Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45170.t1 | XP_003613437.2 | 98.6 | 628 | 9 | 0 | 1 | 628 | 528 | 1155 | 0.00E+00 | 1169.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45170.t1 | B9DFG3 | 67.2 | 635 | 201 | 3 | 1 | 628 | 537 | 1171 | 7.2e-235 | 814.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45170.t1 | G7K5N2 | 98.6 | 628 | 9 | 0 | 1 | 628 | 528 | 1155 | 0.0e+00 | 1169.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene45170 | 0.857 | 2.20E-62 | -1.69E-46 |
| MS.gene049150 | MS.gene45170 | 0.869561 | 2.82E-66 | -1.69E-46 |
| MS.gene049151 | MS.gene45170 | 0.8655 | 5.64E-65 | -1.69E-46 |
| MS.gene049153 | MS.gene45170 | 0.871125 | 8.67E-67 | -1.69E-46 |
| MS.gene049230 | MS.gene45170 | 0.839801 | 1.28E-57 | -1.69E-46 |
| MS.gene049260 | MS.gene45170 | 0.836609 | 8.46E-57 | -1.69E-46 |
| MS.gene049378 | MS.gene45170 | 0.845398 | 4.16E-59 | -1.69E-46 |
| MS.gene049443 | MS.gene45170 | 0.81617 | 6.35E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene45170 | 0.850782 | 1.36E-60 | -1.69E-46 |
| MS.gene049910 | MS.gene45170 | 0.854752 | 9.98E-62 | -1.69E-46 |
| MS.gene049915 | MS.gene45170 | 0.830043 | 3.67E-55 | -1.69E-46 |
| MS.gene050128 | MS.gene45170 | 0.827362 | 1.63E-54 | -1.69E-46 |
| MS.gene050168 | MS.gene45170 | 0.844271 | 8.38E-59 | -1.69E-46 |
| MS.gene050226 | MS.gene45170 | 0.865571 | 5.36E-65 | -1.69E-46 |
| MS.gene050227 | MS.gene45170 | 0.861308 | 1.12E-63 | -1.69E-46 |
| MS.gene050228 | MS.gene45170 | 0.861871 | 7.56E-64 | -1.69E-46 |
| MS.gene050301 | MS.gene45170 | 0.842516 | 2.47E-58 | -1.69E-46 |
| MS.gene050330 | MS.gene45170 | -0.819779 | 9.71E-53 | -1.69E-46 |
| MS.gene050426 | MS.gene45170 | -0.832734 | 7.98E-56 | -1.69E-46 |
| MS.gene050464 | MS.gene45170 | 0.811804 | 5.83E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene45170 | 0.81618 | 6.32E-52 | -1.69E-46 |
| MS.gene050558 | MS.gene45170 | 0.818397 | 2.00E-52 | -1.69E-46 |
| MS.gene050605 | MS.gene45170 | 0.804233 | 2.38E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene45170 | -0.852621 | 4.09E-61 | -1.69E-46 |
| MS.gene050642 | MS.gene45170 | 0.892658 | 1.30E-74 | -1.69E-46 |
| MS.gene050680 | MS.gene45170 | 0.815752 | 7.87E-52 | -1.69E-46 |
| MS.gene050820 | MS.gene45170 | 0.836648 | 8.27E-57 | -1.69E-46 |
| MS.gene050900 | MS.gene45170 | 0.803914 | 2.78E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene45170 | -0.813973 | 1.95E-51 | -1.69E-46 |
| MS.gene051535 | MS.gene45170 | 0.822296 | 2.56E-53 | -1.69E-46 |
| MS.gene051663 | MS.gene45170 | 0.809443 | 1.89E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene45170 | 0.866407 | 2.92E-65 | -1.69E-46 |
| MS.gene051983 | MS.gene45170 | 0.905852 | 2.77E-80 | -1.69E-46 |
| MS.gene052011 | MS.gene45170 | -0.826986 | 2.01E-54 | -1.69E-46 |
| MS.gene052077 | MS.gene45170 | 0.857039 | 2.14E-62 | -1.69E-46 |
| MS.gene052178 | MS.gene45170 | 0.809318 | 2.01E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene45170 | 0.849408 | 3.30E-60 | -1.69E-46 |
| MS.gene052253 | MS.gene45170 | 0.811909 | 5.53E-51 | -1.69E-46 |
| MS.gene052255 | MS.gene45170 | 0.815078 | 1.11E-51 | -1.69E-46 |
| MS.gene052309 | MS.gene45170 | -0.820117 | 8.13E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene45170 | 0.843507 | 1.34E-58 | -1.69E-46 |
| MS.gene052426 | MS.gene45170 | 0.826995 | 2.00E-54 | -1.69E-46 |
| MS.gene052600 | MS.gene45170 | 0.802116 | 6.53E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene45170 | 0.845007 | 5.31E-59 | -1.69E-46 |
| MS.gene053494 | MS.gene45170 | 0.849649 | 2.82E-60 | -1.69E-46 |
| MS.gene053555 | MS.gene45170 | 0.806862 | 6.69E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene45170 | 0.853972 | 1.68E-61 | -1.69E-46 |
| MS.gene053559 | MS.gene45170 | 0.831769 | 1.38E-55 | -1.69E-46 |
| MS.gene053577 | MS.gene45170 | 0.813322 | 2.71E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene45170 | 0.865269 | 6.67E-65 | -1.69E-46 |
| MS.gene053928 | MS.gene45170 | 0.816867 | 4.43E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene45170 | 0.835532 | 1.59E-56 | -1.69E-46 |
| MS.gene054349 | MS.gene45170 | 0.834219 | 3.40E-56 | -1.69E-46 |
| MS.gene054542 | MS.gene45170 | 0.805959 | 1.04E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene45170 | 0.863409 | 2.54E-64 | -1.69E-46 |
| MS.gene054942 | MS.gene45170 | 0.808372 | 3.20E-50 | -1.69E-46 |
| MS.gene054983 | MS.gene45170 | 0.819144 | 1.36E-52 | -1.69E-46 |
| MS.gene05510 | MS.gene45170 | 0.841396 | 4.87E-58 | -1.69E-46 |
| MS.gene055116 | MS.gene45170 | 0.801387 | 9.22E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene45170 | 0.811281 | 7.57E-51 | -1.69E-46 |
| MS.gene055367 | MS.gene45170 | 0.808428 | 3.11E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene45170 | 0.82134 | 4.25E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene45170 | 0.85652 | 3.04E-62 | -1.69E-46 |
| MS.gene055604 | MS.gene45170 | 0.823251 | 1.53E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene45170 | 0.842219 | 2.96E-58 | -1.69E-46 |
| MS.gene056447 | MS.gene45170 | 0.821382 | 4.16E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene45170 | 0.829811 | 4.18E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene45170 | 0.828199 | 1.03E-54 | -1.69E-46 |
| MS.gene056723 | MS.gene45170 | 0.851617 | 7.90E-61 | -1.69E-46 |
| MS.gene056899 | MS.gene45170 | -0.821727 | 3.46E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene45170 | 0.907029 | 7.88E-81 | -1.69E-46 |
| MS.gene057121 | MS.gene45170 | 0.855796 | 4.96E-62 | -1.69E-46 |
| MS.gene057396 | MS.gene45170 | 0.849997 | 2.26E-60 | -1.69E-46 |
| MS.gene057448 | MS.gene45170 | 0.82506 | 5.76E-54 | -1.69E-46 |
| MS.gene057449 | MS.gene45170 | 0.804331 | 2.27E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene45170 | 0.823535 | 1.31E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene45170 | 0.823622 | 1.25E-53 | -1.69E-46 |
| MS.gene057750 | MS.gene45170 | 0.810461 | 1.14E-50 | -1.69E-46 |
| MS.gene057754 | MS.gene45170 | 0.819958 | 8.83E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene45170 | 0.84923 | 3.69E-60 | -1.69E-46 |
| MS.gene05811 | MS.gene45170 | 0.845866 | 3.11E-59 | -1.69E-46 |
| MS.gene058139 | MS.gene45170 | 0.813973 | 1.95E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene45170 | 0.889655 | 1.99E-73 | -1.69E-46 |
| MS.gene058276 | MS.gene45170 | 0.817923 | 2.56E-52 | -1.69E-46 |
| MS.gene058399 | MS.gene45170 | 0.812531 | 4.05E-51 | -1.69E-46 |
| MS.gene058435 | MS.gene45170 | 0.823941 | 1.06E-53 | -1.69E-46 |
| MS.gene058749 | MS.gene45170 | 0.829852 | 4.08E-55 | -1.69E-46 |
| MS.gene058833 | MS.gene45170 | 0.831379 | 1.73E-55 | -1.69E-46 |
| MS.gene058845 | MS.gene45170 | 0.827837 | 1.25E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene45170 | 0.831993 | 1.22E-55 | -1.69E-46 |
| MS.gene059128 | MS.gene45170 | 0.824445 | 8.04E-54 | -1.69E-46 |
| MS.gene059161 | MS.gene45170 | 0.834383 | 3.09E-56 | -1.69E-46 |
| MS.gene059247 | MS.gene45170 | 0.838408 | 2.93E-57 | -1.69E-46 |
| MS.gene059285 | MS.gene45170 | 0.848451 | 6.08E-60 | -1.69E-46 |
| MS.gene059420 | MS.gene45170 | 0.814414 | 1.56E-51 | -1.69E-46 |
| MS.gene059609 | MS.gene45170 | 0.808293 | 3.33E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene45170 | 0.87045 | 1.45E-66 | -1.69E-46 |
| MS.gene059894 | MS.gene45170 | 0.837239 | 5.84E-57 | -1.69E-46 |
| MS.gene059899 | MS.gene45170 | 0.853487 | 2.31E-61 | -1.69E-46 |
| MS.gene060407 | MS.gene45170 | 0.809019 | 2.33E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene45170 | 0.804729 | 1.88E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene45170 | 0.83117 | 1.94E-55 | -1.69E-46 |
| MS.gene060685 | MS.gene45170 | 0.819332 | 1.23E-52 | -1.69E-46 |
| MS.gene061002 | MS.gene45170 | 0.813839 | 2.09E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene45170 | 0.848692 | 5.21E-60 | -1.69E-46 |
| MS.gene061114 | MS.gene45170 | -0.829853 | 4.08E-55 | -1.69E-46 |
| MS.gene061154 | MS.gene45170 | 0.802708 | 4.93E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene45170 | 0.854699 | 1.03E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45170.t1 | MTR_5g036660 | 98.408 | 628 | 10 | 0 | 1 | 628 | 528 | 1155 | 0.0 | 1266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45170.t1 | AT1G70070 | 66.614 | 635 | 205 | 3 | 1 | 628 | 537 | 1171 | 0.0 | 878 |
Find 141 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGTTGAAGCTTGGGCTTC+TGG | 0.110571 | 5.1:-27227980 | MS.gene45170:CDS |
| CAGAATTGCAGGAAAATTTA+AGG | 0.138511 | 5.1:-27229146 | MS.gene45170:CDS |
| GGATCAATATCTGGCAATTT+AGG | 0.159898 | 5.1:+27227863 | None:intergenic |
| CTTCAGATGGCTGGGCGTGC+TGG | 0.172106 | 5.1:-27229573 | MS.gene45170:CDS |
| ACTCTGAACACGGTGGTTTA+TGG | 0.172637 | 5.1:-27228672 | MS.gene45170:CDS |
| TAAGGGCAGAGAAACGTATT+AGG | 0.244441 | 5.1:-27229128 | MS.gene45170:CDS |
| TACCCAGCAAGTTCACTTAT+TGG | 0.261462 | 5.1:+27227791 | None:intergenic |
| AGCGTGAAACTTTACTTCTT+TGG | 0.264935 | 5.1:+27228521 | None:intergenic |
| TGCAACAATGGATCAATATC+TGG | 0.292867 | 5.1:+27227854 | None:intergenic |
| TCGCAGTTTACTGCTTCTTA+TGG | 0.294587 | 5.1:-27229444 | MS.gene45170:CDS |
| CTCTGAACACGGTGGTTTAT+GGG | 0.308520 | 5.1:-27228671 | MS.gene45170:CDS |
| AGTCAATATCATAGGGTTAT+TGG | 0.311032 | 5.1:-27228086 | MS.gene45170:CDS |
| TGGTTGAAGCTTGGGCTTCT+GGG | 0.314242 | 5.1:-27227979 | MS.gene45170:CDS |
| TCTTGGAGCTTGAACGTTCC+AGG | 0.316057 | 5.1:-27228622 | MS.gene45170:CDS |
| CAGCACCTTCATTAGGAGTT+TGG | 0.317059 | 5.1:+27229511 | None:intergenic |
| GTTTCTCCTGAATTGTCAAT+AGG | 0.330114 | 5.1:+27228047 | None:intergenic |
| AATGTAATTGTTGTTCTTCC+AGG | 0.330657 | 5.1:+27228129 | None:intergenic |
| AAGTTAATTGAGCAAAGTTT+TGG | 0.338780 | 5.1:-27229321 | MS.gene45170:CDS |
| GCAACGGTAGTCAATATCAT+AGG | 0.346140 | 5.1:-27228094 | MS.gene45170:CDS |
| AAATGCCCTATTGACAATTC+AGG | 0.354868 | 5.1:-27228053 | MS.gene45170:CDS |
| CCCGATGTTCCGTTAGTTCA+AGG | 0.360849 | 5.1:-27228766 | MS.gene45170:CDS |
| CAAGGAGATTGCAGAATTGC+AGG | 0.367183 | 5.1:-27229157 | MS.gene45170:CDS |
| CACTCTTCAGCACCTTCATT+AGG | 0.367766 | 5.1:+27229504 | None:intergenic |
| TGCTGCAGTGTGTGCAGGTT+TGG | 0.368781 | 5.1:-27228176 | MS.gene45170:CDS |
| TTCAGATGGCTGGGCGTGCT+GGG | 0.385541 | 5.1:-27229572 | MS.gene45170:CDS |
| CTCAGCAAAAGAAGTGATAA+TGG | 0.386447 | 5.1:-27229624 | MS.gene45170:CDS |
| GATCCAAACGTCTGACTAAT+CGG | 0.393800 | 5.1:-27228399 | MS.gene45170:CDS |
| TTGTGGTATGGTTGAAGCTT+GGG | 0.396257 | 5.1:-27227987 | MS.gene45170:CDS |
| AATGAACTGCTTCAGATGGC+TGG | 0.407138 | 5.1:-27229582 | MS.gene45170:CDS |
| GACGAGATGAAAACTTCATC+AGG | 0.407871 | 5.1:-27229366 | MS.gene45170:CDS |
| TTTCTCCTGAATTGTCAATA+GGG | 0.407906 | 5.1:+27228048 | None:intergenic |
| TATCCGATTAGTCAGACGTT+TGG | 0.408121 | 5.1:+27228396 | None:intergenic |
| CTCTTCTAATAATGGTTTCA+AGG | 0.410172 | 5.1:+27229065 | None:intergenic |
| CTTCAACCATACCACAAAAC+TGG | 0.424099 | 5.1:+27227993 | None:intergenic |
| CCTCCAATAAGTGAACTTGC+TGG | 0.427316 | 5.1:-27227794 | MS.gene45170:CDS |
| AGAATTGCAGGAAAATTTAA+GGG | 0.428014 | 5.1:-27229145 | MS.gene45170:CDS |
| GTTTACTGCTTCTTATGGTA+TGG | 0.429661 | 5.1:-27229439 | MS.gene45170:CDS |
| TGTATTAATATCTAAAGCTC+TGG | 0.446120 | 5.1:+27228312 | None:intergenic |
| AAGGGCAGAGAAACGTATTA+GGG | 0.447626 | 5.1:-27229127 | MS.gene45170:CDS |
| ATGGGTCACGGAAGGATCTC+TGG | 0.450864 | 5.1:-27228653 | MS.gene45170:CDS |
| CATCTGAAGCAGTTCATTTG+AGG | 0.451663 | 5.1:+27229587 | None:intergenic |
| CCATCATATCATGTAGCTCT+TGG | 0.452287 | 5.1:-27228853 | MS.gene45170:CDS |
| GGTGGCAATATCTTGCTGTT+TGG | 0.454732 | 5.1:-27228020 | MS.gene45170:CDS |
| TTGGGAAAGGTCGACTCCCT+TGG | 0.462085 | 5.1:-27228967 | MS.gene45170:CDS |
| TTTGTGGTATGGTTGAAGCT+TGG | 0.462512 | 5.1:-27227988 | MS.gene45170:CDS |
| GATCTCTGGAGACATGGTCT+TGG | 0.464034 | 5.1:-27228639 | MS.gene45170:CDS |
| CTTGGGCTTCTGGGTTGACA+TGG | 0.465502 | 5.1:-27227970 | MS.gene45170:CDS |
| AACTTCATCAGGGAAAACTT+TGG | 0.466456 | 5.1:-27229355 | MS.gene45170:CDS |
| CTCTTGGCTCAGATAACTCT+TGG | 0.469381 | 5.1:-27228837 | MS.gene45170:CDS |
| TGTTATGCTGGCTGCTAAAG+AGG | 0.472502 | 5.1:-27229280 | MS.gene45170:CDS |
| CAACTTGCTGCAGTGTGTGC+AGG | 0.476392 | 5.1:-27228181 | MS.gene45170:CDS |
| GGTATCTATTTACAGAAAAG+TGG | 0.477491 | 5.1:-27228816 | MS.gene45170:CDS |
| ACTCATAATTTCTCGAGGTC+GGG | 0.488083 | 5.1:+27228738 | None:intergenic |
| TCAGCAAAAGAAGTGATAAT+GGG | 0.488168 | 5.1:-27229623 | MS.gene45170:CDS |
| GCTACATGATATGATGGTAC+AGG | 0.490168 | 5.1:+27228859 | None:intergenic |
| CCGATGTTCCGTTAGTTCAA+GGG | 0.492311 | 5.1:-27228765 | MS.gene45170:CDS |
| CACTCATAATTTCTCGAGGT+CGG | 0.494647 | 5.1:+27228737 | None:intergenic |
| TGTTAGTAGCAGTGTTATGC+TGG | 0.495742 | 5.1:-27229292 | MS.gene45170:CDS |
| CACACTGCAGCAAGTTGTGC+AGG | 0.501649 | 5.1:+27228187 | None:intergenic |
| CCTTGAACTAACGGAACATC+GGG | 0.501935 | 5.1:+27228766 | None:intergenic |
| TATGAGTGATCTCCTTGATA+AGG | 0.505522 | 5.1:-27228722 | MS.gene45170:CDS |
| ATGTAATTGTTGTTCTTCCA+GGG | 0.517143 | 5.1:+27228130 | None:intergenic |
| TTCGTGGGGAAAATGAACTA+TGG | 0.517572 | 5.1:-27228252 | MS.gene45170:CDS |
| TCAGAGAAGCTACTCAAACC+TGG | 0.521169 | 5.1:+27228604 | None:intergenic |
| GAAATAACAGCTGTTCTAGC+AGG | 0.521727 | 5.1:+27229651 | None:intergenic |
| CCCTTGAACTAACGGAACAT+CGG | 0.522108 | 5.1:+27228765 | None:intergenic |
| CCAAGAGCTACATGATATGA+TGG | 0.524587 | 5.1:+27228853 | None:intergenic |
| ATGAACTGCTTCAGATGGCT+GGG | 0.525138 | 5.1:-27229581 | MS.gene45170:CDS |
| AATTGAACCCTCAGGTTGGA+AGG | 0.531560 | 5.1:-27228368 | MS.gene45170:CDS |
| CCAGCAAGTTCACTTATTGG+AGG | 0.532502 | 5.1:+27227794 | None:intergenic |
| TTTATCACAGCGACAATACA+AGG | 0.536890 | 5.1:-27229175 | MS.gene45170:CDS |
| CTTCATTAGGAGTTTGGACG+AGG | 0.537266 | 5.1:+27229517 | None:intergenic |
| ATCTAGCTCGTCTCCTTCGA+AGG | 0.537617 | 5.1:-27227910 | MS.gene45170:CDS |
| AATCTGAGCTAATAGATCAA+TGG | 0.538310 | 5.1:+27227886 | None:intergenic |
| ACTTCATGTCCTCCTTATCA+AGG | 0.539735 | 5.1:+27228710 | None:intergenic |
| CTCCAATAAGTGAACTTGCT+GGG | 0.541007 | 5.1:-27227793 | MS.gene45170:CDS |
| ATTAAAACAGTATATGAGAC+AGG | 0.545363 | 5.1:-27228793 | MS.gene45170:CDS |
| CGATGTTCCGTTAGTTCAAG+GGG | 0.545809 | 5.1:-27228764 | MS.gene45170:CDS |
| CGGGTATCCCCTTGAACTAA+CGG | 0.549497 | 5.1:+27228757 | None:intergenic |
| CTCGTCCAAACTCCTAATGA+AGG | 0.550003 | 5.1:-27229516 | MS.gene45170:CDS |
| CGGAAGGATCTCTGGAGACA+TGG | 0.550388 | 5.1:-27228645 | MS.gene45170:CDS |
| GGAAAACTTTGGATGAAGCT+AGG | 0.551284 | 5.1:-27229344 | MS.gene45170:CDS |
| AACAAATTGAACCCTCAGGT+TGG | 0.551715 | 5.1:-27228372 | MS.gene45170:CDS |
| GAAACTGCTTCAGCAATTCG+TGG | 0.558446 | 5.1:-27228268 | MS.gene45170:CDS |
| CACCGTGTTCAGAGTTAGCA+AGG | 0.561723 | 5.1:+27228680 | None:intergenic |
| GGGTCTGACTTTAATCCCCT+CGG | 0.563352 | 5.1:+27228150 | None:intergenic |
| AAGAAGATATCTCGTACTGA+AGG | 0.563790 | 5.1:-27228493 | MS.gene45170:CDS |
| AGGTTGGAAGGAGTTTATGC+AGG | 0.564082 | 5.1:-27228356 | MS.gene45170:CDS |
| GACATGGAGAGAAATAATGA+TGG | 0.565919 | 5.1:-27227954 | MS.gene45170:CDS |
| GGCTGAATTGCGAAGACAGA+AGG | 0.568618 | 5.1:-27229106 | MS.gene45170:CDS |
| TGTGCAGGTTTGGTATCCGA+GGG | 0.569000 | 5.1:-27228166 | MS.gene45170:CDS |
| CGTAGAGGCATTGATGAAAG+TGG | 0.569588 | 5.1:-27229549 | MS.gene45170:CDS |
| AAACTGCTTCAGCAATTCGT+GGG | 0.570730 | 5.1:-27228267 | MS.gene45170:CDS |
| ATGGATTGTGCAATGGATGA+TGG | 0.572243 | 5.1:-27227935 | MS.gene45170:CDS |
| CATTGTTGCAAAAGAATGCA+AGG | 0.573962 | 5.1:-27227841 | MS.gene45170:CDS |
| CAACGGTAGTCAATATCATA+GGG | 0.580581 | 5.1:-27228093 | MS.gene45170:CDS |
| CATTTATGAGCCTTCTGCAA+CGG | 0.582134 | 5.1:-27228110 | MS.gene45170:CDS |
| TTGACAATTCAGGAGAAACA+TGG | 0.583264 | 5.1:-27228043 | MS.gene45170:CDS |
| GCTGGGCGTGCTGGGCGTAG+AGG | 0.584556 | 5.1:-27229564 | MS.gene45170:CDS |
| AATAATGATGGATTGTGCAA+TGG | 0.586813 | 5.1:-27227942 | MS.gene45170:CDS |
| GTGTGCAGGTTTGGTATCCG+AGG | 0.587455 | 5.1:-27228167 | MS.gene45170:CDS |
| CAGTTCATTTGAGGTCAACA+AGG | 0.589035 | 5.1:+27229596 | None:intergenic |
| ATAGAACAAATTGAACCCTC+AGG | 0.589569 | 5.1:-27228376 | MS.gene45170:CDS |
| CTACATGATATGATGGTACA+GGG | 0.590670 | 5.1:+27228860 | None:intergenic |
| CTCAAATGAACTGCTTCAGA+TGG | 0.592097 | 5.1:-27229586 | MS.gene45170:CDS |
| GCTGAAGCAGTTTCTCCTAG+TGG | 0.595938 | 5.1:+27228277 | None:intergenic |
| CGATGTGTTTGACCTACGAA+GGG | 0.599749 | 5.1:+27229389 | None:intergenic |
| GAGTGATCTCCTTGATAAGG+AGG | 0.601120 | 5.1:-27228719 | MS.gene45170:CDS |
| GTGGTGGGAAAGCCCTTCGT+AGG | 0.601189 | 5.1:-27229401 | MS.gene45170:CDS |
| ATAGATCAATGGTCCTTCGA+AGG | 0.603162 | 5.1:+27227897 | None:intergenic |
| TAGCTTCTCTGAAAATGAAG+AGG | 0.603633 | 5.1:-27228593 | MS.gene45170:CDS |
| CCGATGTGTTTGACCTACGA+AGG | 0.604764 | 5.1:+27229388 | None:intergenic |
| TGACAATTCAGGAGAAACAT+GGG | 0.607549 | 5.1:-27228042 | MS.gene45170:CDS |
| ATATTGACTACCGTTGCAGA+AGG | 0.609439 | 5.1:+27228100 | None:intergenic |
| CATAAACTCCTTCCAACCTG+AGG | 0.612732 | 5.1:+27228360 | None:intergenic |
| TTGATAAGGAGGACATGAAG+TGG | 0.616263 | 5.1:-27228708 | MS.gene45170:CDS |
| TTTGAGTTTCGAAGCACCAA+GGG | 0.617215 | 5.1:+27228951 | None:intergenic |
| AAATGAACTATGGCTCGCAA+TGG | 0.629100 | 5.1:-27228242 | MS.gene45170:CDS |
| CTGCTTATGATGTCATGGAT+CGG | 0.632506 | 5.1:-27227817 | MS.gene45170:CDS |
| AGGGGATTAAAGTCAGACCC+TGG | 0.634350 | 5.1:-27228147 | MS.gene45170:CDS |
| ACACGGTGGTTTATGGGTCA+CGG | 0.640282 | 5.1:-27228665 | MS.gene45170:CDS |
| TGATAAGGAGGACATGAAGT+GGG | 0.640881 | 5.1:-27228707 | MS.gene45170:CDS |
| ATAAACTCCTTCCAACCTGA+GGG | 0.643381 | 5.1:+27228361 | None:intergenic |
| AACCTTGCTAACTCTGAACA+CGG | 0.653305 | 5.1:-27228682 | MS.gene45170:CDS |
| ACGAGATGAAAACTTCATCA+GGG | 0.657064 | 5.1:-27229365 | MS.gene45170:CDS |
| AAGGGCTGCTTATGATGTCA+TGG | 0.662822 | 5.1:-27227822 | MS.gene45170:CDS |
| GCAGTAAACTGCGACACCAG+AGG | 0.662858 | 5.1:+27229453 | None:intergenic |
| ATTGTTGCAAAAGAATGCAA+GGG | 0.663282 | 5.1:-27227840 | MS.gene45170:CDS |
| AACTGCTTCAGCAATTCGTG+GGG | 0.666163 | 5.1:-27228266 | MS.gene45170:CDS |
| GGTGGTTTATGGGTCACGGA+AGG | 0.672711 | 5.1:-27228661 | MS.gene45170:CDS |
| AGATCACTCATAATTTCTCG+AGG | 0.676838 | 5.1:+27228733 | None:intergenic |
| TTCTAATAATGGTTTCAAGG+CGG | 0.680101 | 5.1:+27229068 | None:intergenic |
| ACACATGTGATATATCCACT+AGG | 0.684073 | 5.1:-27228292 | MS.gene45170:CDS |
| CCTTCGTAGGTCAAACACAT+CGG | 0.690815 | 5.1:-27229388 | MS.gene45170:CDS |
| AGACGCAGTCAAGTTTACTG+AGG | 0.692111 | 5.1:-27228446 | MS.gene45170:CDS |
| TTACAGTATAGAGATTCTGA+CGG | 0.703557 | 5.1:-27229018 | MS.gene45170:CDS |
| AATTCAGGAGAAACATGGGG+TGG | 0.710734 | 5.1:-27228038 | MS.gene45170:CDS |
| GACAATTCAGGAGAAACATG+GGG | 0.712982 | 5.1:-27228041 | MS.gene45170:CDS |
| GTGCAGGTTTGGTATCCGAG+GGG | 0.715765 | 5.1:-27228165 | MS.gene45170:CDS |
| AGGTGCTGAAGAGTGCTGCA+AGG | 0.716768 | 5.1:-27229496 | MS.gene45170:CDS |
| CTTGCTAACTCTGAACACGG+TGG | 0.759488 | 5.1:-27228679 | MS.gene45170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGAATTGCAGGAAAATTTAA+GGG | - | chr5.1:27228299-27228318 | MS.gene45170:CDS | 25.0% |
| ! | ATTAAAACAGTATATGAGAC+AGG | - | chr5.1:27228651-27228670 | MS.gene45170:CDS | 25.0% |
| !! | AAGTTAATTGAGCAAAGTTT+TGG | - | chr5.1:27228123-27228142 | MS.gene45170:CDS | 25.0% |
| !! | TGTATTAATATCTAAAGCTC+TGG | + | chr5.1:27229135-27229154 | None:intergenic | 25.0% |
| !! | TTTTCGAACTCTTCTAATAA+TGG | + | chr5.1:27228390-27228409 | None:intergenic | 25.0% |
| AAGCCATAGATAGAAAAAGT+AGG | - | chr5.1:27228241-27228260 | MS.gene45170:CDS | 30.0% | |
| AATCTGAGCTAATAGATCAA+TGG | + | chr5.1:27229561-27229580 | None:intergenic | 30.0% | |
| AGTCAATATCATAGGGTTAT+TGG | - | chr5.1:27229358-27229377 | MS.gene45170:CDS | 30.0% | |
| ATTGTTGCAAAAGAATGCAA+GGG | - | chr5.1:27229604-27229623 | MS.gene45170:CDS | 30.0% | |
| CAGAATTGCAGGAAAATTTA+AGG | - | chr5.1:27228298-27228317 | MS.gene45170:CDS | 30.0% | |
| CATAGATAGAAAAAGTAGGA+AGG | - | chr5.1:27228245-27228264 | MS.gene45170:CDS | 30.0% | |
| CTATACTGTAAGCACAAAAA+TGG | + | chr5.1:27228417-27228436 | None:intergenic | 30.0% | |
| CTCTTCTAATAATGGTTTCA+AGG | + | chr5.1:27228382-27228401 | None:intergenic | 30.0% | |
| GGTATCTATTTACAGAAAAG+TGG | - | chr5.1:27228628-27228647 | MS.gene45170:CDS | 30.0% | |
| TCAGCAAAAGAAGTGATAAT+GGG | - | chr5.1:27227821-27227840 | MS.gene45170:CDS | 30.0% | |
| TCGAAACTCAAAAACATGAT+CGG | - | chr5.1:27228504-27228523 | MS.gene45170:CDS | 30.0% | |
| TTACAGTATAGAGATTCTGA+CGG | - | chr5.1:27228426-27228445 | MS.gene45170:CDS | 30.0% | |
| TTCTAATAATGGTTTCAAGG+CGG | + | chr5.1:27228379-27228398 | None:intergenic | 30.0% | |
| TTTCTCCTGAATTGTCAATA+GGG | + | chr5.1:27229399-27229418 | None:intergenic | 30.0% | |
| ! | AATGTAATTGTTGTTCTTCC+AGG | + | chr5.1:27229318-27229337 | None:intergenic | 30.0% |
| ! | ATGTAATTGTTGTTCTTCCA+GGG | + | chr5.1:27229317-27229336 | None:intergenic | 30.0% |
| ! | ATTATCACTTCTTTTGCTGA+GGG | + | chr5.1:27227821-27227840 | None:intergenic | 30.0% |
| !! | AATAATGATGGATTGTGCAA+TGG | - | chr5.1:27229502-27229521 | MS.gene45170:CDS | 30.0% |
| !!! | CTTCCTACTTTTTCTATCTA+TGG | + | chr5.1:27228247-27228266 | None:intergenic | 30.0% |
| AAATGCCCTATTGACAATTC+AGG | - | chr5.1:27229391-27229410 | MS.gene45170:CDS | 35.0% | |
| AACTTCATCAGGGAAAACTT+TGG | - | chr5.1:27228089-27228108 | MS.gene45170:CDS | 35.0% | |
| AAGAAGATATCTCGTACTGA+AGG | - | chr5.1:27228951-27228970 | MS.gene45170:CDS | 35.0% | |
| ACACATGTGATATATCCACT+AGG | - | chr5.1:27229152-27229171 | MS.gene45170:CDS | 35.0% | |
| ACGAGATGAAAACTTCATCA+GGG | - | chr5.1:27228079-27228098 | MS.gene45170:CDS | 35.0% | |
| AGATCACTCATAATTTCTCG+AGG | + | chr5.1:27228714-27228733 | None:intergenic | 35.0% | |
| AGCGTGAAACTTTACTTCTT+TGG | + | chr5.1:27228926-27228945 | None:intergenic | 35.0% | |
| ATAGAACAAATTGAACCCTC+AGG | - | chr5.1:27229068-27229087 | MS.gene45170:CDS | 35.0% | |
| CAACGGTAGTCAATATCATA+GGG | - | chr5.1:27229351-27229370 | MS.gene45170:CDS | 35.0% | |
| CATTGTTGCAAAAGAATGCA+AGG | - | chr5.1:27229603-27229622 | MS.gene45170:CDS | 35.0% | |
| CTACATGATATGATGGTACA+GGG | + | chr5.1:27228587-27228606 | None:intergenic | 35.0% | |
| CTCAGCAAAAGAAGTGATAA+TGG | - | chr5.1:27227820-27227839 | MS.gene45170:CDS | 35.0% | |
| GACATGGAGAGAAATAATGA+TGG | - | chr5.1:27229490-27229509 | MS.gene45170:CDS | 35.0% | |
| GGATCAATATCTGGCAATTT+AGG | + | chr5.1:27229584-27229603 | None:intergenic | 35.0% | |
| GTTTACTGCTTCTTATGGTA+TGG | - | chr5.1:27228005-27228024 | MS.gene45170:CDS | 35.0% | |
| GTTTCTCCTGAATTGTCAAT+AGG | + | chr5.1:27229400-27229419 | None:intergenic | 35.0% | |
| TATGAGTGATCTCCTTGATA+AGG | - | chr5.1:27228722-27228741 | MS.gene45170:CDS | 35.0% | |
| TGACAATTCAGGAGAAACAT+GGG | - | chr5.1:27229402-27229421 | MS.gene45170:CDS | 35.0% | |
| TGCAACAATGGATCAATATC+TGG | + | chr5.1:27229593-27229612 | None:intergenic | 35.0% | |
| TTGACAATTCAGGAGAAACA+TGG | - | chr5.1:27229401-27229420 | MS.gene45170:CDS | 35.0% | |
| TTTATCACAGCGACAATACA+AGG | - | chr5.1:27228269-27228288 | MS.gene45170:CDS | 35.0% | |
| ! | CATTATCACTTCTTTTGCTG+AGG | + | chr5.1:27227822-27227841 | None:intergenic | 35.0% |
| ! | CTTGCATTCTTTTGCAACAA+TGG | + | chr5.1:27229605-27229624 | None:intergenic | 35.0% |
| ! | TAGCTTCTCTGAAAATGAAG+AGG | - | chr5.1:27228851-27228870 | MS.gene45170:CDS | 35.0% |
| ! | TCAATTCCTGCTGTGTTTTT+GGG | - | chr5.1:27228459-27228478 | MS.gene45170:CDS | 35.0% |
| ! | TTCAATTCCTGCTGTGTTTT+TGG | - | chr5.1:27228458-27228477 | MS.gene45170:CDS | 35.0% |
| !! | TTTTGAATCTTCTTGGTGGT+GGG | - | chr5.1:27228028-27228047 | MS.gene45170:CDS | 35.0% |
| !!! | ATGGTTTTGAATCTTCTTGG+TGG | - | chr5.1:27228024-27228043 | MS.gene45170:CDS | 35.0% |
| !!! | GGTATGGTTTTGAATCTTCT+TGG | - | chr5.1:27228021-27228040 | MS.gene45170:CDS | 35.0% |
| AAACTGCTTCAGCAATTCGT+GGG | - | chr5.1:27229177-27229196 | MS.gene45170:CDS | 40.0% | |
| AAATGAACTATGGCTCGCAA+TGG | - | chr5.1:27229202-27229221 | MS.gene45170:CDS | 40.0% | |
| AACAAATTGAACCCTCAGGT+TGG | - | chr5.1:27229072-27229091 | MS.gene45170:CDS | 40.0% | |
| AACCTTGCTAACTCTGAACA+CGG | - | chr5.1:27228762-27228781 | MS.gene45170:CDS | 40.0% | |
| AAGGGCAGAGAAACGTATTA+GGG | - | chr5.1:27228317-27228336 | MS.gene45170:CDS | 40.0% | |
| ACTCATAATTTCTCGAGGTC+GGG | + | chr5.1:27228709-27228728 | None:intergenic | 40.0% | |
| ACTTCATGTCCTCCTTATCA+AGG | + | chr5.1:27228737-27228756 | None:intergenic | 40.0% | |
| ATAAACTCCTTCCAACCTGA+GGG | + | chr5.1:27229086-27229105 | None:intergenic | 40.0% | |
| ATAGATCAATGGTCCTTCGA+AGG | + | chr5.1:27229550-27229569 | None:intergenic | 40.0% | |
| CACTCATAATTTCTCGAGGT+CGG | + | chr5.1:27228710-27228729 | None:intergenic | 40.0% | |
| CATTTATGAGCCTTCTGCAA+CGG | - | chr5.1:27229334-27229353 | MS.gene45170:CDS | 40.0% | |
| CCAAGAGCTACATGATATGA+TGG | + | chr5.1:27228594-27228613 | None:intergenic | 40.0% | |
| CCATCATATCATGTAGCTCT+TGG | - | chr5.1:27228591-27228610 | MS.gene45170:CDS | 40.0% | |
| CTCAAATGAACTGCTTCAGA+TGG | - | chr5.1:27227858-27227877 | MS.gene45170:CDS | 40.0% | |
| CTGCTTATGATGTCATGGAT+CGG | - | chr5.1:27229627-27229646 | MS.gene45170:CDS | 40.0% | |
| CTTCAACCATACCACAAAAC+TGG | + | chr5.1:27229454-27229473 | None:intergenic | 40.0% | |
| GAAATAACAGCTGTTCTAGC+AGG | + | chr5.1:27227796-27227815 | None:intergenic | 40.0% | |
| GACAATTCAGGAGAAACATG+GGG | - | chr5.1:27229403-27229422 | MS.gene45170:CDS | 40.0% | |
| GACGAGATGAAAACTTCATC+AGG | - | chr5.1:27228078-27228097 | MS.gene45170:CDS | 40.0% | |
| GATCCAAACGTCTGACTAAT+CGG | - | chr5.1:27229045-27229064 | MS.gene45170:CDS | 40.0% | |
| GCAACGGTAGTCAATATCAT+AGG | - | chr5.1:27229350-27229369 | MS.gene45170:CDS | 40.0% | |
| GCTACATGATATGATGGTAC+AGG | + | chr5.1:27228588-27228607 | None:intergenic | 40.0% | |
| GGAAAACTTTGGATGAAGCT+AGG | - | chr5.1:27228100-27228119 | MS.gene45170:CDS | 40.0% | |
| TAAGGGCAGAGAAACGTATT+AGG | - | chr5.1:27228316-27228335 | MS.gene45170:CDS | 40.0% | |
| TACCCAGCAAGTTCACTTAT+TGG | + | chr5.1:27229656-27229675 | None:intergenic | 40.0% | |
| TCGCAGTTTACTGCTTCTTA+TGG | - | chr5.1:27228000-27228019 | MS.gene45170:CDS | 40.0% | |
| TGATAAGGAGGACATGAAGT+GGG | - | chr5.1:27228737-27228756 | MS.gene45170:CDS | 40.0% | |
| TGTTAGTAGCAGTGTTATGC+TGG | - | chr5.1:27228152-27228171 | MS.gene45170:CDS | 40.0% | |
| TTCGTGGGGAAAATGAACTA+TGG | - | chr5.1:27229192-27229211 | MS.gene45170:CDS | 40.0% | |
| TTGATAAGGAGGACATGAAG+TGG | - | chr5.1:27228736-27228755 | MS.gene45170:CDS | 40.0% | |
| TTGTGGTATGGTTGAAGCTT+GGG | - | chr5.1:27229457-27229476 | MS.gene45170:CDS | 40.0% | |
| TTTGTGGTATGGTTGAAGCT+TGG | - | chr5.1:27229456-27229475 | MS.gene45170:CDS | 40.0% | |
| ! | ATATTGACTACCGTTGCAGA+AGG | + | chr5.1:27229347-27229366 | None:intergenic | 40.0% |
| ! | ATGGATTGTGCAATGGATGA+TGG | - | chr5.1:27229509-27229528 | MS.gene45170:CDS | 40.0% |
| ! | CAGTTCATTTGAGGTCAACA+AGG | + | chr5.1:27227851-27227870 | None:intergenic | 40.0% |
| ! | CATCTGAAGCAGTTCATTTG+AGG | + | chr5.1:27227860-27227879 | None:intergenic | 40.0% |
| ! | CTCCAATAAGTGAACTTGCT+GGG | - | chr5.1:27229651-27229670 | MS.gene45170:CDS | 40.0% |
| ! | TATCCGATTAGTCAGACGTT+TGG | + | chr5.1:27229051-27229070 | None:intergenic | 40.0% |
| ! | TGTTTGGATAGCCAGTTTTG+TGG | - | chr5.1:27229440-27229459 | MS.gene45170:CDS | 40.0% |
| ! | TTTGAGTTTCGAAGCACCAA+GGG | + | chr5.1:27228496-27228515 | None:intergenic | 40.0% |
| !! | GTTTTGAATCTTCTTGGTGG+TGG | - | chr5.1:27228027-27228046 | MS.gene45170:CDS | 40.0% |
| !!! | TGCTGCAAGGTACTTTTTTC+TGG | - | chr5.1:27227961-27227980 | MS.gene45170:CDS | 40.0% |
| !!! | TTTTGAGTTTCGAAGCACCA+AGG | + | chr5.1:27228497-27228516 | None:intergenic | 40.0% |
| AACTGCTTCAGCAATTCGTG+GGG | - | chr5.1:27229178-27229197 | MS.gene45170:CDS | 45.0% | |
| AAGGGCTGCTTATGATGTCA+TGG | - | chr5.1:27229622-27229641 | MS.gene45170:CDS | 45.0% | |
| AATGAACTGCTTCAGATGGC+TGG | - | chr5.1:27227862-27227881 | MS.gene45170:CDS | 45.0% | |
| AATTCAGGAGAAACATGGGG+TGG | - | chr5.1:27229406-27229425 | MS.gene45170:CDS | 45.0% | |
| ACCTTTCCCAAAAACACAGC+AGG | + | chr5.1:27228468-27228487 | None:intergenic | 45.0% | |
| ACTCTGAACACGGTGGTTTA+TGG | - | chr5.1:27228772-27228791 | MS.gene45170:CDS | 45.0% | |
| AGACGCAGTCAAGTTTACTG+AGG | - | chr5.1:27228998-27229017 | MS.gene45170:CDS | 45.0% | |
| AGGTTGGAAGGAGTTTATGC+AGG | - | chr5.1:27229088-27229107 | MS.gene45170:CDS | 45.0% | |
| ATGAACTGCTTCAGATGGCT+GGG | - | chr5.1:27227863-27227882 | MS.gene45170:CDS | 45.0% | |
| CAAGGAGATTGCAGAATTGC+AGG | - | chr5.1:27228287-27228306 | MS.gene45170:CDS | 45.0% | |
| CACTCTTCAGCACCTTCATT+AGG | + | chr5.1:27227943-27227962 | None:intergenic | 45.0% | |
| CAGCACCTTCATTAGGAGTT+TGG | + | chr5.1:27227936-27227955 | None:intergenic | 45.0% | |
| CATAAACTCCTTCCAACCTG+AGG | + | chr5.1:27229087-27229106 | None:intergenic | 45.0% | |
| CCAGCAAGTTCACTTATTGG+AGG | + | chr5.1:27229653-27229672 | None:intergenic | 45.0% | |
| CCCTTGAACTAACGGAACAT+CGG | + | chr5.1:27228682-27228701 | None:intergenic | 45.0% | |
| CCGATGTTCCGTTAGTTCAA+GGG | - | chr5.1:27228679-27228698 | MS.gene45170:CDS | 45.0% | |
| CCTCCAATAAGTGAACTTGC+TGG | - | chr5.1:27229650-27229669 | MS.gene45170:CDS | 45.0% | |
| CCTTCGTAGGTCAAACACAT+CGG | - | chr5.1:27228056-27228075 | MS.gene45170:CDS | 45.0% | |
| CCTTGAACTAACGGAACATC+GGG | + | chr5.1:27228681-27228700 | None:intergenic | 45.0% | |
| CGATGTGTTTGACCTACGAA+GGG | + | chr5.1:27228058-27228077 | None:intergenic | 45.0% | |
| CGATGTTCCGTTAGTTCAAG+GGG | - | chr5.1:27228680-27228699 | MS.gene45170:CDS | 45.0% | |
| CTCGTCCAAACTCCTAATGA+AGG | - | chr5.1:27227928-27227947 | MS.gene45170:CDS | 45.0% | |
| CTCTGAACACGGTGGTTTAT+GGG | - | chr5.1:27228773-27228792 | MS.gene45170:CDS | 45.0% | |
| CTCTTGGCTCAGATAACTCT+TGG | - | chr5.1:27228607-27228626 | MS.gene45170:CDS | 45.0% | |
| CTTCATTAGGAGTTTGGACG+AGG | + | chr5.1:27227930-27227949 | None:intergenic | 45.0% | |
| GAAACTGCTTCAGCAATTCG+TGG | - | chr5.1:27229176-27229195 | MS.gene45170:CDS | 45.0% | |
| GAGTGATCTCCTTGATAAGG+AGG | - | chr5.1:27228725-27228744 | MS.gene45170:CDS | 45.0% | |
| TCAGAGAAGCTACTCAAACC+TGG | + | chr5.1:27228843-27228862 | None:intergenic | 45.0% | |
| ! | TGTTATGCTGGCTGCTAAAG+AGG | - | chr5.1:27228164-27228183 | MS.gene45170:CDS | 45.0% |
| ! | TTTTTCTGGACTTGAGCCTC+TGG | - | chr5.1:27227975-27227994 | MS.gene45170:CDS | 45.0% |
| !! | AATTGAACCCTCAGGTTGGA+AGG | - | chr5.1:27229076-27229095 | MS.gene45170:CDS | 45.0% |
| !! | CGTAGAGGCATTGATGAAAG+TGG | - | chr5.1:27227895-27227914 | MS.gene45170:CDS | 45.0% |
| !! | GGATAGCCAGTTTTGTGGTA+TGG | - | chr5.1:27229445-27229464 | MS.gene45170:CDS | 45.0% |
| !! | GGTGGCAATATCTTGCTGTT+TGG | - | chr5.1:27229424-27229443 | MS.gene45170:CDS | 45.0% |
| !!! | TCCTGCTGTGTTTTTGGGAA+AGG | - | chr5.1:27228464-27228483 | MS.gene45170:CDS | 45.0% |
| ACACGGTGGTTTATGGGTCA+CGG | - | chr5.1:27228779-27228798 | MS.gene45170:CDS | 50.0% | |
| AGGGGATTAAAGTCAGACCC+TGG | - | chr5.1:27229297-27229316 | MS.gene45170:CDS | 50.0% | |
| ATGGTTGAAGCTTGGGCTTC+TGG | - | chr5.1:27229464-27229483 | MS.gene45170:CDS | 50.0% | |
| CACCGTGTTCAGAGTTAGCA+AGG | + | chr5.1:27228767-27228786 | None:intergenic | 50.0% | |
| CCCGATGTTCCGTTAGTTCA+AGG | - | chr5.1:27228678-27228697 | MS.gene45170:CDS | 50.0% | |
| CCGATGTGTTTGACCTACGA+AGG | + | chr5.1:27228059-27228078 | None:intergenic | 50.0% | |
| CGGGTATCCCCTTGAACTAA+CGG | + | chr5.1:27228690-27228709 | None:intergenic | 50.0% | |
| CTTGCTAACTCTGAACACGG+TGG | - | chr5.1:27228765-27228784 | MS.gene45170:CDS | 50.0% | |
| GCTGAAGCAGTTTCTCCTAG+TGG | + | chr5.1:27229170-27229189 | None:intergenic | 50.0% | |
| GGCTGAATTGCGAAGACAGA+AGG | - | chr5.1:27228338-27228357 | MS.gene45170:CDS | 50.0% | |
| GGGTCTGACTTTAATCCCCT+CGG | + | chr5.1:27229297-27229316 | None:intergenic | 50.0% | |
| TCTTGGAGCTTGAACGTTCC+AGG | - | chr5.1:27228822-27228841 | MS.gene45170:CDS | 50.0% | |
| TGGTTGAAGCTTGGGCTTCT+GGG | - | chr5.1:27229465-27229484 | MS.gene45170:CDS | 50.0% | |
| ! | ATCTAGCTCGTCTCCTTCGA+AGG | - | chr5.1:27229534-27229553 | MS.gene45170:CDS | 50.0% |
| ! | GATCTCTGGAGACATGGTCT+TGG | - | chr5.1:27228805-27228824 | MS.gene45170:CDS | 50.0% |
| ! | TGTGCAGGTTTGGTATCCGA+GGG | - | chr5.1:27229278-27229297 | MS.gene45170:CDS | 50.0% |
| ATGGGTCACGGAAGGATCTC+TGG | - | chr5.1:27228791-27228810 | MS.gene45170:CDS | 55.0% | |
| CACACTGCAGCAAGTTGTGC+AGG | + | chr5.1:27229260-27229279 | None:intergenic | 55.0% | |
| GCAGTAAACTGCGACACCAG+AGG | + | chr5.1:27227994-27228013 | None:intergenic | 55.0% | |
| GGTGGTTTATGGGTCACGGA+AGG | - | chr5.1:27228783-27228802 | MS.gene45170:CDS | 55.0% | |
| TGCTGCAGTGTGTGCAGGTT+TGG | - | chr5.1:27229268-27229287 | MS.gene45170:CDS | 55.0% | |
| ! | CGGAAGGATCTCTGGAGACA+TGG | - | chr5.1:27228799-27228818 | MS.gene45170:CDS | 55.0% |
| ! | CTTGGGCTTCTGGGTTGACA+TGG | - | chr5.1:27229474-27229493 | MS.gene45170:CDS | 55.0% |
| ! | GTGCAGGTTTGGTATCCGAG+GGG | - | chr5.1:27229279-27229298 | MS.gene45170:CDS | 55.0% |
| ! | GTGTGCAGGTTTGGTATCCG+AGG | - | chr5.1:27229277-27229296 | MS.gene45170:CDS | 55.0% |
| ! | TTGGGAAAGGTCGACTCCCT+TGG | - | chr5.1:27228477-27228496 | MS.gene45170:CDS | 55.0% |
| !! | AGGTGCTGAAGAGTGCTGCA+AGG | - | chr5.1:27227948-27227967 | MS.gene45170:CDS | 55.0% |
| !! | CAACTTGCTGCAGTGTGTGC+AGG | - | chr5.1:27229263-27229282 | MS.gene45170:CDS | 55.0% |
| TTCAGATGGCTGGGCGTGCT+GGG | - | chr5.1:27227872-27227891 | MS.gene45170:CDS | 60.0% | |
| ! | GTGGTGGGAAAGCCCTTCGT+AGG | - | chr5.1:27228043-27228062 | MS.gene45170:CDS | 60.0% |
| CTTCAGATGGCTGGGCGTGC+TGG | - | chr5.1:27227871-27227890 | MS.gene45170:CDS | 65.0% | |
| GCTGGGCGTGCTGGGCGTAG+AGG | - | chr5.1:27227880-27227899 | MS.gene45170:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 27227790 | 27229676 | 27227790 | ID=MS.gene45170 |
| chr5.1 | mRNA | 27227790 | 27229676 | 27227790 | ID=MS.gene45170.t1;Parent=MS.gene45170 |
| chr5.1 | exon | 27227790 | 27229676 | 27227790 | ID=MS.gene45170.t1.exon1;Parent=MS.gene45170.t1 |
| chr5.1 | CDS | 27227790 | 27229676 | 27227790 | ID=cds.MS.gene45170.t1;Parent=MS.gene45170.t1 |
| Gene Sequence |
| Protein sequence |
