Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063206.t1 | XP_003590003.1 | 97.6 | 417 | 6 | 1 | 1 | 413 | 1 | 417 | 2.00E-229 | 804.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063206.t1 | P0A9T4 | 45.0 | 360 | 178 | 7 | 57 | 411 | 1 | 345 | 3.7e-78 | 293.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063206.t1 | G7I4M8 | 97.6 | 417 | 6 | 1 | 1 | 413 | 1 | 417 | 1.5e-229 | 804.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene063206 | 0.809814 | 1.57E-50 | -1.69E-46 |
| MS.gene049173 | MS.gene063206 | 0.838169 | 3.37E-57 | -1.69E-46 |
| MS.gene049217 | MS.gene063206 | 0.848301 | 6.69E-60 | -1.69E-46 |
| MS.gene049222 | MS.gene063206 | 0.819777 | 9.72E-53 | -1.69E-46 |
| MS.gene049285 | MS.gene063206 | 0.853148 | 2.89E-61 | -1.69E-46 |
| MS.gene049320 | MS.gene063206 | 0.818547 | 1.85E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene063206 | 0.804873 | 1.75E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene063206 | 0.800103 | 1.69E-48 | -1.69E-46 |
| MS.gene049805 | MS.gene063206 | 0.812671 | 3.77E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene063206 | 0.840645 | 7.68E-58 | -1.69E-46 |
| MS.gene050165 | MS.gene063206 | 0.852567 | 4.24E-61 | -1.69E-46 |
| MS.gene050333 | MS.gene063206 | 0.879953 | 8.18E-70 | -1.69E-46 |
| MS.gene050444 | MS.gene063206 | 0.84928 | 3.58E-60 | -1.69E-46 |
| MS.gene050518 | MS.gene063206 | 0.808143 | 3.58E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene063206 | 0.828667 | 7.91E-55 | -1.69E-46 |
| MS.gene050675 | MS.gene063206 | 0.822557 | 2.22E-53 | -1.69E-46 |
| MS.gene050767 | MS.gene063206 | 0.821782 | 3.36E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene063206 | 0.826725 | 2.32E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene063206 | 0.842174 | 3.04E-58 | -1.69E-46 |
| MS.gene05079 | MS.gene063206 | -0.817991 | 2.47E-52 | -1.69E-46 |
| MS.gene05080 | MS.gene063206 | 0.806781 | 6.96E-50 | -1.69E-46 |
| MS.gene05100 | MS.gene063206 | 0.801772 | 7.69E-49 | -1.69E-46 |
| MS.gene051228 | MS.gene063206 | 0.882335 | 1.14E-70 | -1.69E-46 |
| MS.gene051434 | MS.gene063206 | 0.823586 | 1.28E-53 | -1.69E-46 |
| MS.gene051617 | MS.gene063206 | 0.805091 | 1.58E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene063206 | 0.817936 | 2.55E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene063206 | 0.83091 | 2.25E-55 | -1.69E-46 |
| MS.gene051858 | MS.gene063206 | 0.816043 | 6.78E-52 | -1.69E-46 |
| MS.gene051949 | MS.gene063206 | 0.864602 | 1.08E-64 | -1.69E-46 |
| MS.gene052271 | MS.gene063206 | 0.833011 | 6.81E-56 | -1.69E-46 |
| MS.gene052290 | MS.gene063206 | 0.809386 | 1.94E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene063206 | 0.844903 | 5.67E-59 | -1.69E-46 |
| MS.gene052870 | MS.gene063206 | 0.859186 | 4.92E-63 | -1.69E-46 |
| MS.gene052872 | MS.gene063206 | 0.86265 | 4.36E-64 | -1.69E-46 |
| MS.gene052916 | MS.gene063206 | 0.840574 | 8.01E-58 | -1.69E-46 |
| MS.gene053009 | MS.gene063206 | 0.804506 | 2.09E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene063206 | 0.825981 | 3.48E-54 | -1.69E-46 |
| MS.gene053207 | MS.gene063206 | 0.804395 | 2.21E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene063206 | 0.824552 | 7.59E-54 | -1.69E-46 |
| MS.gene053384 | MS.gene063206 | 0.90257 | 8.47E-79 | -1.69E-46 |
| MS.gene053632 | MS.gene063206 | 0.831105 | 2.02E-55 | -1.69E-46 |
| MS.gene053824 | MS.gene063206 | 0.808738 | 2.67E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene063206 | 0.855261 | 7.10E-62 | -1.69E-46 |
| MS.gene054600 | MS.gene063206 | 0.800549 | 1.37E-48 | -1.69E-46 |
| MS.gene054642 | MS.gene063206 | 0.858457 | 8.13E-63 | -1.69E-46 |
| MS.gene054954 | MS.gene063206 | 0.82228 | 2.58E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene063206 | 0.824624 | 7.30E-54 | -1.69E-46 |
| MS.gene055206 | MS.gene063206 | 0.829985 | 3.79E-55 | -1.69E-46 |
| MS.gene055397 | MS.gene063206 | 0.848545 | 5.73E-60 | -1.69E-46 |
| MS.gene055502 | MS.gene063206 | 0.814077 | 1.85E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene063206 | 0.812364 | 4.40E-51 | -1.69E-46 |
| MS.gene055636 | MS.gene063206 | 0.842782 | 2.09E-58 | -1.69E-46 |
| MS.gene055638 | MS.gene063206 | 0.852931 | 3.34E-61 | -1.69E-46 |
| MS.gene055647 | MS.gene063206 | 0.803803 | 2.93E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene063206 | 0.821058 | 4.94E-53 | -1.69E-46 |
| MS.gene055748 | MS.gene063206 | 0.814753 | 1.31E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene063206 | 0.807549 | 4.79E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene063206 | 0.819178 | 1.33E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene063206 | 0.850099 | 2.11E-60 | -1.69E-46 |
| MS.gene055941 | MS.gene063206 | 0.832789 | 7.74E-56 | -1.69E-46 |
| MS.gene055956 | MS.gene063206 | -0.803023 | 4.25E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene063206 | 0.815796 | 7.70E-52 | -1.69E-46 |
| MS.gene056487 | MS.gene063206 | 0.822313 | 2.53E-53 | -1.69E-46 |
| MS.gene056549 | MS.gene063206 | 0.821095 | 4.84E-53 | -1.69E-46 |
| MS.gene056609 | MS.gene063206 | 0.845445 | 4.04E-59 | -1.69E-46 |
| MS.gene056657 | MS.gene063206 | 0.847299 | 1.26E-59 | -1.69E-46 |
| MS.gene056692 | MS.gene063206 | 0.814087 | 1.84E-51 | -1.69E-46 |
| MS.gene056903 | MS.gene063206 | 0.818 | 2.46E-52 | -1.69E-46 |
| MS.gene057076 | MS.gene063206 | 0.813354 | 2.67E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene063206 | 0.850366 | 1.78E-60 | -1.69E-46 |
| MS.gene057246 | MS.gene063206 | 0.814151 | 1.78E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene063206 | 0.80468 | 1.92E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene063206 | 0.823381 | 1.43E-53 | -1.69E-46 |
| MS.gene057926 | MS.gene063206 | 0.846628 | 1.93E-59 | -1.69E-46 |
| MS.gene057927 | MS.gene063206 | 0.805019 | 1.63E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene063206 | 0.813291 | 2.76E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene063206 | 0.835868 | 1.31E-56 | -1.69E-46 |
| MS.gene058723 | MS.gene063206 | 0.840221 | 9.91E-58 | -1.69E-46 |
| MS.gene058773 | MS.gene063206 | 0.81533 | 9.77E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene063206 | 0.805891 | 1.07E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene063206 | 0.853465 | 2.35E-61 | -1.69E-46 |
| MS.gene059079 | MS.gene063206 | 0.853865 | 1.80E-61 | -1.69E-46 |
| MS.gene05913 | MS.gene063206 | 0.827314 | 1.68E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene063206 | 0.849787 | 2.58E-60 | -1.69E-46 |
| MS.gene059536 | MS.gene063206 | 0.803276 | 3.77E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene063206 | 0.80162 | 8.26E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene063206 | 0.834064 | 3.72E-56 | -1.69E-46 |
| MS.gene059718 | MS.gene063206 | 0.826101 | 3.26E-54 | -1.69E-46 |
| MS.gene059902 | MS.gene063206 | 0.800551 | 1.37E-48 | -1.69E-46 |
| MS.gene059960 | MS.gene063206 | 0.861791 | 8.00E-64 | -1.69E-46 |
| MS.gene060193 | MS.gene063206 | 0.827934 | 1.19E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene063206 | 0.826436 | 2.72E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene063206 | 0.849027 | 4.21E-60 | -1.69E-46 |
| MS.gene060818 | MS.gene063206 | 0.847612 | 1.04E-59 | -1.69E-46 |
| MS.gene060981 | MS.gene063206 | 0.823036 | 1.72E-53 | -1.69E-46 |
| MS.gene061041 | MS.gene063206 | 0.842937 | 1.91E-58 | -1.69E-46 |
| MS.gene061150 | MS.gene063206 | 0.825575 | 4.35E-54 | -1.69E-46 |
| MS.gene061200 | MS.gene063206 | 0.855332 | 6.77E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene96904 | MS.gene063206 | PPI |
| MS.gene022153 | MS.gene063206 | PPI |
| MS.gene56144 | MS.gene063206 | PPI |
| MS.gene93616 | MS.gene063206 | PPI |
| MS.gene43133 | MS.gene063206 | PPI |
| MS.gene63929 | MS.gene063206 | PPI |
| MS.gene93601 | MS.gene063206 | PPI |
| MS.gene93600 | MS.gene063206 | PPI |
| MS.gene022150 | MS.gene063206 | PPI |
| MS.gene93623 | MS.gene063206 | PPI |
| MS.gene062500 | MS.gene063206 | PPI |
| MS.gene53676 | MS.gene063206 | PPI |
| MS.gene061628 | MS.gene063206 | PPI |
| MS.gene046213 | MS.gene063206 | PPI |
| MS.gene022151 | MS.gene063206 | PPI |
| MS.gene93602 | MS.gene063206 | PPI |
| MS.gene88462 | MS.gene063206 | PPI |
| MS.gene56146 | MS.gene063206 | PPI |
| MS.gene23855 | MS.gene063206 | PPI |
| MS.gene23854 | MS.gene063206 | PPI |
| MS.gene93729 | MS.gene063206 | PPI |
| MS.gene43134 | MS.gene063206 | PPI |
| MS.gene43136 | MS.gene063206 | PPI |
| MS.gene039628 | MS.gene063206 | PPI |
| MS.gene43135 | MS.gene063206 | PPI |
| MS.gene61079 | MS.gene063206 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063206.t1 | MTR_1g042730 | 97.602 | 417 | 6 | 1 | 1 | 413 | 1 | 417 | 0.0 | 841 |
| MS.gene063206.t1 | MTR_8g088160 | 49.451 | 273 | 125 | 8 | 66 | 331 | 48 | 314 | 3.95e-81 | 253 |
| MS.gene063206.t1 | MTR_4g015040 | 88.679 | 53 | 6 | 0 | 178 | 230 | 21 | 73 | 4.70e-30 | 111 |
| MS.gene063206.t1 | MTR_7g114980 | 30.149 | 335 | 179 | 12 | 62 | 385 | 16 | 306 | 2.57e-27 | 111 |
| MS.gene063206.t1 | MTR_7g114980 | 30.693 | 303 | 167 | 12 | 62 | 359 | 16 | 280 | 4.28e-26 | 107 |
| MS.gene063206.t1 | MTR_1g047250 | 27.548 | 363 | 204 | 11 | 57 | 405 | 1 | 318 | 2.38e-25 | 105 |
| MS.gene063206.t1 | MTR_7g114990 | 27.545 | 334 | 183 | 12 | 62 | 385 | 18 | 302 | 1.34e-24 | 103 |
| MS.gene063206.t1 | MTR_7g115010 | 27.954 | 347 | 187 | 12 | 62 | 404 | 14 | 301 | 2.37e-23 | 100 |
| MS.gene063206.t1 | MTR_7g021850 | 27.429 | 350 | 200 | 14 | 61 | 403 | 8 | 310 | 5.52e-23 | 99.4 |
| MS.gene063206.t1 | MTR_7g114970 | 27.628 | 333 | 189 | 10 | 61 | 385 | 11 | 299 | 3.48e-22 | 97.1 |
| MS.gene063206.t1 | MTR_7g021680 | 27.042 | 355 | 204 | 14 | 61 | 408 | 8 | 314 | 4.69e-21 | 94.0 |
| MS.gene063206.t1 | MTR_7g021820 | 27.042 | 355 | 204 | 14 | 61 | 408 | 8 | 314 | 4.69e-21 | 94.0 |
| MS.gene063206.t1 | MTR_7g114970 | 28.013 | 307 | 169 | 10 | 61 | 359 | 11 | 273 | 2.72e-20 | 90.9 |
| MS.gene063206.t1 | MTR_7g114970 | 28.013 | 307 | 169 | 10 | 61 | 359 | 11 | 273 | 2.78e-20 | 90.5 |
| MS.gene063206.t1 | MTR_1g102750 | 26.586 | 331 | 195 | 13 | 61 | 385 | 9 | 297 | 6.39e-20 | 90.5 |
| MS.gene063206.t1 | MTR_1g102750 | 27.541 | 305 | 173 | 13 | 61 | 359 | 9 | 271 | 1.64e-19 | 89.0 |
| MS.gene063206.t1 | MTR_3g449790 | 24.625 | 333 | 198 | 10 | 61 | 380 | 39 | 331 | 7.24e-18 | 84.7 |
| MS.gene063206.t1 | MTR_3g092140 | 25.965 | 285 | 152 | 10 | 48 | 305 | 10 | 262 | 6.40e-17 | 83.2 |
| MS.gene063206.t1 | MTR_3g449790 | 24.324 | 333 | 193 | 10 | 61 | 380 | 39 | 325 | 4.01e-16 | 79.7 |
| MS.gene063206.t1 | MTR_7g114970 | 29.148 | 223 | 122 | 7 | 167 | 385 | 15 | 205 | 1.10e-15 | 76.6 |
| MS.gene063206.t1 | MTR_7g114970 | 27.556 | 225 | 123 | 7 | 61 | 281 | 11 | 199 | 2.64e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063206.t1 | AT1G04420 | 75.521 | 384 | 91 | 1 | 33 | 413 | 29 | 412 | 0.0 | 622 |
| MS.gene063206.t1 | AT1G04690 | 28.916 | 332 | 198 | 8 | 57 | 384 | 1 | 298 | 3.34e-28 | 114 |
| MS.gene063206.t1 | AT1G60710 | 28.940 | 349 | 196 | 14 | 61 | 403 | 11 | 313 | 1.26e-23 | 101 |
| MS.gene063206.t1 | AT1G60690 | 28.571 | 350 | 196 | 13 | 61 | 403 | 11 | 313 | 1.56e-23 | 100 |
| MS.gene063206.t1 | AT1G60680 | 27.515 | 338 | 195 | 11 | 61 | 391 | 11 | 305 | 7.29e-23 | 99.4 |
| MS.gene063206.t1 | AT1G60750 | 28.000 | 350 | 182 | 13 | 61 | 403 | 12 | 298 | 1.15e-20 | 92.8 |
| MS.gene063206.t1 | AT1G10810 | 26.912 | 353 | 198 | 14 | 61 | 403 | 11 | 313 | 1.88e-20 | 92.4 |
| MS.gene063206.t1 | AT1G60730 | 27.143 | 350 | 201 | 14 | 61 | 403 | 11 | 313 | 9.01e-20 | 90.1 |
| MS.gene063206.t1 | AT1G60730 | 27.195 | 353 | 217 | 14 | 61 | 403 | 11 | 333 | 2.79e-19 | 89.0 |
| MS.gene063206.t1 | AT5G53580 | 26.074 | 349 | 189 | 15 | 56 | 385 | 36 | 334 | 3.03e-17 | 83.2 |
| MS.gene063206.t1 | AT1G10810 | 28.458 | 253 | 136 | 10 | 61 | 307 | 11 | 224 | 1.54e-16 | 79.3 |
| MS.gene063206.t1 | AT1G60680 | 28.049 | 246 | 135 | 9 | 61 | 302 | 11 | 218 | 5.27e-16 | 77.8 |
| MS.gene063206.t1 | AT4G33670 | 25.070 | 359 | 210 | 13 | 57 | 409 | 4 | 309 | 4.82e-13 | 70.1 |
Find 85 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTGTCTCTTTCTTCAT+TGG | 0.197248 | 1.2:-26849635 | None:intergenic |
| GGTCAGAGTCACCAAGTTTC+CGG | 0.264198 | 1.2:-26848158 | None:intergenic |
| CAAGCAAGCTATAGCTGTTC+TGG | 0.272185 | 1.2:-26850854 | None:intergenic |
| TTCTGGATACTGACAATCTT+TGG | 0.280723 | 1.2:-26850837 | None:intergenic |
| GTCTCTTTCTTCATTGGAAT+CGG | 0.294986 | 1.2:-26849629 | None:intergenic |
| AAGCCAATGTTGCAATTCTT+TGG | 0.310094 | 1.2:-26851880 | None:intergenic |
| GATCGCTACGTTGCATTGTT+TGG | 0.310293 | 1.2:+26850274 | MS.gene063206:CDS |
| GAGTGATTTCACTGATATTA+AGG | 0.318627 | 1.2:-26848179 | None:intergenic |
| CAATGTTTCAGATGACGTTT+GGG | 0.330727 | 1.2:+26849212 | MS.gene063206:intron |
| ATTCCTATGATCCTTCAAAA+TGG | 0.338544 | 1.2:+26850302 | MS.gene063206:CDS |
| AGGAGTTAGACCATGTTTCT+TGG | 0.357872 | 1.2:-26852310 | None:intergenic |
| TATGTACCCGTGAAATTGAT+TGG | 0.374448 | 1.2:-26852020 | None:intergenic |
| AATCCAAGCGCGAGCTGAAC+AGG | 0.376331 | 1.2:-26852330 | None:intergenic |
| TGTGAGAGATCGTCCATTCA+TGG | 0.397619 | 1.2:+26852353 | MS.gene063206:CDS |
| CTCAATTATGCATTTGAGAA+TGG | 0.398022 | 1.2:+26849268 | MS.gene063206:CDS |
| GCAATGTTTCAGATGACGTT+TGG | 0.398844 | 1.2:+26849211 | MS.gene063206:intron |
| TTTCAAGAACTTATCAATGA+AGG | 0.411788 | 1.2:+26850361 | MS.gene063206:CDS |
| TGAGAGATCGAGTTACTTAC+GGG | 0.414574 | 1.2:+26849904 | MS.gene063206:CDS |
| CTGAGAGATCGAGTTACTTA+CGG | 0.423724 | 1.2:+26849903 | MS.gene063206:CDS |
| ATAATTGAACTCGCCATGAA+TGG | 0.430321 | 1.2:-26852366 | None:intergenic |
| TTGATTTGTTGCAAATTCAT+TGG | 0.436665 | 1.2:+26850011 | MS.gene063206:CDS |
| CCATTGCAGTACCGGAAACT+TGG | 0.436754 | 1.2:+26848147 | MS.gene063206:CDS |
| ACTCCTGTTCAGCTCGCGCT+TGG | 0.440067 | 1.2:+26852327 | MS.gene063206:CDS |
| AGAGTGTTCCGCCGCCTAGT+GGG | 0.440878 | 1.2:-26851915 | None:intergenic |
| TTCATGGCGAGTTCAATTAT+CGG | 0.446341 | 1.2:+26852369 | MS.gene063206:CDS |
| TCTCTTTCTTCATTGGAATC+GGG | 0.450697 | 1.2:-26849628 | None:intergenic |
| CATCCAAAGAATTGCAACAT+TGG | 0.453546 | 1.2:+26851877 | MS.gene063206:CDS |
| CAATGTTGCAATTCTTTGGA+TGG | 0.454759 | 1.2:-26851876 | None:intergenic |
| ATTCCTGTCATGACTTCTGC+TGG | 0.463780 | 1.2:-26852456 | None:intergenic |
| ATAATAGCAACAAAAGTTTG+CGG | 0.464176 | 1.2:+26849875 | MS.gene063206:CDS |
| GTTTCAAATGAGACTTCATA+TGG | 0.472814 | 1.2:+26850774 | MS.gene063206:CDS |
| GAGAGTGTTCCGCCGCCTAG+TGG | 0.473729 | 1.2:-26851916 | None:intergenic |
| AACAATGCAACGTAGCGATC+TGG | 0.476923 | 1.2:-26850271 | None:intergenic |
| GTCCATGCAGCTAAAGTTGA+GGG | 0.478100 | 1.2:+26850810 | MS.gene063206:CDS |
| CTAGGCGGCGGAACACTCTC+AGG | 0.478621 | 1.2:+26851919 | MS.gene063206:CDS |
| TTATATCTTTCCATGTAGCC+AGG | 0.480910 | 1.2:-26851997 | None:intergenic |
| AGAAAAGTCTTAAGCGTCTC+GGG | 0.484155 | 1.2:+26849978 | MS.gene063206:CDS |
| TCAACAATCCATTGCAGTAC+CGG | 0.485809 | 1.2:+26848139 | MS.gene063206:CDS |
| GATATAACCAATCAATTTCA+CGG | 0.486738 | 1.2:+26852013 | MS.gene063206:CDS |
| GAATCTCTTCCCTGGCTACA+TGG | 0.491377 | 1.2:+26851987 | MS.gene063206:CDS |
| CTGATCTCTATATAGCTAGC+TGG | 0.502112 | 1.2:+26849663 | MS.gene063206:CDS |
| AATATCAGTGAAATCACTCT+TGG | 0.502115 | 1.2:+26848183 | MS.gene063206:CDS |
| TGTTCAACAAACGGCACACT+AGG | 0.508236 | 1.2:-26850328 | None:intergenic |
| CCAAGTTTCCGGTACTGCAA+TGG | 0.518284 | 1.2:-26848147 | None:intergenic |
| GTCATGACTTCTGCTGGTAA+AGG | 0.518717 | 1.2:-26852450 | None:intergenic |
| TCCGCCGCCTAGTGGGGAAT+AGG | 0.518898 | 1.2:-26851908 | None:intergenic |
| AACTATTAAGTATCTTGAGT+TGG | 0.528848 | 1.2:+26852287 | MS.gene063206:CDS |
| TATAGTGTTTAAAGGATGCT+AGG | 0.529693 | 1.2:-26852507 | None:intergenic |
| GCTTGCAACTGTTCAACAAA+CGG | 0.537666 | 1.2:-26850337 | None:intergenic |
| GTACTGCAATGGATTGTTGA+TGG | 0.539963 | 1.2:-26848136 | None:intergenic |
| GTCCCTCAACTTTAGCTGCA+TGG | 0.544863 | 1.2:-26850812 | None:intergenic |
| TCCTATTCCCCACTAGGCGG+CGG | 0.552022 | 1.2:+26851907 | MS.gene063206:CDS |
| AGCTGCTAAGAAGCCATGGC+CGG | 0.553641 | 1.2:+26847967 | None:intergenic |
| AGAACTTATCAATGAAGGAA+AGG | 0.566138 | 1.2:+26850366 | MS.gene063206:CDS |
| TTGCTATCCTATTCCCCACT+AGG | 0.566323 | 1.2:+26851901 | MS.gene063206:CDS |
| CTTGAGTTGGCCAAGAAACA+TGG | 0.566480 | 1.2:+26852300 | MS.gene063206:CDS |
| ATGCATCAGGTACGTTACAT+AGG | 0.569919 | 1.2:+26850750 | MS.gene063206:intron |
| TGGTGTGAGAGAATGAGAAA+TGG | 0.573879 | 1.2:-26848019 | None:intergenic |
| TGAGACTTCATATGGAGTGA+TGG | 0.573984 | 1.2:+26850782 | MS.gene063206:CDS |
| GAGAAAAGTCTTAAGCGTCT+CGG | 0.577051 | 1.2:+26849977 | MS.gene063206:CDS |
| GGAAGATTGAATCTCTTCCC+TGG | 0.579473 | 1.2:+26851979 | MS.gene063206:CDS |
| TGTCCATGCAGCTAAAGTTG+AGG | 0.581678 | 1.2:+26850809 | MS.gene063206:CDS |
| GAGTGTTCCGCCGCCTAGTG+GGG | 0.583136 | 1.2:-26851914 | None:intergenic |
| ATATAACCAATCAATTTCAC+GGG | 0.584104 | 1.2:+26852014 | MS.gene063206:CDS |
| TATATCTTTCCATGTAGCCA+GGG | 0.587281 | 1.2:-26851996 | None:intergenic |
| GAAAGAGCAGACACCGGCCA+TGG | 0.588039 | 1.2:-26847980 | None:intergenic |
| AATTATCGGTGCAACATCTG+TGG | 0.606607 | 1.2:+26852383 | MS.gene063206:CDS |
| TTACCAGCAGAAGTCATGAC+AGG | 0.613222 | 1.2:+26852453 | MS.gene063206:CDS |
| GACAAATATCAAAGAAAGTG+TGG | 0.614604 | 1.2:+26849955 | MS.gene063206:CDS |
| GAAGAAGATGCATTCTGAGG+AGG | 0.616503 | 1.2:+26848082 | MS.gene063206:CDS |
| GACGTTTGGGGAGCAAAACA+CGG | 0.625843 | 1.2:+26849225 | MS.gene063206:CDS |
| GTAGAAGAAGATGCATTCTG+AGG | 0.626526 | 1.2:+26848079 | MS.gene063206:CDS |
| CCTATGATCCTTCAAAATGG+AGG | 0.632626 | 1.2:+26850305 | MS.gene063206:CDS |
| AGAAATGGCAACAACGTCGG+AGG | 0.648860 | 1.2:-26848004 | None:intergenic |
| TTGATGGCGGCACAAACAAG+AGG | 0.649025 | 1.2:-26848120 | None:intergenic |
| GAAATCTCAATCTCGTGACA+AGG | 0.665936 | 1.2:+26849688 | MS.gene063206:CDS |
| ATGAGAAATGGCAACAACGT+CGG | 0.668018 | 1.2:-26848007 | None:intergenic |
| GGAGGAGAAAGAGCAGACAC+CGG | 0.670007 | 1.2:-26847986 | None:intergenic |
| CCAATGAAGAAAGAGACACA+AGG | 0.681685 | 1.2:+26849635 | MS.gene063206:CDS |
| TAATGCTCTTGATACTGCTG+AGG | 0.693085 | 1.2:+26849294 | MS.gene063206:CDS |
| TGAGGAGGACGAGAACTGTG+AGG | 0.701626 | 1.2:+26848097 | MS.gene063206:CDS |
| AATGTTTCAGATGACGTTTG+GGG | 0.705815 | 1.2:+26849213 | MS.gene063206:intron |
| CTGCAATGGATTGTTGATGG+CGG | 0.723159 | 1.2:-26848133 | None:intergenic |
| CTATCCTATTCCCCACTAGG+CGG | 0.752007 | 1.2:+26851904 | MS.gene063206:CDS |
| GTGTTGTTGAGAGACAGTGA+TGG | 0.758761 | 1.2:-26848039 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTTTCAAAAAAATAAA+AGG | + | chr1.2:26848822-26848841 | MS.gene063206:intron | 10.0% |
| !! | AAAAAATGAAAATTCTTGAT+TGG | - | chr1.2:26852246-26852265 | None:intergenic | 15.0% |
| !! | AAACAAAAAAGAATAATAAG+AGG | - | chr1.2:26848246-26848265 | None:intergenic | 15.0% |
| !! | AAGTTAATGTAAAAATTAGA+AGG | + | chr1.2:26848923-26848942 | MS.gene063206:intron | 15.0% |
| !! | TAAAAAATAAATGAAGAGAA+TGG | - | chr1.2:26849018-26849037 | None:intergenic | 15.0% |
| !! | TAAAATTCAAGTATTTGAAT+TGG | + | chr1.2:26849391-26849410 | MS.gene063206:intron | 15.0% |
| !! | TATAAAAATGTATAGGTTAT+TGG | + | chr1.2:26849102-26849121 | MS.gene063206:intron | 15.0% |
| !!! | AATGTATTACTTTTAAAACT+TGG | - | chr1.2:26851052-26851071 | None:intergenic | 15.0% |
| !!! | AATGTGATTTTTATTGTATT+AGG | + | chr1.2:26850149-26850168 | MS.gene063206:intron | 15.0% |
| !!! | AATTTTCATTTTTTCATGTT+CGG | + | chr1.2:26852252-26852271 | MS.gene063206:intron | 15.0% |
| !!! | ATGTATTACTTTTAAAACTT+GGG | - | chr1.2:26851051-26851070 | None:intergenic | 15.0% |
| !!! | CCTATACATTTTTATATAAA+AGG | - | chr1.2:26849098-26849117 | None:intergenic | 15.0% |
| !!! | CCTTTTATATAAAAATGTAT+AGG | + | chr1.2:26849095-26849114 | MS.gene063206:intron | 15.0% |
| !!! | TATTTTGGTTTTGAAAAAAA+TGG | - | chr1.2:26852077-26852096 | None:intergenic | 15.0% |
| !!! | TATTTTTGCAAATTTCTTAA+TGG | - | chr1.2:26851561-26851580 | None:intergenic | 15.0% |
| !!! | TTATTTAAAGTTGTTATTGA+GGG | + | chr1.2:26849035-26849054 | MS.gene063206:intron | 15.0% |
| !!! | TTTATTTAAAGTTGTTATTG+AGG | + | chr1.2:26849034-26849053 | MS.gene063206:intron | 15.0% |
| !! | TAACTATTACTATAGATTGA+AGG | - | chr1.2:26850545-26850564 | None:intergenic | 20.0% |
| !! | TATGATGCTTATTACTTTAT+TGG | + | chr1.2:26850059-26850078 | MS.gene063206:intron | 20.0% |
| !! | TATTATAATCTATGCACAAA+GGG | - | chr1.2:26849861-26849880 | None:intergenic | 20.0% |
| !!! | AAGTTTGGTTTTTATAACAT+TGG | + | chr1.2:26852184-26852203 | MS.gene063206:intron | 20.0% |
| !!! | TGTATTACTTTTAAAACTTG+GGG | - | chr1.2:26851050-26851069 | None:intergenic | 20.0% |
| ! | AAACAGACTAATAATCATGA+TGG | - | chr1.2:26849479-26849498 | None:intergenic | 25.0% |
| ! | AACACAAATCATATACTGTA+AGG | - | chr1.2:26850989-26851008 | None:intergenic | 25.0% |
| ! | AACTATTAAGTATCTTGAGT+TGG | + | chr1.2:26852287-26852306 | MS.gene063206:CDS | 25.0% |
| ! | ACAAATGATTACAGATAACA+TGG | + | chr1.2:26851179-26851198 | MS.gene063206:intron | 25.0% |
| ! | ACATGAAGAAGCTTAAAATA+AGG | - | chr1.2:26851811-26851830 | None:intergenic | 25.0% |
| ! | ACTTTACACCCTTTAATTAA+GGG | - | chr1.2:26851774-26851793 | None:intergenic | 25.0% |
| ! | ATAATAGCAACAAAAGTTTG+CGG | + | chr1.2:26849875-26849894 | MS.gene063206:CDS | 25.0% |
| ! | ATATAACCAATCAATTTCAC+GGG | + | chr1.2:26852014-26852033 | MS.gene063206:CDS | 25.0% |
| ! | ATTATAATCTATGCACAAAG+GGG | - | chr1.2:26849860-26849879 | None:intergenic | 25.0% |
| ! | CTATTATAATCTATGCACAA+AGG | - | chr1.2:26849862-26849881 | None:intergenic | 25.0% |
| ! | GATATAACCAATCAATTTCA+CGG | + | chr1.2:26852013-26852032 | MS.gene063206:CDS | 25.0% |
| ! | TACTTTACACCCTTTAATTA+AGG | - | chr1.2:26851775-26851794 | None:intergenic | 25.0% |
| ! | TAGAAAAGATAAAGCATGTT+AGG | - | chr1.2:26850401-26850420 | None:intergenic | 25.0% |
| ! | TAGAGAGTCCAAAATAAAAA+AGG | + | chr1.2:26851080-26851099 | MS.gene063206:intron | 25.0% |
| ! | TGAACATAAGTTTATAAGTG+CGG | - | chr1.2:26848853-26848872 | None:intergenic | 25.0% |
| ! | TGAGTTTCTTTATCTTACAA+GGG | + | chr1.2:26851260-26851279 | MS.gene063206:intron | 25.0% |
| ! | TTGAGTTTCTTTATCTTACA+AGG | + | chr1.2:26851259-26851278 | MS.gene063206:intron | 25.0% |
| ! | TTTCAAGAACTTATCAATGA+AGG | + | chr1.2:26850361-26850380 | MS.gene063206:CDS | 25.0% |
| !! | ATCACTTAATTTTGTATTGC+TGG | + | chr1.2:26850939-26850958 | MS.gene063206:intron | 25.0% |
| !! | GATTTAGATTTCAGTTGTTT+TGG | + | chr1.2:26849777-26849796 | MS.gene063206:intron | 25.0% |
| !! | TAAATCTCAATTTAGCTTCA+GGG | - | chr1.2:26849763-26849782 | None:intergenic | 25.0% |
| !! | TGATTTTCTGCTTTCATTAT+AGG | + | chr1.2:26850248-26850267 | MS.gene063206:intron | 25.0% |
| !! | TTTAAAACTTAAGTCAAGCA+TGG | + | chr1.2:26850116-26850135 | MS.gene063206:intron | 25.0% |
| !!! | TTGATTTGTTGCAAATTCAT+TGG | + | chr1.2:26850011-26850030 | MS.gene063206:CDS | 25.0% |
| !!! | TTTTTTATTTTGGACTCTCT+AGG | - | chr1.2:26851081-26851100 | None:intergenic | 25.0% |
| AAAAACCAAACTTAACTAGC+TGG | - | chr1.2:26852177-26852196 | None:intergenic | 30.0% | |
| AAAGTGACTTGAAAGTAAAG+TGG | + | chr1.2:26848388-26848407 | MS.gene063206:intron | 30.0% | |
| AATATCAGTGAAATCACTCT+TGG | + | chr1.2:26848183-26848202 | MS.gene063206:CDS | 30.0% | |
| AGAACTTATCAATGAAGGAA+AGG | + | chr1.2:26850366-26850385 | MS.gene063206:CDS | 30.0% | |
| AGATAAAGCATGTTAGGAAT+AGG | - | chr1.2:26850395-26850414 | None:intergenic | 30.0% | |
| AGTTTATGCTAATTGATGTG+TGG | - | chr1.2:26850680-26850699 | None:intergenic | 30.0% | |
| ATTCCTATGATCCTTCAAAA+TGG | + | chr1.2:26850302-26850321 | MS.gene063206:CDS | 30.0% | |
| ATTGGTTATCTTGTTAACCA+TGG | - | chr1.2:26852228-26852247 | None:intergenic | 30.0% | |
| CCAATTTATCCTTCAAACTT+GGG | + | chr1.2:26851347-26851366 | MS.gene063206:intron | 30.0% | |
| CTCAATTATGCATTTGAGAA+TGG | + | chr1.2:26849268-26849287 | MS.gene063206:CDS | 30.0% | |
| GACAAATATCAAAGAAAGTG+TGG | + | chr1.2:26849955-26849974 | MS.gene063206:CDS | 30.0% | |
| GAGTGATTTCACTGATATTA+AGG | - | chr1.2:26848182-26848201 | None:intergenic | 30.0% | |
| GATCATATTCATATGCACTT+TGG | + | chr1.2:26851369-26851388 | MS.gene063206:intron | 30.0% | |
| GATGCTTATTACTTTATTGG+TGG | + | chr1.2:26850062-26850081 | MS.gene063206:intron | 30.0% | |
| GATTACAGATAACATGGTTT+AGG | + | chr1.2:26851185-26851204 | MS.gene063206:intron | 30.0% | |
| GCACTTATAAACTTATGTTC+AGG | + | chr1.2:26848852-26848871 | MS.gene063206:intron | 30.0% | |
| GTATTAGTTATTCAGGAGTT+TGG | + | chr1.2:26849710-26849729 | MS.gene063206:intron | 30.0% | |
| GTTTCAAATGAGACTTCATA+TGG | + | chr1.2:26850774-26850793 | MS.gene063206:CDS | 30.0% | |
| TCAAAGACTTATGAATCACA+AGG | - | chr1.2:26850637-26850656 | None:intergenic | 30.0% | |
| TCCAATTTATCCTTCAAACT+TGG | + | chr1.2:26851346-26851365 | MS.gene063206:intron | 30.0% | |
| TCTCACAATCAGCAATTTAT+AGG | + | chr1.2:26851284-26851303 | MS.gene063206:intron | 30.0% | |
| TTAGACTATACTCTAAACCA+TGG | + | chr1.2:26852208-26852227 | MS.gene063206:intron | 30.0% | |
| TTATAATCTATGCACAAAGG+GGG | - | chr1.2:26849859-26849878 | None:intergenic | 30.0% | |
| TTTGTTGCAAATTCATTGGT+GGG | + | chr1.2:26850015-26850034 | MS.gene063206:intron | 30.0% | |
| ! | AAAGTAAAGTGGTTTGTGTT+TGG | + | chr1.2:26848399-26848418 | MS.gene063206:intron | 30.0% |
| ! | AAGTAAAGTGGTTTGTGTTT+GGG | + | chr1.2:26848400-26848419 | MS.gene063206:intron | 30.0% |
| ! | ATGCGTAAACTTTTAGTGTA+TGG | + | chr1.2:26851420-26851439 | MS.gene063206:intron | 30.0% |
| ! | ATGCTTTTACAACAACTGAA+CGG | + | chr1.2:26852427-26852446 | MS.gene063206:CDS | 30.0% |
| ! | ATTTGTTGCAAATTCATTGG+TGG | + | chr1.2:26850014-26850033 | MS.gene063206:intron | 30.0% |
| ! | CTAAATCTCAATTTAGCTTC+AGG | - | chr1.2:26849764-26849783 | None:intergenic | 30.0% |
| ! | TGACAAGGTATTAGTTATTC+AGG | + | chr1.2:26849703-26849722 | MS.gene063206:intron | 30.0% |
| !! | AATTCTAAAGCTGCAAAAAG+TGG | + | chr1.2:26851958-26851977 | MS.gene063206:CDS | 30.0% |
| !! | AGTTTTGCTTTGACTTCAAT+TGG | + | chr1.2:26848743-26848762 | MS.gene063206:intron | 30.0% |
| !! | GTTCAAAAACAATTTTAGCC+TGG | - | chr1.2:26850204-26850223 | None:intergenic | 30.0% |
| !! | TTTGTATTTTTGCATGCATC+AGG | + | chr1.2:26850737-26850756 | MS.gene063206:intron | 30.0% |
| !!! | ACTTTCAAGTCACTTTTACT+CGG | - | chr1.2:26848384-26848403 | None:intergenic | 30.0% |
| !!! | CAGGAAAGCCTTTTTTATTT+TGG | - | chr1.2:26851091-26851110 | None:intergenic | 30.0% |
| !!! | TTGGACGTTTTTGAAGTTTA+AGG | - | chr1.2:26851396-26851415 | None:intergenic | 30.0% |
| !!! | TTTTTTCATGTTCGGATTTC+AGG | + | chr1.2:26852260-26852279 | MS.gene063206:intron | 30.0% |
| AAGCCAATGTTGCAATTCTT+TGG | - | chr1.2:26851883-26851902 | None:intergenic | 35.0% | |
| AATGTTTCAGATGACGTTTG+GGG | + | chr1.2:26849213-26849232 | MS.gene063206:intron | 35.0% | |
| AGGTCAATCTCATTCAATGT+GGG | + | chr1.2:26848872-26848891 | MS.gene063206:intron | 35.0% | |
| ATAATTGAACTCGCCATGAA+TGG | - | chr1.2:26852369-26852388 | None:intergenic | 35.0% | |
| CAATCCAAGAACCAACTAAT+CGG | - | chr1.2:26848797-26848816 | None:intergenic | 35.0% | |
| CAATGTTGCAATTCTTTGGA+TGG | - | chr1.2:26851879-26851898 | None:intergenic | 35.0% | |
| CAATGTTTCAGATGACGTTT+GGG | + | chr1.2:26849212-26849231 | MS.gene063206:intron | 35.0% | |
| CACCATGACCCTTAATTAAA+GGG | + | chr1.2:26851763-26851782 | MS.gene063206:intron | 35.0% | |
| CATCCAAAGAATTGCAACAT+TGG | + | chr1.2:26851877-26851896 | MS.gene063206:CDS | 35.0% | |
| CCAAGTATTCAAAGATCTAC+AGG | - | chr1.2:26851110-26851129 | None:intergenic | 35.0% | |
| CCCAAGTTTGAAGGATAAAT+TGG | - | chr1.2:26851350-26851369 | None:intergenic | 35.0% | |
| CCTGTAGATCTTTGAATACT+TGG | + | chr1.2:26851107-26851126 | MS.gene063206:intron | 35.0% | |
| GAATATGATCCCAAGTTTGA+AGG | - | chr1.2:26851359-26851378 | None:intergenic | 35.0% | |
| GTACAAGTGTGAAAATGAGA+TGG | - | chr1.2:26849359-26849378 | None:intergenic | 35.0% | |
| GTCAAATGTTAACGTGATTG+TGG | + | chr1.2:26851468-26851487 | MS.gene063206:intron | 35.0% | |
| GTCTCTTTCTTCATTGGAAT+CGG | - | chr1.2:26849632-26849651 | None:intergenic | 35.0% | |
| GTGAAAATGAGATGGAATGA+AGG | - | chr1.2:26849351-26849370 | None:intergenic | 35.0% | |
| TAAAAGTTTACGCATCACGT+TGG | - | chr1.2:26851415-26851434 | None:intergenic | 35.0% | |
| TAGTCAAACGCAGAAAATAG+CGG | - | chr1.2:26851719-26851738 | None:intergenic | 35.0% | |
| TATATCTTTCCATGTAGCCA+GGG | - | chr1.2:26851999-26852018 | None:intergenic | 35.0% | |
| TATGTACCCGTGAAATTGAT+TGG | - | chr1.2:26852023-26852042 | None:intergenic | 35.0% | |
| TCACATACACATGTACAAGA+AGG | - | chr1.2:26850708-26850727 | None:intergenic | 35.0% | |
| TCACCAAACACAGAAATTGT+TGG | - | chr1.2:26848713-26848732 | None:intergenic | 35.0% | |
| TCATATACTGTAAGGACAAC+AGG | - | chr1.2:26850981-26851000 | None:intergenic | 35.0% | |
| TCTCTTTCTTCATTGGAATC+GGG | - | chr1.2:26849631-26849650 | None:intergenic | 35.0% | |
| TTATATCTTTCCATGTAGCC+AGG | - | chr1.2:26852000-26852019 | None:intergenic | 35.0% | |
| TTCATGGCGAGTTCAATTAT+CGG | + | chr1.2:26852369-26852388 | MS.gene063206:CDS | 35.0% | |
| TTCTGGATACTGACAATCTT+TGG | - | chr1.2:26850840-26850859 | None:intergenic | 35.0% | |
| ! | AGAAATAGTGATGATGAACC+AGG | + | chr1.2:26850183-26850202 | MS.gene063206:intron | 35.0% |
| ! | AGCAAATACAAAGTACTCCT+CGG | - | chr1.2:26850473-26850492 | None:intergenic | 35.0% |
| ! | CATCGATGTCTTCTTTTAGT+TGG | - | chr1.2:26852410-26852429 | None:intergenic | 35.0% |
| ! | GTAAGTACAGTTCTTTTCTG+AGG | + | chr1.2:26850895-26850914 | MS.gene063206:intron | 35.0% |
| !! | ATGTTTTGTTCCACTTCTAG+AGG | - | chr1.2:26848586-26848605 | None:intergenic | 35.0% |
| !! | TGTTTTGTTCCACTTCTAGA+GGG | - | chr1.2:26848585-26848604 | None:intergenic | 35.0% |
| !! | TTCATGCATGTTTTGTTCTG+CGG | + | chr1.2:26848328-26848347 | MS.gene063206:intron | 35.0% |
| !!! | TACAGGTCGGGTTTTTTTTA+AGG | - | chr1.2:26848617-26848636 | None:intergenic | 35.0% |
| !!! | TGCACCTTTGGAATCAATTT+TGG | + | chr1.2:26848558-26848577 | MS.gene063206:intron | 35.0% |
| !!! | TTTAGGATTTTAGTTGCCAG+AGG | + | chr1.2:26851202-26851221 | MS.gene063206:intron | 35.0% |
| AATTATCGGTGCAACATCTG+TGG | + | chr1.2:26852383-26852402 | MS.gene063206:CDS | 40.0% | |
| AGAAAAGTCTTAAGCGTCTC+GGG | + | chr1.2:26849978-26849997 | MS.gene063206:CDS | 40.0% | |
| AGATTGCAAGAGTTGTGTGT+AGG | - | chr1.2:26849538-26849557 | None:intergenic | 40.0% | |
| AGGAGTTAGACCATGTTTCT+TGG | - | chr1.2:26852313-26852332 | None:intergenic | 40.0% | |
| AGTTGTGTGTAGGGATAACT+TGG | - | chr1.2:26849528-26849547 | None:intergenic | 40.0% | |
| ATGAGAAATGGCAACAACGT+CGG | - | chr1.2:26848010-26848029 | None:intergenic | 40.0% | |
| ATGCATCAGGTACGTTACAT+AGG | + | chr1.2:26850750-26850769 | MS.gene063206:intron | 40.0% | |
| ATTGTCAAATAGCAGCTGTC+AGG | + | chr1.2:26851658-26851677 | MS.gene063206:intron | 40.0% | |
| CACCCTTTAATTAAGGGTCA+TGG | - | chr1.2:26851768-26851787 | None:intergenic | 40.0% | |
| CAGGTCAATCTCATTCAATG+TGG | + | chr1.2:26848871-26848890 | MS.gene063206:intron | 40.0% | |
| CCAATGAAGAAAGAGACACA+AGG | + | chr1.2:26849635-26849654 | MS.gene063206:CDS | 40.0% | |
| CCTATGATCCTTCAAAATGG+AGG | + | chr1.2:26850305-26850324 | MS.gene063206:CDS | 40.0% | |
| CCTTGTGTCTCTTTCTTCAT+TGG | - | chr1.2:26849638-26849657 | None:intergenic | 40.0% | |
| CGTAATCAATTCTGCACCTT+TGG | + | chr1.2:26848546-26848565 | MS.gene063206:intron | 40.0% | |
| CTAAAGAGTAGCATACTCCT+AGG | - | chr1.2:26848665-26848684 | None:intergenic | 40.0% | |
| CTGAACCAGCTAGTTAAGTT+TGG | + | chr1.2:26852169-26852188 | MS.gene063206:intron | 40.0% | |
| CTGAGAGATCGAGTTACTTA+CGG | + | chr1.2:26849903-26849922 | MS.gene063206:CDS | 40.0% | |
| CTGATCTCTATATAGCTAGC+TGG | + | chr1.2:26849663-26849682 | MS.gene063206:CDS | 40.0% | |
| GAAATCTCAATCTCGTGACA+AGG | + | chr1.2:26849688-26849707 | MS.gene063206:CDS | 40.0% | |
| GAGAAAAGTCTTAAGCGTCT+CGG | + | chr1.2:26849977-26849996 | MS.gene063206:CDS | 40.0% | |
| GATTGCAAGAGTTGTGTGTA+GGG | - | chr1.2:26849537-26849556 | None:intergenic | 40.0% | |
| GCAATGTTTCAGATGACGTT+TGG | + | chr1.2:26849211-26849230 | MS.gene063206:intron | 40.0% | |
| GCACCATGACCCTTAATTAA+AGG | + | chr1.2:26851762-26851781 | MS.gene063206:intron | 40.0% | |
| GCTAAAAATTCCCCAAAAGC+AGG | - | chr1.2:26851320-26851339 | None:intergenic | 40.0% | |
| GCTTGCAACTGTTCAACAAA+CGG | - | chr1.2:26850340-26850359 | None:intergenic | 40.0% | |
| GGTCAATCTCATTCAATGTG+GGG | + | chr1.2:26848873-26848892 | MS.gene063206:intron | 40.0% | |
| GTAGAAGAAGATGCATTCTG+AGG | + | chr1.2:26848079-26848098 | MS.gene063206:CDS | 40.0% | |
| GTGCCAACAATTTCTGTGTT+TGG | + | chr1.2:26848707-26848726 | MS.gene063206:intron | 40.0% | |
| TAATGCTCTTGATACTGCTG+AGG | + | chr1.2:26849294-26849313 | MS.gene063206:CDS | 40.0% | |
| TCAACAATCCATTGCAGTAC+CGG | + | chr1.2:26848139-26848158 | MS.gene063206:CDS | 40.0% | |
| TCACGGGTACATAATACTTC+TGG | + | chr1.2:26852030-26852049 | MS.gene063206:intron | 40.0% | |
| TGAGACTTCATATGGAGTGA+TGG | + | chr1.2:26850782-26850801 | MS.gene063206:CDS | 40.0% | |
| TGAGAGATCGAGTTACTTAC+GGG | + | chr1.2:26849904-26849923 | MS.gene063206:CDS | 40.0% | |
| TGGTGTGAGAGAATGAGAAA+TGG | - | chr1.2:26848022-26848041 | None:intergenic | 40.0% | |
| TTGAAGGTGGCAAGAGAAAT+AGG | + | chr1.2:26851232-26851251 | MS.gene063206:intron | 40.0% | |
| ! | AGCTGGTTCAGTTATTTGAG+CGG | - | chr1.2:26852160-26852179 | None:intergenic | 40.0% |
| ! | CTAGGAGTATGCTACTCTTT+AGG | + | chr1.2:26848663-26848682 | MS.gene063206:intron | 40.0% |
| ! | TGCTGGTACGATGTCTATTT+TGG | - | chr1.2:26852092-26852111 | None:intergenic | 40.0% |
| ! | TGTTTTCGCAGTTGATCTTG+TGG | + | chr1.2:26851846-26851865 | MS.gene063206:intron | 40.0% |
| !! | AGTACAGTTCTTTTCTGAGG+TGG | + | chr1.2:26850898-26850917 | MS.gene063206:intron | 40.0% |
| !! | CATACATTCTCCTGCTTTTG+GGG | + | chr1.2:26851307-26851326 | MS.gene063206:intron | 40.0% |
| !! | CCTCCATTTTGAAGGATCAT+AGG | - | chr1.2:26850308-26850327 | None:intergenic | 40.0% |
| !! | CTTGTGAGAAGTCGTTTTGA+AGG | + | chr1.2:26850873-26850892 | MS.gene063206:CDS | 40.0% |
| !! | GCATACATTCTCCTGCTTTT+GGG | + | chr1.2:26851306-26851325 | MS.gene063206:intron | 40.0% |
| !! | GTACTGCAATGGATTGTTGA+TGG | - | chr1.2:26848139-26848158 | None:intergenic | 40.0% |
| !! | GTTTTGTTCCACTTCTAGAG+GGG | - | chr1.2:26848584-26848603 | None:intergenic | 40.0% |
| AACAATGCAACGTAGCGATC+TGG | - | chr1.2:26850274-26850293 | None:intergenic | 45.0% | |
| AATTTACCCCACTCCAAGTG+AGG | - | chr1.2:26851529-26851548 | None:intergenic | 45.0% | |
| ACACAGAAATTGTTGGCACC+TGG | - | chr1.2:26848706-26848725 | None:intergenic | 45.0% | |
| ACAGAAATTGTTGGCACCTG+GGG | - | chr1.2:26848704-26848723 | None:intergenic | 45.0% | |
| ATCGTACCAGCAAGACTTCT+GGG | + | chr1.2:26852100-26852119 | MS.gene063206:intron | 45.0% | |
| ATTCCTGTCATGACTTCTGC+TGG | - | chr1.2:26852459-26852478 | None:intergenic | 45.0% | |
| ATTTACCCCACTCCAAGTGA+GGG | - | chr1.2:26851528-26851547 | None:intergenic | 45.0% | |
| CAAGCAAGCTATAGCTGTTC+TGG | - | chr1.2:26850857-26850876 | None:intergenic | 45.0% | |
| CACAGAAATTGTTGGCACCT+GGG | - | chr1.2:26848705-26848724 | None:intergenic | 45.0% | |
| GATCGCTACGTTGCATTGTT+TGG | + | chr1.2:26850274-26850293 | MS.gene063206:CDS | 45.0% | |
| GGATTGATCCTCCGATTAGT+TGG | + | chr1.2:26848783-26848802 | MS.gene063206:intron | 45.0% | |
| GTCATGACTTCTGCTGGTAA+AGG | - | chr1.2:26852453-26852472 | None:intergenic | 45.0% | |
| GTCCATGCAGCTAAAGTTGA+GGG | + | chr1.2:26850810-26850829 | MS.gene063206:CDS | 45.0% | |
| TCCAAGAACCAACTAATCGG+AGG | - | chr1.2:26848794-26848813 | None:intergenic | 45.0% | |
| TGTCCATGCAGCTAAAGTTG+AGG | + | chr1.2:26850809-26850828 | MS.gene063206:CDS | 45.0% | |
| TGTGAGAGATCGTCCATTCA+TGG | + | chr1.2:26852353-26852372 | MS.gene063206:CDS | 45.0% | |
| TGTTCAACAAACGGCACACT+AGG | - | chr1.2:26850331-26850350 | None:intergenic | 45.0% | |
| TTACCAGCAGAAGTCATGAC+AGG | + | chr1.2:26852453-26852472 | MS.gene063206:CDS | 45.0% | |
| TTGCTATCCTATTCCCCACT+AGG | + | chr1.2:26851901-26851920 | MS.gene063206:CDS | 45.0% | |
| TTGGCGCACTAGTGAATGAT+AGG | + | chr1.2:26848762-26848781 | MS.gene063206:intron | 45.0% | |
| TTTGAGCGGTTCAATTGCGA+TGG | - | chr1.2:26852146-26852165 | None:intergenic | 45.0% | |
| ! | ACACTAGGCCTCCATTTTGA+AGG | - | chr1.2:26850316-26850335 | None:intergenic | 45.0% |
| ! | GAAGAAGATGCATTCTGAGG+AGG | + | chr1.2:26848082-26848101 | MS.gene063206:CDS | 45.0% |
| ! | GGACAATGCAGACATTTTGC+GGG | + | chr1.2:26849925-26849944 | MS.gene063206:CDS | 45.0% |
| ! | GGCATACATTCTCCTGCTTT+TGG | + | chr1.2:26851305-26851324 | MS.gene063206:intron | 45.0% |
| ! | GGGACAATGCAGACATTTTG+CGG | + | chr1.2:26849924-26849943 | MS.gene063206:CDS | 45.0% |
| ! | GGGGCCAAAATTGATTCCAA+AGG | - | chr1.2:26848565-26848584 | None:intergenic | 45.0% |
| ! | GTGTTGTTGAGAGACAGTGA+TGG | - | chr1.2:26848042-26848061 | None:intergenic | 45.0% |
| ! | TCCTCCGATTAGTTGGTTCT+TGG | + | chr1.2:26848790-26848809 | MS.gene063206:intron | 45.0% |
| !! | AATTTTGGCCCCTCTAGAAG+TGG | + | chr1.2:26848573-26848592 | MS.gene063206:intron | 45.0% |
| !! | CTGCAATGGATTGTTGATGG+CGG | - | chr1.2:26848136-26848155 | None:intergenic | 45.0% |
| !! | CTTGAGTTGGCCAAGAAACA+TGG | + | chr1.2:26852300-26852319 | MS.gene063206:CDS | 45.0% |
| !! | TTTTAGTTGCCAGAGGTGCA+AGG | + | chr1.2:26851209-26851228 | MS.gene063206:intron | 45.0% |
| !!! | GTTTTGACTTAGAGAAGCCG+AGG | + | chr1.2:26850453-26850472 | MS.gene063206:intron | 45.0% |
| ACTCCAAGTGAGGGTTCAAC+TGG | - | chr1.2:26851519-26851538 | None:intergenic | 50.0% | |
| AGAAATGGCAACAACGTCGG+AGG | - | chr1.2:26848007-26848026 | None:intergenic | 50.0% | |
| AGTCCAGTTGAACCCTCACT+TGG | + | chr1.2:26851513-26851532 | MS.gene063206:intron | 50.0% | |
| AGTTGAACCCTCACTTGGAG+TGG | + | chr1.2:26851518-26851537 | MS.gene063206:intron | 50.0% | |
| CAGAAATTGTTGGCACCTGG+GGG | - | chr1.2:26848703-26848722 | None:intergenic | 50.0% | |
| CATCGTACCAGCAAGACTTC+TGG | + | chr1.2:26852099-26852118 | MS.gene063206:intron | 50.0% | |
| CCAAGTTTCCGGTACTGCAA+TGG | - | chr1.2:26848150-26848169 | None:intergenic | 50.0% | |
| CTATCCTATTCCCCACTAGG+CGG | + | chr1.2:26851904-26851923 | MS.gene063206:CDS | 50.0% | |
| GAATCTCTTCCCTGGCTACA+TGG | + | chr1.2:26851987-26852006 | MS.gene063206:CDS | 50.0% | |
| GACGTTTGGGGAGCAAAACA+CGG | + | chr1.2:26849225-26849244 | MS.gene063206:CDS | 50.0% | |
| GGTCAGAGTCACCAAGTTTC+CGG | - | chr1.2:26848161-26848180 | None:intergenic | 50.0% | |
| GTCCCTCAACTTTAGCTGCA+TGG | - | chr1.2:26850815-26850834 | None:intergenic | 50.0% | |
| GTGTCAAGTTTGAATCCCCC+AGG | + | chr1.2:26848685-26848704 | MS.gene063206:intron | 50.0% | |
| GTTGAACCCTCACTTGGAGT+GGG | + | chr1.2:26851519-26851538 | MS.gene063206:intron | 50.0% | |
| TTGAACCCTCACTTGGAGTG+GGG | + | chr1.2:26851520-26851539 | MS.gene063206:intron | 50.0% | |
| ! | CCATTGCAGTACCGGAAACT+TGG | + | chr1.2:26848147-26848166 | MS.gene063206:CDS | 50.0% |
| !! | TTGATGGCGGCACAAACAAG+AGG | - | chr1.2:26848123-26848142 | None:intergenic | 50.0% |
| AAAACCCGACCTGTAACCCC+AGG | + | chr1.2:26848622-26848641 | MS.gene063206:intron | 55.0% | |
| AAACCCGACCTGTAACCCCA+GGG | + | chr1.2:26848623-26848642 | MS.gene063206:intron | 55.0% | |
| AATCCAAGCGCGAGCTGAAC+AGG | - | chr1.2:26852333-26852352 | None:intergenic | 55.0% | |
| AATCCCTGGGGTTACAGGTC+GGG | - | chr1.2:26848629-26848648 | None:intergenic | 55.0% | |
| ACCAGCAAGACTTCTGGGTC+AGG | + | chr1.2:26852105-26852124 | MS.gene063206:intron | 55.0% | |
| ACCTGACCCAGAAGTCTTGC+TGG | - | chr1.2:26852109-26852128 | None:intergenic | 55.0% | |
| CAATCCCTGGGGTTACAGGT+CGG | - | chr1.2:26848630-26848649 | None:intergenic | 55.0% | |
| CACCTTCAACCTTGCACCTC+TGG | - | chr1.2:26851221-26851240 | None:intergenic | 55.0% | |
| CATACTCCTAGGTCACCACC+AGG | - | chr1.2:26848654-26848673 | None:intergenic | 55.0% | |
| GGAGGAGAAAGAGCAGACAC+CGG | - | chr1.2:26847989-26848008 | None:intergenic | 55.0% | |
| TGAGGAGGACGAGAACTGTG+AGG | + | chr1.2:26848097-26848116 | MS.gene063206:CDS | 55.0% | |
| ! | CAGAGGTGCAAGGTTGAAGG+TGG | + | chr1.2:26851219-26851238 | MS.gene063206:intron | 55.0% |
| ! | TGCCAGAGGTGCAAGGTTGA+AGG | + | chr1.2:26851216-26851235 | MS.gene063206:intron | 55.0% |
| ACTCCTGTTCAGCTCGCGCT+TGG | + | chr1.2:26852327-26852346 | MS.gene063206:CDS | 60.0% | |
| AGGCCAATCCCTGGGGTTAC+AGG | - | chr1.2:26848634-26848653 | None:intergenic | 60.0% | |
| CGACCTGTAACCCCAGGGAT+TGG | + | chr1.2:26848628-26848647 | MS.gene063206:intron | 60.0% | |
| TCACCACCAGGCCAATCCCT+GGG | - | chr1.2:26848642-26848661 | None:intergenic | 60.0% | |
| TCCTATTCCCCACTAGGCGG+CGG | + | chr1.2:26851907-26851926 | MS.gene063206:CDS | 60.0% | |
| ! | AGAGTGTTCCGCCGCCTAGT+GGG | - | chr1.2:26851918-26851937 | None:intergenic | 60.0% |
| !! | GATTGGCCTGGTGGTGACCT+AGG | + | chr1.2:26848645-26848664 | MS.gene063206:intron | 60.0% |
| !! | TGTAACCCCAGGGATTGGCC+TGG | + | chr1.2:26848633-26848652 | MS.gene063206:intron | 60.0% |
| CACCACCAGGCCAATCCCTG+GGG | - | chr1.2:26848641-26848660 | None:intergenic | 65.0% | |
| CTAGGCGGCGGAACACTCTC+AGG | + | chr1.2:26851919-26851938 | MS.gene063206:CDS | 65.0% | |
| GAGTGTTCCGCCGCCTAGTG+GGG | - | chr1.2:26851917-26851936 | None:intergenic | 65.0% | |
| GTCACCACCAGGCCAATCCC+TGG | - | chr1.2:26848643-26848662 | None:intergenic | 65.0% | |
| TCCGCCGCCTAGTGGGGAAT+AGG | - | chr1.2:26851911-26851930 | None:intergenic | 65.0% | |
| !! | AACCCCAGGGATTGGCCTGG+TGG | + | chr1.2:26848636-26848655 | MS.gene063206:intron | 65.0% |
| !! | GAGAGTGTTCCGCCGCCTAG+TGG | - | chr1.2:26851919-26851938 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 26847982 | 26852521 | 26847982 | ID=MS.gene063206 |
| chr1.2 | mRNA | 26847982 | 26852521 | 26847982 | ID=MS.gene063206.t1;Parent=MS.gene063206 |
| chr1.2 | exon | 26847982 | 26848209 | 26847982 | ID=MS.gene063206.t1.exon1;Parent=MS.gene063206.t1 |
| chr1.2 | CDS | 26847982 | 26848209 | 26847982 | ID=cds.MS.gene063206.t1;Parent=MS.gene063206.t1 |
| chr1.2 | exon | 26849223 | 26849318 | 26849223 | ID=MS.gene063206.t1.exon2;Parent=MS.gene063206.t1 |
| chr1.2 | CDS | 26849223 | 26849318 | 26849223 | ID=cds.MS.gene063206.t1;Parent=MS.gene063206.t1 |
| chr1.2 | exon | 26849626 | 26849709 | 26849626 | ID=MS.gene063206.t1.exon3;Parent=MS.gene063206.t1 |
| chr1.2 | CDS | 26849626 | 26849709 | 26849626 | ID=cds.MS.gene063206.t1;Parent=MS.gene063206.t1 |
| chr1.2 | exon | 26849872 | 26850032 | 26849872 | ID=MS.gene063206.t1.exon4;Parent=MS.gene063206.t1 |
| chr1.2 | CDS | 26849872 | 26850032 | 26849872 | ID=cds.MS.gene063206.t1;Parent=MS.gene063206.t1 |
| chr1.2 | exon | 26850270 | 26850387 | 26850270 | ID=MS.gene063206.t1.exon5;Parent=MS.gene063206.t1 |
| chr1.2 | CDS | 26850270 | 26850387 | 26850270 | ID=cds.MS.gene063206.t1;Parent=MS.gene063206.t1 |
| chr1.2 | exon | 26850759 | 26850894 | 26850759 | ID=MS.gene063206.t1.exon6;Parent=MS.gene063206.t1 |
| chr1.2 | CDS | 26850759 | 26850894 | 26850759 | ID=cds.MS.gene063206.t1;Parent=MS.gene063206.t1 |
| chr1.2 | exon | 26851857 | 26852035 | 26851857 | ID=MS.gene063206.t1.exon7;Parent=MS.gene063206.t1 |
| chr1.2 | CDS | 26851857 | 26852035 | 26851857 | ID=cds.MS.gene063206.t1;Parent=MS.gene063206.t1 |
| chr1.2 | exon | 26852282 | 26852521 | 26852282 | ID=MS.gene063206.t1.exon8;Parent=MS.gene063206.t1 |
| chr1.2 | CDS | 26852282 | 26852521 | 26852282 | ID=cds.MS.gene063206.t1;Parent=MS.gene063206.t1 |
| Gene Sequence |
| Protein sequence |
