AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074183


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074183.t1 MTR_6g021800 100.000 447 0 0 1 447 1 447 0.0 918
MS.gene074183.t1 MTR_6g021805 100.000 447 0 0 1 447 1 447 0.0 918
MS.gene074183.t1 MTR_1g495705 96.652 448 14 1 1 447 1 448 0.0 895
MS.gene074183.t1 MTR_1g095650 96.652 448 14 1 1 447 1 448 0.0 895
MS.gene074183.t1 MTR_1g095703 96.429 448 15 1 1 447 1 448 0.0 895
MS.gene074183.t1 MTR_4g014810 95.302 447 21 0 1 447 1 447 0.0 891
MS.gene074183.t1 MTR_1g013680 95.227 440 18 1 1 437 1 440 0.0 865
MS.gene074183.t1 MTR_1g085410 81.336 434 81 0 1 434 1 434 0.0 739
MS.gene074183.t1 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 726
MS.gene074183.t1 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 724
MS.gene074183.t1 MTR_1g024175 78.802 434 92 0 1 434 1 434 0.0 724
MS.gene074183.t1 MTR_8g014590 77.951 449 96 2 1 446 1 449 0.0 713
MS.gene074183.t1 MTR_1g095650 95.965 347 13 1 102 447 1 347 0.0 688
MS.gene074183.t1 MTR_2g082730 70.682 440 112 2 1 438 1 425 0.0 639
MS.gene074183.t1 MTR_5g037350 66.383 470 121 1 3 435 13 482 0.0 629
MS.gene074183.t1 MTR_1g089520 69.406 438 116 3 4 440 5 425 0.0 623
MS.gene074183.t1 MTR_2g082665 65.682 440 108 2 1 438 1 399 0.0 581
MS.gene074183.t1 MTR_2g037420 63.053 452 121 4 1 447 1 411 0.0 558
MS.gene074183.t1 MTR_2g080210 64.368 435 119 4 1 432 1 402 0.0 549
MS.gene074183.t1 MTR_8g013910 63.029 449 131 5 1 433 1 430 0.0 546
MS.gene074183.t1 MTR_8g008740 78.154 325 70 1 1 324 1 325 0.0 538
MS.gene074183.t1 MTR_1g112460 64.094 298 65 4 155 446 1 262 3.93e-124 362
MS.gene074183.t1 MTR_1g495735 74.129 201 42 1 240 430 106 306 3.35e-99 299
MS.gene074183.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 4.80e-17 82.0
MS.gene074183.t1 MTR_6g080420 37.731 432 255 6 5 428 89 514 1.21e-96 300
MS.gene074183.t1 MTR_8g106700 37.731 432 259 6 4 429 49 476 1.45e-93 291
MS.gene074183.t1 MTR_8g106700 37.731 432 259 6 4 429 43 470 2.18e-93 290
MS.gene074183.t1 MTR_8g106700 37.731 432 259 6 4 429 70 497 4.03e-93 290
MS.gene074183.t1 MTR_8g087950 35.566 433 270 6 7 433 275 704 2.05e-90 289
MS.gene074183.t1 MTR_8g087950 35.566 433 270 6 7 433 348 777 1.09e-89 289
MS.gene074183.t1 MTR_1g101880 86.364 154 21 0 1 154 1 154 1.19e-89 273
MS.gene074183.t1 MTR_4g054970 55.372 242 79 4 193 431 50 265 2.03e-79 248
MS.gene074183.t1 MTR_4g054970 77.273 44 10 0 1 44 1 44 4.58e-13 69.7
MS.gene074183.t1 MTR_1g024165 81.884 138 25 0 8 145 12 149 1.95e-78 240
MS.gene074183.t1 MTR_8g014950 75.490 102 25 0 3 104 4 105 2.57e-47 158
MS.gene074183.t1 MTR_7g094460 30.227 440 243 14 3 429 59 447 1.67e-45 164
MS.gene074183.t1 MTR_7g098190 53.892 167 51 5 56 220 10 152 1.17e-42 149
MS.gene074183.t1 MTR_3g076660 30.631 444 247 15 3 429 88 487 5.23e-42 155
MS.gene074183.t1 MTR_2g021300 29.385 439 248 12 3 429 46 434 1.09e-41 153
MS.gene074183.t1 MTR_8g014960 62.195 82 31 0 213 294 2 83 2.88e-27 107
MS.gene074183.t1 MTR_3g097250 26.103 272 144 9 9 272 85 307 2.92e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074183.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene074183.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene074183.t1 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene074183.t1 AT1G07920 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene074183.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene074183.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene074183.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene074183.t1 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene074183.t1 AT1G07930 95.516 446 20 0 1 446 1 446 0.0 890
MS.gene074183.t1 AT1G07930 98.824 255 3 0 1 255 1 255 0.0 530
MS.gene074183.t1 AT1G07930 90.517 116 11 0 331 446 254 369 1.79e-68 223
MS.gene074183.t1 AT1G18070 37.412 425 258 5 5 424 99 520 6.59e-94 293
MS.gene074183.t1 AT1G18070 37.412 425 258 5 5 424 99 520 6.59e-94 293
MS.gene074183.t1 AT1G18070 36.697 436 257 6 5 424 99 531 1.04e-90 285
MS.gene074183.t1 AT5G10630 35.765 425 265 5 7 426 239 660 1.84e-90 288
MS.gene074183.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.88e-90 288
MS.gene074183.t1 AT5G10630 35.765 425 265 5 7 426 240 661 1.88e-90 288
MS.gene074183.t1 AT5G10630 35.765 425 265 5 7 426 310 731 9.81e-90 288
MS.gene074183.t1 AT5G10630 35.765 425 265 5 7 426 315 736 1.10e-89 288
MS.gene074183.t1 AT1G35550 77.885 104 23 0 335 438 1 104 5.60e-54 176
MS.gene074183.t1 AT4G20360 30.594 438 255 10 3 429 75 474 1.27e-44 162
MS.gene074183.t1 AT4G20360 30.594 438 255 10 3 429 75 474 1.27e-44 162
MS.gene074183.t1 AT4G02930 29.977 437 249 13 3 429 63 452 2.02e-44 161
MS.gene074183.t1 AT2G31060 25.000 264 160 8 9 263 61 295 1.60e-12 70.1
MS.gene074183.t1 AT2G31060 24.615 260 162 7 9 263 61 291 2.25e-11 66.6
MS.gene074183.t1 AT5G08650 27.037 270 144 10 9 272 88 310 2.46e-11 66.2
MS.gene074183.t1 AT5G08650 27.037 270 144 10 9 272 88 310 2.73e-11 66.2

Find 136 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGGTATGGTTGTGACTTT+TGG 0.190241 6.1:+5400824 MS.gene074183:CDS
GGCTTGTCTGTGGGTCTCTT+TGG 0.228629 6.1:-5400716 None:intergenic
GTTGTGACATTACTTCTTCT+TGG 0.266998 6.1:-5401371 None:intergenic
GGCAGCAGCCTTTGTGACCT+TGG 0.325868 6.1:-5401350 None:intergenic
GCTCTCACTGAAGCTCTTCC+AGG 0.343392 6.1:+5400896 MS.gene074183:CDS
GTCTCTTTGGCTCGTTGATC+TGG 0.343863 6.1:-5400703 None:intergenic
TTGCAAGATGTTTACAAGAT+TGG 0.346171 6.1:+5400752 MS.gene074183:CDS
TTCATCAAGAACATGATTAC+TGG 0.350652 6.1:+5400065 MS.gene074183:CDS
CATATCAACATTGTCGTCAT+TGG 0.354281 6.1:+5399792 MS.gene074183:CDS
GTTTACAAGATTGGTGGTAT+TGG 0.363154 6.1:+5400761 MS.gene074183:CDS
AAGTTGGCAGCTTCCTTGGC+AGG 0.382611 6.1:-5401001 None:intergenic
GCTCTTCTTGCATTTACTCT+TGG 0.389052 6.1:+5400182 MS.gene074183:CDS
AGTGAAGTTGGCAGCTTCCT+TGG 0.410082 6.1:-5401005 None:intergenic
CATGTTGTCGCCTTCAAATC+CGG 0.418140 6.1:-5400621 None:intergenic
ACCTGGCCTTCGAGTACTTA+GGG 0.418829 6.1:-5400517 None:intergenic
ACCAGATCGCCTGTCAATCT+TGG 0.419719 6.1:-5401134 None:intergenic
GTTCCCATCTCCGGATTTGA+AGG 0.422459 6.1:+5400611 MS.gene074183:CDS
TTCCTTGGCAGGGTCATCCT+TGG 0.427055 6.1:-5400990 None:intergenic
ATTCCCTTTGTTCCCATCTC+CGG 0.428420 6.1:+5400602 MS.gene074183:CDS
AAGCCTGAGGGGCTTGTCTG+TGG 0.432212 6.1:-5400726 None:intergenic
TCTGGAAAATCAACAACAAC+TGG 0.436226 6.1:+5399825 MS.gene074183:CDS
AGCCTGAGGGGCTTGTCTGT+GGG 0.440652 6.1:-5400725 None:intergenic
ATGGGTTCTTGACAAACTTA+AGG 0.442151 6.1:+5399944 MS.gene074183:CDS
TATCCGTTTCCGATCTGTCC+AGG 0.445786 6.1:-5401052 None:intergenic
CCGGTCTCAACACGTCCAAC+TGG 0.449484 6.1:-5400791 None:intergenic
GGCAGGGTCATCCTTGGAGT+TGG 0.452433 6.1:-5400984 None:intergenic
GGTCTCAACCACCATGGGCT+TGG 0.458699 6.1:-5401224 None:intergenic
CTTATCATTGACTCCACCAC+TGG 0.461752 6.1:+5400113 MS.gene074183:CDS
CTCAACCACCATGGGCTTGG+TGG 0.468734 6.1:-5401221 None:intergenic
ACCAAGATTGACAGGCGATC+TGG 0.474566 6.1:+5401133 MS.gene074183:CDS
CAAGATGTTTACAAGATTGG+TGG 0.475647 6.1:+5400755 MS.gene074183:CDS
TAAGAACAGCACAATCAGCC+TGG 0.478298 6.1:-5400094 None:intergenic
AGCCTTTGTGACCTTGGCTC+CGG 0.480538 6.1:-5401344 None:intergenic
CTTCACGATTTCATCGTACC+TGG 0.484982 6.1:-5400534 None:intergenic
CTTAAGGCTGAGCGTGAAAG+AGG 0.490014 6.1:+5399960 MS.gene074183:CDS
GTCATTGGACATGTCGACTC+TGG 0.490675 6.1:+5399807 MS.gene074183:CDS
CACCCTGGACAGATCGGAAA+CGG 0.491987 6.1:+5401049 MS.gene074183:CDS
GTCGCCTTCAAATCCGGAGA+TGG 0.496717 6.1:-5400615 None:intergenic
AGTTTCATCCTACTTGAAGA+AGG 0.496964 6.1:+5400559 MS.gene074183:CDS
TCCAAAAGTCACAACCATAC+CGG 0.497778 6.1:-5400825 None:intergenic
CATCAAGGCTGTGGAGAAGA+AGG 0.501366 6.1:+5401315 MS.gene074183:CDS
CACCAACCTTGACTGGTACA+AGG 0.502465 6.1:+5400655 MS.gene074183:CDS
TCATCCTACTTGAAGAAGGT+TGG 0.505639 6.1:+5400563 MS.gene074183:CDS
AACTTGTTACCAAGATTGAC+AGG 0.511236 6.1:+5401125 MS.gene074183:CDS
GACCCACAGACAAGCCCCTC+AGG 0.515484 6.1:+5400723 MS.gene074183:CDS
GAGCCTAAGTTCTTGAAGAA+TGG 0.517492 6.1:+5401172 MS.gene074183:CDS
GATTGACAGGCGATCTGGTA+AGG 0.518046 6.1:+5401138 MS.gene074183:CDS
CTTGTACCAGTCAAGGTTGG+TGG 0.518944 6.1:-5400654 None:intergenic
TACCTGGCCTTCGAGTACTT+AGG 0.520657 6.1:-5400518 None:intergenic
ATCATTGACTCCACCACTGG+TGG 0.521304 6.1:+5400116 MS.gene074183:CDS
AGAGGTCCACCAACCTTGAC+TGG 0.523105 6.1:+5400648 MS.gene074183:CDS
TCACCATTCTTCAAGAACTT+AGG 0.524504 6.1:-5401175 None:intergenic
TTGAATCCGACATTGTCTCC+TGG 0.526013 6.1:-5400914 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.529820 6.1:-5401220 None:intergenic
AATCCGGAGATGGGAACAAA+GGG 0.531601 6.1:-5400605 None:intergenic
AGCGTTCATTCAAGTACGCA+TGG 0.534658 6.1:+5399925 MS.gene074183:CDS
CCAAAAGTCACAACCATACC+GGG 0.540748 6.1:-5400824 None:intergenic
GATGACTTGGGAAGTGAAGT+TGG 0.546093 6.1:-5401017 None:intergenic
TCCCTTGTACCAGTCAAGGT+TGG 0.546130 6.1:-5400657 None:intergenic
ATGCAAGAAGAGCGTGCTCA+CGG 0.549857 6.1:-5400172 None:intergenic
CGGTATTGTGAAGCCCGGTA+TGG 0.551104 6.1:+5400811 MS.gene074183:CDS
CCCCTAAGTACTCGAAGGCC+AGG 0.553487 6.1:+5400516 MS.gene074183:CDS
TCGCCTTCAAATCCGGAGAT+GGG 0.554334 6.1:-5400614 None:intergenic
TTCTTGAAGAATGGTGATGC+TGG 0.554703 6.1:+5401181 MS.gene074183:CDS
TGCACAGTCATTGATGCACC+TGG 0.556287 6.1:+5400032 MS.gene074183:CDS
ATCTTGCAATGGAAGCCTGA+GGG 0.556985 6.1:-5400738 None:intergenic
TGTTGCTGTTGGTGTCATCA+AGG 0.557300 6.1:+5401300 MS.gene074183:CDS
CATACCGGGCTTCACAATAC+CGG 0.558131 6.1:-5400810 None:intergenic
ACCAACCTTGACTGGTACAA+GGG 0.559612 6.1:+5400656 MS.gene074183:CDS
TTGATGAAATCACGATGTCC+AGG 0.561637 6.1:-5400050 None:intergenic
GTAACCAACCTTCTTCAAGT+AGG 0.562921 6.1:-5400567 None:intergenic
GCAAAGGTCTCAACCACCAT+GGG 0.563446 6.1:-5401229 None:intergenic
AGTTGGCAGCTTCCTTGGCA+GGG 0.564600 6.1:-5401000 None:intergenic
GGTGGTTCATGATGATGACT+TGG 0.569890 6.1:-5401030 None:intergenic
AGCTTCAAAACCACCAGTGG+TGG 0.571917 6.1:-5400126 None:intergenic
AAATCCGGAGATGGGAACAA+AGG 0.575106 6.1:-5400606 None:intergenic
TTGGTCCCTTGTACCAGTCA+AGG 0.575920 6.1:-5400661 None:intergenic
GACTGTGCAGTAGTACTTGG+TGG 0.578462 6.1:-5400018 None:intergenic
TGCAAGAAGAGCGTGCTCAC+GGG 0.579779 6.1:-5400171 None:intergenic
TGTTAAGAATGTTGCTGTGA+AGG 0.579878 6.1:+5400937 MS.gene074183:CDS
AGTTTAAGACATCATGGGAA+AGG 0.580665 6.1:+5399761 None:intergenic
ATGAACCACCCTGGACAGAT+CGG 0.581582 6.1:+5401043 MS.gene074183:CDS
CATGATTACTGGAACCTCCC+AGG 0.581850 6.1:+5400076 MS.gene074183:CDS
TCAAGAGCCTCAAGAAGAGT+TGG 0.584894 6.1:-5400680 None:intergenic
GAAGGATCCTACCGGAGCCA+AGG 0.587221 6.1:+5401333 MS.gene074183:CDS
ATCCGTTTCCGATCTGTCCA+GGG 0.587827 6.1:-5401051 None:intergenic
AACTTCAGTTGTCAAACCAG+TGG 0.589445 6.1:-5400849 None:intergenic
AATGACTGTGCAGTAGTACT+TGG 0.591989 6.1:-5400021 None:intergenic
GAAGCTGGTATCTCTAAGGA+TGG 0.592030 6.1:+5400143 MS.gene074183:CDS
CCAGTTGGACGTGTTGAGAC+CGG 0.592088 6.1:+5400791 MS.gene074183:CDS
ATCTTGTAAACATCTTGCAA+TGG 0.592677 6.1:-5400749 None:intergenic
TTTGCTGAATATCCTCCACT+TGG 0.598309 6.1:+5401247 MS.gene074183:CDS
GAGGTGTGACAATCAAGCAC+TGG 0.601945 6.1:-5401079 None:intergenic
GGTCACTTGATCTACAAGCT+AGG 0.604596 6.1:+5399846 MS.gene074183:CDS
TTTCCACAAGGCAATATCGA+TGG 0.606438 6.1:-5399988 None:intergenic
AAGAACAGCACAATCAGCCT+GGG 0.607202 6.1:-5400093 None:intergenic
TGTTGGTGTCATCAAGGCTG+TGG 0.608422 6.1:+5401306 MS.gene074183:CDS
GATGGTTCCCACCAAGCCCA+TGG 0.611182 6.1:+5401213 MS.gene074183:CDS
GCGTTCATTCAAGTACGCAT+GGG 0.615188 6.1:+5399926 MS.gene074183:CDS
ACTTCAGTTGTCAAACCAGT+GGG 0.615673 6.1:-5400848 None:intergenic
AGCAAAGGTCTCAACCACCA+TGG 0.617611 6.1:-5401230 None:intergenic
CTCCAAGGATGACCCTGCCA+AGG 0.619064 6.1:+5400988 MS.gene074183:CDS
ATGCGTCAAACTGTTGCTGT+TGG 0.619748 6.1:+5401289 MS.gene074183:CDS
GTGGAGAAGAAGGATCCTAC+CGG 0.623203 6.1:+5401325 MS.gene074183:CDS
GAGACCGGTATTGTGAAGCC+CGG 0.625104 6.1:+5400806 MS.gene074183:CDS
TTTGTGACCTTGGCTCCGGT+AGG 0.627427 6.1:-5401340 None:intergenic
TCTTGCAATGGAAGCCTGAG+GGG 0.631058 6.1:-5400737 None:intergenic
AAGGCGACAACATGATTGAG+AGG 0.632475 6.1:+5400630 MS.gene074183:CDS
CAAGGGACCAACTCTTCTTG+AGG 0.634066 6.1:+5400673 MS.gene074183:CDS
ATCTGGTAAGGAGATTGAGA+AGG 0.634092 6.1:+5401150 MS.gene074183:CDS
GATGATCTGTTGTTGTAACA+AGG 0.635291 6.1:+5400214 MS.gene074183:CDS
GTCATCATCATGAACCACCC+TGG 0.635348 6.1:+5401034 MS.gene074183:CDS
TGATGCTGGTATCATTAAGA+TGG 0.636151 6.1:+5401195 MS.gene074183:CDS
TGTGATCGAGAGATTCGAGA+AGG 0.638590 6.1:+5399884 MS.gene074183:CDS
CCTGGCCTTCGAGTACTTAG+GGG 0.644615 6.1:-5400516 None:intergenic
CACTTGATCTACAAGCTAGG+AGG 0.645428 6.1:+5399849 MS.gene074183:CDS
TTACCATCGATATTGCCTTG+TGG 0.647445 6.1:+5399985 MS.gene074183:CDS
GGTATTGGAACTGTGCCAGT+TGG 0.649080 6.1:+5400776 MS.gene074183:CDS
GCTCTTCCAGGAGACAATGT+CGG 0.651488 6.1:+5400908 MS.gene074183:CDS
TTTCGTAGCATCCAACTCCA+AGG 0.653237 6.1:+5400973 MS.gene074183:CDS
AAACTTCACAGCAATGTGAG+AGG 0.653594 6.1:-5401098 None:intergenic
AACAGCACAATCAGCCTGGG+AGG 0.653730 6.1:-5400090 None:intergenic
CATCTTGCAATGGAAGCCTG+AGG 0.654491 6.1:-5400739 None:intergenic
ACAGCAAAACGTCCAAGTGG+AGG 0.656142 6.1:-5401259 None:intergenic
GGCCTTCGAGTACTTAGGGG+TGG 0.657553 6.1:-5400513 None:intergenic
CAGGTACGATGAAATCGTGA+AGG 0.661162 6.1:+5400535 MS.gene074183:CDS
TACCGGAGCCAAGGTCACAA+AGG 0.662726 6.1:+5401342 MS.gene074183:CDS
ACCAGCTTCAAAACCACCAG+TGG 0.669846 6.1:-5400129 None:intergenic
AAGTGGAGGATATTCAGCAA+AGG 0.671437 6.1:-5401245 None:intergenic
CGTTTCCGATCTGTCCAGGG+TGG 0.684114 6.1:-5401048 None:intergenic
CTGACAGCAAAACGTCCAAG+TGG 0.689307 6.1:-5401262 None:intergenic
GTGGTTCATGATGATGACTT+GGG 0.690284 6.1:-5401029 None:intergenic
TACCACCCCTAAGTACTCGA+AGG 0.691722 6.1:+5400511 MS.gene074183:CDS
GGTGGTCTCAAATTTCCACA+AGG 0.697133 6.1:-5400000 None:intergenic
GCTGTGAAGGATCTCAAGCG+TGG 0.706441 6.1:+5400950 MS.gene074183:CDS
GGTTCCCACCAAGCCCATGG+TGG 0.716413 6.1:+5401216 MS.gene074183:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATGTTATATCTAGTTG+TGG + chr6.1:5400448-5400467 MS.gene074183:intron 20.0%
!!! TTTCAATATTTTGTTTCAGA+TGG + chr6.1:5400484-5400503 MS.gene074183:intron 20.0%
ATCTTGTAAACATCTTGCAA+TGG - chr6.1:5400752-5400771 None:intergenic 30.0%
TTCATCAAGAACATGATTAC+TGG + chr6.1:5400065-5400084 MS.gene074183:CDS 30.0%
TTGCAAGATGTTTACAAGAT+TGG + chr6.1:5400752-5400771 MS.gene074183:CDS 30.0%
! TACTAAATATGTTGAGTTGC+AGG + chr6.1:5400282-5400301 MS.gene074183:intron 30.0%
AGTTTCATCCTACTTGAAGA+AGG + chr6.1:5400559-5400578 MS.gene074183:CDS 35.0%
ATGGGTTCTTGACAAACTTA+AGG + chr6.1:5399944-5399963 MS.gene074183:CDS 35.0%
CAAGATGTTTACAAGATTGG+TGG + chr6.1:5400755-5400774 MS.gene074183:CDS 35.0%
CATATCAACATTGTCGTCAT+TGG + chr6.1:5399792-5399811 MS.gene074183:CDS 35.0%
GATGATCTGTTGTTGTAACA+AGG + chr6.1:5400214-5400233 MS.gene074183:CDS 35.0%
TCACCATTCTTCAAGAACTT+AGG - chr6.1:5401178-5401197 None:intergenic 35.0%
TCTGGAAAATCAACAACAAC+TGG + chr6.1:5399825-5399844 MS.gene074183:CDS 35.0%
TGATGCTGGTATCATTAAGA+TGG + chr6.1:5401195-5401214 MS.gene074183:CDS 35.0%
TGTTAAGAATGTTGCTGTGA+AGG + chr6.1:5400937-5400956 MS.gene074183:CDS 35.0%
! GAACAAAGGGAATTTTGTCT+GGG - chr6.1:5400595-5400614 None:intergenic 35.0%
! GTTTACAAGATTGGTGGTAT+TGG + chr6.1:5400761-5400780 MS.gene074183:CDS 35.0%
!! AACTTGTTACCAAGATTGAC+AGG + chr6.1:5401125-5401144 MS.gene074183:CDS 35.0%
!!! TTTTGAAGCTGGTATCTCTA+AGG + chr6.1:5400139-5400158 MS.gene074183:CDS 35.0%
AAACTTCACAGCAATGTGAG+AGG - chr6.1:5401101-5401120 None:intergenic 40.0%
AACTTCAGTTGTCAAACCAG+TGG - chr6.1:5400852-5400871 None:intergenic 40.0%
AAGTGGAGGATATTCAGCAA+AGG - chr6.1:5401248-5401267 None:intergenic 40.0%
AATGACTGTGCAGTAGTACT+TGG - chr6.1:5400024-5400043 None:intergenic 40.0%
ACTTCAGTTGTCAAACCAGT+GGG - chr6.1:5400851-5400870 None:intergenic 40.0%
ATCTGGTAAGGAGATTGAGA+AGG + chr6.1:5401150-5401169 MS.gene074183:CDS 40.0%
CTAGTTGTGGATTCTGACTT+TGG + chr6.1:5400461-5400480 MS.gene074183:intron 40.0%
GAGCCTAAGTTCTTGAAGAA+TGG + chr6.1:5401172-5401191 MS.gene074183:CDS 40.0%
GCTCTTCTTGCATTTACTCT+TGG + chr6.1:5400182-5400201 MS.gene074183:CDS 40.0%
GTAACCAACCTTCTTCAAGT+AGG - chr6.1:5400570-5400589 None:intergenic 40.0%
TCATCCTACTTGAAGAAGGT+TGG + chr6.1:5400563-5400582 MS.gene074183:CDS 40.0%
TCCAAAAGTCACAACCATAC+CGG - chr6.1:5400828-5400847 None:intergenic 40.0%
TTACCATCGATATTGCCTTG+TGG + chr6.1:5399985-5400004 MS.gene074183:CDS 40.0%
TTGATGAAATCACGATGTCC+AGG - chr6.1:5400053-5400072 None:intergenic 40.0%
TTTCCACAAGGCAATATCGA+TGG - chr6.1:5399991-5400010 None:intergenic 40.0%
TTTGCTGAATATCCTCCACT+TGG + chr6.1:5401247-5401266 MS.gene074183:CDS 40.0%
! GGAACAAAGGGAATTTTGTC+TGG - chr6.1:5400596-5400615 None:intergenic 40.0%
! GTGGTTCATGATGATGACTT+GGG - chr6.1:5401032-5401051 None:intergenic 40.0%
! TTCTTGAAGAATGGTGATGC+TGG + chr6.1:5401181-5401200 MS.gene074183:CDS 40.0%
!! TGACTTGCTGATTCTGACTT+TGG + chr6.1:5400370-5400389 MS.gene074183:intron 40.0%
AAATCCGGAGATGGGAACAA+AGG - chr6.1:5400609-5400628 None:intergenic 45.0%
AAGAACAGCACAATCAGCCT+GGG - chr6.1:5400096-5400115 None:intergenic 45.0%
AAGGCGACAACATGATTGAG+AGG + chr6.1:5400630-5400649 MS.gene074183:CDS 45.0%
AATCCGGAGATGGGAACAAA+GGG - chr6.1:5400608-5400627 None:intergenic 45.0%
ACCAACCTTGACTGGTACAA+GGG + chr6.1:5400656-5400675 MS.gene074183:CDS 45.0%
AGCGTTCATTCAAGTACGCA+TGG + chr6.1:5399925-5399944 MS.gene074183:CDS 45.0%
ATCTTGCAATGGAAGCCTGA+GGG - chr6.1:5400741-5400760 None:intergenic 45.0%
ATGCGTCAAACTGTTGCTGT+TGG + chr6.1:5401289-5401308 MS.gene074183:CDS 45.0%
ATTCCCTTTGTTCCCATCTC+CGG + chr6.1:5400602-5400621 MS.gene074183:CDS 45.0%
CACTTGATCTACAAGCTAGG+AGG + chr6.1:5399849-5399868 MS.gene074183:CDS 45.0%
CAGGTACGATGAAATCGTGA+AGG + chr6.1:5400535-5400554 MS.gene074183:CDS 45.0%
CATGTTGTCGCCTTCAAATC+CGG - chr6.1:5400624-5400643 None:intergenic 45.0%
CCAAAAGTCACAACCATACC+GGG - chr6.1:5400827-5400846 None:intergenic 45.0%
CTTCACGATTTCATCGTACC+TGG - chr6.1:5400537-5400556 None:intergenic 45.0%
GCGTTCATTCAAGTACGCAT+GGG + chr6.1:5399926-5399945 MS.gene074183:CDS 45.0%
GGTCACTTGATCTACAAGCT+AGG + chr6.1:5399846-5399865 MS.gene074183:CDS 45.0%
GGTGGTCTCAAATTTCCACA+AGG - chr6.1:5400003-5400022 None:intergenic 45.0%
TAAGAACAGCACAATCAGCC+TGG - chr6.1:5400097-5400116 None:intergenic 45.0%
TCAAGAGCCTCAAGAAGAGT+TGG - chr6.1:5400683-5400702 None:intergenic 45.0%
TGTGATCGAGAGATTCGAGA+AGG + chr6.1:5399884-5399903 MS.gene074183:CDS 45.0%
TTGAATCCGACATTGTCTCC+TGG - chr6.1:5400917-5400936 None:intergenic 45.0%
TTTCGTAGCATCCAACTCCA+AGG + chr6.1:5400973-5400992 MS.gene074183:CDS 45.0%
! GAAGCTGGTATCTCTAAGGA+TGG + chr6.1:5400143-5400162 MS.gene074183:CDS 45.0%
! GATGACTTGGGAAGTGAAGT+TGG - chr6.1:5401020-5401039 None:intergenic 45.0%
! GGTGGTTCATGATGATGACT+TGG - chr6.1:5401033-5401052 None:intergenic 45.0%
!! ACTTGGACGTTTTGCTGTCA+GGG + chr6.1:5401264-5401283 MS.gene074183:CDS 45.0%
!! CTTATCATTGACTCCACCAC+TGG + chr6.1:5400113-5400132 MS.gene074183:CDS 45.0%
!! TGTTGCTGTTGGTGTCATCA+AGG + chr6.1:5401300-5401319 MS.gene074183:CDS 45.0%
ACAGCAAAACGTCCAAGTGG+AGG - chr6.1:5401262-5401281 None:intergenic 50.0%
ACCAAGATTGACAGGCGATC+TGG + chr6.1:5401133-5401152 MS.gene074183:CDS 50.0%
ACCAGATCGCCTGTCAATCT+TGG - chr6.1:5401137-5401156 None:intergenic 50.0%
ACCAGCTTCAAAACCACCAG+TGG - chr6.1:5400132-5400151 None:intergenic 50.0%
AGCAAAGGTCTCAACCACCA+TGG - chr6.1:5401233-5401252 None:intergenic 50.0%
AGCTTCAAAACCACCAGTGG+TGG - chr6.1:5400129-5400148 None:intergenic 50.0%
AGTGAAGTTGGCAGCTTCCT+TGG - chr6.1:5401008-5401027 None:intergenic 50.0%
ATCCGTTTCCGATCTGTCCA+GGG - chr6.1:5401054-5401073 None:intergenic 50.0%
ATGAACCACCCTGGACAGAT+CGG + chr6.1:5401043-5401062 MS.gene074183:CDS 50.0%
CAAGGGACCAACTCTTCTTG+AGG + chr6.1:5400673-5400692 MS.gene074183:CDS 50.0%
CACCAACCTTGACTGGTACA+AGG + chr6.1:5400655-5400674 MS.gene074183:CDS 50.0%
CATACCGGGCTTCACAATAC+CGG - chr6.1:5400813-5400832 None:intergenic 50.0%
CATCAAGGCTGTGGAGAAGA+AGG + chr6.1:5401315-5401334 MS.gene074183:CDS 50.0%
CATCTTGCAATGGAAGCCTG+AGG - chr6.1:5400742-5400761 None:intergenic 50.0%
CATGATTACTGGAACCTCCC+AGG + chr6.1:5400076-5400095 MS.gene074183:CDS 50.0%
CTGACAGCAAAACGTCCAAG+TGG - chr6.1:5401265-5401284 None:intergenic 50.0%
CTTAAGGCTGAGCGTGAAAG+AGG + chr6.1:5399960-5399979 MS.gene074183:CDS 50.0%
CTTGTACCAGTCAAGGTTGG+TGG - chr6.1:5400657-5400676 None:intergenic 50.0%
GACTGTGCAGTAGTACTTGG+TGG - chr6.1:5400021-5400040 None:intergenic 50.0%
GAGGTGTGACAATCAAGCAC+TGG - chr6.1:5401082-5401101 None:intergenic 50.0%
GATTGACAGGCGATCTGGTA+AGG + chr6.1:5401138-5401157 MS.gene074183:CDS 50.0%
GCAAAGGTCTCAACCACCAT+GGG - chr6.1:5401232-5401251 None:intergenic 50.0%
GCTCTTCCAGGAGACAATGT+CGG + chr6.1:5400908-5400927 MS.gene074183:CDS 50.0%
GTCATCATCATGAACCACCC+TGG + chr6.1:5401034-5401053 MS.gene074183:CDS 50.0%
GTGGAGAAGAAGGATCCTAC+CGG + chr6.1:5401325-5401344 MS.gene074183:CDS 50.0%
GTTCCCATCTCCGGATTTGA+AGG + chr6.1:5400611-5400630 MS.gene074183:CDS 50.0%
TACCACCCCTAAGTACTCGA+AGG + chr6.1:5400511-5400530 MS.gene074183:CDS 50.0%
TATCCGTTTCCGATCTGTCC+AGG - chr6.1:5401055-5401074 None:intergenic 50.0%
TCCCTTGTACCAGTCAAGGT+TGG - chr6.1:5400660-5400679 None:intergenic 50.0%
TCGCCTTCAAATCCGGAGAT+GGG - chr6.1:5400617-5400636 None:intergenic 50.0%
TCTTGCAATGGAAGCCTGAG+GGG - chr6.1:5400740-5400759 None:intergenic 50.0%
TGCACAGTCATTGATGCACC+TGG + chr6.1:5400032-5400051 MS.gene074183:CDS 50.0%
TTGGTCCCTTGTACCAGTCA+AGG - chr6.1:5400664-5400683 None:intergenic 50.0%
! ACCTGGCCTTCGAGTACTTA+GGG - chr6.1:5400520-5400539 None:intergenic 50.0%
! ATGCAAGAAGAGCGTGCTCA+CGG - chr6.1:5400175-5400194 None:intergenic 50.0%
! CCCGGTATGGTTGTGACTTT+TGG + chr6.1:5400824-5400843 MS.gene074183:CDS 50.0%
! GGTATTGGAACTGTGCCAGT+TGG + chr6.1:5400776-5400795 MS.gene074183:CDS 50.0%
! GTCTCTTTGGCTCGTTGATC+TGG - chr6.1:5400706-5400725 None:intergenic 50.0%
! GTTGTGACTTTTGGACCCAC+TGG + chr6.1:5400833-5400852 MS.gene074183:CDS 50.0%
! TACCTGGCCTTCGAGTACTT+AGG - chr6.1:5400521-5400540 None:intergenic 50.0%
!! ATCATTGACTCCACCACTGG+TGG + chr6.1:5400116-5400135 MS.gene074183:CDS 50.0%
!! CACTTGGACGTTTTGCTGTC+AGG + chr6.1:5401263-5401282 MS.gene074183:CDS 50.0%
!! GTCATTGGACATGTCGACTC+TGG + chr6.1:5399807-5399826 MS.gene074183:CDS 50.0%
!! TGTTGGTGTCATCAAGGCTG+TGG + chr6.1:5401306-5401325 MS.gene074183:CDS 50.0%
!!! ACCACTGGTGGTTTTGAAGC+TGG + chr6.1:5400128-5400147 MS.gene074183:CDS 50.0%
AACAGCACAATCAGCCTGGG+AGG - chr6.1:5400093-5400112 None:intergenic 55.0%
AAGTTGGCAGCTTCCTTGGC+AGG - chr6.1:5401004-5401023 None:intergenic 55.0%
AGAGGTCCACCAACCTTGAC+TGG + chr6.1:5400648-5400667 MS.gene074183:CDS 55.0%
AGCCTTTGTGACCTTGGCTC+CGG - chr6.1:5401347-5401366 None:intergenic 55.0%
AGTTGGCAGCTTCCTTGGCA+GGG - chr6.1:5401003-5401022 None:intergenic 55.0%
CACCCTGGACAGATCGGAAA+CGG + chr6.1:5401049-5401068 MS.gene074183:CDS 55.0%
CCAGTTGGACGTGTTGAGAC+CGG + chr6.1:5400791-5400810 MS.gene074183:CDS 55.0%
CGGTATTGTGAAGCCCGGTA+TGG + chr6.1:5400811-5400830 MS.gene074183:CDS 55.0%
GAGACCGGTATTGTGAAGCC+CGG + chr6.1:5400806-5400825 MS.gene074183:CDS 55.0%
GCTCTCACTGAAGCTCTTCC+AGG + chr6.1:5400896-5400915 MS.gene074183:CDS 55.0%
GCTGTGAAGGATCTCAAGCG+TGG + chr6.1:5400950-5400969 MS.gene074183:CDS 55.0%
GGCTTGTCTGTGGGTCTCTT+TGG - chr6.1:5400719-5400738 None:intergenic 55.0%
GTCGCCTTCAAATCCGGAGA+TGG - chr6.1:5400618-5400637 None:intergenic 55.0%
TACCGGAGCCAAGGTCACAA+AGG + chr6.1:5401342-5401361 MS.gene074183:CDS 55.0%
TTCCTTGGCAGGGTCATCCT+TGG - chr6.1:5400993-5401012 None:intergenic 55.0%
TTTGTGACCTTGGCTCCGGT+AGG - chr6.1:5401343-5401362 None:intergenic 55.0%
! CCTGGCCTTCGAGTACTTAG+GGG - chr6.1:5400519-5400538 None:intergenic 55.0%
! TCAACCACCATGGGCTTGGT+GGG - chr6.1:5401223-5401242 None:intergenic 55.0%
! TGCAAGAAGAGCGTGCTCAC+GGG - chr6.1:5400174-5400193 None:intergenic 55.0%
AAGCCTGAGGGGCTTGTCTG+TGG - chr6.1:5400729-5400748 None:intergenic 60.0%
AGCCTGAGGGGCTTGTCTGT+GGG - chr6.1:5400728-5400747 None:intergenic 60.0%
CCCCTAAGTACTCGAAGGCC+AGG + chr6.1:5400516-5400535 MS.gene074183:CDS 60.0%
CCGGTCTCAACACGTCCAAC+TGG - chr6.1:5400794-5400813 None:intergenic 60.0%
CGTTTCCGATCTGTCCAGGG+TGG - chr6.1:5401051-5401070 None:intergenic 60.0%
CTCAACCACCATGGGCTTGG+TGG - chr6.1:5401224-5401243 None:intergenic 60.0%
CTCCAAGGATGACCCTGCCA+AGG + chr6.1:5400988-5401007 MS.gene074183:CDS 60.0%
GAAGGATCCTACCGGAGCCA+AGG + chr6.1:5401333-5401352 MS.gene074183:CDS 60.0%
GATGGTTCCCACCAAGCCCA+TGG + chr6.1:5401213-5401232 MS.gene074183:CDS 60.0%
GGCAGCAGCCTTTGTGACCT+TGG - chr6.1:5401353-5401372 None:intergenic 60.0%
GGCAGGGTCATCCTTGGAGT+TGG - chr6.1:5400987-5401006 None:intergenic 60.0%
GGCCTTCGAGTACTTAGGGG+TGG - chr6.1:5400516-5400535 None:intergenic 60.0%
GGTCTCAACCACCATGGGCT+TGG - chr6.1:5401227-5401246 None:intergenic 60.0%
GACCCACAGACAAGCCCCTC+AGG + chr6.1:5400723-5400742 MS.gene074183:CDS 65.0%
GGTTCCCACCAAGCCCATGG+TGG + chr6.1:5401216-5401235 MS.gene074183:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 5399774 5401384 5399774 ID=MS.gene074183
chr6.1 mRNA 5399774 5401384 5399774 ID=MS.gene074183.t1;Parent=MS.gene074183
chr6.1 exon 5399774 5400235 5399774 ID=MS.gene074183.t1.exon1;Parent=MS.gene074183.t1
chr6.1 CDS 5399774 5400235 5399774 ID=cds.MS.gene074183.t1;Parent=MS.gene074183.t1
chr6.1 exon 5400503 5401384 5400503 ID=MS.gene074183.t1.exon2;Parent=MS.gene074183.t1
chr6.1 CDS 5400503 5401384 5400503 ID=cds.MS.gene074183.t1;Parent=MS.gene074183.t1
Gene Sequence

>MS.gene074183

ATGGGAAAGGAAAAGATTCATATCAACATTGTCGTCATTGGACATGTCGACTCTGGAAAATCAACAACAACTGGTCACTTGATCTACAAGCTAGGAGGTATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTACGCATGGGTTCTTGACAAACTTAAGGCTGAGCGTGAAAGAGGAATTACCATCGATATTGCCTTGTGGAAATTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCACCTGGACATCGTGATTTCATCAAGAACATGATTACTGGAACCTCCCAGGCTGATTGTGCTGTTCTTATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCCGTGAGCACGCTCTTCTTGCATTTACTCTTGGAGTGAAGCAGATGATCTGTTGTTGTAACAAGGTAAATTTCGTAGATCTTTTCTATGTGTAAAATTGCAATAATTTATTACTAAATATGTTGAGTTGCAGGTTGTGAAATTAGTTACAGTCTGTTAAGTAACATCATTATAATATTATAATATTTATTTGTTATGTTGACTTGCTGATTCTGACTTTGGTATGTAGATTTTGATTTTGTTACAATCTATTGTGTATGCACATTATTTTAATTTTTTATATGTTATATCTAGTTGTGGATTCTGACTTTGGTTTCAATATTTTGTTTCAGATGGATGCTACCACCCCTAAGTACTCGAAGGCCAGGTACGATGAAATCGTGAAGGAAGTTTCATCCTACTTGAAGAAGGTTGGTTACAACCCAGACAAAATTCCCTTTGTTCCCATCTCCGGATTTGAAGGCGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTTCTTGAGGCTCTTGACCAGATCAACGAGCCAAAGAGACCCACAGACAAGCCCCTCAGGCTTCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGAACTGTGCCAGTTGGACGTGTTGAGACCGGTATTGTGAAGCCCGGTATGGTTGTGACTTTTGGACCCACTGGTTTGACAACTGAAGTTAAGTCTGTTGAGATGCATCATGAAGCTCTCACTGAAGCTCTTCCAGGAGACAATGTCGGATTCAATGTTAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTTCGTAGCATCCAACTCCAAGGATGACCCTGCCAAGGAAGCTGCCAACTTCACTTCCCAAGTCATCATCATGAACCACCCTGGACAGATCGGAAACGGATATGCTCCAGTGCTTGATTGTCACACCTCTCACATTGCTGTGAAGTTTGCTGAACTTGTTACCAAGATTGACAGGCGATCTGGTAAGGAGATTGAGAAGGAGCCTAAGTTCTTGAAGAATGGTGATGCTGGTATCATTAAGATGGTTCCCACCAAGCCCATGGTGGTTGAGACCTTTGCTGAATATCCTCCACTTGGACGTTTTGCTGTCAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGGCTGTGGAGAAGAAGGATCCTACCGGAGCCAAGGTCACAAAGGCTGCTGCCAAGAAGAAGTAA

Protein sequence

>MS.gene074183.t1

MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIVKPGMVVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAAKKK