AlfalfaGEDB | MS.gene45533

M. sativa cultivar XinJiangDaYe / MS.gene45533

KEGG: -
GO: -
PFAM: PF00226.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45533.t1	AES67650.2	90.8	229	11	3	9	237	54	272	2.00E-104	388.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45533.t1	Q5WHG0	51.9	77	32	1	37	108	7	83	4.1e-13	76.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45533.t1	G7IRX6	90.8	229	11	3	9	237	54	272	1.4e-104	388.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene45533	0.821219	4.54E-53	-1.69E-46
MS.gene049151	MS.gene45533	0.824286	8.76E-54	-1.69E-46
MS.gene049153	MS.gene45533	0.82503	5.85E-54	-1.69E-46
MS.gene049170	MS.gene45533	0.826586	2.50E-54	-1.69E-46
MS.gene049230	MS.gene45533	0.874062	9.06E-68	-1.69E-46
MS.gene049297	MS.gene45533	0.810215	1.29E-50	-1.69E-46
MS.gene04933	MS.gene45533	0.810884	9.23E-51	-1.69E-46
MS.gene049346	MS.gene45533	0.807867	4.10E-50	-1.69E-46
MS.gene049378	MS.gene45533	0.91303	9.87E-84	-1.69E-46
MS.gene049443	MS.gene45533	0.804157	2.47E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45533.t1	MTR_2g097690	90.830	229	11	3	9	237	54	272	2.84e-147	412
MS.gene45533.t1	MTR_2g097690	89.147	129	9	2	9	137	54	177	2.73e-78	234
MS.gene45533.t1	MTR_7g085600	47.126	87	45	1	33	118	52	138	2.05e-15	74.3
MS.gene45533.t1	MTR_7g069480	54.098	61	28	0	36	96	28	88	1.50e-13	69.7
MS.gene45533.t1	MTR_1g110310	55.556	63	27	1	36	97	17	79	3.08e-13	68.6
MS.gene45533.t1	MTR_3g087030	50.000	72	34	1	25	96	74	143	8.72e-13	67.4
MS.gene45533.t1	MTR_2g436560	45.070	71	38	1	27	96	95	165	1.37e-12	66.6
MS.gene45533.t1	MTR_5g035770	44.944	89	43	3	36	123	26	109	1.83e-12	66.2
MS.gene45533.t1	MTR_2g436580	36.957	92	57	1	6	96	80	171	6.24e-12	63.5
MS.gene45533.t1	MTR_2g104030	51.667	60	29	0	37	96	72	131	1.07e-11	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45533.t1	AT5G59610	68.326	221	62	5	21	237	62	278	1.98e-96	283
MS.gene45533.t1	AT5G59610	68.326	221	62	5	21	237	62	278	1.98e-96	283
MS.gene45533.t1	AT5G59610	64.706	221	59	6	21	237	62	267	9.70e-86	256
MS.gene45533.t1	AT5G59610	64.706	221	59	6	21	237	62	267	9.70e-86	256
MS.gene45533.t1	AT5G59610	50.562	178	82	4	21	196	62	235	3.12e-46	154
MS.gene45533.t1	AT5G18140	34.146	123	67	3	8	117	42	163	6.71e-14	70.1
MS.gene45533.t1	AT1G80030	51.899	79	35	2	20	96	59	136	4.61e-13	68.2
MS.gene45533.t1	AT1G80030	51.899	79	35	2	20	96	59	136	4.77e-13	68.2
MS.gene45533.t1	AT1G80030	51.899	79	35	2	20	96	59	136	4.77e-13	68.2
MS.gene45533.t1	AT1G80030	51.899	79	35	2	20	96	59	136	4.77e-13	68.2

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Find 45 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCGAAGAGCCTATGGG+AGG	0.695988	2.1:-6411591	MS.gene45533:CDS
AAATAGAAGCCACTCTAGCT+CGG	0.585461	2.1:-6411072	MS.gene45533:CDS
AACTCCTCCCATAGGCTCTT+CGG	0.475580	2.1:+6411587	None:intergenic
AAGGAAAGCCGAAGAGCCTA+TGG	0.442336	2.1:-6411595	MS.gene45533:CDS
AAGTATGATTCTGAAAATCG+TGG	0.629512	2.1:-6413560	MS.gene45533:CDS
ACACCAAGCAACAGCACTCA+AGG	0.557671	2.1:-6411139	MS.gene45533:CDS
ACTCAAGGTGAAGCTAGCAA+GGG	0.673091	2.1:-6411124	MS.gene45533:CDS
AGAAAGCAGCATGAGAACAA+AGG	0.590712	2.1:-6415303	MS.gene45533:CDS
AGAGATGTTCAAATAACAAT+AGG	0.374423	2.1:-6411882	MS.gene45533:intron
AGGAAAGCCGAAGAGCCTAT+GGG	0.632474	2.1:-6411594	MS.gene45533:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGAGATGAAATACAAGG+AGG	-	chr2.1:6413929-6413948	MS.gene45533:intron	30.0%
AACAATGTGCTTTACTAACA+AGG	+	chr2.1:6412115-6412134	None:intergenic	30.0%
AACATAGGAAAATCCAAGAT+TGG	+	chr2.1:6412290-6412309	None:intergenic	30.0%
AACCGGCATATATTATTAGT+AGG	-	chr2.1:6413071-6413090	MS.gene45533:intron	30.0%
AATCTCTAACAACAACCAAA+TGG	-	chr2.1:6414099-6414118	MS.gene45533:intron	30.0%
AATTACAGCCTTAGGATAAT+AGG	-	chr2.1:6413005-6413024	MS.gene45533:intron	30.0%
AATTGTTAAGAGTCCAACAT+CGG	-	chr2.1:6411785-6411804	MS.gene45533:intron	30.0%
AGGATTAGGGAAAAAGAAAA+AGG	-	chr2.1:6413025-6413044	MS.gene45533:intron	30.0%
AGTTTATTACGCATGACTTA+AGG	+	chr2.1:6413634-6413653	None:intergenic	30.0%
ATCATATTTCAGTCATGCTT+CGG	+	chr2.1:6413695-6413714	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	6411048	6415349	6411048	ID=MS.gene45533
chr2.1	mRNA	6411048	6415349	6411048	ID=MS.gene45533.t1;Parent=MS.gene45533
chr2.1	exon	6415143	6415349	6415143	ID=MS.gene45533.t1.exon1;Parent=MS.gene45533.t1
chr2.1	CDS	6415143	6415349	6415143	ID=cds.MS.gene45533.t1;Parent=MS.gene45533.t1
chr2.1	exon	6413495	6413654	6413495	ID=MS.gene45533.t1.exon2;Parent=MS.gene45533.t1
chr2.1	CDS	6413495	6413654	6413495	ID=cds.MS.gene45533.t1;Parent=MS.gene45533.t1
chr2.1	exon	6411883	6411915	6411883	ID=MS.gene45533.t1.exon3;Parent=MS.gene45533.t1
chr2.1	CDS	6411883	6411915	6411883	ID=cds.MS.gene45533.t1;Parent=MS.gene45533.t1
chr2.1	exon	6411583	6411677	6411583	ID=MS.gene45533.t1.exon4;Parent=MS.gene45533.t1
chr2.1	CDS	6411583	6411677	6411583	ID=cds.MS.gene45533.t1;Parent=MS.gene45533.t1
chr2.1	exon	6411048	6411266	6411048	ID=MS.gene45533.t1.exon5;Parent=MS.gene45533.t1
chr2.1	CDS	6411048	6411266	6411048	ID=cds.MS.gene45533.t1;Parent=MS.gene45533.t1

Gene Sequence

>MS.gene45533

ATGCCTAGTTTCAGAATCAGATATAGAAAGCAGCATGAGAACAAAGGAAGAGGTGGCTATAGAAATAGAATAAGGGTAGTTGTAAGAGCAAGGCGTGGTGAGTCTCCATATGAAGTTCTTGGTTTGTCTCCATCTGCATCTGTGAATGAAATCAAAAAGGCTTATAGGAAACTTGCTCTTAAGTATCATCCTGATGTTAATAAAGAGGTAATTGCTATGTTCAACACTTTTATGGATTCTCACTTAGTAGTTTATTATTATGTGGAAGTTTTTGTATAGGTTTGGAAATTTTATGTTTCATGATTGTTGTTGATAACTTATTGAAAGCTAAATGCAAAACCAATTCTTTGTTGTGTTCTATGTGCACTATTGTTTGTGATTTAGGGGTGATTTTGATAATAGAGCATTTATCCATTATTATGATATTATTAGCAGTTTTGAATGATATGTGGTTGCAATGTTGATGCTAGCTAGCTTTTGTTTGAAGATAAAAGATTTCATGGTTGCAAACTTTATTGGTTTTCGTTGTTGTAGCCAAATTGTGCTGTGAATATTGACTGGTCTACAGAAAATGTTAAATAGTGGCGCTATTGCATAGCATAAATTGAAGAAATCGCTATTTAGTACAATATATTGTGAAATAACAACTATAGTGGGCCTTTATCGTGTACCGGAATTTGAACAGCCCGCTATTTTCCACAATCCGCAGTTGACAACACTGATTGTGTTATGTCTATAATTGTTAAGAGTCCAACATCGGATAAGTGATGGTCTGACAATGTGTTTATAAGTGGGGGAAATCTTCAATTCACAAACCGATTTTGTGGGGTTGTGTTAGGCCCAACCACGATTTCTAAGAATAATGGAAAGATAAACTTACAATTGCAGCATGTCAGAATGCTCTCTACTGAGTGTTCTGCGTTGCTGTCCACTTTCACATTGTCACAAGGTTTGTCATGGCTGTTTTGCTTTCAAAATTCATATATTTGAGTTTTGACAAAATTTTCATAAATGACTTACTGCTCTAGAACCATCTTAAATGTGTGGCCTGACTTTTTAAGTCTCCTTGTTAGTAAAGCACATTGTTCTTTCATTTATTTTATGCTCCAATAAGTTGGAAAAAGTTTCGGATCTACCATGATTATAGTATGAATGTCATATCAGAAAATAACAACGTGAGAAGACTGGGAACAACTTATGACCTGCATGTATGTACACTTGTAGTTTGTTTATCATCTTCCAATCTTGGATTTTCCTATGTTGTTTTATTTTTCTAAAGGAAATCCCGGGTCAGCACTAAAATGACGGTGATAACTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCGCTGATGGACAAACAAAAATTGAAGAAAAAATGTGAAATTGATCACCATCGTGATAACTGGCTTTCAATCATGAGTATGGATTTTAGAAAAACAAGGATAAAGGAAGTAGCAAAAGTGTATTCTATATGTTATGCAGAAATCTAATGTTATAATGATGTAGTCATATAACGGCTCTATTTTGGATTGTGATCTCCGTGCCAAAAGATTGTATCTGACAATTAATGTATTGATAGTTAACTATCATAAGATACAAATACGTTGTGTGCGTATTTATGTATTTTAAAGTGTATTCTGACAGGACAATGCACAGGAGAAATTTTTGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGTTCCCGCAGAAAGTATGATTCTGAAAATCGTGGTTTTAATTCTTCTCAAAGAAGCCAGAGTTGGAATCAACAAGTTGAAGAAGAATTTTATGGATTAGGTAAAGATTTATACTTATTTGCAGTCTTGTTTGGAGATCTATCTGCAAAATTTAACTTTGAGTACATTTTAAATTTTGCTATTGCTTATACAGCCGTTACAGAATTACAGCCTTAGGATAATAGGATTAGGGAAAAAGAAAAAGGCAGAAAGGTGGTGCAAAGTGATAAACCGGCATATATTATTAGTAGGATGTAATGGTGTCTAATACTCTTTTCTATGTTAATTTGGTCTAATACTAACAATACTAGTAAATCCCAAGCCAACTAATGATATAGCCATAATAAATCCATTAAGATATTTTTATCACTCAACCTTAAACTGAAGTTTACTATTACAAGTAACAAACTCGCAGATATAAGAAAAAAGAATGTAATCTCATCTAGCCAAATAACTTAGGCAACTAGCACTCCACGCCCCTCAAATCACAAAACCTTCAATTCTGAACATAACTCGCCGACCTCCATCAGAAACTTAAGATGATAGAACCAAACAAGCAGACAGAAGAGAAGAAACTGCAACCCATTTTTACAGGAAACTATTGCCAAGAGAAACTTAGCACATTAGCAAATCCTGAACCATTCAAACACAGGAAGGAGAGACACATATCTGGTCCATCCCCAAATACTCAAGAAAAGTATCAAACACTGGAAAGTTCCTGCTCCAAACTTGTGATGATCACTCACCTGTCTGAGAGGTCAGACGGAATTGTAGTGATGGTTCCCTGAACCTTAAGTCATGCGTAATAAACTGAAATGTAGTAGTATTTGTCTTTTGGATTAAAAGAGGGCCGAAGCATGACTGAAATATGATATTGATAACCTTAAGTACTAGTACTATTAGTACAAGACCTAGCGACAAGAACAATTACCTAAACAAATCCACAAAGATATTCTAAGGTAATATAGATAAAGGATAATCTGGTGCTGTTAAGCTTCCATCTTAACAAGATCTAGGAAACGATTGGACCCATTACTGATCTATTTTTTTTTTTTTAAACAAACAAACTTAACTCCTTTCATTAATCAAAAGAGATGAAATACAAGGAGGAACAAAATCAAAGACTCGGCGACCAACATAGGAAATGGCCGCTATAGCTAGATTATGAGCTACCATATTCGCATGCCTCTGAATAAACTTAACCTCAAAGTTACAAATCTATTTTATGCAGCCTTACACTGCATTTTGCTAGGGGCTAATCTCTAACAACAACCAAATGGTTTTCAGCGAGGTATACAGCTCGGAAAAGTTTTCAGTCAGCAGACCATTCATGTATTTGGTGCAGTTAAAAACTGTCAGGCTGCATATTAAATTTTGATTTTGTTTTGGTTTATTGTGTGGATTTAATTTAACGAAGATGGTACGGATGCTAGTTATTTGATTTACCTCAATCACCCTCTATTTATGTTCTCCTTTAGTCCTTGAACTCTCTTCTAATACTAATTATTTACTTTTAACTGTCTGAGATATTTTTTTTTAAAACTCATCACATGCTTCCTGTCCTGCCATTTGATCAAATTAGTAACTTCTTTTTCAAAAGAAATTAAAAAAAATCTTATGTCAACATCTTGCTGCTGCAGGTAATTTTTTGAGAGATGTTCAAATAACAATAGGTAGCTATATACTCTCTGGTAGACAACATGTGATCAAGCCAGCCATGAGTTTAGCCTGCATTTCATTACAAATTTTACTGGTCAATGATTGATTGTGTCCCATATAAATCTATCAACCGGGACAAAGGGATGTCACTAGTGTTACAACTTAGTTTTATATTTCATTTCATGTGGTGTTTGAGATCTGATGATTTTGTTATTACAGGAGACTTCTTTAAGGATCTTCAAGAAGAGTTCAAGAACTGGGAAGCTAGTGCGGCTGCACAAGGAAAGCCGAAGAGCCTATGGGAGGAGTTGTCGGTGAGACCTCCCGCTAACATTTTTATTTGTGTGTTGGAGTTCAGTTAAGGATTCAATTATATACACTGGCAGTATGAAGATTTTTTACATTGTCAATCAATCGTGATCATCGGATCATTAAAAACATTTGACTTCAATCCTATTTGTTTTTAAAATCACATATAATATTGATAGTGATTTGTTGATAGTGTAAAACTTTTTAAATTGACAGTGGATCAAAATTAATCTCAATAAATCTTAGATGACCAAGAAAAGCCTTCAGTATGCAACAAGGACCTACACGTGGACTCATCATTTTTGAAATTTTAACTTTCAGGAAATAGGCGAAGAATTTGTGGAGTTCCTCGAGAAAGAACTCAATATTGTTGATTCAAATGAAAGTCCTCAGGGAGGAAATTCATCTAATTTATATGAGACAGAGACACCAAGCAACAGCACTCAAGGTGAAGCTAGCAAGGGAAACACAAGCGTTGAGGATAACCTTGATGAAATAGAAGCCACTCTAGCTCGGTTAAAAAAGGAGTTAGGCTTATAG

Protein sequence

>MS.gene45533.t1

MPSFRIRYRKQHENKGRGGYRNRIRVVVRARRGESPYEVLGLSPSASVNEIKKAYRKLALKYHPDVNKEDNAQEKFLRIKHAYNTLLNSSSRRKYDSENRGFNSSQRSQSWNQQVEEEFYGLGNFLRDVQITIGDFFKDLQEEFKNWEASAAAQGKPKSLWEELSEIGEEFVEFLEKELNIVDSNESPQGGNSSNLYETETPSNSTQGEASKGNTSVEDNLDEIEATLARLKKELGL