Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062226.t1 | KEH42831.1 | 97.2 | 326 | 9 | 0 | 1 | 326 | 1 | 326 | 7.10E-177 | 629.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062226.t1 | O82616 | 78.2 | 317 | 69 | 0 | 7 | 323 | 5 | 321 | 5.2e-144 | 511.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062226.t1 | A0A072VMK0 | 97.2 | 326 | 9 | 0 | 1 | 326 | 1 | 326 | 5.1e-177 | 629.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene062226 | 0.804384 | 2.22E-49 | -1.69E-46 |
| MS.gene049150 | MS.gene062226 | 0.824639 | 7.24E-54 | -1.69E-46 |
| MS.gene049151 | MS.gene062226 | 0.838874 | 2.22E-57 | -1.69E-46 |
| MS.gene049153 | MS.gene062226 | 0.830346 | 3.09E-55 | -1.69E-46 |
| MS.gene049346 | MS.gene062226 | 0.840089 | 1.07E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene062226 | 0.849984 | 2.28E-60 | -1.69E-46 |
| MS.gene049910 | MS.gene062226 | 0.83318 | 6.18E-56 | -1.69E-46 |
| MS.gene049915 | MS.gene062226 | 0.85734 | 1.75E-62 | -1.69E-46 |
| MS.gene050128 | MS.gene062226 | 0.810709 | 1.01E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene062226 | 0.838252 | 3.21E-57 | -1.69E-46 |
| MS.gene050398 | MS.gene062226 | 0.803163 | 3.97E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene062226 | 0.816777 | 4.64E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene062226 | 0.814359 | 1.60E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene062226 | 0.841942 | 3.50E-58 | -1.69E-46 |
| MS.gene051983 | MS.gene062226 | 0.818332 | 2.07E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene062226 | 0.853551 | 2.22E-61 | -1.69E-46 |
| MS.gene052178 | MS.gene062226 | 0.819045 | 1.43E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene062226 | 0.826657 | 2.41E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene062226 | 0.832693 | 8.17E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene062226 | 0.809072 | 2.27E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene062226 | 0.861664 | 8.75E-64 | -1.69E-46 |
| MS.gene053494 | MS.gene062226 | 0.801733 | 7.83E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene062226 | 0.842977 | 1.86E-58 | -1.69E-46 |
| MS.gene053836 | MS.gene062226 | 0.846865 | 1.66E-59 | -1.69E-46 |
| MS.gene054184 | MS.gene062226 | 0.838447 | 2.86E-57 | -1.69E-46 |
| MS.gene054185 | MS.gene062226 | 0.837332 | 5.53E-57 | -1.69E-46 |
| MS.gene054349 | MS.gene062226 | 0.831445 | 1.66E-55 | -1.69E-46 |
| MS.gene054473 | MS.gene062226 | 0.806625 | 7.51E-50 | -1.69E-46 |
| MS.gene054542 | MS.gene062226 | 0.840586 | 7.95E-58 | -1.69E-46 |
| MS.gene054930 | MS.gene062226 | 0.824571 | 7.51E-54 | -1.69E-46 |
| MS.gene054983 | MS.gene062226 | 0.825957 | 3.53E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene062226 | 0.838164 | 3.38E-57 | -1.69E-46 |
| MS.gene05553 | MS.gene062226 | 0.814441 | 1.54E-51 | -1.69E-46 |
| MS.gene055604 | MS.gene062226 | 0.811202 | 7.88E-51 | -1.69E-46 |
| MS.gene056447 | MS.gene062226 | 0.802619 | 5.15E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene062226 | 0.819741 | 9.90E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene062226 | 0.812569 | 3.97E-51 | -1.69E-46 |
| MS.gene057121 | MS.gene062226 | 0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene057448 | MS.gene062226 | 0.802255 | 6.12E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene062226 | 0.800979 | 1.12E-48 | -1.69E-46 |
| MS.gene057754 | MS.gene062226 | 0.830298 | 3.18E-55 | -1.69E-46 |
| MS.gene057796 | MS.gene062226 | 0.812479 | 4.15E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene062226 | 0.847835 | 8.99E-60 | -1.69E-46 |
| MS.gene05811 | MS.gene062226 | 0.84289 | 1.96E-58 | -1.69E-46 |
| MS.gene058139 | MS.gene062226 | 0.801918 | 7.18E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene062226 | 0.837666 | 4.54E-57 | -1.69E-46 |
| MS.gene058710 | MS.gene062226 | 0.820104 | 8.18E-53 | -1.69E-46 |
| MS.gene058749 | MS.gene062226 | 0.816933 | 4.28E-52 | -1.69E-46 |
| MS.gene058833 | MS.gene062226 | 0.806919 | 6.51E-50 | -1.69E-46 |
| MS.gene058845 | MS.gene062226 | 0.817979 | 2.49E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene062226 | 0.805001 | 1.65E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene062226 | 0.836357 | 9.81E-57 | -1.69E-46 |
| MS.gene059285 | MS.gene062226 | 0.836929 | 7.01E-57 | -1.69E-46 |
| MS.gene059421 | MS.gene062226 | 0.816303 | 5.93E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene062226 | 0.81119 | 7.92E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene062226 | 0.816278 | 6.00E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene062226 | 0.826108 | 3.25E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene062226 | 0.81886 | 1.57E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene062226 | 0.852497 | 4.44E-61 | -1.69E-46 |
| MS.gene059894 | MS.gene062226 | 0.84241 | 2.63E-58 | -1.69E-46 |
| MS.gene059899 | MS.gene062226 | 0.803569 | 3.27E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene062226 | 0.823642 | 1.24E-53 | -1.69E-46 |
| MS.gene060495 | MS.gene062226 | 0.821702 | 3.51E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene062226 | 0.871472 | 6.66E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85276 | MS.gene062226 | PPI |
| MS.gene46881 | MS.gene062226 | PPI |
| MS.gene039628 | MS.gene062226 | PPI |
| MS.gene062226 | MS.gene003877 | PPI |
| MS.gene032177 | MS.gene062226 | PPI |
| MS.gene61079 | MS.gene062226 | PPI |
| MS.gene062226 | MS.gene93729 | PPI |
| MS.gene062226 | MS.gene052011 | PPI |
| MS.gene28335 | MS.gene062226 | PPI |
| MS.gene63929 | MS.gene062226 | PPI |
| MS.gene056386 | MS.gene062226 | PPI |
| MS.gene046213 | MS.gene062226 | PPI |
| MS.gene062226 | MS.gene98726 | PPI |
| MS.gene88462 | MS.gene062226 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062226.t1 | MTR_1g076850 | 97.239 | 326 | 9 | 0 | 1 | 326 | 1 | 326 | 0.0 | 651 |
| MS.gene062226.t1 | MTR_2g098950 | 67.089 | 316 | 104 | 0 | 8 | 323 | 14 | 329 | 5.62e-161 | 452 |
| MS.gene062226.t1 | MTR_4g067310 | 66.562 | 317 | 106 | 0 | 8 | 324 | 15 | 331 | 1.38e-157 | 444 |
| MS.gene062226.t1 | MTR_6g089480 | 64.401 | 309 | 108 | 2 | 15 | 321 | 1 | 309 | 1.38e-149 | 423 |
| MS.gene062226.t1 | MTR_1g101950 | 63.492 | 315 | 113 | 2 | 8 | 320 | 23 | 337 | 1.36e-148 | 421 |
| MS.gene062226.t1 | MTR_5g079460 | 66.129 | 310 | 104 | 1 | 7 | 315 | 66 | 375 | 7.57e-145 | 414 |
| MS.gene062226.t1 | MTR_6g089480 | 65.809 | 272 | 91 | 2 | 15 | 284 | 1 | 272 | 4.03e-132 | 377 |
| MS.gene062226.t1 | MTR_6g089480 | 66.296 | 270 | 89 | 2 | 15 | 282 | 1 | 270 | 5.48e-132 | 377 |
| MS.gene062226.t1 | MTR_7g075860 | 58.199 | 311 | 126 | 3 | 7 | 313 | 40 | 350 | 4.95e-129 | 373 |
| MS.gene062226.t1 | MTR_1g069490 | 48.916 | 323 | 137 | 3 | 5 | 325 | 107 | 403 | 7.39e-103 | 308 |
| MS.gene062226.t1 | MTR_1g057810 | 50.158 | 317 | 146 | 4 | 5 | 317 | 250 | 558 | 1.22e-101 | 310 |
| MS.gene062226.t1 | MTR_1g069745 | 50.865 | 289 | 128 | 4 | 34 | 320 | 9 | 285 | 6.33e-99 | 294 |
| MS.gene062226.t1 | MTR_1g105150 | 47.003 | 317 | 142 | 5 | 5 | 317 | 250 | 544 | 3.77e-89 | 277 |
| MS.gene062226.t1 | MTR_1g054730 | 44.689 | 273 | 122 | 2 | 48 | 320 | 144 | 387 | 3.13e-73 | 231 |
| MS.gene062226.t1 | MTR_5g044990 | 31.897 | 348 | 198 | 5 | 7 | 318 | 209 | 553 | 3.33e-53 | 184 |
| MS.gene062226.t1 | MTR_4g019165 | 35.220 | 318 | 173 | 4 | 34 | 318 | 133 | 450 | 1.06e-52 | 180 |
| MS.gene062226.t1 | MTR_0046s0180 | 52.427 | 103 | 49 | 0 | 218 | 320 | 7 | 109 | 7.44e-35 | 123 |
| MS.gene062226.t1 | MTR_1g070375 | 24.646 | 353 | 224 | 9 | 3 | 324 | 70 | 411 | 1.33e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062226.t1 | AT4G10260 | 78.233 | 317 | 69 | 0 | 7 | 323 | 5 | 321 | 0.0 | 526 |
| MS.gene062226.t1 | AT3G59480 | 68.471 | 314 | 99 | 0 | 8 | 321 | 10 | 323 | 2.59e-163 | 458 |
| MS.gene062226.t1 | AT1G06020 | 67.610 | 318 | 103 | 0 | 8 | 325 | 10 | 327 | 5.22e-161 | 453 |
| MS.gene062226.t1 | AT1G06030 | 67.500 | 320 | 104 | 0 | 2 | 321 | 5 | 324 | 3.01e-160 | 451 |
| MS.gene062226.t1 | AT2G31390 | 67.197 | 314 | 103 | 0 | 8 | 321 | 9 | 322 | 7.14e-160 | 449 |
| MS.gene062226.t1 | AT1G66430 | 64.062 | 320 | 112 | 2 | 3 | 319 | 58 | 377 | 5.18e-151 | 429 |
| MS.gene062226.t1 | AT5G51830 | 63.272 | 324 | 117 | 2 | 5 | 326 | 20 | 343 | 5.62e-151 | 427 |
| MS.gene062226.t1 | AT5G51830 | 63.272 | 324 | 117 | 2 | 5 | 326 | 20 | 343 | 5.62e-151 | 427 |
| MS.gene062226.t1 | AT3G54090 | 34.349 | 361 | 189 | 7 | 7 | 320 | 102 | 461 | 7.37e-57 | 191 |
| MS.gene062226.t1 | AT1G50390 | 52.663 | 169 | 51 | 1 | 153 | 321 | 1 | 140 | 2.08e-53 | 172 |
| MS.gene062226.t1 | AT1G69200 | 31.307 | 329 | 190 | 4 | 7 | 300 | 205 | 532 | 9.49e-47 | 167 |
| MS.gene062226.t1 | AT1G06730 | 24.917 | 301 | 205 | 6 | 40 | 327 | 132 | 424 | 2.30e-12 | 68.2 |
Find 75 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAAGTCTCTCTCAATTT+TGG | 0.120131 | 1.1:-57628799 | None:intergenic |
| ACCTTCTCTAGCAGCTTTCA+TGG | 0.275867 | 1.1:-57627561 | None:intergenic |
| GGCAGCATTGCCACCAAGTT+TGG | 0.291331 | 1.1:-57626640 | None:intergenic |
| AAGCATACCTCAAATATAGA+AGG | 0.345785 | 1.1:-57628645 | None:intergenic |
| AATACAAAGATATTCCATTA+TGG | 0.367235 | 1.1:+57627491 | MS.gene062226:CDS |
| ACAGCACAAGCCACATTGGC+AGG | 0.372362 | 1.1:-57626615 | None:intergenic |
| TGGCTCTGAAATAAGACTAA+TGG | 0.378078 | 1.1:-57627516 | None:intergenic |
| TCTGCTGAGGCTGCTAGGTC+TGG | 0.380493 | 1.1:+57627632 | MS.gene062226:CDS |
| ACATTGGCAGGGGCACCGCC+AGG | 0.390542 | 1.1:-57626603 | None:intergenic |
| TGTCCTATGATCCAAATGTT+AGG | 0.394379 | 1.1:+57627594 | MS.gene062226:CDS |
| TAAGACTAATGGATCCATAA+TGG | 0.395043 | 1.1:-57627505 | None:intergenic |
| ATTTCAAAGGAAAGTTTAGT+TGG | 0.395477 | 1.1:-57628923 | None:intergenic |
| CAGGTAGGGGATGATGAATT+TGG | 0.396796 | 1.1:+57627278 | MS.gene062226:intron |
| AAGCCTAACATTTGGATCAT+AGG | 0.402363 | 1.1:-57627597 | None:intergenic |
| TCGCCGAATGATATCACTAA+TGG | 0.409144 | 1.1:-57626510 | None:intergenic |
| GGTCTGGAATCAAAAGCATT+TGG | 0.412730 | 1.1:+57627648 | MS.gene062226:CDS |
| GCTTGTGCTGTGTCCAAACT+TGG | 0.436119 | 1.1:+57626627 | MS.gene062226:CDS |
| GCCATGCAGATCTGCTCATA+TGG | 0.436680 | 1.1:+57627535 | MS.gene062226:CDS |
| CAAATGTTAGGCTTCCTTTG+TGG | 0.438325 | 1.1:+57627606 | MS.gene062226:CDS |
| ATAACAGCTTCTTCATTCTC+AGG | 0.444898 | 1.1:-57627989 | None:intergenic |
| AGTTTAGTTGGCTTTAGAGC+TGG | 0.453062 | 1.1:-57628911 | None:intergenic |
| TTTGTGACATTGAGGAAAGA+TGG | 0.456630 | 1.1:+57627386 | MS.gene062226:CDS |
| GTGAAGGCAATTGACACAAC+TGG | 0.456721 | 1.1:+57628573 | MS.gene062226:CDS |
| AAGAGACCCTTCTATATTTG+AGG | 0.456759 | 1.1:+57628638 | MS.gene062226:CDS |
| AGACACATCTGGTGTATCCT+TGG | 0.457720 | 1.1:+57626554 | MS.gene062226:CDS |
| TTCTGAGCCTCTTCAGCAGT+TGG | 0.458744 | 1.1:-57628880 | None:intergenic |
| TCCTTTGTGGCCTTCTGCTG+AGG | 0.474259 | 1.1:+57627619 | MS.gene062226:CDS |
| CACAAAGGAAGCCTAACATT+TGG | 0.475391 | 1.1:-57627605 | None:intergenic |
| AAGAAGAAGAACAAGATGTC+AGG | 0.478396 | 1.1:+57626477 | None:intergenic |
| AAGCTGCTTATTATTACTGA+TGG | 0.481688 | 1.1:+57628034 | MS.gene062226:CDS |
| ATTGAGGAAAGATGGAGAGA+GGG | 0.488808 | 1.1:+57627394 | MS.gene062226:CDS |
| ATTGGCAGGGGCACCGCCAG+GGG | 0.492610 | 1.1:-57626601 | None:intergenic |
| GGCCTTCTGCTGAGGCTGCT+AGG | 0.493211 | 1.1:+57627627 | MS.gene062226:CDS |
| TGCACTTCCAACTGCTGAAG+AGG | 0.495831 | 1.1:+57628873 | MS.gene062226:CDS |
| CATTGGCAGGGGCACCGCCA+GGG | 0.499364 | 1.1:-57626602 | None:intergenic |
| GATCCATTAGTGATATCATT+CGG | 0.499392 | 1.1:+57626507 | MS.gene062226:CDS |
| TCTTCAGCAGTTGGAAGTGC+AGG | 0.503583 | 1.1:-57628871 | None:intergenic |
| ATTAAGAACCTTGCCGATGA+AGG | 0.504091 | 1.1:-57626661 | None:intergenic |
| GACCTAGCAGCCTCAGCAGA+AGG | 0.506010 | 1.1:-57627629 | None:intergenic |
| AAGGATACACCAGATGTGTC+TGG | 0.508328 | 1.1:-57626552 | None:intergenic |
| TGTGCTGTGTCCAAACTTGG+TGG | 0.518945 | 1.1:+57626630 | MS.gene062226:CDS |
| ATTATTACTGATGGAGAGAA+GGG | 0.525619 | 1.1:+57628043 | MS.gene062226:CDS |
| AGCAGTTGGAAGTGCAGGAA+TGG | 0.528605 | 1.1:-57628866 | None:intergenic |
| TTGACATTTGCAAATGCTTG+TGG | 0.529294 | 1.1:+57628817 | MS.gene062226:CDS |
| TATTATTACTGATGGAGAGA+AGG | 0.530843 | 1.1:+57628042 | MS.gene062226:CDS |
| AATCAAAAGCATTTGGAATG+AGG | 0.534914 | 1.1:+57627655 | MS.gene062226:CDS |
| CATTGAGGAAAGATGGAGAG+AGG | 0.536347 | 1.1:+57627393 | MS.gene062226:CDS |
| GGTGGCAATGCTGCCTTCAT+CGG | 0.543040 | 1.1:+57626648 | MS.gene062226:CDS |
| CATTGGCATTTGTGACATTG+AGG | 0.546347 | 1.1:+57627378 | MS.gene062226:CDS |
| TTCAGTAACATATCAGCACT+AGG | 0.548072 | 1.1:-57627437 | None:intergenic |
| GCAATTGACACAACTGGTGC+TGG | 0.548770 | 1.1:+57628579 | MS.gene062226:CDS |
| TATGCTTTCATCAAAGCCCC+TGG | 0.549304 | 1.1:+57626585 | MS.gene062226:CDS |
| GAATGAGGCTGATTTCATCA+AGG | 0.550630 | 1.1:+57627670 | MS.gene062226:CDS |
| CAGCACAAGCCACATTGGCA+GGG | 0.565146 | 1.1:-57626614 | None:intergenic |
| AGCACAAGCCACATTGGCAG+GGG | 0.566309 | 1.1:-57626613 | None:intergenic |
| GCCTCAGCAGAAGGCCACAA+AGG | 0.575264 | 1.1:-57627620 | None:intergenic |
| CACACAGGCAAGAACTGCAT+TGG | 0.580273 | 1.1:+57627361 | MS.gene062226:CDS |
| TCAGTAACATATCAGCACTA+GGG | 0.589086 | 1.1:-57627436 | None:intergenic |
| AGCATACCTCAAATATAGAA+GGG | 0.591278 | 1.1:-57628644 | None:intergenic |
| GGACACAGCACAAGCCACAT+TGG | 0.596726 | 1.1:-57626619 | None:intergenic |
| GCCATATGAGCAGATCTGCA+TGG | 0.597134 | 1.1:-57627536 | None:intergenic |
| GCCATGAAAGCTGCTAGAGA+AGG | 0.601701 | 1.1:+57627560 | MS.gene062226:CDS |
| CAATGCTGCCTTCATCGGCA+AGG | 0.604108 | 1.1:+57626653 | MS.gene062226:CDS |
| TGGCGGTGCCCCTGCCAATG+TGG | 0.604697 | 1.1:+57626605 | MS.gene062226:CDS |
| AGCAATGTGTACAACACAGA+AGG | 0.614417 | 1.1:+57628840 | MS.gene062226:CDS |
| GGGTTGTAGATATGTCACTA+AGG | 0.615724 | 1.1:+57628063 | MS.gene062226:CDS |
| TAGGGGATGATGAATTTGGA+AGG | 0.622298 | 1.1:+57627282 | MS.gene062226:CDS |
| GAAAGAATCTGAATTGAACA+TGG | 0.634038 | 1.1:+57627457 | MS.gene062226:CDS |
| GCAATGTGTACAACACAGAA+GGG | 0.647308 | 1.1:+57628841 | MS.gene062226:CDS |
| GGTAAGTGGATTCTCAGTGA+AGG | 0.658481 | 1.1:+57628557 | MS.gene062226:CDS |
| TGGTGCACTTCTCAGAGATG+TGG | 0.663280 | 1.1:+57628614 | MS.gene062226:CDS |
| ATGAAAGCTGCTAGAGAAGG+TGG | 0.665141 | 1.1:+57627563 | MS.gene062226:CDS |
| GAAAGCATAAGATTCAGCCA+AGG | 0.678603 | 1.1:-57626571 | None:intergenic |
| GCTTTCATCAAAGCCCCTGG+CGG | 0.681461 | 1.1:+57626588 | MS.gene062226:CDS |
| AAGAAGCTGTTATGTCTCTG+TGG | 0.706539 | 1.1:+57627999 | MS.gene062226:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTAAAAATAATTCTCAT+TGG | + | chr1.1:57628732-57628751 | MS.gene062226:intron | 15.0% |
| !!! | AAAACATTTCTTTTGATTTT+TGG | + | chr1.1:57628111-57628130 | MS.gene062226:intron | 15.0% |
| !!! | AAAATGATCATTTTCTATAT+AGG | + | chr1.1:57627928-57627947 | MS.gene062226:intron | 15.0% |
| !!! | AAAGAAATGTTTTCAAAATA+TGG | - | chr1.1:57628104-57628123 | None:intergenic | 15.0% |
| !!! | AATGAGAATTATTTTTACAA+AGG | - | chr1.1:57628733-57628752 | None:intergenic | 15.0% |
| !!! | ATTTTTATCTATTCAGAAAT+AGG | + | chr1.1:57628236-57628255 | MS.gene062226:intron | 15.0% |
| !!! | TTTTTATCTATTCAGAAATA+GGG | + | chr1.1:57628237-57628256 | MS.gene062226:intron | 15.0% |
| !! | AATACAAAGATATTCCATTA+TGG | + | chr1.1:57627491-57627510 | MS.gene062226:CDS | 20.0% |
| !! | ATAAAAATAATCTTCGTGAA+TGG | - | chr1.1:57628224-57628243 | None:intergenic | 20.0% |
| !! | ATAAATTTCAATGACCATAT+TGG | - | chr1.1:57626915-57626934 | None:intergenic | 20.0% |
| !! | ATATGGTCATTGAAATTTAT+AGG | + | chr1.1:57626915-57626934 | MS.gene062226:intron | 20.0% |
| !! | GATAAACATAATAGTAAAGT+GGG | - | chr1.1:57626698-57626717 | None:intergenic | 20.0% |
| !! | TAAAAATAATCTTCGTGAAT+GGG | - | chr1.1:57628223-57628242 | None:intergenic | 20.0% |
| !! | TATGGAAGTTTATTAAATGA+TGG | + | chr1.1:57627723-57627742 | MS.gene062226:intron | 20.0% |
| !! | TTGAATTTGACATTTCTTTA+TGG | + | chr1.1:57627705-57627724 | MS.gene062226:intron | 20.0% |
| !! | TTTAGTTAATTGATCATTAG+TGG | + | chr1.1:57628155-57628174 | MS.gene062226:intron | 20.0% |
| !!! | TACAATTCTAGAAATCATTT+TGG | - | chr1.1:57626975-57626994 | None:intergenic | 20.0% |
| !!! | TCATTTGCATTTATTTTGTT+AGG | - | chr1.1:57627247-57627266 | None:intergenic | 20.0% |
| !!! | TTTTCAAAATATGGATTAGA+TGG | - | chr1.1:57628095-57628114 | None:intergenic | 20.0% |
| ! | AACATAAAATTAAGTCAAGC+TGG | - | chr1.1:57628421-57628440 | None:intergenic | 25.0% |
| ! | CGATAAACATAATAGTAAAG+TGG | - | chr1.1:57626699-57626718 | None:intergenic | 25.0% |
| ! | CTGACATATTGAAGAAAAAT+GGG | + | chr1.1:57627312-57627331 | MS.gene062226:CDS | 25.0% |
| ! | CTTTATTGAATTCAACATGA+AGG | + | chr1.1:57628771-57628790 | MS.gene062226:intron | 25.0% |
| ! | TGAAAAGAAAAATGACCATA+GGG | - | chr1.1:57627864-57627883 | None:intergenic | 25.0% |
| ! | TGACATATTGAAGAAAAATG+GGG | + | chr1.1:57627313-57627332 | MS.gene062226:CDS | 25.0% |
| ! | TTCTGAGTAAATATCCAATA+TGG | + | chr1.1:57626898-57626917 | MS.gene062226:intron | 25.0% |
| ! | TTGAAAAGAAAAATGACCAT+AGG | - | chr1.1:57627865-57627884 | None:intergenic | 25.0% |
| ! | TTGCAATTTCAAATATCAGA+TGG | + | chr1.1:57627187-57627206 | MS.gene062226:intron | 25.0% |
| !! | ATTTTTACACAGTCTTTCAA+CGG | - | chr1.1:57626817-57626836 | None:intergenic | 25.0% |
| !! | GTTTGAATGCAGAATTTTAA+AGG | + | chr1.1:57628531-57628550 | MS.gene062226:intron | 25.0% |
| !! | TGATATTTGAAATTGCAAGA+TGG | - | chr1.1:57627185-57627204 | None:intergenic | 25.0% |
| !!! | AATGCAGAATTTTAAAGGAA+GGG | + | chr1.1:57628536-57628555 | MS.gene062226:intron | 25.0% |
| !!! | GAAGTTAAGTTGATAATGTA+AGG | - | chr1.1:57627114-57627133 | None:intergenic | 25.0% |
| AACTTCACAACAAGTACTTA+TGG | + | chr1.1:57627807-57627826 | MS.gene062226:intron | 30.0% | |
| AAGCATACCTCAAATATAGA+AGG | - | chr1.1:57628648-57628667 | None:intergenic | 30.0% | |
| AAGCTGCTTATTATTACTGA+TGG | + | chr1.1:57628034-57628053 | MS.gene062226:CDS | 30.0% | |
| AATCAACTTGTAATTCCCTA+TGG | + | chr1.1:57627846-57627865 | MS.gene062226:intron | 30.0% | |
| AGCATACCTCAAATATAGAA+GGG | - | chr1.1:57628647-57628666 | None:intergenic | 30.0% | |
| ATTATTACTGATGGAGAGAA+GGG | + | chr1.1:57628043-57628062 | MS.gene062226:CDS | 30.0% | |
| GAAAATAGGATAGCAACTTA+TGG | - | chr1.1:57628360-57628379 | None:intergenic | 30.0% | |
| GAAAGAATCTGAATTGAACA+TGG | + | chr1.1:57627457-57627476 | MS.gene062226:CDS | 30.0% | |
| GATCCATTAGTGATATCATT+CGG | + | chr1.1:57626507-57626526 | MS.gene062226:CDS | 30.0% | |
| GCTGACATATTGAAGAAAAA+TGG | + | chr1.1:57627311-57627330 | MS.gene062226:CDS | 30.0% | |
| GGAAGTTTATTAAATGATGG+AGG | + | chr1.1:57627726-57627745 | MS.gene062226:intron | 30.0% | |
| GGAGGATATAACAGAAAAAA+AGG | + | chr1.1:57627744-57627763 | MS.gene062226:intron | 30.0% | |
| GTAAAAATTCACTGAGGTTA+TGG | + | chr1.1:57626829-57626848 | MS.gene062226:intron | 30.0% | |
| GTTTGATGTGGTATTATATG+AGG | + | chr1.1:57626851-57626870 | MS.gene062226:intron | 30.0% | |
| TAGTCTCCGTAAAATATCAA+TGG | + | chr1.1:57627142-57627161 | MS.gene062226:intron | 30.0% | |
| TATTATTACTGATGGAGAGA+AGG | + | chr1.1:57628042-57628061 | MS.gene062226:CDS | 30.0% | |
| TCAAACAATATTTCCAACGA+TGG | - | chr1.1:57628517-57628536 | None:intergenic | 30.0% | |
| TGATAACATATCACAACTGA+GGG | - | chr1.1:57627048-57627067 | None:intergenic | 30.0% | |
| ! | AGTTTTTGCATCTGTAAAAG+TGG | + | chr1.1:57627895-57627914 | MS.gene062226:intron | 30.0% |
| ! | TAAGACTAATGGATCCATAA+TGG | - | chr1.1:57627508-57627527 | None:intergenic | 30.0% |
| ! | TTGATAACATATCACAACTG+AGG | - | chr1.1:57627049-57627068 | None:intergenic | 30.0% |
| ! | TTTTTACACAGTCTTTCAAC+GGG | - | chr1.1:57626816-57626835 | None:intergenic | 30.0% |
| !! | AATCAAAAGCATTTGGAATG+AGG | + | chr1.1:57627655-57627674 | MS.gene062226:CDS | 30.0% |
| !! | AATTTTAAAGGAAGGGTAAG+TGG | + | chr1.1:57628543-57628562 | MS.gene062226:CDS | 30.0% |
| !! | GAATGCAGAATTTTAAAGGA+AGG | + | chr1.1:57628535-57628554 | MS.gene062226:intron | 30.0% |
| AAGAGACCCTTCTATATTTG+AGG | + | chr1.1:57628638-57628657 | MS.gene062226:CDS | 35.0% | |
| AAGCCTAACATTTGGATCAT+AGG | - | chr1.1:57627600-57627619 | None:intergenic | 35.0% | |
| ATAACAGCTTCTTCATTCTC+AGG | - | chr1.1:57627992-57628011 | None:intergenic | 35.0% | |
| CATGGAGAGCTTAAGAAAAT+AGG | - | chr1.1:57628374-57628393 | None:intergenic | 35.0% | |
| CTAAACTATTCATCCATCGT+TGG | + | chr1.1:57628501-57628520 | MS.gene062226:intron | 35.0% | |
| GACTGTGTAAAAATTCACTG+AGG | + | chr1.1:57626823-57626842 | MS.gene062226:intron | 35.0% | |
| TCAGTAACATATCAGCACTA+GGG | - | chr1.1:57627439-57627458 | None:intergenic | 35.0% | |
| TGTCCTATGATCCAAATGTT+AGG | + | chr1.1:57627594-57627613 | MS.gene062226:CDS | 35.0% | |
| TTCAGTAACATATCAGCACT+AGG | - | chr1.1:57627440-57627459 | None:intergenic | 35.0% | |
| TTGACATTTGCAAATGCTTG+TGG | + | chr1.1:57628817-57628836 | MS.gene062226:CDS | 35.0% | |
| TTTGAGCTTATCTACGACTT+CGG | + | chr1.1:57628278-57628297 | MS.gene062226:intron | 35.0% | |
| TTTGTGACATTGAGGAAAGA+TGG | + | chr1.1:57627386-57627405 | MS.gene062226:CDS | 35.0% | |
| ! | ACTGTTTTCATAAGCTACCA+TGG | - | chr1.1:57628392-57628411 | None:intergenic | 35.0% |
| ! | CTATTTTCTTAAGCTCTCCA+TGG | + | chr1.1:57628372-57628391 | MS.gene062226:intron | 35.0% |
| ! | GTATTTTTCTGTCACTAGAG+TGG | - | chr1.1:57628695-57628714 | None:intergenic | 35.0% |
| ! | GTCAAAGTCTCTCTCAATTT+TGG | - | chr1.1:57628802-57628821 | None:intergenic | 35.0% |
| ! | GTCGAGCCATTGATATTTTA+CGG | - | chr1.1:57627151-57627170 | None:intergenic | 35.0% |
| ! | TGTCTGAAACAGTCTTACAA+GGG | - | chr1.1:57628311-57628330 | None:intergenic | 35.0% |
| ! | TGTTGTGAAGTTTTCCAAAC+TGG | - | chr1.1:57627799-57627818 | None:intergenic | 35.0% |
| ! | TTGTCTGAAACAGTCTTACA+AGG | - | chr1.1:57628312-57628331 | None:intergenic | 35.0% |
| ! | TTTTACACAGTCTTTCAACG+GGG | - | chr1.1:57626815-57626834 | None:intergenic | 35.0% |
| !! | TGGCTCTGAAATAAGACTAA+TGG | - | chr1.1:57627519-57627538 | None:intergenic | 35.0% |
| AAAAATGGGGTGAGTACAGA+CGG | + | chr1.1:57627326-57627345 | MS.gene062226:CDS | 40.0% | |
| AAGAAGCTGTTATGTCTCTG+TGG | + | chr1.1:57627999-57628018 | MS.gene062226:CDS | 40.0% | |
| ACTGAGGTTATGGTTTGATG+TGG | + | chr1.1:57626839-57626858 | MS.gene062226:intron | 40.0% | |
| AGCAATGTGTACAACACAGA+AGG | + | chr1.1:57628840-57628859 | MS.gene062226:CDS | 40.0% | |
| ATGATTGCAATGTGACAGGT+AGG | + | chr1.1:57627263-57627282 | MS.gene062226:intron | 40.0% | |
| ATTAAGAACCTTGCCGATGA+AGG | - | chr1.1:57626664-57626683 | None:intergenic | 40.0% | |
| ATTGAGGAAAGATGGAGAGA+GGG | + | chr1.1:57627394-57627413 | MS.gene062226:CDS | 40.0% | |
| CAAATGTTAGGCTTCCTTTG+TGG | + | chr1.1:57627606-57627625 | MS.gene062226:CDS | 40.0% | |
| CACAAAGGAAGCCTAACATT+TGG | - | chr1.1:57627608-57627627 | None:intergenic | 40.0% | |
| CATTGGCATTTGTGACATTG+AGG | + | chr1.1:57627378-57627397 | MS.gene062226:CDS | 40.0% | |
| GCAAATGATTGCAATGTGAC+AGG | + | chr1.1:57627259-57627278 | MS.gene062226:intron | 40.0% | |
| GCAATGTGTACAACACAGAA+GGG | + | chr1.1:57628841-57628860 | MS.gene062226:CDS | 40.0% | |
| GGGTTGTAGATATGTCACTA+AGG | + | chr1.1:57628063-57628082 | MS.gene062226:CDS | 40.0% | |
| TAAATCGCAGCTGTAACAAG+CGG | - | chr1.1:57626774-57626793 | None:intergenic | 40.0% | |
| TAGGGGATGATGAATTTGGA+AGG | + | chr1.1:57627282-57627301 | MS.gene062226:CDS | 40.0% | |
| TCGCCGAATGATATCACTAA+TGG | - | chr1.1:57626513-57626532 | None:intergenic | 40.0% | |
| TGATTGCAATGTGACAGGTA+GGG | + | chr1.1:57627264-57627283 | MS.gene062226:intron | 40.0% | |
| ! | GAAAGCATAAGATTCAGCCA+AGG | - | chr1.1:57626574-57626593 | None:intergenic | 40.0% |
| ! | GAATGAGGCTGATTTCATCA+AGG | + | chr1.1:57627670-57627689 | MS.gene062226:CDS | 40.0% |
| ! | GATTTTGTTCCAGACACATC+TGG | + | chr1.1:57626543-57626562 | MS.gene062226:CDS | 40.0% |
| !! | AACAAGTTCTAGAGCCAGTT+TGG | + | chr1.1:57627782-57627801 | MS.gene062226:intron | 40.0% |
| !! | GGTCTGGAATCAAAAGCATT+TGG | + | chr1.1:57627648-57627667 | MS.gene062226:CDS | 40.0% |
| AAGGATACACCAGATGTGTC+TGG | - | chr1.1:57626555-57626574 | None:intergenic | 45.0% | |
| ACCTTCTCTAGCAGCTTTCA+TGG | - | chr1.1:57627564-57627583 | None:intergenic | 45.0% | |
| AGACACATCTGGTGTATCCT+TGG | + | chr1.1:57626554-57626573 | MS.gene062226:CDS | 45.0% | |
| ATGAAAGCTGCTAGAGAAGG+TGG | + | chr1.1:57627563-57627582 | MS.gene062226:CDS | 45.0% | |
| CAGGTAGGGGATGATGAATT+TGG | + | chr1.1:57627278-57627297 | MS.gene062226:intron | 45.0% | |
| CATTGAGGAAAGATGGAGAG+AGG | + | chr1.1:57627393-57627412 | MS.gene062226:CDS | 45.0% | |
| GATTGCAATGTGACAGGTAG+GGG | + | chr1.1:57627265-57627284 | MS.gene062226:intron | 45.0% | |
| GTGAAGGCAATTGACACAAC+TGG | + | chr1.1:57628573-57628592 | MS.gene062226:CDS | 45.0% | |
| TATGCTTTCATCAAAGCCCC+TGG | + | chr1.1:57626585-57626604 | MS.gene062226:CDS | 45.0% | |
| ! | GCTTGTTACAGCTGCGATTT+AGG | + | chr1.1:57626773-57626792 | MS.gene062226:intron | 45.0% |
| ! | GGTAAGTGGATTCTCAGTGA+AGG | + | chr1.1:57628557-57628576 | MS.gene062226:CDS | 45.0% |
| !!! | CGGTGTTTGTTTTGACACAC+AGG | + | chr1.1:57627346-57627365 | MS.gene062226:CDS | 45.0% |
| !!! | GGTGCTGGTGATTCTTTTGT+TGG | + | chr1.1:57628594-57628613 | MS.gene062226:CDS | 45.0% |
| CACACAGGCAAGAACTGCAT+TGG | + | chr1.1:57627361-57627380 | MS.gene062226:CDS | 50.0% | |
| GCAATTGACACAACTGGTGC+TGG | + | chr1.1:57628579-57628598 | MS.gene062226:CDS | 50.0% | |
| GCCATATGAGCAGATCTGCA+TGG | - | chr1.1:57627539-57627558 | None:intergenic | 50.0% | |
| GCCATGAAAGCTGCTAGAGA+AGG | + | chr1.1:57627560-57627579 | MS.gene062226:CDS | 50.0% | |
| GCCATGCAGATCTGCTCATA+TGG | + | chr1.1:57627535-57627554 | MS.gene062226:CDS | 50.0% | |
| GCTTGTGCTGTGTCCAAACT+TGG | + | chr1.1:57626627-57626646 | MS.gene062226:CDS | 50.0% | |
| GTCTTTCAACGGGGAAACTC+TGG | - | chr1.1:57626806-57626825 | None:intergenic | 50.0% | |
| TGCACTTCCAACTGCTGAAG+AGG | + | chr1.1:57628873-57628892 | MS.gene062226:CDS | 50.0% | |
| TGGTGCACTTCTCAGAGATG+TGG | + | chr1.1:57628614-57628633 | MS.gene062226:CDS | 50.0% | |
| TGTGCTGTGTCCAAACTTGG+TGG | + | chr1.1:57626630-57626649 | MS.gene062226:CDS | 50.0% | |
| TTCTGAGCCTCTTCAGCAGT+TGG | - | chr1.1:57628883-57628902 | None:intergenic | 50.0% | |
| ! | AGCAGTTGGAAGTGCAGGAA+TGG | - | chr1.1:57628869-57628888 | None:intergenic | 50.0% |
| ! | TCTTCAGCAGTTGGAAGTGC+AGG | - | chr1.1:57628874-57628893 | None:intergenic | 50.0% |
| ACAGCACAAGCCACATTGGC+AGG | - | chr1.1:57626618-57626637 | None:intergenic | 55.0% | |
| AGCACAAGCCACATTGGCAG+GGG | - | chr1.1:57626616-57626635 | None:intergenic | 55.0% | |
| CAATGCTGCCTTCATCGGCA+AGG | + | chr1.1:57626653-57626672 | MS.gene062226:CDS | 55.0% | |
| CAGCACAAGCCACATTGGCA+GGG | - | chr1.1:57626617-57626636 | None:intergenic | 55.0% | |
| GCTTTCATCAAAGCCCCTGG+CGG | + | chr1.1:57626588-57626607 | MS.gene062226:CDS | 55.0% | |
| GGACACAGCACAAGCCACAT+TGG | - | chr1.1:57626622-57626641 | None:intergenic | 55.0% | |
| GGCAGCATTGCCACCAAGTT+TGG | - | chr1.1:57626643-57626662 | None:intergenic | 55.0% | |
| GGTGGCAATGCTGCCTTCAT+CGG | + | chr1.1:57626648-57626667 | MS.gene062226:CDS | 55.0% | |
| TCCTTTGTGGCCTTCTGCTG+AGG | + | chr1.1:57627619-57627638 | MS.gene062226:CDS | 55.0% | |
| TCGCAGCTGTAACAAGCGGA+AGG | - | chr1.1:57626770-57626789 | None:intergenic | 55.0% | |
| GACCTAGCAGCCTCAGCAGA+AGG | - | chr1.1:57627632-57627651 | None:intergenic | 60.0% | |
| GCCTCAGCAGAAGGCCACAA+AGG | - | chr1.1:57627623-57627642 | None:intergenic | 60.0% | |
| TCTGCTGAGGCTGCTAGGTC+TGG | + | chr1.1:57627632-57627651 | MS.gene062226:CDS | 60.0% | |
| GGCCTTCTGCTGAGGCTGCT+AGG | + | chr1.1:57627627-57627646 | MS.gene062226:CDS | 65.0% | |
| TGGCGGTGCCCCTGCCAATG+TGG | + | chr1.1:57626605-57626624 | MS.gene062226:CDS | 70.0% | |
| !! | ACATTGGCAGGGGCACCGCC+AGG | - | chr1.1:57626606-57626625 | None:intergenic | 70.0% |
| !! | ATTGGCAGGGGCACCGCCAG+GGG | - | chr1.1:57626604-57626623 | None:intergenic | 70.0% |
| !! | CATTGGCAGGGGCACCGCCA+GGG | - | chr1.1:57626605-57626624 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 57626492 | 57628930 | 57626492 | ID=MS.gene062226 |
| chr1.1 | mRNA | 57626492 | 57628930 | 57626492 | ID=MS.gene062226.t1;Parent=MS.gene062226 |
| chr1.1 | exon | 57626492 | 57626674 | 57626492 | ID=MS.gene062226.t1.exon1;Parent=MS.gene062226.t1 |
| chr1.1 | CDS | 57626492 | 57626674 | 57626492 | ID=cds.MS.gene062226.t1;Parent=MS.gene062226.t1 |
| chr1.1 | exon | 57627281 | 57627691 | 57627281 | ID=MS.gene062226.t1.exon2;Parent=MS.gene062226.t1 |
| chr1.1 | CDS | 57627281 | 57627691 | 57627281 | ID=cds.MS.gene062226.t1;Parent=MS.gene062226.t1 |
| chr1.1 | exon | 57627950 | 57628084 | 57627950 | ID=MS.gene062226.t1.exon3;Parent=MS.gene062226.t1 |
| chr1.1 | CDS | 57627950 | 57628084 | 57627950 | ID=cds.MS.gene062226.t1;Parent=MS.gene062226.t1 |
| chr1.1 | exon | 57628543 | 57628659 | 57628543 | ID=MS.gene062226.t1.exon4;Parent=MS.gene062226.t1 |
| chr1.1 | CDS | 57628543 | 57628659 | 57628543 | ID=cds.MS.gene062226.t1;Parent=MS.gene062226.t1 |
| chr1.1 | exon | 57628793 | 57628930 | 57628793 | ID=MS.gene062226.t1.exon5;Parent=MS.gene062226.t1 |
| chr1.1 | CDS | 57628793 | 57628930 | 57628793 | ID=cds.MS.gene062226.t1;Parent=MS.gene062226.t1 |
| Gene Sequence |
| Protein sequence |
