Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85253.t1 | XP_003597543.1 | 96.3 | 190 | 7 | 0 | 1 | 190 | 47 | 236 | 1.50E-92 | 349 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85253.t1 | Q9STF9 | 34.1 | 176 | 104 | 3 | 2 | 174 | 72 | 238 | 5.9e-18 | 92.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85253.t1 | G7IS14 | 96.3 | 190 | 7 | 0 | 1 | 190 | 47 | 236 | 1.0e-92 | 349.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene85253 | 0.837395 | 5.33E-57 | -1.69E-46 |
| MS.gene049150 | MS.gene85253 | 0.856337 | 3.44E-62 | -1.69E-46 |
| MS.gene049151 | MS.gene85253 | 0.824543 | 7.62E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene85253 | 0.862466 | 4.97E-64 | -1.69E-46 |
| MS.gene049170 | MS.gene85253 | 0.810322 | 1.22E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene85253 | 0.851216 | 1.03E-60 | -1.69E-46 |
| MS.gene049443 | MS.gene85253 | 0.801386 | 9.23E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene85253 | 0.832751 | 7.91E-56 | -1.69E-46 |
| MS.gene049910 | MS.gene85253 | 0.850408 | 1.73E-60 | -1.69E-46 |
| MS.gene049993 | MS.gene85253 | 0.818471 | 1.93E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene85253 | 0.849518 | 3.07E-60 | -1.69E-46 |
| MS.gene050227 | MS.gene85253 | 0.849188 | 3.79E-60 | -1.69E-46 |
| MS.gene050228 | MS.gene85253 | 0.850118 | 2.09E-60 | -1.69E-46 |
| MS.gene050301 | MS.gene85253 | 0.828622 | 8.12E-55 | -1.69E-46 |
| MS.gene050426 | MS.gene85253 | -0.867656 | 1.17E-65 | -1.69E-46 |
| MS.gene050464 | MS.gene85253 | 0.812672 | 3.77E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene85253 | 0.80983 | 1.56E-50 | -1.69E-46 |
| MS.gene050558 | MS.gene85253 | 0.809254 | 2.07E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene85253 | -0.845751 | 3.34E-59 | -1.69E-46 |
| MS.gene050642 | MS.gene85253 | 0.8794 | 1.29E-69 | -1.69E-46 |
| MS.gene050670 | MS.gene85253 | 0.833338 | 5.65E-56 | -1.69E-46 |
| MS.gene050820 | MS.gene85253 | 0.809442 | 1.89E-50 | -1.69E-46 |
| MS.gene050971 | MS.gene85253 | 0.811655 | 6.28E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene85253 | 0.844245 | 8.52E-59 | -1.69E-46 |
| MS.gene051568 | MS.gene85253 | 0.80086 | 1.18E-48 | -1.69E-46 |
| MS.gene051582 | MS.gene85253 | 0.81467 | 1.37E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene85253 | 0.893231 | 7.62E-75 | -1.69E-46 |
| MS.gene051983 | MS.gene85253 | 0.917742 | 3.66E-86 | -1.69E-46 |
| MS.gene052011 | MS.gene85253 | -0.877142 | 7.96E-69 | -1.69E-46 |
| MS.gene052077 | MS.gene85253 | 0.866758 | 2.26E-65 | -1.69E-46 |
| MS.gene052135 | MS.gene85253 | 0.802534 | 5.36E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene85253 | 0.852091 | 5.80E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene85253 | 0.850482 | 1.65E-60 | -1.69E-46 |
| MS.gene052255 | MS.gene85253 | 0.819333 | 1.23E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene85253 | 0.841915 | 3.56E-58 | -1.69E-46 |
| MS.gene052389 | MS.gene85253 | 0.822742 | 2.01E-53 | -1.69E-46 |
| MS.gene05316 | MS.gene85253 | 0.820278 | 7.46E-53 | -1.69E-46 |
| MS.gene053494 | MS.gene85253 | 0.822353 | 2.48E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene85253 | 0.82081 | 5.63E-53 | -1.69E-46 |
| MS.gene053577 | MS.gene85253 | 0.811975 | 5.35E-51 | -1.69E-46 |
| MS.gene053584 | MS.gene85253 | 0.802242 | 6.16E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene85253 | 0.870227 | 1.71E-66 | -1.69E-46 |
| MS.gene053928 | MS.gene85253 | 0.819697 | 1.01E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene85253 | 0.861894 | 7.44E-64 | -1.69E-46 |
| MS.gene054349 | MS.gene85253 | 0.843383 | 1.45E-58 | -1.69E-46 |
| MS.gene054556 | MS.gene85253 | 0.842921 | 1.92E-58 | -1.69E-46 |
| MS.gene054719 | MS.gene85253 | 0.828742 | 7.59E-55 | -1.69E-46 |
| MS.gene054918 | MS.gene85253 | 0.805828 | 1.11E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene85253 | 0.855671 | 5.39E-62 | -1.69E-46 |
| MS.gene054983 | MS.gene85253 | 0.823857 | 1.10E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene85253 | 0.80535 | 1.39E-49 | -1.69E-46 |
| MS.gene055367 | MS.gene85253 | 0.826179 | 3.13E-54 | -1.69E-46 |
| MS.gene055369 | MS.gene85253 | 0.809247 | 2.08E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene85253 | 0.807454 | 5.01E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene85253 | 0.873448 | 1.46E-67 | -1.69E-46 |
| MS.gene055604 | MS.gene85253 | 0.823673 | 1.22E-53 | -1.69E-46 |
| MS.gene055666 | MS.gene85253 | 0.813918 | 2.01E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene85253 | 0.84475 | 6.23E-59 | -1.69E-46 |
| MS.gene055859 | MS.gene85253 | 0.801266 | 9.77E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene85253 | 0.811134 | 8.15E-51 | -1.69E-46 |
| MS.gene056447 | MS.gene85253 | 0.830609 | 2.67E-55 | -1.69E-46 |
| MS.gene056612 | MS.gene85253 | 0.802569 | 5.27E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene85253 | 0.835889 | 1.29E-56 | -1.69E-46 |
| MS.gene056723 | MS.gene85253 | 0.860257 | 2.34E-63 | -1.69E-46 |
| MS.gene056899 | MS.gene85253 | -0.828273 | 9.86E-55 | -1.69E-46 |
| MS.gene056979 | MS.gene85253 | 0.911649 | 4.79E-83 | -1.69E-46 |
| MS.gene057121 | MS.gene85253 | 0.830717 | 2.51E-55 | -1.69E-46 |
| MS.gene057396 | MS.gene85253 | 0.850357 | 1.79E-60 | -1.69E-46 |
| MS.gene057448 | MS.gene85253 | 0.810071 | 1.38E-50 | -1.69E-46 |
| MS.gene057450 | MS.gene85253 | 0.805246 | 1.46E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene85253 | 0.827087 | 1.90E-54 | -1.69E-46 |
| MS.gene057750 | MS.gene85253 | 0.805189 | 1.51E-49 | -1.69E-46 |
| MS.gene057825 | MS.gene85253 | 0.802956 | 4.39E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene85253 | 0.840965 | 6.33E-58 | -1.69E-46 |
| MS.gene05811 | MS.gene85253 | 0.848335 | 6.55E-60 | -1.69E-46 |
| MS.gene058142 | MS.gene85253 | 0.890448 | 9.76E-74 | -1.69E-46 |
| MS.gene058276 | MS.gene85253 | 0.809447 | 1.88E-50 | -1.69E-46 |
| MS.gene058435 | MS.gene85253 | 0.81688 | 4.40E-52 | -1.69E-46 |
| MS.gene058700 | MS.gene85253 | 0.804817 | 1.80E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene85253 | 0.833443 | 5.32E-56 | -1.69E-46 |
| MS.gene058845 | MS.gene85253 | 0.800795 | 1.22E-48 | -1.69E-46 |
| MS.gene05886 | MS.gene85253 | 0.822422 | 2.39E-53 | -1.69E-46 |
| MS.gene058949 | MS.gene85253 | 0.818862 | 1.57E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene85253 | 0.855727 | 5.20E-62 | -1.69E-46 |
| MS.gene059082 | MS.gene85253 | 0.814769 | 1.30E-51 | -1.69E-46 |
| MS.gene059247 | MS.gene85253 | 0.859456 | 4.08E-63 | -1.69E-46 |
| MS.gene059285 | MS.gene85253 | 0.857192 | 1.93E-62 | -1.69E-46 |
| MS.gene059420 | MS.gene85253 | 0.857243 | 1.86E-62 | -1.69E-46 |
| MS.gene059462 | MS.gene85253 | 0.816023 | 6.85E-52 | -1.69E-46 |
| MS.gene059609 | MS.gene85253 | 0.827516 | 1.50E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene85253 | 0.872227 | 3.74E-67 | -1.69E-46 |
| MS.gene059894 | MS.gene85253 | 0.815566 | 8.66E-52 | -1.69E-46 |
| MS.gene059899 | MS.gene85253 | 0.820015 | 8.57E-53 | -1.69E-46 |
| MS.gene060247 | MS.gene85253 | 0.814736 | 1.32E-51 | -1.69E-46 |
| MS.gene061002 | MS.gene85253 | 0.821847 | 3.25E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene85253 | 0.832218 | 1.07E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene85253 | -0.840778 | 7.08E-58 | -1.69E-46 |
| MS.gene061154 | MS.gene85253 | 0.830736 | 2.48E-55 | -1.69E-46 |
| MS.gene061159 | MS.gene85253 | 0.848924 | 4.49E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85253.t1 | MTR_2g099410 | 96.316 | 190 | 7 | 0 | 1 | 190 | 47 | 236 | 1.06e-129 | 364 |
| MS.gene85253.t1 | MTR_4g064917 | 34.270 | 178 | 105 | 3 | 2 | 176 | 76 | 244 | 1.28e-24 | 97.4 |
| MS.gene85253.t1 | MTR_1g031110 | 27.160 | 162 | 109 | 2 | 3 | 161 | 36 | 191 | 8.74e-19 | 81.3 |
| MS.gene85253.t1 | MTR_3g079890 | 27.160 | 162 | 109 | 2 | 3 | 161 | 40 | 195 | 1.35e-18 | 80.9 |
| MS.gene85253.t1 | MTR_1g068960 | 34.444 | 90 | 59 | 0 | 79 | 168 | 485 | 574 | 1.61e-12 | 65.9 |
| MS.gene85253.t1 | MTR_3g114700 | 29.661 | 118 | 82 | 1 | 36 | 153 | 243 | 359 | 1.94e-11 | 62.4 |
| MS.gene85253.t1 | MTR_8g103480 | 28.947 | 114 | 77 | 2 | 43 | 156 | 49 | 158 | 1.95e-11 | 62.4 |
| MS.gene85253.t1 | MTR_7g103600 | 30.597 | 134 | 92 | 1 | 27 | 160 | 484 | 616 | 5.27e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85253.t1 | AT3G46870 | 34.091 | 176 | 104 | 3 | 2 | 174 | 72 | 238 | 6.56e-23 | 92.8 |
| MS.gene85253.t1 | AT3G46870 | 31.915 | 188 | 104 | 4 | 2 | 174 | 72 | 250 | 1.60e-19 | 84.0 |
| MS.gene85253.t1 | AT5G09315 | 28.571 | 203 | 120 | 4 | 2 | 185 | 54 | 250 | 1.18e-18 | 81.6 |
| MS.gene85253.t1 | AT1G62350 | 27.160 | 162 | 109 | 2 | 3 | 161 | 1 | 156 | 3.95e-14 | 68.2 |
| MS.gene85253.t1 | AT1G62350 | 27.160 | 162 | 109 | 2 | 3 | 161 | 57 | 212 | 1.29e-13 | 67.8 |
| MS.gene85253.t1 | AT3G04760 | 27.879 | 165 | 112 | 2 | 19 | 180 | 172 | 332 | 3.77e-12 | 64.7 |
| MS.gene85253.t1 | AT1G63330 | 28.378 | 148 | 95 | 4 | 34 | 178 | 284 | 423 | 7.28e-11 | 60.8 |
| MS.gene85253.t1 | AT1G63330 | 28.378 | 148 | 95 | 4 | 34 | 178 | 284 | 423 | 7.28e-11 | 60.8 |
| MS.gene85253.t1 | AT1G63330 | 28.378 | 148 | 95 | 4 | 34 | 178 | 284 | 423 | 7.28e-11 | 60.8 |
Find 43 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAACTTGAACGCTTTCTT+TGG | 0.235310 | 2.4:-4795443 | None:intergenic |
| ACTTTCTGAACAAATTTATC+AGG | 0.290581 | 2.4:-4796951 | None:intergenic |
| TACAGATCCATGAAGGCTTC+AGG | 0.306225 | 2.4:+4796816 | MS.gene85253:CDS |
| TCATTGAACAACCTCGTATC+TGG | 0.321501 | 2.4:-4796741 | None:intergenic |
| CAAACACCCTGAAGCCTTCA+TGG | 0.358156 | 2.4:-4796823 | None:intergenic |
| ATTAGGAATCTAATGAATAA+TGG | 0.372286 | 2.4:+4796873 | MS.gene85253:CDS |
| TGACATTCACGATACTGATT+AGG | 0.383930 | 2.4:+4796856 | MS.gene85253:CDS |
| TTCTGACACTATATTGTTGC+TGG | 0.386533 | 2.4:+4796653 | MS.gene85253:CDS |
| TTCAATCAAGTTGTGGAAAA+GGG | 0.393035 | 2.4:+4796711 | MS.gene85253:CDS |
| GAAGGCTTCAGGGTGTTTGC+CGG | 0.397835 | 2.4:+4796827 | MS.gene85253:CDS |
| GGTTGTTCAATGAGATGATC+GGG | 0.409297 | 2.4:+4796751 | MS.gene85253:CDS |
| GCCAAGACAATTAAAACATC+AGG | 0.410998 | 2.4:-4795544 | None:intergenic |
| GTTCAATCAAGTTGTGGAAA+AGG | 0.412536 | 2.4:+4796710 | MS.gene85253:CDS |
| AGGAAGCTGGGTATGATAAA+TGG | 0.414897 | 2.4:+4796616 | MS.gene85253:CDS |
| TAAACTTGTAGTGTCTTGTA+TGG | 0.432276 | 2.4:+4797095 | MS.gene85253:intron |
| TTATTTGCAAGTTGGTAATA+CGG | 0.445470 | 2.4:+4796776 | MS.gene85253:CDS |
| TTCTCAAGTCTAAATTGCTT+AGG | 0.453872 | 2.4:+4795512 | MS.gene85253:CDS |
| GCAATTTAGACTTGAGAACT+TGG | 0.462867 | 2.4:-4795507 | None:intergenic |
| GAAAACTCACATGTTTCAGC+TGG | 0.472944 | 2.4:-4796974 | None:intergenic |
| ACAGATCCATGAAGGCTTCA+GGG | 0.478380 | 2.4:+4796817 | MS.gene85253:CDS |
| ATCATCAGTGATGAGGAAGC+TGG | 0.489732 | 2.4:+4796603 | MS.gene85253:CDS |
| ATCGTGAATGTCAATGAATC+CGG | 0.495421 | 2.4:-4796846 | None:intergenic |
| ATCGGGGTTTATTTGCAAGT+TGG | 0.501108 | 2.4:+4796768 | MS.gene85253:CDS |
| GAATAATGGAGAACATGAAC+TGG | 0.504471 | 2.4:+4796887 | MS.gene85253:CDS |
| GTCTTGTATGGGAAGAGTAA+TGG | 0.515604 | 2.4:+4797107 | MS.gene85253:CDS |
| CCTTGAGAGATAAATGGAGT+TGG | 0.528634 | 2.4:-4795585 | None:intergenic |
| AGGTTGTTCAATGAGATGAT+CGG | 0.544532 | 2.4:+4796750 | MS.gene85253:CDS |
| TCTGACACTATATTGTTGCT+GGG | 0.554494 | 2.4:+4796654 | MS.gene85253:CDS |
| CCAACTCCATTTATCTCTCA+AGG | 0.557133 | 2.4:+4795585 | MS.gene85253:CDS |
| TGGTAATACGGAGAAGGCGA+TGG | 0.560110 | 2.4:+4796788 | MS.gene85253:CDS |
| GCAAGTTGGTAATACGGAGA+AGG | 0.574234 | 2.4:+4796782 | MS.gene85253:CDS |
| CGAGTTTATCATCAGTGATG+AGG | 0.580481 | 2.4:+4796596 | MS.gene85253:CDS |
| TCATCAGTGATGAGGAAGCT+GGG | 0.584407 | 2.4:+4796604 | MS.gene85253:CDS |
| AGAGATGTTCAATCAAGTTG+TGG | 0.585094 | 2.4:+4796704 | MS.gene85253:CDS |
| GGAGGTTTACAGATCCATGA+AGG | 0.589588 | 2.4:+4796809 | MS.gene85253:CDS |
| TCAATCAAGTTGTGGAAAAG+GGG | 0.591104 | 2.4:+4796712 | MS.gene85253:CDS |
| AAAGAACAAGATGATTGAGA+TGG | 0.594568 | 2.4:+4796677 | MS.gene85253:CDS |
| GAACAAGATGATTGAGATGG+CGG | 0.602226 | 2.4:+4796680 | MS.gene85253:CDS |
| TAATACGGAGAAGGCGATGG+AGG | 0.641911 | 2.4:+4796791 | MS.gene85253:CDS |
| AAACTTGTAGTGTCTTGTAT+GGG | 0.642469 | 2.4:+4797096 | MS.gene85253:intron |
| AATATAGTGTCAGAATACAA+TGG | 0.656425 | 2.4:-4796645 | None:intergenic |
| GTTGTTCAATGAGATGATCG+GGG | 0.665655 | 2.4:+4796752 | MS.gene85253:CDS |
| AGGGGTTGAAACCAGATACG+AGG | 0.767064 | 2.4:+4796730 | MS.gene85253:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACTTATATGAAAATTATA+TGG | + | chr2.4:4795822-4795841 | MS.gene85253:intron | 10.0% |
| !! | ATAAGATAATAGTTTGATAT+TGG | - | chr2.4:4795940-4795959 | None:intergenic | 15.0% |
| !! | ATTAGGAATCTAATGAATAA+TGG | + | chr2.4:4796873-4796892 | MS.gene85253:CDS | 20.0% |
| !!! | ATGTGAGTTTTCAAATTTTA+TGG | + | chr2.4:4796985-4797004 | MS.gene85253:intron | 20.0% |
| !!! | GATATCATTTTCTATAAGAA+CGG | - | chr2.4:4796166-4796185 | None:intergenic | 20.0% |
| !!! | GCTTTTTTCATAAATTATTC+TGG | + | chr2.4:4795969-4795988 | MS.gene85253:intron | 20.0% |
| !!! | TGATTTTTTAAGTGACATTT+TGG | + | chr2.4:4797042-4797061 | MS.gene85253:intron | 20.0% |
| ! | AATAATTTGATCGTAGTTGA+AGG | + | chr2.4:4796264-4796283 | MS.gene85253:intron | 25.0% |
| ! | AATATAGTGTCAGAATACAA+TGG | - | chr2.4:4796648-4796667 | None:intergenic | 25.0% |
| ! | ACTTTCTGAACAAATTTATC+AGG | - | chr2.4:4796954-4796973 | None:intergenic | 25.0% |
| ! | GATTAAAGGTCTTAAGAATT+AGG | + | chr2.4:4796326-4796345 | MS.gene85253:intron | 25.0% |
| ! | GCTAGAAAATTATTTCATCT+AGG | + | chr2.4:4796219-4796238 | MS.gene85253:intron | 25.0% |
| ! | TAGTTAGAATTATTAGCTAC+TGG | - | chr2.4:4796518-4796537 | None:intergenic | 25.0% |
| !! | GCATTTGATAATTGTAACAT+AGG | + | chr2.4:4796569-4796588 | MS.gene85253:intron | 25.0% |
| !! | TTTTTACCTTGAGAGATAAA+TGG | - | chr2.4:4795594-4795613 | None:intergenic | 25.0% |
| !!! | ACTGTTTTCTCTAGTTTTTT+TGG | + | chr2.4:4796038-4796057 | MS.gene85253:intron | 25.0% |
| !!! | CTATTTTCTCAAAGTATTAC+CGG | + | chr2.4:4796406-4796425 | MS.gene85253:intron | 25.0% |
| !!! | TTATTTGCAAGTTGGTAATA+CGG | + | chr2.4:4796776-4796795 | MS.gene85253:CDS | 25.0% |
| !!! | TTGTTTCTAATAAGCTATCT+AGG | + | chr2.4:4795774-4795793 | MS.gene85253:intron | 25.0% |
| AAACTTGTAGTGTCTTGTAT+GGG | + | chr2.4:4797096-4797115 | MS.gene85253:intron | 30.0% | |
| AAAGAACAAGATGATTGAGA+TGG | + | chr2.4:4796677-4796696 | MS.gene85253:CDS | 30.0% | |
| AATAACTTGAACGCTTTCTT+TGG | - | chr2.4:4795446-4795465 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACTACTCA+CGG | + | chr2.4:4796004-4796023 | MS.gene85253:intron | 30.0% | |
| ACAAGTTGCAAACAACTTAT+AGG | - | chr2.4:4795758-4795777 | None:intergenic | 30.0% | |
| AGTTAGTCACTAGTGTAATT+TGG | - | chr2.4:4796121-4796140 | None:intergenic | 30.0% | |
| ATCACAATTAAAACCCTGTT+TGG | + | chr2.4:4795613-4795632 | MS.gene85253:intron | 30.0% | |
| ATTAAAACCCTGTTTGGTTA+AGG | + | chr2.4:4795619-4795638 | MS.gene85253:intron | 30.0% | |
| CAACAGAACTTCTAATTAGT+TGG | - | chr2.4:4796188-4796207 | None:intergenic | 30.0% | |
| GTCTTAAGAATTAGGATTGA+AGG | + | chr2.4:4796334-4796353 | MS.gene85253:intron | 30.0% | |
| GTTAGTCACTAGTGTAATTT+GGG | - | chr2.4:4796120-4796139 | None:intergenic | 30.0% | |
| TAAACTTGTAGTGTCTTGTA+TGG | + | chr2.4:4797095-4797114 | MS.gene85253:intron | 30.0% | |
| TTCTAATAAGCTATCTAGGA+CGG | + | chr2.4:4795778-4795797 | MS.gene85253:intron | 30.0% | |
| TTCTCAAGTCTAAATTGCTT+AGG | + | chr2.4:4795512-4795531 | MS.gene85253:CDS | 30.0% | |
| ! | AACTTGGTTGAGTTTTTCTT+CGG | - | chr2.4:4795494-4795513 | None:intergenic | 30.0% |
| ! | ACCTTTAATCTTTCAAGTGT+CGG | - | chr2.4:4796316-4796335 | None:intergenic | 30.0% |
| ! | CGGTAATACTTTGAGAAAAT+AGG | - | chr2.4:4796408-4796427 | None:intergenic | 30.0% |
| ! | TTCAATCAAGTTGTGGAAAA+GGG | + | chr2.4:4796711-4796730 | MS.gene85253:CDS | 30.0% |
| !! | AGTTTGATATTGGCTTTGTT+TGG | - | chr2.4:4795930-4795949 | None:intergenic | 30.0% |
| !! | ATATTGGCTTTGTTTGGAAT+TGG | - | chr2.4:4795924-4795943 | None:intergenic | 30.0% |
| ACCGACACTTGAAAGATTAA+AGG | + | chr2.4:4796312-4796331 | MS.gene85253:intron | 35.0% | |
| AGGTTGTTCAATGAGATGAT+CGG | + | chr2.4:4796750-4796769 | MS.gene85253:CDS | 35.0% | |
| ATCGTGAATGTCAATGAATC+CGG | - | chr2.4:4796849-4796868 | None:intergenic | 35.0% | |
| CAAGTACGTCACAAACTATA+AGG | - | chr2.4:4797075-4797094 | None:intergenic | 35.0% | |
| GAAGGATATTAACCTGTATG+TGG | + | chr2.4:4796282-4796301 | MS.gene85253:intron | 35.0% | |
| GAGAAAATAGGAATGATCGA+AGG | - | chr2.4:4796396-4796415 | None:intergenic | 35.0% | |
| GCAATTTAGACTTGAGAACT+TGG | - | chr2.4:4795510-4795529 | None:intergenic | 35.0% | |
| GCCAAGACAATTAAAACATC+AGG | - | chr2.4:4795547-4795566 | None:intergenic | 35.0% | |
| GCTTAAACCTTAACCAAACA+GGG | - | chr2.4:4795629-4795648 | None:intergenic | 35.0% | |
| TATTACCGGTGTTTATGTGT+GGG | + | chr2.4:4796420-4796439 | MS.gene85253:intron | 35.0% | |
| TCTGACACTATATTGTTGCT+GGG | + | chr2.4:4796654-4796673 | MS.gene85253:CDS | 35.0% | |
| TGCTTAAACCTTAACCAAAC+AGG | - | chr2.4:4795630-4795649 | None:intergenic | 35.0% | |
| TTCTGACACTATATTGTTGC+TGG | + | chr2.4:4796653-4796672 | MS.gene85253:CDS | 35.0% | |
| ! | AGAGATGTTCAATCAAGTTG+TGG | + | chr2.4:4796704-4796723 | MS.gene85253:CDS | 35.0% |
| ! | ATTAGGATTGAAGGTGTGTT+TGG | + | chr2.4:4796343-4796362 | MS.gene85253:intron | 35.0% |
| ! | GAATAATGGAGAACATGAAC+TGG | + | chr2.4:4796887-4796906 | MS.gene85253:CDS | 35.0% |
| ! | GTTCAATCAAGTTGTGGAAA+AGG | + | chr2.4:4796710-4796729 | MS.gene85253:CDS | 35.0% |
| ! | TCAATCAAGTTGTGGAAAAG+GGG | + | chr2.4:4796712-4796731 | MS.gene85253:CDS | 35.0% |
| ! | TGACATTCACGATACTGATT+AGG | + | chr2.4:4796856-4796875 | MS.gene85253:CDS | 35.0% |
| !!! | GCCTGATGTTTTAATTGTCT+TGG | + | chr2.4:4795543-4795562 | MS.gene85253:CDS | 35.0% |
| AGGAAGCTGGGTATGATAAA+TGG | + | chr2.4:4796616-4796635 | MS.gene85253:CDS | 40.0% | |
| ATCGGGGTTTATTTGCAAGT+TGG | + | chr2.4:4796768-4796787 | MS.gene85253:CDS | 40.0% | |
| CCAACTCCATTTATCTCTCA+AGG | + | chr2.4:4795585-4795604 | MS.gene85253:CDS | 40.0% | |
| CCTTGAGAGATAAATGGAGT+TGG | - | chr2.4:4795588-4795607 | None:intergenic | 40.0% | |
| CGAGTTTATCATCAGTGATG+AGG | + | chr2.4:4796596-4796615 | MS.gene85253:CDS | 40.0% | |
| GAAAACTCACATGTTTCAGC+TGG | - | chr2.4:4796977-4796996 | None:intergenic | 40.0% | |
| GAACAAGATGATTGAGATGG+CGG | + | chr2.4:4796680-4796699 | MS.gene85253:CDS | 40.0% | |
| GGTTGTTCAATGAGATGATC+GGG | + | chr2.4:4796751-4796770 | MS.gene85253:CDS | 40.0% | |
| GTATTACCGGTGTTTATGTG+TGG | + | chr2.4:4796419-4796438 | MS.gene85253:intron | 40.0% | |
| GTTGTTCAATGAGATGATCG+GGG | + | chr2.4:4796752-4796771 | MS.gene85253:CDS | 40.0% | |
| TATTAACCTGTATGTGGCAG+TGG | + | chr2.4:4796288-4796307 | MS.gene85253:intron | 40.0% | |
| TCATTGAACAACCTCGTATC+TGG | - | chr2.4:4796744-4796763 | None:intergenic | 40.0% | |
| TGATACCCACACATAAACAC+CGG | - | chr2.4:4796428-4796447 | None:intergenic | 40.0% | |
| ACAGATCCATGAAGGCTTCA+GGG | + | chr2.4:4796817-4796836 | MS.gene85253:CDS | 45.0% | |
| ATCATCAGTGATGAGGAAGC+TGG | + | chr2.4:4796603-4796622 | MS.gene85253:CDS | 45.0% | |
| GGAGGTTTACAGATCCATGA+AGG | + | chr2.4:4796809-4796828 | MS.gene85253:CDS | 45.0% | |
| TACAGATCCATGAAGGCTTC+AGG | + | chr2.4:4796816-4796835 | MS.gene85253:CDS | 45.0% | |
| TCATCAGTGATGAGGAAGCT+GGG | + | chr2.4:4796604-4796623 | MS.gene85253:CDS | 45.0% | |
| !! | GCAAGTTGGTAATACGGAGA+AGG | + | chr2.4:4796782-4796801 | MS.gene85253:CDS | 45.0% |
| !! | AAAATTAAAATGAAAAAATA+AGG | - | chr2.4:4796549-4796568 | None:intergenic | 5.0% |
| AGGGGTTGAAACCAGATACG+AGG | + | chr2.4:4796730-4796749 | MS.gene85253:CDS | 50.0% | |
| CAAACACCCTGAAGCCTTCA+TGG | - | chr2.4:4796826-4796845 | None:intergenic | 50.0% | |
| TAATACGGAGAAGGCGATGG+AGG | + | chr2.4:4796791-4796810 | MS.gene85253:CDS | 50.0% | |
| TGGTAATACGGAGAAGGCGA+TGG | + | chr2.4:4796788-4796807 | MS.gene85253:CDS | 50.0% | |
| TCGGTACCACTGCCACATAC+AGG | - | chr2.4:4796297-4796316 | None:intergenic | 55.0% | |
| ! | GAAGGCTTCAGGGTGTTTGC+CGG | + | chr2.4:4796827-4796846 | MS.gene85253:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 4795433 | 4797126 | 4795433 | ID=MS.gene85253 |
| chr2.4 | mRNA | 4795433 | 4797126 | 4795433 | ID=MS.gene85253.t1;Parent=MS.gene85253 |
| chr2.4 | exon | 4795433 | 4795606 | 4795433 | ID=MS.gene85253.t1.exon1;Parent=MS.gene85253.t1 |
| chr2.4 | CDS | 4795433 | 4795606 | 4795433 | ID=cds.MS.gene85253.t1;Parent=MS.gene85253.t1 |
| chr2.4 | exon | 4796591 | 4796986 | 4796591 | ID=MS.gene85253.t1.exon2;Parent=MS.gene85253.t1 |
| chr2.4 | CDS | 4796591 | 4796986 | 4796591 | ID=cds.MS.gene85253.t1;Parent=MS.gene85253.t1 |
| chr2.4 | exon | 4797106 | 4797126 | 4797106 | ID=MS.gene85253.t1.exon3;Parent=MS.gene85253.t1 |
| chr2.4 | CDS | 4797106 | 4797126 | 4797106 | ID=cds.MS.gene85253.t1;Parent=MS.gene85253.t1 |
| Gene Sequence |
| Protein sequence |
