AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001097


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001097.t1 MTR_6g021800 100.000 447 0 0 1 447 1 447 0.0 918
MS.gene001097.t1 MTR_6g021805 100.000 447 0 0 1 447 1 447 0.0 918
MS.gene001097.t1 MTR_1g495705 96.652 448 14 1 1 447 1 448 0.0 895
MS.gene001097.t1 MTR_1g095650 96.652 448 14 1 1 447 1 448 0.0 895
MS.gene001097.t1 MTR_1g095703 96.429 448 15 1 1 447 1 448 0.0 895
MS.gene001097.t1 MTR_4g014810 95.302 447 21 0 1 447 1 447 0.0 891
MS.gene001097.t1 MTR_1g013680 95.227 440 18 1 1 437 1 440 0.0 865
MS.gene001097.t1 MTR_1g085410 81.336 434 81 0 1 434 1 434 0.0 739
MS.gene001097.t1 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 726
MS.gene001097.t1 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 724
MS.gene001097.t1 MTR_1g024175 78.802 434 92 0 1 434 1 434 0.0 724
MS.gene001097.t1 MTR_8g014590 77.951 449 96 2 1 446 1 449 0.0 713
MS.gene001097.t1 MTR_1g095650 95.965 347 13 1 102 447 1 347 0.0 688
MS.gene001097.t1 MTR_2g082730 70.682 440 112 2 1 438 1 425 0.0 639
MS.gene001097.t1 MTR_5g037350 66.383 470 121 1 3 435 13 482 0.0 629
MS.gene001097.t1 MTR_1g089520 69.406 438 116 3 4 440 5 425 0.0 623
MS.gene001097.t1 MTR_2g082665 65.682 440 108 2 1 438 1 399 0.0 581
MS.gene001097.t1 MTR_2g037420 63.053 452 121 4 1 447 1 411 0.0 558
MS.gene001097.t1 MTR_2g080210 64.368 435 119 4 1 432 1 402 0.0 549
MS.gene001097.t1 MTR_8g013910 63.029 449 131 5 1 433 1 430 0.0 546
MS.gene001097.t1 MTR_8g008740 78.154 325 70 1 1 324 1 325 0.0 538
MS.gene001097.t1 MTR_1g112460 64.094 298 65 4 155 446 1 262 3.93e-124 362
MS.gene001097.t1 MTR_1g495735 74.129 201 42 1 240 430 106 306 3.35e-99 299
MS.gene001097.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 4.80e-17 82.0
MS.gene001097.t1 MTR_6g080420 37.731 432 255 6 5 428 89 514 1.21e-96 300
MS.gene001097.t1 MTR_8g106700 37.731 432 259 6 4 429 49 476 1.45e-93 291
MS.gene001097.t1 MTR_8g106700 37.731 432 259 6 4 429 43 470 2.18e-93 290
MS.gene001097.t1 MTR_8g106700 37.731 432 259 6 4 429 70 497 4.03e-93 290
MS.gene001097.t1 MTR_8g087950 35.566 433 270 6 7 433 275 704 2.05e-90 289
MS.gene001097.t1 MTR_8g087950 35.566 433 270 6 7 433 348 777 1.09e-89 289
MS.gene001097.t1 MTR_1g101880 86.364 154 21 0 1 154 1 154 1.19e-89 273
MS.gene001097.t1 MTR_4g054970 55.372 242 79 4 193 431 50 265 2.03e-79 248
MS.gene001097.t1 MTR_4g054970 77.273 44 10 0 1 44 1 44 4.58e-13 69.7
MS.gene001097.t1 MTR_1g024165 81.884 138 25 0 8 145 12 149 1.95e-78 240
MS.gene001097.t1 MTR_8g014950 75.490 102 25 0 3 104 4 105 2.57e-47 158
MS.gene001097.t1 MTR_7g094460 30.227 440 243 14 3 429 59 447 1.67e-45 164
MS.gene001097.t1 MTR_7g098190 53.892 167 51 5 56 220 10 152 1.17e-42 149
MS.gene001097.t1 MTR_3g076660 30.631 444 247 15 3 429 88 487 5.23e-42 155
MS.gene001097.t1 MTR_2g021300 29.385 439 248 12 3 429 46 434 1.09e-41 153
MS.gene001097.t1 MTR_8g014960 62.195 82 31 0 213 294 2 83 2.88e-27 107
MS.gene001097.t1 MTR_3g097250 26.103 272 144 9 9 272 85 307 2.92e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001097.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001097.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001097.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001097.t1 AT1G07920 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001097.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001097.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001097.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001097.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001097.t1 AT1G07930 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene001097.t1 AT1G07930 98.824 255 3 0 1 255 1 255 0.0 530
MS.gene001097.t1 AT1G07930 90.517 116 11 0 331 446 254 369 1.79e-68 223
MS.gene001097.t1 AT1G18070 37.412 425 258 5 5 424 99 520 6.59e-94 293
MS.gene001097.t1 AT1G18070 37.412 425 258 5 5 424 99 520 6.59e-94 293
MS.gene001097.t1 AT1G18070 36.697 436 257 6 5 424 99 531 1.04e-90 285
MS.gene001097.t1 AT5G10630 35.765 425 265 5 7 426 239 660 1.84e-90 288
MS.gene001097.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.88e-90 288
MS.gene001097.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.88e-90 288
MS.gene001097.t1 AT5G10630 35.765 425 265 5 7 426 310 731 9.81e-90 288
MS.gene001097.t1 AT5G10630 35.765 425 265 5 7 426 315 736 1.10e-89 288
MS.gene001097.t1 AT1G35550 77.885 104 23 0 335 438 1 104 5.60e-54 176
MS.gene001097.t1 AT4G20360 30.594 438 255 10 3 429 75 474 1.27e-44 162
MS.gene001097.t1 AT4G20360 30.594 438 255 10 3 429 75 474 1.27e-44 162
MS.gene001097.t1 AT4G02930 29.977 437 249 13 3 429 63 452 2.02e-44 161
MS.gene001097.t1 AT2G31060 25.000 264 160 8 9 263 61 295 1.60e-12 70.1
MS.gene001097.t1 AT2G31060 24.615 260 162 7 9 263 61 291 2.25e-11 66.6
MS.gene001097.t1 AT5G08650 27.037 270 144 10 9 272 88 310 2.46e-11 66.2
MS.gene001097.t1 AT5G08650 27.037 270 144 10 9 272 88 310 2.73e-11 66.2

Find 135 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGGTATGGTTGTGACTTT+TGG 0.190241 6.2:+15168365 MS.gene001097:CDS
GGGCTTGTCTGTGGGTCTCT+TGG 0.228126 6.2:-15168258 None:intergenic
CTTCTTCTTGGCAGCAGCTT+TGG 0.247525 6.2:-15168900 None:intergenic
GGCTTGTCTGTGGGTCTCTT+GGG 0.275199 6.2:-15168257 None:intergenic
TTCATTAAGAACATGATTAC+TGG 0.308905 6.2:+15167777 MS.gene001097:CDS
GGTGGGAGATCACTTCTTCT+TGG 0.325386 6.2:-15168912 None:intergenic
GCTCTCACTGAAGCTCTTCC+AGG 0.343392 6.2:+15168437 MS.gene001097:CDS
TTGCAAGATGTTTACAAGAT+TGG 0.346171 6.2:+15168293 MS.gene001097:CDS
GTCTCTTGGGCTCGTTGATC+TGG 0.347889 6.2:-15168244 None:intergenic
CATATCAACATTGTCGTCAT+TGG 0.354281 6.2:+15167504 MS.gene001097:CDS
ATCACCATTCTTCAAGAACT+TGG 0.354818 6.2:-15168717 None:intergenic
ACCTAGCCTTTGAGTACTTA+GGG 0.356571 6.2:-15168058 None:intergenic
GTTTACAAGATTGGTGGTAT+TGG 0.363154 6.2:+15168302 MS.gene001097:CDS
ATCCCATTCGTTCCAATCTC+TGG 0.368437 6.2:+15168143 MS.gene001097:CDS
GGCAGCAGCTTTGGTGACTT+TGG 0.372842 6.2:-15168891 None:intergenic
AAGTTGGCAGCTTCCTTGGC+AGG 0.382611 6.2:-15168542 None:intergenic
AGTGAAGTTGGCAGCTTCCT+TGG 0.410082 6.2:-15168546 None:intergenic
ACCAGATCGCCTGTCAATCT+TGG 0.419719 6.2:-15168675 None:intergenic
TTCCTTGGCAGGGTCATCCT+TGG 0.427055 6.2:-15168531 None:intergenic
ATGGGTTCTTGACAAGCTTA+AGG 0.430277 6.2:+15167656 MS.gene001097:CDS
AAGCCTGAGGGGCTTGTCTG+TGG 0.432212 6.2:-15168267 None:intergenic
TCACCTTCAAAACCAGAGAT+TGG 0.432839 6.2:-15168155 None:intergenic
TCTGGAAAATCAACAACAAC+TGG 0.436226 6.2:+15167537 MS.gene001097:CDS
AGCCTGAGGGGCTTGTCTGT+GGG 0.440652 6.2:-15168266 None:intergenic
CTCGACCACCATGGGCTTGG+TGG 0.447012 6.2:-15168762 None:intergenic
GGCAGGGTCATCCTTGGAGT+TGG 0.452433 6.2:-15168525 None:intergenic
ATGAACCACCCTGGTCAGAT+TGG 0.454810 6.2:+15168584 MS.gene001097:CDS
CTTATCATTGACTCCACCAC+TGG 0.461752 6.2:+15167825 MS.gene001097:CDS
TTTGGTGACTTTGGCTCCAG+TGG 0.473646 6.2:-15168882 None:intergenic
ACCAAGATTGACAGGCGATC+TGG 0.474566 6.2:+15168674 MS.gene001097:CDS
CAAGATGTTTACAAGATTGG+TGG 0.475647 6.2:+15168296 MS.gene001097:CDS
TAAGAACAGCACAATCAGCC+TGG 0.478298 6.2:-15167806 None:intergenic
GGTCTCGACCACCATGGGCT+TGG 0.479606 6.2:-15168765 None:intergenic
AGTTTCTTCCTACTTGAAGA+AGG 0.482389 6.2:+15168100 MS.gene001097:CDS
TACCTAGCCTTTGAGTACTT+AGG 0.484966 6.2:-15168059 None:intergenic
GTCATTGGACATGTCGACTC+TGG 0.490675 6.2:+15167519 MS.gene001097:CDS
TCCAAAAGTCACAACCATAC+CGG 0.497778 6.2:-15168366 None:intergenic
CTTAAGGCTGAGCGTGAAAG+AGG 0.501131 6.2:+15167672 MS.gene001097:CDS
CATCAAGGCTGTGGAGAAGA+AGG 0.501366 6.2:+15168856 MS.gene001097:CDS
CACCAACCTTGACTGGTACA+AGG 0.502465 6.2:+15168196 MS.gene001097:CDS
TCTTCCTACTTGAAGAAGGT+TGG 0.503467 6.2:+15168104 MS.gene001097:CDS
TCGACCACCATGGGCTTGGT+GGG 0.509916 6.2:-15168761 None:intergenic
AACTTGTTACCAAGATTGAC+AGG 0.511236 6.2:+15168666 MS.gene001097:CDS
CACCCTGGTCAGATTGGAAA+CGG 0.512174 6.2:+15168590 MS.gene001097:CDS
GACCCACAGACAAGCCCCTC+AGG 0.515484 6.2:+15168264 MS.gene001097:CDS
GATTGACAGGCGATCTGGTA+AGG 0.518046 6.2:+15168679 MS.gene001097:CDS
CTTGTACCAGTCAAGGTTGG+TGG 0.518944 6.2:-15168195 None:intergenic
TTGGTGACTTTGGCTCCAGT+GGG 0.520107 6.2:-15168881 None:intergenic
ATCATTGACTCCACCACTGG+TGG 0.521304 6.2:+15167828 MS.gene001097:CDS
AAACCAGAGATTGGAACGAA+TGG 0.521400 6.2:-15168146 None:intergenic
AACCAGAGATTGGAACGAAT+GGG 0.522921 6.2:-15168145 None:intergenic
AGAGGTCCACCAACCTTGAC+TGG 0.523105 6.2:+15168189 MS.gene001097:CDS
CCGGTCTCAACACGTCCGAC+TGG 0.523632 6.2:-15168332 None:intergenic
TTGAATCCGACATTGTCTCC+TGG 0.526013 6.2:-15168455 None:intergenic
TTAATGAAATCACGATGTCC+TGG 0.532533 6.2:-15167762 None:intergenic
GAGCCCAAGTTCTTGAAGAA+TGG 0.532631 6.2:+15168713 MS.gene001097:CDS
AGCGTTCATTCAAGTACGCA+TGG 0.534658 6.2:+15167637 MS.gene001097:CDS
TGCACAGTCATTGATGCTCC+AGG 0.539947 6.2:+15167744 MS.gene001097:CDS
TCACCATTCTTCAAGAACTT+GGG 0.540637 6.2:-15168716 None:intergenic
CCAAAAGTCACAACCATACC+GGG 0.540748 6.2:-15168365 None:intergenic
GATGACTTGGGAAGTGAAGT+TGG 0.546093 6.2:-15168558 None:intergenic
TCCCTTGTACCAGTCAAGGT+TGG 0.546130 6.2:-15168198 None:intergenic
AAGCGAGAAGAGCGTGCTCA+CGG 0.547764 6.2:-15167884 None:intergenic
TATCCGTTTCCAATCTGACC+AGG 0.548901 6.2:-15168593 None:intergenic
GCAAAGGTCTCGACCACCAT+GGG 0.551044 6.2:-15168770 None:intergenic
CGGTATTGTGAAGCCCGGTA+TGG 0.551104 6.2:+15168352 MS.gene001097:CDS
GTAACCAACCTTCTTCAAGT+AGG 0.553863 6.2:-15168108 None:intergenic
TTCTTGAAGAATGGTGATGC+TGG 0.554703 6.2:+15168722 MS.gene001097:CDS
ATCTTGCAATGGAAGCCTGA+GGG 0.556985 6.2:-15168279 None:intergenic
TGTTGCTGTTGGTGTCATCA+AGG 0.557300 6.2:+15168841 MS.gene001097:CDS
CATACCGGGCTTCACAATAC+CGG 0.558131 6.2:-15168351 None:intergenic
ACCAACCTTGACTGGTACAA+GGG 0.559612 6.2:+15168197 MS.gene001097:CDS
AGTTGGCAGCTTCCTTGGCA+GGG 0.564600 6.2:-15168541 None:intergenic
GGTGGTTCATGATGATGACT+TGG 0.569890 6.2:-15168571 None:intergenic
AGCTTCAAAACCACCAGTGG+TGG 0.571917 6.2:-15167838 None:intergenic
TTGGTCCCTTGTACCAGTCA+AGG 0.575920 6.2:-15168202 None:intergenic
AGCGAGAAGAGCGTGCTCAC+GGG 0.577686 6.2:-15167883 None:intergenic
GACTGTGCAGTAGTACTTGG+TGG 0.578462 6.2:-15167730 None:intergenic
CCAGTCGGACGTGTTGAGAC+CGG 0.578770 6.2:+15168332 MS.gene001097:CDS
TGTTAAGAATGTTGCTGTGA+AGG 0.579878 6.2:+15168478 MS.gene001097:CDS
CATGATTACTGGAACCTCCC+AGG 0.581850 6.2:+15167788 MS.gene001097:CDS
AACTTCAGTTGTCAAACCAG+TGG 0.589445 6.2:-15168390 None:intergenic
AATGACTGTGCAGTAGTACT+TGG 0.591989 6.2:-15167733 None:intergenic
TCAAGAGCCTCGAGGAGAGT+TGG 0.592023 6.2:-15168221 None:intergenic
GAAGCTGGTATCTCTAAGGA+TGG 0.592030 6.2:+15167855 MS.gene001097:CDS
ATCTTGTAAACATCTTGCAA+TGG 0.592677 6.2:-15168290 None:intergenic
TTTGCTGAATATCCTCCACT+TGG 0.598309 6.2:+15168788 MS.gene001097:CDS
GTGGAGAAGAAGGATCCCAC+TGG 0.600566 6.2:+15168866 MS.gene001097:CDS
GGTCACTTGATCTACAAGCT+AGG 0.604596 6.2:+15167558 MS.gene001097:CDS
AAGAACAGCACAATCAGCCT+GGG 0.607202 6.2:-15167805 None:intergenic
TGTTGGTGTCATCAAGGCTG+TGG 0.608422 6.2:+15168847 MS.gene001097:CDS
GATGGTTCCCACCAAGCCCA+TGG 0.611182 6.2:+15168754 MS.gene001097:CDS
TTTCCACAAGGCAATATCGA+TGG 0.613258 6.2:-15167700 None:intergenic
GCGTTCATTCAAGTACGCAT+GGG 0.615188 6.2:+15167638 MS.gene001097:CDS
ACTTCAGTTGTCAAACCAGT+GGG 0.615673 6.2:-15168389 None:intergenic
CTCCAAGGATGACCCTGCCA+AGG 0.619064 6.2:+15168529 MS.gene001097:CDS
TTTCGTTGCATCCAACTCCA+AGG 0.619372 6.2:+15168514 MS.gene001097:CDS
ATGCGTCAAACTGTTGCTGT+TGG 0.619748 6.2:+15168830 MS.gene001097:CDS
AAGGTGACAACATGATTGAG+AGG 0.624581 6.2:+15168171 MS.gene001097:CDS
GAGACCGGTATTGTGAAGCC+CGG 0.625104 6.2:+15168347 MS.gene001097:CDS
TCTTGCAATGGAAGCCTGAG+GGG 0.631058 6.2:-15168278 None:intergenic
ATCTGGTAAGGAGATTGAGA+AGG 0.634092 6.2:+15168691 MS.gene001097:CDS
GATGATCTGTTGTTGTAACA+AGG 0.635291 6.2:+15167926 MS.gene001097:CDS
AGCCTTTGAGTACTTAGGGG+TGG 0.635633 6.2:-15168054 None:intergenic
TGATGCTGGTATCATTAAGA+TGG 0.636151 6.2:+15168736 MS.gene001097:CDS
TGTGATCGAGAGATTCGAGA+AGG 0.638590 6.2:+15167596 MS.gene001097:CDS
AGCAAAGGTCTCGACCACCA+TGG 0.644138 6.2:-15168771 None:intergenic
CCTAGCCTTTGAGTACTTAG+GGG 0.644234 6.2:-15168057 None:intergenic
CACTTGATCTACAAGCTAGG+AGG 0.645428 6.2:+15167561 MS.gene001097:CDS
GAGGTGTGGCAATCAAGCAC+TGG 0.646700 6.2:-15168620 None:intergenic
TTACCATCGATATTGCCTTG+TGG 0.647445 6.2:+15167697 MS.gene001097:CDS
GTCATCATCATGAACCACCC+TGG 0.650188 6.2:+15168575 MS.gene001097:CDS
GCTCTTCCAGGAGACAATGT+CGG 0.651488 6.2:+15168449 MS.gene001097:CDS
AAACTTCACAGCAATGTGAG+AGG 0.653594 6.2:-15168639 None:intergenic
AACAGCACAATCAGCCTGGG+AGG 0.653730 6.2:-15167802 None:intergenic
CATCTTGCAATGGAAGCCTG+AGG 0.654491 6.2:-15168280 None:intergenic
TACCACCCCTAAGTACTCAA+AGG 0.654719 6.2:+15168052 MS.gene001097:CDS
ACAGCAAAACGTCCAAGTGG+AGG 0.656142 6.2:-15168800 None:intergenic
CCCCTAAGTACTCAAAGGCT+AGG 0.656218 6.2:+15168057 MS.gene001097:CDS
TAGGTACGACGAAATCGTGA+AGG 0.667883 6.2:+15168076 MS.gene001097:CDS
ACCAGCTTCAAAACCACCAG+TGG 0.669846 6.2:-15167841 None:intergenic
TCACAGCAATGTGAGAGGTG+TGG 0.670228 6.2:-15168634 None:intergenic
AAGTGGAGGATATTCAGCAA+AGG 0.671437 6.2:-15168786 None:intergenic
CGTTTCCAATCTGACCAGGG+TGG 0.687081 6.2:-15168589 None:intergenic
ATCCGTTTCCAATCTGACCA+GGG 0.688739 6.2:-15168592 None:intergenic
CTGACAGCAAAACGTCCAAG+TGG 0.689307 6.2:-15168803 None:intergenic
GTGGTTCATGATGATGACTT+GGG 0.690284 6.2:-15168570 None:intergenic
GGTATTGGAACTGTGCCAGT+CGG 0.702004 6.2:+15168317 MS.gene001097:CDS
GTCTGTTGAGATGCACCACG+AGG 0.705830 6.2:+15168415 MS.gene001097:CDS
GCTGTGAAGGATCTCAAGCG+TGG 0.706441 6.2:+15168491 MS.gene001097:CDS
CAAGGGACCAACTCTCCTCG+AGG 0.714910 6.2:+15168214 MS.gene001097:CDS
GGTGGTCTCGAATTTCCACA+AGG 0.719757 6.2:-15167712 None:intergenic
GGTTCCCACCAAGCCCATGG+TGG 0.721829 6.2:+15168757 MS.gene001097:CDS
TGATCTGGTCAAGAGCCTCG+AGG 0.724586 6.2:-15168229 None:intergenic
GAGCTTCAGTGAGAGCCTCG+TGG 0.728674 6.2:-15168430 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAATTTTTTGTTTCAGA+TGG + chr6.2:15168025-15168044 MS.gene001097:intron 20.0%
! TTCATTAAGAACATGATTAC+TGG + chr6.2:15167777-15167796 MS.gene001097:CDS 25.0%
ATCTTGTAAACATCTTGCAA+TGG - chr6.2:15168293-15168312 None:intergenic 30.0%
TTGCAAGATGTTTACAAGAT+TGG + chr6.2:15168293-15168312 MS.gene001097:CDS 30.0%
AGTTTCTTCCTACTTGAAGA+AGG + chr6.2:15168100-15168119 MS.gene001097:CDS 35.0%
ATCACCATTCTTCAAGAACT+TGG - chr6.2:15168720-15168739 None:intergenic 35.0%
CAAGATGTTTACAAGATTGG+TGG + chr6.2:15168296-15168315 MS.gene001097:CDS 35.0%
CATATCAACATTGTCGTCAT+TGG + chr6.2:15167504-15167523 MS.gene001097:CDS 35.0%
GATGATCTGTTGTTGTAACA+AGG + chr6.2:15167926-15167945 MS.gene001097:CDS 35.0%
TCACCATTCTTCAAGAACTT+GGG - chr6.2:15168719-15168738 None:intergenic 35.0%
TCTGGAAAATCAACAACAAC+TGG + chr6.2:15167537-15167556 MS.gene001097:CDS 35.0%
TGAGTTACAGATTCTGACTT+TGG + chr6.2:15168002-15168021 MS.gene001097:intron 35.0%
TGATGCTGGTATCATTAAGA+TGG + chr6.2:15168736-15168755 MS.gene001097:CDS 35.0%
TGTTAAGAATGTTGCTGTGA+AGG + chr6.2:15168478-15168497 MS.gene001097:CDS 35.0%
TTAATGAAATCACGATGTCC+TGG - chr6.2:15167765-15167784 None:intergenic 35.0%
! GTTTACAAGATTGGTGGTAT+TGG + chr6.2:15168302-15168321 MS.gene001097:CDS 35.0%
!! AACTTGTTACCAAGATTGAC+AGG + chr6.2:15168666-15168685 MS.gene001097:CDS 35.0%
!!! TTTTGAAGCTGGTATCTCTA+AGG + chr6.2:15167851-15167870 MS.gene001097:CDS 35.0%
AAACCAGAGATTGGAACGAA+TGG - chr6.2:15168149-15168168 None:intergenic 40.0%
AAACTTCACAGCAATGTGAG+AGG - chr6.2:15168642-15168661 None:intergenic 40.0%
AACCAGAGATTGGAACGAAT+GGG - chr6.2:15168148-15168167 None:intergenic 40.0%
AACTTCAGTTGTCAAACCAG+TGG - chr6.2:15168393-15168412 None:intergenic 40.0%
AAGGTGACAACATGATTGAG+AGG + chr6.2:15168171-15168190 MS.gene001097:CDS 40.0%
AAGTGGAGGATATTCAGCAA+AGG - chr6.2:15168789-15168808 None:intergenic 40.0%
AATGACTGTGCAGTAGTACT+TGG - chr6.2:15167736-15167755 None:intergenic 40.0%
ACTTCAGTTGTCAAACCAGT+GGG - chr6.2:15168392-15168411 None:intergenic 40.0%
ATCTGGTAAGGAGATTGAGA+AGG + chr6.2:15168691-15168710 MS.gene001097:CDS 40.0%
ATGGGTTCTTGACAAGCTTA+AGG + chr6.2:15167656-15167675 MS.gene001097:CDS 40.0%
GTAACCAACCTTCTTCAAGT+AGG - chr6.2:15168111-15168130 None:intergenic 40.0%
TCACCTTCAAAACCAGAGAT+TGG - chr6.2:15168158-15168177 None:intergenic 40.0%
TCCAAAAGTCACAACCATAC+CGG - chr6.2:15168369-15168388 None:intergenic 40.0%
TCTTCCTACTTGAAGAAGGT+TGG + chr6.2:15168104-15168123 MS.gene001097:CDS 40.0%
TTACCATCGATATTGCCTTG+TGG + chr6.2:15167697-15167716 MS.gene001097:CDS 40.0%
TTTCCACAAGGCAATATCGA+TGG - chr6.2:15167703-15167722 None:intergenic 40.0%
TTTGCTGAATATCCTCCACT+TGG + chr6.2:15168788-15168807 MS.gene001097:CDS 40.0%
! ACCTAGCCTTTGAGTACTTA+GGG - chr6.2:15168061-15168080 None:intergenic 40.0%
! GAACGAATGGGATTTTGTCT+GGG - chr6.2:15168136-15168155 None:intergenic 40.0%
! GTGGTTCATGATGATGACTT+GGG - chr6.2:15168573-15168592 None:intergenic 40.0%
! TACCTAGCCTTTGAGTACTT+AGG - chr6.2:15168062-15168081 None:intergenic 40.0%
! TTCTTGAAGAATGGTGATGC+TGG + chr6.2:15168722-15168741 MS.gene001097:CDS 40.0%
!!! GTTCCAATCTCTGGTTTTGA+AGG + chr6.2:15168152-15168171 MS.gene001097:CDS 40.0%
AAGAACAGCACAATCAGCCT+GGG - chr6.2:15167808-15167827 None:intergenic 45.0%
ACCAACCTTGACTGGTACAA+GGG + chr6.2:15168197-15168216 MS.gene001097:CDS 45.0%
AGCGTTCATTCAAGTACGCA+TGG + chr6.2:15167637-15167656 MS.gene001097:CDS 45.0%
ATCCCATTCGTTCCAATCTC+TGG + chr6.2:15168143-15168162 MS.gene001097:CDS 45.0%
ATCCGTTTCCAATCTGACCA+GGG - chr6.2:15168595-15168614 None:intergenic 45.0%
ATCTTGCAATGGAAGCCTGA+GGG - chr6.2:15168282-15168301 None:intergenic 45.0%
ATGCGTCAAACTGTTGCTGT+TGG + chr6.2:15168830-15168849 MS.gene001097:CDS 45.0%
CACTTGATCTACAAGCTAGG+AGG + chr6.2:15167561-15167580 MS.gene001097:CDS 45.0%
CCAAAAGTCACAACCATACC+GGG - chr6.2:15168368-15168387 None:intergenic 45.0%
GAGCCCAAGTTCTTGAAGAA+TGG + chr6.2:15168713-15168732 MS.gene001097:CDS 45.0%
GCGTTCATTCAAGTACGCAT+GGG + chr6.2:15167638-15167657 MS.gene001097:CDS 45.0%
GGTCACTTGATCTACAAGCT+AGG + chr6.2:15167558-15167577 MS.gene001097:CDS 45.0%
TAAGAACAGCACAATCAGCC+TGG - chr6.2:15167809-15167828 None:intergenic 45.0%
TACCACCCCTAAGTACTCAA+AGG + chr6.2:15168052-15168071 MS.gene001097:CDS 45.0%
TAGGTACGACGAAATCGTGA+AGG + chr6.2:15168076-15168095 MS.gene001097:CDS 45.0%
TATCCGTTTCCAATCTGACC+AGG - chr6.2:15168596-15168615 None:intergenic 45.0%
TGTGATCGAGAGATTCGAGA+AGG + chr6.2:15167596-15167615 MS.gene001097:CDS 45.0%
TTGAATCCGACATTGTCTCC+TGG - chr6.2:15168458-15168477 None:intergenic 45.0%
TTTCGTTGCATCCAACTCCA+AGG + chr6.2:15168514-15168533 MS.gene001097:CDS 45.0%
! CCTAGCCTTTGAGTACTTAG+GGG - chr6.2:15168060-15168079 None:intergenic 45.0%
! GAAGCTGGTATCTCTAAGGA+TGG + chr6.2:15167855-15167874 MS.gene001097:CDS 45.0%
! GATGACTTGGGAAGTGAAGT+TGG - chr6.2:15168561-15168580 None:intergenic 45.0%
! GGAACGAATGGGATTTTGTC+TGG - chr6.2:15168137-15168156 None:intergenic 45.0%
! GGTGGTTCATGATGATGACT+TGG - chr6.2:15168574-15168593 None:intergenic 45.0%
!! ACTTGGACGTTTTGCTGTCA+GGG + chr6.2:15168805-15168824 MS.gene001097:CDS 45.0%
!! CTTATCATTGACTCCACCAC+TGG + chr6.2:15167825-15167844 MS.gene001097:CDS 45.0%
!! GCTCTTCTCGCTTTTACTCT+TGG + chr6.2:15167894-15167913 MS.gene001097:CDS 45.0%
!! TGTTGCTGTTGGTGTCATCA+AGG + chr6.2:15168841-15168860 MS.gene001097:CDS 45.0%
ACAGCAAAACGTCCAAGTGG+AGG - chr6.2:15168803-15168822 None:intergenic 50.0%
ACCAAGATTGACAGGCGATC+TGG + chr6.2:15168674-15168693 MS.gene001097:CDS 50.0%
ACCAGATCGCCTGTCAATCT+TGG - chr6.2:15168678-15168697 None:intergenic 50.0%
ACCAGCTTCAAAACCACCAG+TGG - chr6.2:15167844-15167863 None:intergenic 50.0%
AGCCTTTGAGTACTTAGGGG+TGG - chr6.2:15168057-15168076 None:intergenic 50.0%
AGCTTCAAAACCACCAGTGG+TGG - chr6.2:15167841-15167860 None:intergenic 50.0%
AGTGAAGTTGGCAGCTTCCT+TGG - chr6.2:15168549-15168568 None:intergenic 50.0%
ATGAACCACCCTGGTCAGAT+TGG + chr6.2:15168584-15168603 MS.gene001097:CDS 50.0%
CACCAACCTTGACTGGTACA+AGG + chr6.2:15168196-15168215 MS.gene001097:CDS 50.0%
CACCCTGGTCAGATTGGAAA+CGG + chr6.2:15168590-15168609 MS.gene001097:CDS 50.0%
CATACCGGGCTTCACAATAC+CGG - chr6.2:15168354-15168373 None:intergenic 50.0%
CATCAAGGCTGTGGAGAAGA+AGG + chr6.2:15168856-15168875 MS.gene001097:CDS 50.0%
CATCTTGCAATGGAAGCCTG+AGG - chr6.2:15168283-15168302 None:intergenic 50.0%
CATGATTACTGGAACCTCCC+AGG + chr6.2:15167788-15167807 MS.gene001097:CDS 50.0%
CCCCTAAGTACTCAAAGGCT+AGG + chr6.2:15168057-15168076 MS.gene001097:CDS 50.0%
CTGACAGCAAAACGTCCAAG+TGG - chr6.2:15168806-15168825 None:intergenic 50.0%
CTTAAGGCTGAGCGTGAAAG+AGG + chr6.2:15167672-15167691 MS.gene001097:CDS 50.0%
CTTCTTCTTGGCAGCAGCTT+TGG - chr6.2:15168903-15168922 None:intergenic 50.0%
CTTGTACCAGTCAAGGTTGG+TGG - chr6.2:15168198-15168217 None:intergenic 50.0%
GACTGTGCAGTAGTACTTGG+TGG - chr6.2:15167733-15167752 None:intergenic 50.0%
GATTGACAGGCGATCTGGTA+AGG + chr6.2:15168679-15168698 MS.gene001097:CDS 50.0%
GCTCTTCCAGGAGACAATGT+CGG + chr6.2:15168449-15168468 MS.gene001097:CDS 50.0%
GGTGGTCTCGAATTTCCACA+AGG - chr6.2:15167715-15167734 None:intergenic 50.0%
GTCATCATCATGAACCACCC+TGG + chr6.2:15168575-15168594 MS.gene001097:CDS 50.0%
TCACAGCAATGTGAGAGGTG+TGG - chr6.2:15168637-15168656 None:intergenic 50.0%
TCCCTTGTACCAGTCAAGGT+TGG - chr6.2:15168201-15168220 None:intergenic 50.0%
TCTTGCAATGGAAGCCTGAG+GGG - chr6.2:15168281-15168300 None:intergenic 50.0%
TGCACAGTCATTGATGCTCC+AGG + chr6.2:15167744-15167763 MS.gene001097:CDS 50.0%
TTGGTCCCTTGTACCAGTCA+AGG - chr6.2:15168205-15168224 None:intergenic 50.0%
! CCCGGTATGGTTGTGACTTT+TGG + chr6.2:15168365-15168384 MS.gene001097:CDS 50.0%
! GGTATTGGAACTGTGCCAGT+CGG + chr6.2:15168317-15168336 MS.gene001097:CDS 50.0%
! GTTGTGACTTTTGGACCCAC+TGG + chr6.2:15168374-15168393 MS.gene001097:CDS 50.0%
! TTGGTGACTTTGGCTCCAGT+GGG - chr6.2:15168884-15168903 None:intergenic 50.0%
! TTTGGTGACTTTGGCTCCAG+TGG - chr6.2:15168885-15168904 None:intergenic 50.0%
!! ATCATTGACTCCACCACTGG+TGG + chr6.2:15167828-15167847 MS.gene001097:CDS 50.0%
!! CACTTGGACGTTTTGCTGTC+AGG + chr6.2:15168804-15168823 MS.gene001097:CDS 50.0%
!! GTCATTGGACATGTCGACTC+TGG + chr6.2:15167519-15167538 MS.gene001097:CDS 50.0%
!! TGTTGGTGTCATCAAGGCTG+TGG + chr6.2:15168847-15168866 MS.gene001097:CDS 50.0%
!!! ACCACTGGTGGTTTTGAAGC+TGG + chr6.2:15167840-15167859 MS.gene001097:CDS 50.0%
AACAGCACAATCAGCCTGGG+AGG - chr6.2:15167805-15167824 None:intergenic 55.0%
AAGTTGGCAGCTTCCTTGGC+AGG - chr6.2:15168545-15168564 None:intergenic 55.0%
AGAGGTCCACCAACCTTGAC+TGG + chr6.2:15168189-15168208 MS.gene001097:CDS 55.0%
AGCAAAGGTCTCGACCACCA+TGG - chr6.2:15168774-15168793 None:intergenic 55.0%
AGTTGGCAGCTTCCTTGGCA+GGG - chr6.2:15168544-15168563 None:intergenic 55.0%
CGGTATTGTGAAGCCCGGTA+TGG + chr6.2:15168352-15168371 MS.gene001097:CDS 55.0%
CGTTTCCAATCTGACCAGGG+TGG - chr6.2:15168592-15168611 None:intergenic 55.0%
GAGACCGGTATTGTGAAGCC+CGG + chr6.2:15168347-15168366 MS.gene001097:CDS 55.0%
GAGGTGTGGCAATCAAGCAC+TGG - chr6.2:15168623-15168642 None:intergenic 55.0%
GCAAAGGTCTCGACCACCAT+GGG - chr6.2:15168773-15168792 None:intergenic 55.0%
GCTCTCACTGAAGCTCTTCC+AGG + chr6.2:15168437-15168456 MS.gene001097:CDS 55.0%
GCTGTGAAGGATCTCAAGCG+TGG + chr6.2:15168491-15168510 MS.gene001097:CDS 55.0%
GGCTTGTCTGTGGGTCTCTT+GGG - chr6.2:15168260-15168279 None:intergenic 55.0%
GTCTCTTGGGCTCGTTGATC+TGG - chr6.2:15168247-15168266 None:intergenic 55.0%
GTCTGTTGAGATGCACCACG+AGG + chr6.2:15168415-15168434 MS.gene001097:CDS 55.0%
GTGGAGAAGAAGGATCCCAC+TGG + chr6.2:15168866-15168885 MS.gene001097:CDS 55.0%
TCAAGAGCCTCGAGGAGAGT+TGG - chr6.2:15168224-15168243 None:intergenic 55.0%
TGATCTGGTCAAGAGCCTCG+AGG - chr6.2:15168232-15168251 None:intergenic 55.0%
TTCCTTGGCAGGGTCATCCT+TGG - chr6.2:15168534-15168553 None:intergenic 55.0%
! AAGCGAGAAGAGCGTGCTCA+CGG - chr6.2:15167887-15167906 None:intergenic 55.0%
! GGCAGCAGCTTTGGTGACTT+TGG - chr6.2:15168894-15168913 None:intergenic 55.0%
AAGCCTGAGGGGCTTGTCTG+TGG - chr6.2:15168270-15168289 None:intergenic 60.0%
AGCCTGAGGGGCTTGTCTGT+GGG - chr6.2:15168269-15168288 None:intergenic 60.0%
CAAGGGACCAACTCTCCTCG+AGG + chr6.2:15168214-15168233 MS.gene001097:CDS 60.0%
CCAGTCGGACGTGTTGAGAC+CGG + chr6.2:15168332-15168351 MS.gene001097:CDS 60.0%
CTCCAAGGATGACCCTGCCA+AGG + chr6.2:15168529-15168548 MS.gene001097:CDS 60.0%
GAGCTTCAGTGAGAGCCTCG+TGG - chr6.2:15168433-15168452 None:intergenic 60.0%
GATGGTTCCCACCAAGCCCA+TGG + chr6.2:15168754-15168773 MS.gene001097:CDS 60.0%
GGCAGGGTCATCCTTGGAGT+TGG - chr6.2:15168528-15168547 None:intergenic 60.0%
GGGCTTGTCTGTGGGTCTCT+TGG - chr6.2:15168261-15168280 None:intergenic 60.0%
! AGCGAGAAGAGCGTGCTCAC+GGG - chr6.2:15167886-15167905 None:intergenic 60.0%
! TCGACCACCATGGGCTTGGT+GGG - chr6.2:15168764-15168783 None:intergenic 60.0%
CCGGTCTCAACACGTCCGAC+TGG - chr6.2:15168335-15168354 None:intergenic 65.0%
CTCGACCACCATGGGCTTGG+TGG - chr6.2:15168765-15168784 None:intergenic 65.0%
GACCCACAGACAAGCCCCTC+AGG + chr6.2:15168264-15168283 MS.gene001097:CDS 65.0%
GGTCTCGACCACCATGGGCT+TGG - chr6.2:15168768-15168787 None:intergenic 65.0%
GGTTCCCACCAAGCCCATGG+TGG + chr6.2:15168757-15168776 MS.gene001097:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 15167486 15168925 15167486 ID=MS.gene001097
chr6.2 mRNA 15167486 15168925 15167486 ID=MS.gene001097.t1;Parent=MS.gene001097
chr6.2 exon 15167486 15167947 15167486 ID=MS.gene001097.t1.exon1;Parent=MS.gene001097.t1
chr6.2 CDS 15167486 15167947 15167486 ID=cds.MS.gene001097.t1;Parent=MS.gene001097.t1
chr6.2 exon 15168044 15168925 15168044 ID=MS.gene001097.t1.exon2;Parent=MS.gene001097.t1
chr6.2 CDS 15168044 15168925 15168044 ID=cds.MS.gene001097.t1;Parent=MS.gene001097.t1
Gene Sequence

>MS.gene001097

ATGGGAAAAGAAAAGATTCATATCAACATTGTCGTCATTGGACATGTCGACTCTGGAAAATCAACAACAACTGGTCACTTGATCTACAAGCTAGGAGGTATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAAATGAACAAGCGTTCATTCAAGTACGCATGGGTTCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATTACCATCGATATTGCCTTGTGGAAATTCGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCAGGACATCGTGATTTCATTAAGAACATGATTACTGGAACCTCCCAGGCTGATTGTGCTGTTCTTATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCCGTGAGCACGCTCTTCTCGCTTTTACTCTTGGAGTGAAGCAGATGATCTGTTGTTGTAACAAGGTAAACTGCTAGTGCTAGATTTGTATTAACATTGTTATGATATGATTTTTATGTTGAGTTACAGATTCTGACTTTGGTTTCAATTTTTTGTTTCAGATGGATGCTACCACCCCTAAGTACTCAAAGGCTAGGTACGACGAAATCGTGAAGGAAGTTTCTTCCTACTTGAAGAAGGTTGGTTACAACCCAGACAAAATCCCATTCGTTCCAATCTCTGGTTTTGAAGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTCCTCGAGGCTCTTGACCAGATCAACGAGCCCAAGAGACCCACAGACAAGCCCCTCAGGCTTCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGAACTGTGCCAGTCGGACGTGTTGAGACCGGTATTGTGAAGCCCGGTATGGTTGTGACTTTTGGACCCACTGGTTTGACAACTGAAGTTAAGTCTGTTGAGATGCACCACGAGGCTCTCACTGAAGCTCTTCCAGGAGACAATGTCGGATTCAATGTTAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTTCGTTGCATCCAACTCCAAGGATGACCCTGCCAAGGAAGCTGCCAACTTCACTTCCCAAGTCATCATCATGAACCACCCTGGTCAGATTGGAAACGGATATGCACCAGTGCTTGATTGCCACACCTCTCACATTGCTGTGAAGTTTGCTGAACTTGTTACCAAGATTGACAGGCGATCTGGTAAGGAGATTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGTATCATTAAGATGGTTCCCACCAAGCCCATGGTGGTCGAGACCTTTGCTGAATATCCTCCACTTGGACGTTTTGCTGTCAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGGCTGTGGAGAAGAAGGATCCCACTGGAGCCAAAGTCACCAAAGCTGCTGCCAAGAAGAAGTGA

Protein sequence

>MS.gene001097.t1

MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIVKPGMVVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAAKKK