051:CDS 45.0%
AGCGTTCATTCAAGTACGCA+TGG + chr6.3:15174822-15174841 MS.gene47051:CDS 45.0%
ATCCGTTTCCAATCTGACCA+GGG - chr6.3:15175780-15175799 None:intergenic 45.0%
ATGCGTCAAACAGTTGCTGT+TGG + chr6.3:15176015-15176034 MS.gene47051:CDS 45.0%
CACTTGATCTACAAGCTAGG+AGG + chr6.3:15174746-15174765 MS.gene47051:CDS 45.0%
CATCTTGCAATGGAAGCCTT+AGG - chr6.3:15175468-15175487 None:intergenic 45.0%
CCAAAAGTCACAACCATACC+GGG - chr6.3:15175553-15175572 None:intergenic 45.0%
GAGCCCAAGTTCTTGAAGAA+TGG + chr6.3:15175898-15175917 MS.gene47051:CDS 45.0%
GCGTTCATTCAAGTACGCAT+GGG + chr6.3:15174823-15174842 MS.gene47051:CDS 45.0%
GGTCACTTGATCTACAAGCT+AGG + chr6.3:15174743-15174762 MS.gene47051:CDS 45.0%
TATCCGTTTCCAATCTGACC+AGG - chr6.3:15175781-15175800 None:intergenic 45.0%
TCACCTTCAAATCCGGAGAT+GGG - chr6.3:15175343-15175362 None:intergenic 45.0%
TCTTGCAATGGAAGCCTTAG+GGG - chr6.3:15175466-15175485 None:intergenic 45.0%
TGTGATCGAGAGATTCGAGA+AGG + chr6.3:15174781-15174800 MS.gene47051:CDS 45.0%
TTGAATCCGACATTGTCTCC+TGG - chr6.3:15175643-15175662 None:intergenic 45.0%
TTTCGTTGCATCCAACTCCA+AGG + chr6.3:15175699-15175718 MS.gene47051:CDS 45.0%
! ACCTAGCCTTCGAGTACTTA+GGG - chr6.3:15175246-15175265 None:intergenic 45.0%
! CAGTGGTGGAGTCAATGATA+AGG - chr6.3:15175012-15175031 None:intergenic 45.0%
! GAAGCTGGTATCTCTAAGGA+TGG + chr6.3:15175040-15175059 MS.gene47051:CDS 45.0%
! GATGACTTGGGAAGTGAAGT+TGG - chr6.3:15175746-15175765 None:intergenic 45.0%
! GGAACGAAGGGAATTTTGTC+TGG - chr6.3:15175322-15175341 None:intergenic 45.0%
! GGTGGTTCATGATGATGACT+TGG - chr6.3:15175759-15175778 None:intergenic 45.0%
! TACCTAGCCTTCGAGTACTT+AGG - chr6.3:15175247-15175266 None:intergenic 45.0%
!! AGTTGCTGTTGGTGTCATCA+AGG + chr6.3:15176026-15176045 MS.gene47051:CDS 45.0%
!! CTTATCATTGACTCCACCAC+TGG + chr6.3:15175010-15175029 MS.gene47051:CDS 45.0%
!! GCTCTTCTCGCTTTTACTCT+TGG + chr6.3:15175079-15175098 MS.gene47051:CDS 45.0%
AAATCCGGAGATGGGAACGA+AGG - chr6.3:15175335-15175354 None:intergenic 50.0%
AAGGACTGCACAATCAGCCT+GGG - chr6.3:15174993-15175012 None:intergenic 50.0%
AATCCGGAGATGGGAACGAA+GGG - chr6.3:15175334-15175353 None:intergenic 50.0%
ACAGCAAAACGTCCAAGTGG+AGG - chr6.3:15175988-15176007 None:intergenic 50.0%
ACCAAGATTGACAGGCGATC+TGG + chr6.3:15175859-15175878 MS.gene47051:CDS 50.0%
ACCAGATCGCCTGTCAATCT+TGG - chr6.3:15175863-15175882 None:intergenic 50.0%
ACCAGCTTCAAAACCACCAG+TGG - chr6.3:15175029-15175048 None:intergenic 50.0%
AGCAAAGGTCTCAACCACCA+TGG - chr6.3:15175959-15175978 None:intergenic 50.0%
AGCTTCAAAACCACCAGTGG+TGG - chr6.3:15175026-15175045 None:intergenic 50.0%
AGTGAAGTTGGCAGCTTCCT+TGG - chr6.3:15175734-15175753 None:intergenic 50.0%
ATGAACCACCCTGGTCAGAT+TGG + chr6.3:15175769-15175788 MS.gene47051:CDS 50.0%
ATTCCCTTCGTTCCCATCTC+CGG + chr6.3:15175328-15175347 MS.gene47051:CDS 50.0%
CACCAACCTTGACTGGTACA+AGG + chr6.3:15175381-15175400 MS.gene47051:CDS 50.0%
CACCCTGGTCAGATTGGAAA+CGG + chr6.3:15175775-15175794 MS.gene47051:CDS 50.0%
CATACCGGGCTTCACAATAC+CGG - chr6.3:15175539-15175558 None:intergenic 50.0%
CATCAAGGCTGTGGAGAAGA+AGG + chr6.3:15176041-15176060 MS.gene47051:CDS 50.0%
CATGATTACTGGAACCTCCC+AGG + chr6.3:15174973-15174992 MS.gene47051:CDS 50.0%
CTGACAGCAAAACGTCCAAG+TGG - chr6.3:15175991-15176010 None:intergenic 50.0%
CTTAAGGCTGAGCGTGAAAG+AGG + chr6.3:15174857-15174876 MS.gene47051:CDS 50.0%
CTTCTTCTTGGCAGCAGCTT+TGG - chr6.3:15176088-15176107 None:intergenic 50.0%
CTTGTACCAGTCAAGGTTGG+TGG - chr6.3:15175383-15175402 None:intergenic 50.0%
GACTGTGCAGTAGTACTTGG+TGG - chr6.3:15174918-15174937 None:intergenic 50.0%
GATTGACAGGCGATCTGGTA+AGG + chr6.3:15175864-15175883 MS.gene47051:CDS 50.0%
GCAAAGGTCTCAACCACCAT+GGG - chr6.3:15175958-15175977 None:intergenic 50.0%
GCTCTTCCAGGAGACAATGT+CGG + chr6.3:15175634-15175653 MS.gene47051:CDS 50.0%
GGTGGTCTCGAATTTCCACA+AGG - chr6.3:15174900-15174919 None:intergenic 50.0%
GTCACCTTCAAATCCGGAGA+TGG - chr6.3:15175344-15175363 None:intergenic 50.0%
GTCATCATCATGAACCACCC+TGG + chr6.3:15175760-15175779 MS.gene47051:CDS 50.0%
GTCTGTTGAGATGCATCACG+AGG + chr6.3:15175600-15175619 MS.gene47051:CDS 50.0%
GTTCCCATCTCCGGATTTGA+AGG + chr6.3:15175337-15175356 MS.gene47051:CDS 50.0%
TAAGGACTGCACAATCAGCC+TGG - chr6.3:15174994-15175013 None:intergenic 50.0%
TACCACCCCTAAGTACTCGA+AGG + chr6.3:15175237-15175256 MS.gene47051:CDS 50.0%
TCAAGAGCCTCAAGGAGAGT+TGG - chr6.3:15175409-15175428 None:intergenic 50.0%
TCACAGCAATGTGAGAGGTG+TGG - chr6.3:15175822-15175841 None:intergenic 50.0%
TCCCTTGTACCAGTCAAGGT+TGG - chr6.3:15175386-15175405 None:intergenic 50.0%
TGATCTGGTCAAGAGCCTCA+AGG - chr6.3:15175417-15175436 None:intergenic 50.0%
TGCACAGTCATTGATGCTCC+TGG + chr6.3:15174929-15174948 MS.gene47051:CDS 50.0%
TTGGTCCCTTGTACCAGTCA+AGG - chr6.3:15175390-15175409 None:intergenic 50.0%
! AAGCGAGAAGAGCATGCTCA+CGG - chr6.3:15175072-15175091 None:intergenic 50.0%
! CCCGGTATGGTTGTGACTTT+TGG + chr6.3:15175550-15175569 MS.gene47051:CDS 50.0%
! CCTAGCCTTCGAGTACTTAG+GGG - chr6.3:15175245-15175264 None:intergenic 50.0%
! GTTGTGACTTTTGGACCCAC+TGG + chr6.3:15175559-15175578 MS.gene47051:CDS 50.0%
! TTGGTGACTTTGGCTCCAGT+GGG - chr6.3:15176069-15176088 None:intergenic 50.0%
! TTTGGTGACTTTGGCTCCAG+TGG - chr6.3:15176070-15176089 None:intergenic 50.0%
!! ATCATTGACTCCACCACTGG+TGG + chr6.3:15175013-15175032 MS.gene47051:CDS 50.0%
!! GGTATTGGTACTGTGCCAGT+CGG + chr6.3:15175502-15175521 MS.gene47051:CDS 50.0%
!! GTCATTGGACATGTCGACTC+TGG + chr6.3:15174704-15174723 MS.gene47051:CDS 50.0%
!! TGTTGGTGTCATCAAGGCTG+TGG + chr6.3:15176032-15176051 MS.gene47051:CDS 50.0%
!!! ACCACTGGTGGTTTTGAAGC+TGG + chr6.3:15175025-15175044 MS.gene47051:CDS 50.0%
AAGCCTTAGGGGCTTGTCTG+TGG - chr6.3:15175455-15175474 None:intergenic 55.0%
AAGTTGGCAGCTTCCTTGGC+AGG - chr6.3:15175730-15175749 None:intergenic 55.0%
AGAGGTCCACCAACCTTGAC+TGG + chr6.3:15175374-15175393 MS.gene47051:CDS 55.0%
AGCCTTAGGGGCTTGTCTGT+GGG - chr6.3:15175454-15175473 None:intergenic 55.0%
AGCCTTCGAGTACTTAGGGG+TGG - chr6.3:15175242-15175261 None:intergenic 55.0%
AGTTGGCAGCTTCCTTGGCA+GGG - chr6.3:15175729-15175748 None:intergenic 55.0%
CAAGGGACCAACTCTCCTTG+AGG + chr6.3:15175399-15175418 MS.gene47051:CDS 55.0%
CCCCTAAGTACTCGAAGGCT+AGG + chr6.3:15175242-15175261 MS.gene47051:CDS 55.0%
CGGTATTGTGAAGCCCGGTA+TGG + chr6.3:15175537-15175556 MS.gene47051:CDS 55.0%
CGTTTCCAATCTGACCAGGG+TGG - chr6.3:15175777-15175796 None:intergenic 55.0%
GAGACCGGTATTGTGAAGCC+CGG + chr6.3:15175532-15175551 MS.gene47051:CDS 55.0%
GCTCTCACTGAAGCTCTTCC+AGG + chr6.3:15175622-15175641 MS.gene47051:CDS 55.0%
GCTGTGAAGGATCTCAAGCG+TGG + chr6.3:15175676-15175695 MS.gene47051:CDS 55.0%
GGCTTGTCTGTGGGTCTCTT+GGG - chr6.3:15175445-15175464 None:intergenic 55.0%
GTCTCTTGGGCTCGTTGATC+TGG - chr6.3:15175432-15175451 None:intergenic 55.0%
GTGGAGAAGAAGGATCCCAC+TGG + chr6.3:15176051-15176070 MS.gene47051:CDS 55.0%
TTCCTTGGCAGGGTCATCCT+TGG - chr6.3:15175719-15175738 None:intergenic 55.0%
! AGCGAGAAGAGCATGCTCAC+GGG - chr6.3:15175071-15175090 None:intergenic 55.0%
! GGCAGCAGCTTTGGTGACTT+TGG - chr6.3:15176079-15176098 None:intergenic 55.0%
! TCAACCACCATGGGCTTGGT+GGG - chr6.3:15175949-15175968 None:intergenic 55.0%
CCAGTCGGACGTGTTGAGAC+CGG + chr6.3:15175517-15175536 MS.gene47051:CDS 60.0%
CTCAACCACCATGGGCTTGG+TGG - chr6.3:15175950-15175969 None:intergenic 60.0%
CTCCAAGGATGACCCTGCCA+AGG + chr6.3:15175714-15175733 MS.gene47051:CDS 60.0%
GACCCACAGACAAGCCCCTA+AGG + chr6.3:15175449-15175468 MS.gene47051:CDS 60.0%
GACTGCACAATCAGCCTGGG+AGG - chr6.3:15174990-15175009 None:intergenic 60.0%
GAGGTGTGGCAATCGAGCAC+TGG - chr6.3:15175808-15175827 None:intergenic 60.0%
GATGGTTCCCACCAAGCCCA+TGG + chr6.3:15175939-15175958 MS.gene47051:CDS 60.0%
GGCAGGGTCATCCTTGGAGT+TGG - chr6.3:15175713-15175732 None:intergenic 60.0%
GGGCTTGTCTGTGGGTCTCT+TGG - chr6.3:15175446-15175465 None:intergenic 60.0%
GGTCTCAACCACCATGGGCT+TGG - chr6.3:15175953-15175972 None:intergenic 60.0%
CCGGTCTCAACACGTCCGAC+TGG - chr6.3:15175520-15175539 None:intergenic 65.0%
GGTTCCCACCAAGCCCATGG+TGG + chr6.3:15175942-15175961 MS.gene47051:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 15174671 15176110 15174671 ID=MS.gene47051
chr6.3 mRNA 15174671 15176110 15174671 ID=MS.gene47051.t1;Parent=MS.gene47051
chr6.3 exon 15174671 15175132 15174671 ID=MS.gene47051.t1.exon1;Parent=MS.gene47051.t1
chr6.3 CDS 15174671 15175132 15174671 ID=cds.MS.gene47051.t1;Parent=MS.gene47051.t1
chr6.3 exon 15175229 15176110 15175229 ID=MS.gene47051.t1.exon2;Parent=MS.gene47051.t1
chr6.3 CDS 15175229 15176110 15175229 ID=cds.MS.gene47051.t1;Parent=MS.gene47051.t1
Gene Sequence

>MS.gene47051

ATGGGAAAAGAAAAGATTCATATCAACATTGTCGTCATTGGACATGTCGACTCTGGAAAATCAACAACAACTGGTCACTTGATCTACAAGCTAGGAGGTATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAAATGAACAAGCGTTCATTCAAGTACGCATGGGTTCTTGACAAACTTAAGGCTGAGCGTGAAAGAGGAATTACCATCGATATTGCCTTGTGGAAATTCGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCTGGACATCGTGATTTCATCAAGAACATGATTACTGGAACCTCCCAGGCTGATTGTGCAGTCCTTATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCCGTGAGCATGCTCTTCTCGCTTTTACTCTTGGAGTGAAGCAGATGATCTGTTGTTGTAACAAGGTAAATTTCTAGTGCTAGATTTGTATGAACATTGTTATGATATGATTTTTATGTTGAGTTACGGATTCTGACTTTGGTTTCAATATTTTGATTCAGATGGATGCTACCACCCCTAAGTACTCGAAGGCTAGGTACGATGAAATCGTGAAGGAAGTTTCATCATACTTGAAGAAGGTTGGTTACAACCCAGACAAAATTCCCTTCGTTCCCATCTCCGGATTTGAAGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTCCTTGAGGCTCTTGACCAGATCAACGAGCCCAAGAGACCCACAGACAAGCCCCTAAGGCTTCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGTACTGTGCCAGTCGGACGTGTTGAGACCGGTATTGTGAAGCCCGGTATGGTTGTGACTTTTGGACCCACTGGTTTGACAACTGAAGTTAAGTCTGTTGAGATGCATCACGAGGCTCTCACTGAAGCTCTTCCAGGAGACAATGTCGGATTCAATGTTAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTTCGTTGCATCCAACTCCAAGGATGACCCTGCCAAGGAAGCTGCCAACTTCACTTCCCAAGTCATCATCATGAACCACCCTGGTCAGATTGGAAACGGATATGCACCAGTGCTCGATTGCCACACCTCTCACATTGCTGTGAAGTTTGCTGAACTTGTTACCAAGATTGACAGGCGATCTGGTAAGGAGATTGAAAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGTATCATTAAGATGGTTCCCACCAAGCCCATGGTGGTTGAGACCTTTGCTGAATATCCTCCACTTGGACGTTTTGCTGTCAGAGACATGCGTCAAACAGTTGCTGTTGGTGTCATCAAGGCTGTGGAGAAGAAGGATCCCACTGGAGCCAAAGTCACCAAAGCTGCTGCCAAGAAGAAGTGA

Protein sequence

>MS.gene47051.t1

MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIVKPGMVVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAAKKK