Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65482.t1 | XP_003590003.1 | 97.1 | 417 | 8 | 1 | 1 | 413 | 1 | 417 | 1.30E-228 | 802 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65482.t1 | P0A9T4 | 45.0 | 360 | 178 | 7 | 57 | 411 | 1 | 345 | 8.2e-78 | 292.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65482.t1 | G7I4M8 | 97.1 | 417 | 8 | 1 | 1 | 413 | 1 | 417 | 9.5e-229 | 802.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049217 | MS.gene65482 | 0.81325 | 2.82E-51 | -1.69E-46 |
MS.gene049285 | MS.gene65482 | 0.809939 | 1.48E-50 | -1.69E-46 |
MS.gene049369 | MS.gene65482 | 0.803835 | 2.88E-49 | -1.69E-46 |
MS.gene049427 | MS.gene65482 | 0.877012 | 8.84E-69 | -1.69E-46 |
MS.gene049491 | MS.gene65482 | 0.840247 | 9.75E-58 | -1.69E-46 |
MS.gene049609 | MS.gene65482 | 0.80591 | 1.06E-49 | -1.69E-46 |
MS.gene049614 | MS.gene65482 | 0.810545 | 1.09E-50 | -1.69E-46 |
MS.gene049805 | MS.gene65482 | 0.843238 | 1.58E-58 | -1.69E-46 |
MS.gene050076 | MS.gene65482 | 0.804167 | 2.46E-49 | -1.69E-46 |
MS.gene050163 | MS.gene65482 | 0.81011 | 1.36E-50 | -1.69E-46 |
MS.gene050165 | MS.gene65482 | 0.801372 | 9.29E-49 | -1.69E-46 |
MS.gene050333 | MS.gene65482 | 0.841697 | 4.06E-58 | -1.69E-46 |
MS.gene050432 | MS.gene65482 | 0.832182 | 1.09E-55 | -1.69E-46 |
MS.gene050593 | MS.gene65482 | 0.830945 | 2.21E-55 | -1.69E-46 |
MS.gene050767 | MS.gene65482 | 0.858234 | 9.47E-63 | -1.69E-46 |
MS.gene050770 | MS.gene65482 | 0.862396 | 5.22E-64 | -1.69E-46 |
MS.gene050772 | MS.gene65482 | 0.831513 | 1.60E-55 | -1.69E-46 |
MS.gene050812 | MS.gene65482 | 0.844253 | 8.48E-59 | -1.69E-46 |
MS.gene05101 | MS.gene65482 | 0.812965 | 3.25E-51 | -1.69E-46 |
MS.gene05105 | MS.gene65482 | 0.815596 | 8.52E-52 | -1.69E-46 |
MS.gene051228 | MS.gene65482 | 0.850597 | 1.53E-60 | -1.69E-46 |
MS.gene051387 | MS.gene65482 | 0.828329 | 9.55E-55 | -1.69E-46 |
MS.gene051471 | MS.gene65482 | 0.81841 | 1.99E-52 | -1.69E-46 |
MS.gene051666 | MS.gene65482 | 0.832105 | 1.14E-55 | -1.69E-46 |
MS.gene052078 | MS.gene65482 | 0.810163 | 1.32E-50 | -1.69E-46 |
MS.gene052188 | MS.gene65482 | 0.826388 | 2.79E-54 | -1.69E-46 |
MS.gene052271 | MS.gene65482 | 0.837934 | 3.88E-57 | -1.69E-46 |
MS.gene052290 | MS.gene65482 | 0.810226 | 1.28E-50 | -1.69E-46 |
MS.gene052310 | MS.gene65482 | 0.869199 | 3.70E-66 | -1.69E-46 |
MS.gene052326 | MS.gene65482 | 0.804745 | 1.86E-49 | -1.69E-46 |
MS.gene052340 | MS.gene65482 | 0.813298 | 2.75E-51 | -1.69E-46 |
MS.gene052379 | MS.gene65482 | 0.847055 | 1.47E-59 | -1.69E-46 |
MS.gene052421 | MS.gene65482 | 0.826687 | 2.37E-54 | -1.69E-46 |
MS.gene052484 | MS.gene65482 | 0.824636 | 7.25E-54 | -1.69E-46 |
MS.gene052485 | MS.gene65482 | 0.802749 | 4.84E-49 | -1.69E-46 |
MS.gene052615 | MS.gene65482 | 0.801768 | 7.71E-49 | -1.69E-46 |
MS.gene052870 | MS.gene65482 | 0.835623 | 1.51E-56 | -1.69E-46 |
MS.gene052872 | MS.gene65482 | 0.820267 | 7.51E-53 | -1.69E-46 |
MS.gene053009 | MS.gene65482 | 0.822748 | 2.01E-53 | -1.69E-46 |
MS.gene053103 | MS.gene65482 | 0.839768 | 1.30E-57 | -1.69E-46 |
MS.gene053104 | MS.gene65482 | 0.843899 | 1.05E-58 | -1.69E-46 |
MS.gene053107 | MS.gene65482 | 0.805618 | 1.22E-49 | -1.69E-46 |
MS.gene053207 | MS.gene65482 | 0.808568 | 2.91E-50 | -1.69E-46 |
MS.gene053209 | MS.gene65482 | 0.801789 | 7.63E-49 | -1.69E-46 |
MS.gene053322 | MS.gene65482 | 0.863196 | 2.96E-64 | -1.69E-46 |
MS.gene053384 | MS.gene65482 | 0.898835 | 3.59E-77 | -1.69E-46 |
MS.gene054123 | MS.gene65482 | 0.814274 | 1.67E-51 | -1.69E-46 |
MS.gene054376 | MS.gene65482 | 0.851515 | 8.44E-61 | -1.69E-46 |
MS.gene054642 | MS.gene65482 | 0.830134 | 3.49E-55 | -1.69E-46 |
MS.gene054802 | MS.gene65482 | 0.820382 | 7.06E-53 | -1.69E-46 |
MS.gene054803 | MS.gene65482 | 0.822462 | 2.34E-53 | -1.69E-46 |
MS.gene054804 | MS.gene65482 | 0.822913 | 1.84E-53 | -1.69E-46 |
MS.gene054955 | MS.gene65482 | 0.8081 | 3.66E-50 | -1.69E-46 |
MS.gene05505 | MS.gene65482 | 0.82843 | 9.03E-55 | -1.69E-46 |
MS.gene055206 | MS.gene65482 | 0.837192 | 6.01E-57 | -1.69E-46 |
MS.gene055277 | MS.gene65482 | 0.810465 | 1.14E-50 | -1.69E-46 |
MS.gene055397 | MS.gene65482 | 0.864639 | 1.05E-64 | -1.69E-46 |
MS.gene055412 | MS.gene65482 | 0.866537 | 2.65E-65 | -1.69E-46 |
MS.gene055499 | MS.gene65482 | 0.817119 | 3.89E-52 | -1.69E-46 |
MS.gene055605 | MS.gene65482 | 0.802892 | 4.52E-49 | -1.69E-46 |
MS.gene055636 | MS.gene65482 | 0.845431 | 4.08E-59 | -1.69E-46 |
MS.gene055638 | MS.gene65482 | 0.817554 | 3.11E-52 | -1.69E-46 |
MS.gene055647 | MS.gene65482 | 0.849523 | 3.06E-60 | -1.69E-46 |
MS.gene055722 | MS.gene65482 | 0.827714 | 1.34E-54 | -1.69E-46 |
MS.gene055896 | MS.gene65482 | 0.807367 | 5.23E-50 | -1.69E-46 |
MS.gene05592 | MS.gene65482 | 0.843072 | 1.75E-58 | -1.69E-46 |
MS.gene055941 | MS.gene65482 | 0.812444 | 4.23E-51 | -1.69E-46 |
MS.gene056374 | MS.gene65482 | 0.820732 | 5.87E-53 | -1.69E-46 |
MS.gene056410 | MS.gene65482 | 0.80247 | 5.53E-49 | -1.69E-46 |
MS.gene056511 | MS.gene65482 | 0.804706 | 1.90E-49 | -1.69E-46 |
MS.gene056549 | MS.gene65482 | 0.819255 | 1.28E-52 | -1.69E-46 |
MS.gene056609 | MS.gene65482 | 0.868676 | 5.47E-66 | -1.69E-46 |
MS.gene056657 | MS.gene65482 | 0.802115 | 6.54E-49 | -1.69E-46 |
MS.gene056796 | MS.gene65482 | 0.809689 | 1.67E-50 | -1.69E-46 |
MS.gene056897 | MS.gene65482 | 0.839982 | 1.14E-57 | -1.69E-46 |
MS.gene057011 | MS.gene65482 | 0.872784 | 2.44E-67 | -1.69E-46 |
MS.gene057129 | MS.gene65482 | 0.853262 | 2.68E-61 | -1.69E-46 |
MS.gene057146 | MS.gene65482 | 0.821589 | 3.73E-53 | -1.69E-46 |
MS.gene057331 | MS.gene65482 | 0.843097 | 1.73E-58 | -1.69E-46 |
MS.gene05735 | MS.gene65482 | 0.809331 | 2.00E-50 | -1.69E-46 |
MS.gene057416 | MS.gene65482 | 0.845398 | 4.16E-59 | -1.69E-46 |
MS.gene057775 | MS.gene65482 | 0.802989 | 4.32E-49 | -1.69E-46 |
MS.gene057927 | MS.gene65482 | 0.800901 | 1.16E-48 | -1.69E-46 |
MS.gene058019 | MS.gene65482 | 0.835496 | 1.62E-56 | -1.69E-46 |
MS.gene058293 | MS.gene65482 | 0.855333 | 6.77E-62 | -1.69E-46 |
MS.gene058323 | MS.gene65482 | 0.801772 | 7.69E-49 | -1.69E-46 |
MS.gene058365 | MS.gene65482 | 0.816307 | 5.91E-52 | -1.69E-46 |
MS.gene058419 | MS.gene65482 | 0.808599 | 2.86E-50 | -1.69E-46 |
MS.gene058660 | MS.gene65482 | 0.838028 | 3.67E-57 | -1.69E-46 |
MS.gene058928 | MS.gene65482 | 0.803647 | 3.15E-49 | -1.69E-46 |
MS.gene058993 | MS.gene65482 | 0.805442 | 1.33E-49 | -1.69E-46 |
MS.gene059029 | MS.gene65482 | 0.835332 | 1.78E-56 | -1.69E-46 |
MS.gene059326 | MS.gene65482 | 0.83187 | 1.31E-55 | -1.69E-46 |
MS.gene05934 | MS.gene65482 | 0.824991 | 5.98E-54 | -1.69E-46 |
MS.gene059536 | MS.gene65482 | 0.845152 | 4.85E-59 | -1.69E-46 |
MS.gene059597 | MS.gene65482 | 0.828502 | 8.67E-55 | -1.69E-46 |
MS.gene05959 | MS.gene65482 | 0.817567 | 3.08E-52 | -1.69E-46 |
MS.gene059676 | MS.gene65482 | 0.872075 | 4.20E-67 | -1.69E-46 |
MS.gene059688 | MS.gene65482 | 0.830265 | 3.24E-55 | -1.69E-46 |
MS.gene059692 | MS.gene65482 | 0.842525 | 2.45E-58 | -1.69E-46 |
MS.gene059695 | MS.gene65482 | 0.844555 | 7.03E-59 | -1.69E-46 |
MS.gene059708 | MS.gene65482 | 0.806412 | 8.33E-50 | -1.69E-46 |
MS.gene059711 | MS.gene65482 | 0.81414 | 1.79E-51 | -1.69E-46 |
MS.gene059718 | MS.gene65482 | 0.801816 | 7.53E-49 | -1.69E-46 |
MS.gene059894 | MS.gene65482 | 0.819867 | 9.27E-53 | -1.69E-46 |
MS.gene059960 | MS.gene65482 | 0.898276 | 6.22E-77 | -1.69E-46 |
MS.gene060193 | MS.gene65482 | 0.818677 | 1.73E-52 | -1.69E-46 |
MS.gene060407 | MS.gene65482 | 0.809576 | 1.77E-50 | -1.69E-46 |
MS.gene060804 | MS.gene65482 | 0.857158 | 1.97E-62 | -1.69E-46 |
MS.gene060818 | MS.gene65482 | 0.882255 | 1.21E-70 | -1.69E-46 |
MS.gene06092 | MS.gene65482 | 0.807376 | 5.21E-50 | -1.69E-46 |
MS.gene061041 | MS.gene65482 | 0.832954 | 7.04E-56 | -1.69E-46 |
MS.gene061051 | MS.gene65482 | -0.820065 | 8.35E-53 | -1.69E-46 |
MS.gene061150 | MS.gene65482 | 0.822579 | 2.20E-53 | -1.69E-46 |
MS.gene061200 | MS.gene65482 | 0.876347 | 1.50E-68 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene53676 | MS.gene65482 | PPI |
MS.gene65482 | MS.gene43135 | PPI |
MS.gene65482 | MS.gene022150 | PPI |
MS.gene046213 | MS.gene65482 | PPI |
MS.gene65482 | MS.gene23854 | PPI |
MS.gene65482 | MS.gene93600 | PPI |
MS.gene65482 | MS.gene022151 | PPI |
MS.gene65482 | MS.gene56146 | PPI |
MS.gene65482 | MS.gene43134 | PPI |
MS.gene65482 | MS.gene93601 | PPI |
MS.gene56144 | MS.gene65482 | PPI |
MS.gene43133 | MS.gene65482 | PPI |
MS.gene65482 | MS.gene93616 | PPI |
MS.gene65482 | MS.gene88462 | PPI |
MS.gene65482 | MS.gene061628 | PPI |
MS.gene65482 | MS.gene93602 | PPI |
MS.gene65482 | MS.gene93623 | PPI |
MS.gene65482 | MS.gene96904 | PPI |
MS.gene65482 | MS.gene63929 | PPI |
MS.gene65482 | MS.gene23855 | PPI |
MS.gene65482 | MS.gene93729 | PPI |
MS.gene65482 | MS.gene022153 | PPI |
MS.gene65482 | MS.gene61079 | PPI |
MS.gene65482 | MS.gene062500 | PPI |
MS.gene65482 | MS.gene039628 | PPI |
MS.gene65482 | MS.gene43136 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65482.t1 | MTR_1g042730 | 97.122 | 417 | 8 | 1 | 1 | 413 | 1 | 417 | 0.0 | 838 |
MS.gene65482.t1 | MTR_8g088160 | 49.451 | 273 | 125 | 8 | 66 | 331 | 48 | 314 | 3.05e-81 | 253 |
MS.gene65482.t1 | MTR_4g015040 | 88.679 | 53 | 6 | 0 | 178 | 230 | 21 | 73 | 9.20e-30 | 110 |
MS.gene65482.t1 | MTR_7g114980 | 30.091 | 329 | 187 | 12 | 62 | 385 | 16 | 306 | 1.53e-27 | 112 |
MS.gene65482.t1 | MTR_7g114980 | 31.023 | 303 | 166 | 12 | 62 | 359 | 16 | 280 | 2.70e-26 | 107 |
MS.gene65482.t1 | MTR_1g047250 | 27.824 | 363 | 203 | 11 | 57 | 405 | 1 | 318 | 6.26e-26 | 107 |
MS.gene65482.t1 | MTR_7g114990 | 27.844 | 334 | 182 | 12 | 62 | 385 | 18 | 302 | 4.38e-25 | 105 |
MS.gene65482.t1 | MTR_7g021850 | 28.571 | 350 | 196 | 14 | 61 | 403 | 8 | 310 | 5.32e-25 | 105 |
MS.gene65482.t1 | MTR_7g115010 | 27.666 | 347 | 188 | 12 | 62 | 404 | 14 | 301 | 2.17e-23 | 100 |
MS.gene65482.t1 | MTR_7g114970 | 27.928 | 333 | 188 | 10 | 61 | 385 | 11 | 299 | 5.94e-23 | 99.4 |
MS.gene65482.t1 | MTR_7g021680 | 28.000 | 350 | 197 | 15 | 61 | 403 | 8 | 309 | 1.24e-22 | 98.2 |
MS.gene65482.t1 | MTR_7g021820 | 28.000 | 350 | 197 | 15 | 61 | 403 | 8 | 309 | 1.24e-22 | 98.2 |
MS.gene65482.t1 | MTR_7g114970 | 28.339 | 307 | 168 | 10 | 61 | 359 | 11 | 273 | 5.01e-21 | 92.8 |
MS.gene65482.t1 | MTR_7g114970 | 28.339 | 307 | 168 | 10 | 61 | 359 | 11 | 273 | 5.58e-21 | 92.8 |
MS.gene65482.t1 | MTR_1g102750 | 25.826 | 333 | 195 | 14 | 61 | 385 | 9 | 297 | 2.52e-19 | 89.0 |
MS.gene65482.t1 | MTR_1g102750 | 26.710 | 307 | 173 | 14 | 61 | 359 | 9 | 271 | 7.80e-19 | 87.0 |
MS.gene65482.t1 | MTR_3g449790 | 24.925 | 333 | 197 | 10 | 61 | 380 | 39 | 331 | 1.86e-18 | 86.7 |
MS.gene65482.t1 | MTR_3g092140 | 26.316 | 285 | 151 | 10 | 48 | 305 | 10 | 262 | 1.63e-17 | 84.7 |
MS.gene65482.t1 | MTR_3g449790 | 24.625 | 333 | 192 | 10 | 61 | 380 | 39 | 325 | 9.40e-17 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65482.t1 | AT1G04420 | 75.781 | 384 | 90 | 1 | 33 | 413 | 29 | 412 | 0.0 | 623 |
MS.gene65482.t1 | AT1G04690 | 28.916 | 332 | 198 | 8 | 57 | 384 | 1 | 298 | 1.62e-28 | 114 |
MS.gene65482.t1 | AT1G60690 | 29.143 | 350 | 194 | 13 | 61 | 403 | 11 | 313 | 8.04e-25 | 104 |
MS.gene65482.t1 | AT1G60710 | 29.513 | 349 | 194 | 14 | 61 | 403 | 11 | 313 | 9.68e-25 | 104 |
MS.gene65482.t1 | AT1G60680 | 28.107 | 338 | 193 | 11 | 61 | 391 | 11 | 305 | 7.68e-24 | 102 |
MS.gene65482.t1 | AT1G10810 | 27.507 | 349 | 201 | 12 | 61 | 403 | 11 | 313 | 1.10e-21 | 95.9 |
MS.gene65482.t1 | AT1G60750 | 28.286 | 350 | 181 | 13 | 61 | 403 | 12 | 298 | 2.75e-21 | 94.4 |
MS.gene65482.t1 | AT1G60730 | 27.714 | 350 | 199 | 14 | 61 | 403 | 11 | 313 | 4.72e-21 | 94.0 |
MS.gene65482.t1 | AT1G60730 | 27.762 | 353 | 215 | 14 | 61 | 403 | 11 | 333 | 1.52e-20 | 92.8 |
MS.gene65482.t1 | AT5G53580 | 27.507 | 349 | 184 | 16 | 56 | 385 | 36 | 334 | 2.26e-18 | 86.3 |
MS.gene65482.t1 | AT1G10810 | 29.249 | 253 | 134 | 10 | 61 | 307 | 11 | 224 | 9.36e-18 | 82.8 |
MS.gene65482.t1 | AT1G60680 | 28.862 | 246 | 133 | 9 | 61 | 302 | 11 | 218 | 7.00e-17 | 80.1 |
MS.gene65482.t1 | AT1G10810 | 27.076 | 277 | 161 | 9 | 129 | 403 | 24 | 261 | 4.71e-16 | 78.6 |
MS.gene65482.t1 | AT4G33670 | 24.791 | 359 | 211 | 13 | 57 | 409 | 4 | 309 | 2.70e-13 | 70.9 |
Find 85 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTGTGTCTCTTTCTTCAT+TGG | 0.197248 | 1.1:-26521598 | None:intergenic |
GGTCAGAGTCACCAAGTTTC+CGG | 0.264198 | 1.1:-26519684 | None:intergenic |
CAAGCAAGCTATAGCTGTTC+TGG | 0.272185 | 1.1:-26523005 | None:intergenic |
TTCTGGATACTGACAATCTT+TGG | 0.280723 | 1.1:-26522988 | None:intergenic |
GTCTCTTTCTTCATTGGAAT+CGG | 0.294986 | 1.1:-26521592 | None:intergenic |
AAGCCAATGTTGCAATTCTT+TGG | 0.310094 | 1.1:-26523842 | None:intergenic |
GATCGCTACGTTGCATTGTT+TGG | 0.310293 | 1.1:+26522422 | MS.gene65482:CDS |
GAGTGATTTCACTGATATTA+AGG | 0.318627 | 1.1:-26519705 | None:intergenic |
AGGAGTTAAACCATGTTTCT+TGG | 0.319091 | 1.1:-26524287 | None:intergenic |
CAATGTTTCAGATGACGTTT+GGG | 0.330727 | 1.1:+26520757 | MS.gene65482:intron |
CTCAATTATGCATTTGAGAA+TGG | 0.362815 | 1.1:+26520813 | MS.gene65482:CDS |
ATTCCTATGATCCTTCAAAA+TGG | 0.370091 | 1.1:+26522450 | MS.gene65482:CDS |
AATCCAAGCGCGAGCTGAAC+AGG | 0.376331 | 1.1:-26524307 | None:intergenic |
TTCTTACCCGTGAAAGTGAT+TGG | 0.390126 | 1.1:-26523982 | None:intergenic |
TGTGAGAGATCGTCCATTCA+TGG | 0.397619 | 1.1:+26524330 | MS.gene65482:CDS |
GCAATGTTTCAGATGACGTT+TGG | 0.398844 | 1.1:+26520756 | MS.gene65482:intron |
TTTCAAGAACTTATCAATGA+AGG | 0.411788 | 1.1:+26522509 | MS.gene65482:CDS |
CTAGGCGGCGGAACACTCTC+TGG | 0.422546 | 1.1:+26523881 | MS.gene65482:CDS |
ATAATTGAACTCGCCATGAA+TGG | 0.430321 | 1.1:-26524343 | None:intergenic |
ACTCCTGTTCAGCTCGCGCT+TGG | 0.430695 | 1.1:+26524304 | MS.gene65482:CDS |
TTGATTTGTTGCAAATTCAT+TGG | 0.436665 | 1.1:+26522090 | MS.gene65482:CDS |
CCATTGCAGTACCGGAAACT+TGG | 0.436754 | 1.1:+26519673 | MS.gene65482:CDS |
AGAAAAGCCTTAAGCGTCTT+GGG | 0.437982 | 1.1:+26522057 | MS.gene65482:CDS |
GTTTCAAATGAGACTTCATA+TGG | 0.438985 | 1.1:+26522925 | MS.gene65482:CDS |
TTCATGGCGAGTTCAATTAT+CGG | 0.446341 | 1.1:+26524346 | MS.gene65482:CDS |
TCTCTTTCTTCATTGGAATC+GGG | 0.450697 | 1.1:-26521591 | None:intergenic |
ATCATAGCAACAAAAGTTTG+CGG | 0.453007 | 1.1:+26521954 | MS.gene65482:CDS |
CATCCAAAGAATTGCAACAT+TGG | 0.453546 | 1.1:+26523839 | MS.gene65482:CDS |
CAATGTTGCAATTCTTTGGA+TGG | 0.454759 | 1.1:-26523838 | None:intergenic |
ATTCCTGTCATGACTTCTGC+TGG | 0.463780 | 1.1:-26524433 | None:intergenic |
AATCAATCCCAAGACGCTTA+AGG | 0.464110 | 1.1:-26522064 | None:intergenic |
GAATCTCTTCCCTGGCTACA+TGG | 0.467731 | 1.1:+26523949 | MS.gene65482:CDS |
GATATAACCAATCACTTTCA+CGG | 0.468306 | 1.1:+26523975 | MS.gene65482:CDS |
AACAATGCAACGTAGCGATC+TGG | 0.476923 | 1.1:-26522419 | None:intergenic |
TTATATCTTTCCATGTAGCC+AGG | 0.480910 | 1.1:-26523959 | None:intergenic |
TCAACAATCCATTGCAGTAC+CGG | 0.485809 | 1.1:+26519665 | MS.gene65482:CDS |
AGAGTGTTCCGCCGCCTAGT+GGG | 0.496927 | 1.1:-26523877 | None:intergenic |
CTGATCTCTATATTGCTAGC+TGG | 0.498461 | 1.1:+26521626 | MS.gene65482:CDS |
GAGAAAAGCCTTAAGCGTCT+TGG | 0.499990 | 1.1:+26522056 | MS.gene65482:CDS |
AATATCAGTGAAATCACTCT+TGG | 0.502115 | 1.1:+26519709 | MS.gene65482:CDS |
TGTTCAACAAACGGCACACT+AGG | 0.510409 | 1.1:-26522476 | None:intergenic |
CTTGAGTTGGCCAAGAAACA+TGG | 0.517065 | 1.1:+26524277 | MS.gene65482:CDS |
CCAAGTTTCCGGTACTGCAA+TGG | 0.518284 | 1.1:-26519673 | None:intergenic |
GTCATGACTTCTGCTGGTAA+AGG | 0.518717 | 1.1:-26524427 | None:intergenic |
TCCGCCGCCTAGTGGGGAAT+AGG | 0.518898 | 1.1:-26523870 | None:intergenic |
GTCCATGCAGCTAAAGTTGA+GGG | 0.519118 | 1.1:+26522961 | MS.gene65482:CDS |
TATAGTCTTTAAAGGATGCT+AGG | 0.527210 | 1.1:-26524484 | None:intergenic |
AACTATTAAGTATCTTGAGT+TGG | 0.528848 | 1.1:+26524264 | MS.gene65482:CDS |
GAGAGTGTTCCGCCGCCTAG+TGG | 0.531448 | 1.1:-26523878 | None:intergenic |
GCTTGCAACTGTTCAACAAA+CGG | 0.537666 | 1.1:-26522485 | None:intergenic |
GTACTGCAATGGATTGTTGA+TGG | 0.539963 | 1.1:-26519662 | None:intergenic |
GTCCCTCAACTTTAGCTGCA+TGG | 0.544863 | 1.1:-26522963 | None:intergenic |
TGAGACTTCATATGGGGTGA+TGG | 0.550845 | 1.1:+26522933 | MS.gene65482:CDS |
TTTCAAATGAGACTTCATAT+GGG | 0.551244 | 1.1:+26522926 | MS.gene65482:CDS |
TCCTATTCCCCACTAGGCGG+CGG | 0.552022 | 1.1:+26523869 | MS.gene65482:CDS |
AGCTGCTAAGAAGCCATGGC+CGG | 0.553641 | 1.1:+26519493 | None:intergenic |
GAAGAAGATGCATTCTGAGA+AGG | 0.554907 | 1.1:+26519608 | MS.gene65482:CDS |
ATATAACCAATCACTTTCAC+GGG | 0.562310 | 1.1:+26523976 | MS.gene65482:CDS |
AGAACTTATCAATGAAGGAA+AGG | 0.566138 | 1.1:+26522514 | MS.gene65482:CDS |
TTGCTATCCTATTCCCCACT+AGG | 0.566323 | 1.1:+26523863 | MS.gene65482:CDS |
GGAAGACTGAATCTCTTCCC+TGG | 0.567807 | 1.1:+26523941 | MS.gene65482:CDS |
ATGCATCAGGTACGTTACAT+AGG | 0.569919 | 1.1:+26522901 | MS.gene65482:intron |
TGGTGTGAGAGAATGAGAAA+TGG | 0.573879 | 1.1:-26519545 | None:intergenic |
CGTCCATGCAGCTAAAGTTG+AGG | 0.578730 | 1.1:+26522960 | MS.gene65482:CDS |
TATATCTTTCCATGTAGCCA+GGG | 0.587281 | 1.1:-26523958 | None:intergenic |
GAAAGAGCAGACACCGGCCA+TGG | 0.588039 | 1.1:-26519506 | None:intergenic |
AATTATCGGTGCAACATCTG+TGG | 0.606607 | 1.1:+26524360 | MS.gene65482:CDS |
TTACCAGCAGAAGTCATGAC+AGG | 0.613222 | 1.1:+26524430 | MS.gene65482:CDS |
GAGTGTTCCGCCGCCTAGTG+GGG | 0.617674 | 1.1:-26523876 | None:intergenic |
GACGTTTGGGGAGCAAAACA+CGG | 0.625843 | 1.1:+26520770 | MS.gene65482:CDS |
GGCAAATATCAAAGAAAGTG+TGG | 0.631997 | 1.1:+26522034 | MS.gene65482:CDS |
TTCAAATGAGACTTCATATG+GGG | 0.645850 | 1.1:+26522927 | MS.gene65482:CDS |
AGAAATGGCAACAACGTCGG+AGG | 0.648860 | 1.1:-26519530 | None:intergenic |
TTGATGGCGGCACAAACAAG+AGG | 0.649025 | 1.1:-26519646 | None:intergenic |
CCTATGATCCTTCAAAATGG+CGG | 0.666502 | 1.1:+26522453 | MS.gene65482:CDS |
GAAGTCTCAATCTCGTGACA+AGG | 0.666696 | 1.1:+26521651 | MS.gene65482:CDS |
ATGAGAAATGGCAACAACGT+CGG | 0.668018 | 1.1:-26519533 | None:intergenic |
GGAGGAGAAAGAGCAGACAC+CGG | 0.670007 | 1.1:-26519512 | None:intergenic |
CCAATGAAGAAAGAGACACA+AGG | 0.681685 | 1.1:+26521598 | MS.gene65482:CDS |
TAATGCTCTTGATACTGCTG+AGG | 0.693085 | 1.1:+26520839 | MS.gene65482:CDS |
TGAGAAGGACGAGAACTGTG+AGG | 0.701626 | 1.1:+26519623 | MS.gene65482:CDS |
AATGTTTCAGATGACGTTTG+GGG | 0.705815 | 1.1:+26520758 | MS.gene65482:intron |
CTGCAATGGATTGTTGATGG+CGG | 0.723159 | 1.1:-26519659 | None:intergenic |
CTATCCTATTCCCCACTAGG+CGG | 0.752007 | 1.1:+26523866 | MS.gene65482:CDS |
GTGTTGTTGAGAGACAGTGA+TGG | 0.758761 | 1.1:-26519565 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTTTTAATGTTCTTTTT+AGG | + | chr1.1:26521707-26521726 | MS.gene65482:intron | 10.0% |
!! | AACCTATACATTTATATAAA+AGG | - | chr1.1:26520647-26520666 | None:intergenic | 15.0% |
!! | AATAAAGGAAAATTCTTAAT+TGG | - | chr1.1:26524219-26524238 | None:intergenic | 15.0% |
!! | ACCTATACATTTATATAAAA+GGG | - | chr1.1:26520646-26520665 | None:intergenic | 15.0% |
!! | AGGAAAAAAAACATAAAAAT+CGG | - | chr1.1:26521393-26521412 | None:intergenic | 15.0% |
!!! | AATGTAATACTTTTAAAACT+TGG | - | chr1.1:26523203-26523222 | None:intergenic | 15.0% |
!!! | AATGTGATTTTTATTGTATT+AGG | + | chr1.1:26522297-26522316 | MS.gene65482:intron | 15.0% |
!!! | ATGTAATACTTTTAAAACTT+GGG | - | chr1.1:26523202-26523221 | None:intergenic | 15.0% |
!!! | ATTTTATTTGTTACTTTCAT+TGG | + | chr1.1:26522151-26522170 | MS.gene65482:intron | 15.0% |
!!! | TATTTTTGCAAATTTCTTAA+TGG | - | chr1.1:26523715-26523734 | None:intergenic | 15.0% |
!!! | TTCTTTGAAATTGTTATTAA+GGG | + | chr1.1:26520586-26520605 | MS.gene65482:intron | 15.0% |
!!! | TTTCTTTGAAATTGTTATTA+AGG | + | chr1.1:26520585-26520604 | MS.gene65482:intron | 15.0% |
!! | AACCAAACATGAAAAAATAA+AGG | - | chr1.1:26524234-26524253 | None:intergenic | 20.0% |
!! | AATTGATTATACTTGAAACT+AGG | - | chr1.1:26520030-26520049 | None:intergenic | 20.0% |
!! | CAATATATTAAAAGTTCCAT+AGG | - | chr1.1:26521733-26521752 | None:intergenic | 20.0% |
!! | CTAGACATAAGTTTATAAAT+GGG | - | chr1.1:26520408-26520427 | None:intergenic | 20.0% |
!! | TAGACATAAGTTTATAAATG+GGG | - | chr1.1:26520407-26520426 | None:intergenic | 20.0% |
!!! | AAAATTGATTTCAACATGTT+TGG | - | chr1.1:26520085-26520104 | None:intergenic | 20.0% |
!!! | AATCTGAAACAAATTATGAT+TGG | - | chr1.1:26521101-26521120 | None:intergenic | 20.0% |
!!! | AATTTTGTGATTAGATGTAA+TGG | + | chr1.1:26520983-26521002 | MS.gene65482:intron | 20.0% |
!!! | ATCTGAAACAAATTATGATT+GGG | - | chr1.1:26521100-26521119 | None:intergenic | 20.0% |
!!! | TCCCTTTTATATAAATGTAT+AGG | + | chr1.1:26520642-26520661 | MS.gene65482:intron | 20.0% |
!!! | TGTAATACTTTTAAAACTTG+GGG | - | chr1.1:26523201-26523220 | None:intergenic | 20.0% |
!!! | TGTTAAATTTTTTGTGAATG+AGG | + | chr1.1:26521125-26521144 | MS.gene65482:intron | 20.0% |
!!! | TTCCTTTATTTTTTCATGTT+TGG | + | chr1.1:26524229-26524248 | MS.gene65482:intron | 20.0% |
! | AACACGAATCATATACTATA+AGG | - | chr1.1:26523140-26523159 | None:intergenic | 25.0% |
! | AACCATACACTAAAAGTTTA+CGG | - | chr1.1:26523579-26523598 | None:intergenic | 25.0% |
! | AACTATTAAGTATCTTGAGT+TGG | + | chr1.1:26524264-26524283 | MS.gene65482:CDS | 25.0% |
! | ACAAATGATTACAGATAACA+TGG | + | chr1.1:26523333-26523352 | MS.gene65482:intron | 25.0% |
! | CCATTTATAAACTTATGTCT+AGG | + | chr1.1:26520406-26520425 | MS.gene65482:intron | 25.0% |
! | CCTAGACATAAGTTTATAAA+TGG | - | chr1.1:26520409-26520428 | None:intergenic | 25.0% |
! | TAGAAAAGATAAAGCATGTT+AGG | - | chr1.1:26522549-26522568 | None:intergenic | 25.0% |
! | TAGAGAGTCCAAAATAAAAA+AGG | + | chr1.1:26523231-26523250 | MS.gene65482:intron | 25.0% |
! | TAGATTGCAAGAATAGAATT+AGG | - | chr1.1:26521437-26521456 | None:intergenic | 25.0% |
! | TGAAATTCAAGTATTTCGAT+TGG | + | chr1.1:26520936-26520955 | MS.gene65482:intron | 25.0% |
! | TGAGTTTCTTTATCTTACAA+GGG | + | chr1.1:26523414-26523433 | MS.gene65482:intron | 25.0% |
! | TTACTATTAGTACAGATTGA+AGG | - | chr1.1:26522693-26522712 | None:intergenic | 25.0% |
! | TTATAATAACCAAACTGAAC+TGG | - | chr1.1:26524154-26524173 | None:intergenic | 25.0% |
! | TTGAGTTTCTTTATCTTACA+AGG | + | chr1.1:26523413-26523432 | MS.gene65482:intron | 25.0% |
! | TTTCAAATGAGACTTCATAT+GGG | + | chr1.1:26522926-26522945 | MS.gene65482:CDS | 25.0% |
! | TTTCAAGAACTTATCAATGA+AGG | + | chr1.1:26522509-26522528 | MS.gene65482:CDS | 25.0% |
!! | GTTTCAAGTATAATCAATTC+TGG | + | chr1.1:26520031-26520050 | MS.gene65482:intron | 25.0% |
!! | TGATTTTCTGCTTTCATTAT+AGG | + | chr1.1:26522396-26522415 | MS.gene65482:intron | 25.0% |
!!! | TAATTCGGTTTTGAAAAAGA+CGG | - | chr1.1:26524039-26524058 | None:intergenic | 25.0% |
!!! | TTATTTGTTACTTTCATTGG+TGG | + | chr1.1:26522154-26522173 | MS.gene65482:intron | 25.0% |
!!! | TTGATTTGTTGCAAATTCAT+TGG | + | chr1.1:26522090-26522109 | MS.gene65482:CDS | 25.0% |
!!! | TTTTTTATTTTGGACTCTCT+AGG | - | chr1.1:26523232-26523251 | None:intergenic | 25.0% |
!!! | TTTTTTCATGTTTGGTTTTC+AGG | + | chr1.1:26524237-26524256 | MS.gene65482:intron | 25.0% |
AAACAGACTAATAAACTCGA+GGG | - | chr1.1:26521026-26521045 | None:intergenic | 30.0% | |
AACATAAAAATCGGTCACAT+AGG | - | chr1.1:26521384-26521403 | None:intergenic | 30.0% | |
AATATCAGTGAAATCACTCT+TGG | + | chr1.1:26519709-26519728 | MS.gene65482:CDS | 30.0% | |
AGAACTTATCAATGAAGGAA+AGG | + | chr1.1:26522514-26522533 | MS.gene65482:CDS | 30.0% | |
AGATAAAGCATGTTAGGAAT+AGG | - | chr1.1:26522543-26522562 | None:intergenic | 30.0% | |
AGGTATCAAAACATGAACTT+TGG | + | chr1.1:26521786-26521805 | MS.gene65482:intron | 30.0% | |
ATATAACCAATCACTTTCAC+GGG | + | chr1.1:26523976-26523995 | MS.gene65482:CDS | 30.0% | |
ATCACTTAATTCTGTATTGC+TGG | + | chr1.1:26523090-26523109 | MS.gene65482:intron | 30.0% | |
ATCATAGCAACAAAAGTTTG+CGG | + | chr1.1:26521954-26521973 | MS.gene65482:CDS | 30.0% | |
ATGATAATCTATGCACAAAG+AGG | - | chr1.1:26521939-26521958 | None:intergenic | 30.0% | |
ATTCCTATGATCCTTCAAAA+TGG | + | chr1.1:26522450-26522469 | MS.gene65482:CDS | 30.0% | |
ATTGGTTATCTTGTTAACCA+TGG | - | chr1.1:26524201-26524220 | None:intergenic | 30.0% | |
CAAGAGAGAATAAATCACTT+AGG | - | chr1.1:26521413-26521432 | None:intergenic | 30.0% | |
CAGTTTGGTTATTATAACAC+TGG | + | chr1.1:26524157-26524176 | MS.gene65482:intron | 30.0% | |
CATTTCCAACATTATAGAAG+TGG | - | chr1.1:26521320-26521339 | None:intergenic | 30.0% | |
CTCAATTATGCATTTGAGAA+TGG | + | chr1.1:26520813-26520832 | MS.gene65482:CDS | 30.0% | |
CTTTACTTTCAACTCACTTT+CGG | - | chr1.1:26519921-26519940 | None:intergenic | 30.0% | |
GAGTGATTTCACTGATATTA+AGG | - | chr1.1:26519708-26519727 | None:intergenic | 30.0% | |
GATATAACCAATCACTTTCA+CGG | + | chr1.1:26523975-26523994 | MS.gene65482:CDS | 30.0% | |
GATCATATTCATATGCACTT+TGG | + | chr1.1:26523523-26523542 | MS.gene65482:intron | 30.0% | |
GATTACAGATAACATGGTTT+AGG | + | chr1.1:26523339-26523358 | MS.gene65482:intron | 30.0% | |
GTAAAAATGAGATAGAACGA+AGG | - | chr1.1:26520896-26520915 | None:intergenic | 30.0% | |
GTATTATAACCTCAACTCAA+GGG | + | chr1.1:26521172-26521191 | MS.gene65482:intron | 30.0% | |
GTTTCAAATGAGACTTCATA+TGG | + | chr1.1:26522925-26522944 | MS.gene65482:CDS | 30.0% | |
TAAAAGTTTACGGATCACAT+TGG | - | chr1.1:26523569-26523588 | None:intergenic | 30.0% | |
TCAAACCAAAGATATGAAAG+CGG | - | chr1.1:26521268-26521287 | None:intergenic | 30.0% | |
TCATATACTATAAGGACAAC+AGG | - | chr1.1:26523132-26523151 | None:intergenic | 30.0% | |
TCTCACAATCAGCAATTTAT+AGG | + | chr1.1:26523438-26523457 | MS.gene65482:intron | 30.0% | |
TGACTTAGTAGGATAATGTT+TGG | + | chr1.1:26522183-26522202 | MS.gene65482:intron | 30.0% | |
TGATAATCTATGCACAAAGA+GGG | - | chr1.1:26521938-26521957 | None:intergenic | 30.0% | |
TTAGACAAGTTAGACTCAAT+AGG | - | chr1.1:26519830-26519849 | None:intergenic | 30.0% | |
TTATTTGAGCAGTTCAATTG+CGG | - | chr1.1:26524122-26524141 | None:intergenic | 30.0% | |
TTCAAATGAGACTTCATATG+GGG | + | chr1.1:26522927-26522946 | MS.gene65482:CDS | 30.0% | |
TTCAATGACTTTAAACCACT+CGG | + | chr1.1:26524090-26524109 | MS.gene65482:intron | 30.0% | |
TTGAAGTACATTTAACGACA+AGG | + | chr1.1:26521766-26521785 | MS.gene65482:intron | 30.0% | |
TTTCACTAGTTAATCCCATA+TGG | - | chr1.1:26521527-26521546 | None:intergenic | 30.0% | |
! | ACACCTCCAGAATTAATTTT+GGG | + | chr1.1:26520105-26520124 | MS.gene65482:intron | 30.0% |
! | AGTTTTACTCTGACTTCAAT+TGG | + | chr1.1:26520280-26520299 | MS.gene65482:intron | 30.0% |
! | ATCCGTAAACTTTTAGTGTA+TGG | + | chr1.1:26523574-26523593 | MS.gene65482:intron | 30.0% |
! | ATGCTTTTACAACAACTGAA+CGG | + | chr1.1:26524404-26524423 | MS.gene65482:CDS | 30.0% |
! | CATCAATGTCTTCTTTTAGT+TGG | - | chr1.1:26524387-26524406 | None:intergenic | 30.0% |
! | GTTTTACTCTGACTTCAATT+GGG | + | chr1.1:26520281-26520300 | MS.gene65482:intron | 30.0% |
! | TACACCTCCAGAATTAATTT+TGG | + | chr1.1:26520104-26520123 | MS.gene65482:intron | 30.0% |
!! | AATTCTAAAGCTGCAAAAAG+TGG | + | chr1.1:26523920-26523939 | MS.gene65482:CDS | 30.0% |
!! | TAATGTTCTTTTTAGGCCTA+TGG | + | chr1.1:26521714-26521733 | MS.gene65482:intron | 30.0% |
!! | TTAGTGCATGTTTTGTTCTA+TGG | + | chr1.1:26519851-26519870 | MS.gene65482:intron | 30.0% |
!! | TTTGTATTTTTGCATGCATC+AGG | + | chr1.1:26522888-26522907 | MS.gene65482:intron | 30.0% |
!!! | CAGGAAAGCCTTTTTTATTT+TGG | - | chr1.1:26523242-26523261 | None:intergenic | 30.0% |
!!! | CATGCTGGTTTTTTGTTTTA+AGG | - | chr1.1:26520166-26520185 | None:intergenic | 30.0% |
!!! | TTGGACGTTTTTGAAGTTTA+AGG | - | chr1.1:26523550-26523569 | None:intergenic | 30.0% |
AAGCCAATGTTGCAATTCTT+TGG | - | chr1.1:26523845-26523864 | None:intergenic | 35.0% | |
AATAACCAAACTGAACTGGA+TGG | - | chr1.1:26524150-26524169 | None:intergenic | 35.0% | |
AATGTTTCAGATGACGTTTG+GGG | + | chr1.1:26520758-26520777 | MS.gene65482:intron | 35.0% | |
ACACTTTGCTACATATAACG+AGG | + | chr1.1:26521810-26521829 | MS.gene65482:intron | 35.0% | |
AGCTTCTTCATGTTCTTAGT+TGG | + | chr1.1:26523780-26523799 | MS.gene65482:intron | 35.0% | |
AGGAGTTAAACCATGTTTCT+TGG | - | chr1.1:26524290-26524309 | None:intergenic | 35.0% | |
AGGTCAATCTCATTCAATGT+GGG | + | chr1.1:26520426-26520445 | MS.gene65482:intron | 35.0% | |
AGTTTATGCTAATTGACGTG+TGG | - | chr1.1:26522831-26522850 | None:intergenic | 35.0% | |
ATAATTGAACTCGCCATGAA+TGG | - | chr1.1:26524346-26524365 | None:intergenic | 35.0% | |
ATATGAAAGCGGCAATAATG+AGG | - | chr1.1:26521257-26521276 | None:intergenic | 35.0% | |
CAATGTTGCAATTCTTTGGA+TGG | - | chr1.1:26523841-26523860 | None:intergenic | 35.0% | |
CAATGTTTCAGATGACGTTT+GGG | + | chr1.1:26520757-26520776 | MS.gene65482:intron | 35.0% | |
CATCCAAAGAATTGCAACAT+TGG | + | chr1.1:26523839-26523858 | MS.gene65482:CDS | 35.0% | |
CCAAGTATTCAAAGATCTAC+AGG | - | chr1.1:26523261-26523280 | None:intergenic | 35.0% | |
CCTGTAGATCTTTGAATACT+TGG | + | chr1.1:26523258-26523277 | MS.gene65482:intron | 35.0% | |
GAAACAGACTAATAAACTCG+AGG | - | chr1.1:26521027-26521046 | None:intergenic | 35.0% | |
GAATATGATCCCAAGTTTGA+AGG | - | chr1.1:26523513-26523532 | None:intergenic | 35.0% | |
GGCAAATATCAAAGAAAGTG+TGG | + | chr1.1:26522034-26522053 | MS.gene65482:CDS | 35.0% | |
GGTATTATAACCTCAACTCA+AGG | + | chr1.1:26521171-26521190 | MS.gene65482:intron | 35.0% | |
GTCTCTTTCTTCATTGGAAT+CGG | - | chr1.1:26521595-26521614 | None:intergenic | 35.0% | |
GTGCTAACAATTCCTTTGTT+GGG | + | chr1.1:26520244-26520263 | MS.gene65482:intron | 35.0% | |
GTTCAAAAACAAGTTTAGCC+TGG | - | chr1.1:26522352-26522371 | None:intergenic | 35.0% | |
TAGGTCAATCTCATTCAATG+TGG | + | chr1.1:26520425-26520444 | MS.gene65482:intron | 35.0% | |
TATATCTTTCCATGTAGCCA+GGG | - | chr1.1:26523961-26523980 | None:intergenic | 35.0% | |
TCACAGACTTATGAATCACA+AGG | - | chr1.1:26522787-26522806 | None:intergenic | 35.0% | |
TCACATACACATGTACAAGA+AGG | - | chr1.1:26522859-26522878 | None:intergenic | 35.0% | |
TCACTGTGATGATTTACGTA+CGG | + | chr1.1:26520710-26520729 | MS.gene65482:intron | 35.0% | |
TCTCTTTCTTCATTGGAATC+GGG | - | chr1.1:26521594-26521613 | None:intergenic | 35.0% | |
TTATATCTTTCCATGTAGCC+AGG | - | chr1.1:26523962-26523981 | None:intergenic | 35.0% | |
TTCATGGCGAGTTCAATTAT+CGG | + | chr1.1:26524346-26524365 | MS.gene65482:CDS | 35.0% | |
TTCTGGATACTGACAATCTT+TGG | - | chr1.1:26522991-26523010 | None:intergenic | 35.0% | |
! | AGAAATAGTGATGATGAACC+AGG | + | chr1.1:26522331-26522350 | MS.gene65482:intron | 35.0% |
! | AGCAAATACAAAGTACTCCT+CGG | - | chr1.1:26522621-26522640 | None:intergenic | 35.0% |
! | CAAATCTCAATCTAGCTTCA+GGG | - | chr1.1:26521846-26521865 | None:intergenic | 35.0% |
! | GTGTGTTTTACATGCCATAT+GGG | + | chr1.1:26521510-26521529 | MS.gene65482:intron | 35.0% |
! | GTTAACCATGGTTTAGAGTA+TGG | - | chr1.1:26524189-26524208 | None:intergenic | 35.0% |
! | TGTGTGTTTTACATGCCATA+TGG | + | chr1.1:26521509-26521528 | MS.gene65482:intron | 35.0% |
! | TGTTGCTGTTGTTGTTGTAT+CGG | + | chr1.1:26522207-26522226 | MS.gene65482:intron | 35.0% |
!! | CTTGTAAGAAGTCGTTTTGA+AGG | + | chr1.1:26523024-26523043 | MS.gene65482:CDS | 35.0% |
!! | TATTGCCGCTTTCATATCTT+TGG | + | chr1.1:26521260-26521279 | MS.gene65482:intron | 35.0% |
!! | TGTTTTGTTCCACTTCTAGA+GGG | - | chr1.1:26520131-26520150 | None:intergenic | 35.0% |
!! | TTGTTTTGTTCCACTTCTAG+AGG | - | chr1.1:26520132-26520151 | None:intergenic | 35.0% |
!!! | TTTAGGATTTTAGTTGCCAG+AGG | + | chr1.1:26523356-26523375 | MS.gene65482:intron | 35.0% |
AAAAAACCAGCATGTAACCC+AGG | + | chr1.1:26520172-26520191 | MS.gene65482:intron | 40.0% | |
AAAAACCAGCATGTAACCCA+GGG | + | chr1.1:26520173-26520192 | MS.gene65482:intron | 40.0% | |
AAAGGAATTGTTAGCACCTG+GGG | - | chr1.1:26520241-26520260 | None:intergenic | 40.0% | |
AAGTGGCGAGAATGATACAT+AGG | - | chr1.1:26521303-26521322 | None:intergenic | 40.0% | |
AATCAATCCCAAGACGCTTA+AGG | - | chr1.1:26522067-26522086 | None:intergenic | 40.0% | |
AATTATCGGTGCAACATCTG+TGG | + | chr1.1:26524360-26524379 | MS.gene65482:CDS | 40.0% | |
AATTGTGTGCAGGGATAACT+TGG | - | chr1.1:26521476-26521495 | None:intergenic | 40.0% | |
AATTTACCCCACTCCAAGTT+AGG | - | chr1.1:26523683-26523702 | None:intergenic | 40.0% | |
ACAAAGGAATTGTTAGCACC+TGG | - | chr1.1:26520243-26520262 | None:intergenic | 40.0% | |
AGAAAAGCCTTAAGCGTCTT+GGG | + | chr1.1:26522057-26522076 | MS.gene65482:CDS | 40.0% | |
AGAGGGCCCAAAATTAATTC+TGG | - | chr1.1:26520114-26520133 | None:intergenic | 40.0% | |
AGATTGCAAGAATTGTGTGC+AGG | - | chr1.1:26521486-26521505 | None:intergenic | 40.0% | |
ATGAGAAATGGCAACAACGT+CGG | - | chr1.1:26519536-26519555 | None:intergenic | 40.0% | |
ATGCATCAGGTACGTTACAT+AGG | + | chr1.1:26522901-26522920 | MS.gene65482:intron | 40.0% | |
ATGGAGTTCAAATCTCCTTC+GGG | + | chr1.1:26521195-26521214 | MS.gene65482:intron | 40.0% | |
ATTTACCCCACTCCAAGTTA+GGG | - | chr1.1:26523682-26523701 | None:intergenic | 40.0% | |
CAAAGGAATTGTTAGCACCT+GGG | - | chr1.1:26520242-26520261 | None:intergenic | 40.0% | |
CCAATGAAGAAAGAGACACA+AGG | + | chr1.1:26521598-26521617 | MS.gene65482:CDS | 40.0% | |
CCTATGATCCTTCAAAATGG+CGG | + | chr1.1:26522453-26522472 | MS.gene65482:CDS | 40.0% | |
CCTGAAGCTAGATTGAGATT+TGG | + | chr1.1:26521844-26521863 | MS.gene65482:intron | 40.0% | |
CCTTGTGTCTCTTTCTTCAT+TGG | - | chr1.1:26521601-26521620 | None:intergenic | 40.0% | |
CTGATCTCTATATTGCTAGC+TGG | + | chr1.1:26521626-26521645 | MS.gene65482:CDS | 40.0% | |
GATATGCAAGCTTCACTCTT+TGG | + | chr1.1:26521063-26521082 | MS.gene65482:intron | 40.0% | |
GATGGAGTTCAAATCTCCTT+CGG | + | chr1.1:26521194-26521213 | MS.gene65482:intron | 40.0% | |
GATTGCAAGAATTGTGTGCA+GGG | - | chr1.1:26521485-26521504 | None:intergenic | 40.0% | |
GCAATGTTTCAGATGACGTT+TGG | + | chr1.1:26520756-26520775 | MS.gene65482:intron | 40.0% | |
GCTAAAAATTCCCCAAAAGC+AGG | - | chr1.1:26523474-26523493 | None:intergenic | 40.0% | |
GCTTGCAACTGTTCAACAAA+CGG | - | chr1.1:26522488-26522507 | None:intergenic | 40.0% | |
GGTCAATCTCATTCAATGTG+GGG | + | chr1.1:26520427-26520446 | MS.gene65482:intron | 40.0% | |
GGTGCTAACAATTCCTTTGT+TGG | + | chr1.1:26520243-26520262 | MS.gene65482:intron | 40.0% | |
GGTGGTGTATATGACTTAGT+AGG | + | chr1.1:26522172-26522191 | MS.gene65482:intron | 40.0% | |
TAATGCTCTTGATACTGCTG+AGG | + | chr1.1:26520839-26520858 | MS.gene65482:CDS | 40.0% | |
TATAACCTCAACTCAAGGGA+TGG | + | chr1.1:26521176-26521195 | MS.gene65482:intron | 40.0% | |
TATATGAACTCGCCCAACAA+AGG | - | chr1.1:26520259-26520278 | None:intergenic | 40.0% | |
TCAACAATCCATTGCAGTAC+CGG | + | chr1.1:26519665-26519684 | MS.gene65482:CDS | 40.0% | |
TCAGACCATACTCTAAACCA+TGG | + | chr1.1:26524181-26524200 | MS.gene65482:intron | 40.0% | |
TCTCGCCACTTCTATAATGT+TGG | + | chr1.1:26521312-26521331 | MS.gene65482:intron | 40.0% | |
TGCTGGTACGATGTCTAATT+CGG | - | chr1.1:26524054-26524073 | None:intergenic | 40.0% | |
TGGTCCAAGAACCAACTAAT+CGG | - | chr1.1:26520336-26520355 | None:intergenic | 40.0% | |
TGGTGTGAGAGAATGAGAAA+TGG | - | chr1.1:26519548-26519567 | None:intergenic | 40.0% | |
TTCGAACTTGACACCTAAAG+AGG | - | chr1.1:26520216-26520235 | None:intergenic | 40.0% | |
TTCTTACCCGTGAAAGTGAT+TGG | - | chr1.1:26523985-26524004 | None:intergenic | 40.0% | |
TTGAAGGTGGCAAGAGAAAT+AGG | + | chr1.1:26523386-26523405 | MS.gene65482:intron | 40.0% | |
! | AGTACAGTTCTTTTCTGACG+TGG | + | chr1.1:26523049-26523068 | MS.gene65482:intron | 40.0% |
! | CCAAATCTCAATCTAGCTTC+AGG | - | chr1.1:26521847-26521866 | None:intergenic | 40.0% |
! | GAAGAAGATGCATTCTGAGA+AGG | + | chr1.1:26519608-26519627 | MS.gene65482:CDS | 40.0% |
! | TTCACCGATTAGTTGGTTCT+TGG | + | chr1.1:26520329-26520348 | MS.gene65482:intron | 40.0% |
!! | CATACATTCTCCTGCTTTTG+GGG | + | chr1.1:26523461-26523480 | MS.gene65482:intron | 40.0% |
!! | GCATACATTCTCCTGCTTTT+GGG | + | chr1.1:26523460-26523479 | MS.gene65482:intron | 40.0% |
!! | GTACTGCAATGGATTGTTGA+TGG | - | chr1.1:26519665-26519684 | None:intergenic | 40.0% |
!! | TGTTTTTGCAGTTGATCTCG+TGG | + | chr1.1:26523808-26523827 | MS.gene65482:intron | 40.0% |
AACAATGCAACGTAGCGATC+TGG | - | chr1.1:26522422-26522441 | None:intergenic | 45.0% | |
AACTTCACACCCGCTAACTT+AGG | - | chr1.1:26523757-26523776 | None:intergenic | 45.0% | |
AAGGAATTGTTAGCACCTGG+GGG | - | chr1.1:26520240-26520259 | None:intergenic | 45.0% | |
AATCCTATCATCCACTAGCG+AGG | - | chr1.1:26520307-26520326 | None:intergenic | 45.0% | |
ACTCCAAGTTAGGGTTCAAC+TGG | - | chr1.1:26523673-26523692 | None:intergenic | 45.0% | |
ACTTCACACCCGCTAACTTA+GGG | - | chr1.1:26523756-26523775 | None:intergenic | 45.0% | |
AGTCCAGTTGAACCCTAACT+TGG | + | chr1.1:26523667-26523686 | MS.gene65482:intron | 45.0% | |
AGTTGAACCCTAACTTGGAG+TGG | + | chr1.1:26523672-26523691 | MS.gene65482:intron | 45.0% | |
ATCGTACCAGCATGACTTCT+GGG | + | chr1.1:26524062-26524081 | MS.gene65482:intron | 45.0% | |
ATTCCTGTCATGACTTCTGC+TGG | - | chr1.1:26524436-26524455 | None:intergenic | 45.0% | |
CAAATCTCCTTCGGGATATG+TGG | + | chr1.1:26521203-26521222 | MS.gene65482:intron | 45.0% | |
CAAGCAAGCTATAGCTGTTC+TGG | - | chr1.1:26523008-26523027 | None:intergenic | 45.0% | |
CTGAACCATCCAGTTCAGTT+TGG | + | chr1.1:26524142-26524161 | MS.gene65482:intron | 45.0% | |
GAAGTCTCAATCTCGTGACA+AGG | + | chr1.1:26521651-26521670 | MS.gene65482:CDS | 45.0% | |
GAGAAAAGCCTTAAGCGTCT+TGG | + | chr1.1:26522056-26522075 | MS.gene65482:CDS | 45.0% | |
GATCGCTACGTTGCATTGTT+TGG | + | chr1.1:26522422-26522441 | MS.gene65482:CDS | 45.0% | |
GGGCCCAAAATTAATTCTGG+AGG | - | chr1.1:26520111-26520130 | None:intergenic | 45.0% | |
GTCATGACTTCTGCTGGTAA+AGG | - | chr1.1:26524430-26524449 | None:intergenic | 45.0% | |
GTCCATGCAGCTAAAGTTGA+GGG | + | chr1.1:26522961-26522980 | MS.gene65482:CDS | 45.0% | |
GTTGAACCCTAACTTGGAGT+GGG | + | chr1.1:26523673-26523692 | MS.gene65482:intron | 45.0% | |
TGAGACTTCATATGGGGTGA+TGG | + | chr1.1:26522933-26522952 | MS.gene65482:CDS | 45.0% | |
TGTGAGAGATCGTCCATTCA+TGG | + | chr1.1:26524330-26524349 | MS.gene65482:CDS | 45.0% | |
TGTTCAACAAACGGCACACT+AGG | - | chr1.1:26522479-26522498 | None:intergenic | 45.0% | |
TTACCAGCAGAAGTCATGAC+AGG | + | chr1.1:26524430-26524449 | MS.gene65482:CDS | 45.0% | |
TTCAGAACCACATATCCCGA+AGG | - | chr1.1:26521213-26521232 | None:intergenic | 45.0% | |
TTGAACCCTAACTTGGAGTG+GGG | + | chr1.1:26523674-26523693 | MS.gene65482:intron | 45.0% | |
TTGCTATCCTATTCCCCACT+AGG | + | chr1.1:26523863-26523882 | MS.gene65482:CDS | 45.0% | |
TTTGCTCAGTGGTAAGAGCT+TGG | + | chr1.1:26521150-26521169 | MS.gene65482:intron | 45.0% | |
! | ACCTAAAGAGGCATACTCCT+AGG | - | chr1.1:26520204-26520223 | None:intergenic | 45.0% |
! | CGACAATGCAGACATTTTGC+GGG | + | chr1.1:26522004-26522023 | MS.gene65482:CDS | 45.0% |
! | GCGACAATGCAGACATTTTG+CGG | + | chr1.1:26522003-26522022 | MS.gene65482:CDS | 45.0% |
! | GGCATACATTCTCCTGCTTT+TGG | + | chr1.1:26523459-26523478 | MS.gene65482:intron | 45.0% |
! | GTGTTGTTGAGAGACAGTGA+TGG | - | chr1.1:26519568-26519587 | None:intergenic | 45.0% |
! | TCGCTAGTGGATGATAGGAT+TGG | + | chr1.1:26520306-26520325 | MS.gene65482:intron | 45.0% |
! | TGAATGAGGTGTTTGCTCAG+TGG | + | chr1.1:26521139-26521158 | MS.gene65482:intron | 45.0% |
! | TGCTGTTGTTGTTGTATCGG+TGG | + | chr1.1:26522210-26522229 | MS.gene65482:intron | 45.0% |
!! | AATTTTGGGCCCTCTAGAAG+TGG | + | chr1.1:26520119-26520138 | MS.gene65482:intron | 45.0% |
!! | CCGCCATTTTGAAGGATCAT+AGG | - | chr1.1:26522456-26522475 | None:intergenic | 45.0% |
!! | CTGCAATGGATTGTTGATGG+CGG | - | chr1.1:26519662-26519681 | None:intergenic | 45.0% |
!! | CTTGAGTTGGCCAAGAAACA+TGG | + | chr1.1:26524277-26524296 | MS.gene65482:CDS | 45.0% |
!! | GGATTGGTTCACCGATTAGT+TGG | + | chr1.1:26520322-26520341 | MS.gene65482:intron | 45.0% |
!! | TTTTAGTTGCCAGAGGTGCA+AGG | + | chr1.1:26523363-26523382 | MS.gene65482:intron | 45.0% |
!!! | AGACATTTTGCGGGTTGATG+CGG | + | chr1.1:26522013-26522032 | MS.gene65482:CDS | 45.0% |
!!! | GTTTTGACTTAGAGAAGCCG+AGG | + | chr1.1:26522601-26522620 | MS.gene65482:intron | 45.0% |
!! | AAAATTAATGTAAAAATAAA+AGG | + | chr1.1:26520474-26520493 | MS.gene65482:intron | 5.0% |
!!! | TTTTTTAAAAATTTGATATA+TGG | - | chr1.1:26520356-26520375 | None:intergenic | 5.0% |
AGAAATGGCAACAACGTCGG+AGG | - | chr1.1:26519533-26519552 | None:intergenic | 50.0% | |
ATACTCCTAGGCCAATCCCT+GGG | - | chr1.1:26520192-26520211 | None:intergenic | 50.0% | |
CACCATGACCCTAAGTTAGC+GGG | + | chr1.1:26523745-26523764 | MS.gene65482:intron | 50.0% | |
CATCGTACCAGCATGACTTC+TGG | + | chr1.1:26524061-26524080 | MS.gene65482:intron | 50.0% | |
CCAAGTTTCCGGTACTGCAA+TGG | - | chr1.1:26519676-26519695 | None:intergenic | 50.0% | |
CGTCCATGCAGCTAAAGTTG+AGG | + | chr1.1:26522960-26522979 | MS.gene65482:CDS | 50.0% | |
CTATCCTATTCCCCACTAGG+CGG | + | chr1.1:26523866-26523885 | MS.gene65482:CDS | 50.0% | |
GAATCTCTTCCCTGGCTACA+TGG | + | chr1.1:26523949-26523968 | MS.gene65482:CDS | 50.0% | |
GACGTTTGGGGAGCAAAACA+CGG | + | chr1.1:26520770-26520789 | MS.gene65482:CDS | 50.0% | |
GCACCATGACCCTAAGTTAG+CGG | + | chr1.1:26523744-26523763 | MS.gene65482:intron | 50.0% | |
GGAAGACTGAATCTCTTCCC+TGG | + | chr1.1:26523941-26523960 | MS.gene65482:CDS | 50.0% | |
GGTCAGAGTCACCAAGTTTC+CGG | - | chr1.1:26519687-26519706 | None:intergenic | 50.0% | |
GTCCCTCAACTTTAGCTGCA+TGG | - | chr1.1:26522966-26522985 | None:intergenic | 50.0% | |
TGAGAAGGACGAGAACTGTG+AGG | + | chr1.1:26519623-26519642 | MS.gene65482:CDS | 50.0% | |
! | CCATTGCAGTACCGGAAACT+TGG | + | chr1.1:26519673-26519692 | MS.gene65482:CDS | 50.0% |
! | GAACTCCATCCCTTGAGTTG+AGG | - | chr1.1:26521184-26521203 | None:intergenic | 50.0% |
! | GCCTAGGAGTATGCCTCTTT+AGG | + | chr1.1:26520200-26520219 | MS.gene65482:intron | 50.0% |
!! | ACACTAGGCCGCCATTTTGA+AGG | - | chr1.1:26522464-26522483 | None:intergenic | 50.0% |
!! | CAATTGCGGTTTTGTCCGAG+TGG | - | chr1.1:26524108-26524127 | None:intergenic | 50.0% |
!! | TTGATGGCGGCACAAACAAG+AGG | - | chr1.1:26519649-26519668 | None:intergenic | 50.0% |
AATCCAAGCGCGAGCTGAAC+AGG | - | chr1.1:26524310-26524329 | None:intergenic | 55.0% | |
ACCAGCATGACTTCTGGGTC+AGG | + | chr1.1:26524067-26524086 | MS.gene65482:intron | 55.0% | |
ACCTGACCCAGAAGTCATGC+TGG | - | chr1.1:26524071-26524090 | None:intergenic | 55.0% | |
CACCCGCTAACTTAGGGTCA+TGG | - | chr1.1:26523750-26523769 | None:intergenic | 55.0% | |
CACCTTCAACCTTGCACCTC+TGG | - | chr1.1:26523375-26523394 | None:intergenic | 55.0% | |
CATACTCCTAGGCCAATCCC+TGG | - | chr1.1:26520193-26520212 | None:intergenic | 55.0% | |
CCAATCCCTGGGTTACATGC+TGG | - | chr1.1:26520181-26520200 | None:intergenic | 55.0% | |
CCAGCATGTAACCCAGGGAT+TGG | + | chr1.1:26520178-26520197 | MS.gene65482:intron | 55.0% | |
CTTCAATTGGGCCTCGCTAG+TGG | + | chr1.1:26520293-26520312 | MS.gene65482:intron | 55.0% | |
GGAGGAGAAAGAGCAGACAC+CGG | - | chr1.1:26519515-26519534 | None:intergenic | 55.0% | |
GTGTCAAGTTCGAATCCCCC+AGG | + | chr1.1:26520222-26520241 | MS.gene65482:intron | 55.0% | |
! | CAGAGGTGCAAGGTTGAAGG+TGG | + | chr1.1:26523373-26523392 | MS.gene65482:intron | 55.0% |
! | TGCCAGAGGTGCAAGGTTGA+AGG | + | chr1.1:26523370-26523389 | MS.gene65482:intron | 55.0% |
!! | TGTAACCCAGGGATTGGCCT+AGG | + | chr1.1:26520184-26520203 | MS.gene65482:intron | 55.0% |
ACTCCTGTTCAGCTCGCGCT+TGG | + | chr1.1:26524304-26524323 | MS.gene65482:CDS | 60.0% | |
TCCTATTCCCCACTAGGCGG+CGG | + | chr1.1:26523869-26523888 | MS.gene65482:CDS | 60.0% | |
! | AGAGTGTTCCGCCGCCTAGT+GGG | - | chr1.1:26523880-26523899 | None:intergenic | 60.0% |
! | GGGCCTCGCTAGTGGATGAT+AGG | + | chr1.1:26520301-26520320 | MS.gene65482:intron | 60.0% |
CTAGGCGGCGGAACACTCTC+TGG | + | chr1.1:26523881-26523900 | MS.gene65482:CDS | 65.0% | |
GAGTGTTCCGCCGCCTAGTG+GGG | - | chr1.1:26523879-26523898 | None:intergenic | 65.0% | |
TCCGCCGCCTAGTGGGGAAT+AGG | - | chr1.1:26523873-26523892 | None:intergenic | 65.0% | |
!! | GAGAGTGTTCCGCCGCCTAG+TGG | - | chr1.1:26523881-26523900 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 26519508 | 26524498 | 26519508 | ID=MS.gene65482 |
chr1.1 | mRNA | 26519508 | 26524498 | 26519508 | ID=MS.gene65482.t1;Parent=MS.gene65482 |
chr1.1 | exon | 26519508 | 26519735 | 26519508 | ID=MS.gene65482.t1.exon1;Parent=MS.gene65482.t1 |
chr1.1 | CDS | 26519508 | 26519735 | 26519508 | ID=cds.MS.gene65482.t1;Parent=MS.gene65482.t1 |
chr1.1 | exon | 26520768 | 26520863 | 26520768 | ID=MS.gene65482.t1.exon2;Parent=MS.gene65482.t1 |
chr1.1 | CDS | 26520768 | 26520863 | 26520768 | ID=cds.MS.gene65482.t1;Parent=MS.gene65482.t1 |
chr1.1 | exon | 26521589 | 26521672 | 26521589 | ID=MS.gene65482.t1.exon3;Parent=MS.gene65482.t1 |
chr1.1 | CDS | 26521589 | 26521672 | 26521589 | ID=cds.MS.gene65482.t1;Parent=MS.gene65482.t1 |
chr1.1 | exon | 26521951 | 26522111 | 26521951 | ID=MS.gene65482.t1.exon4;Parent=MS.gene65482.t1 |
chr1.1 | CDS | 26521951 | 26522111 | 26521951 | ID=cds.MS.gene65482.t1;Parent=MS.gene65482.t1 |
chr1.1 | exon | 26522418 | 26522535 | 26522418 | ID=MS.gene65482.t1.exon5;Parent=MS.gene65482.t1 |
chr1.1 | CDS | 26522418 | 26522535 | 26522418 | ID=cds.MS.gene65482.t1;Parent=MS.gene65482.t1 |
chr1.1 | exon | 26522910 | 26523045 | 26522910 | ID=MS.gene65482.t1.exon6;Parent=MS.gene65482.t1 |
chr1.1 | CDS | 26522910 | 26523045 | 26522910 | ID=cds.MS.gene65482.t1;Parent=MS.gene65482.t1 |
chr1.1 | exon | 26523819 | 26523997 | 26523819 | ID=MS.gene65482.t1.exon7;Parent=MS.gene65482.t1 |
chr1.1 | CDS | 26523819 | 26523997 | 26523819 | ID=cds.MS.gene65482.t1;Parent=MS.gene65482.t1 |
chr1.1 | exon | 26524259 | 26524498 | 26524259 | ID=MS.gene65482.t1.exon8;Parent=MS.gene65482.t1 |
chr1.1 | CDS | 26524259 | 26524498 | 26524259 | ID=cds.MS.gene65482.t1;Parent=MS.gene65482.t1 |
Gene Sequence |
Protein sequence |