AlfalfaGEDB | MS.gene68819

M. sativa cultivar XinJiangDaYe / MS.gene68819

KEGG: -
GO: -
PFAM: PF16913.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68819.t1	GAU45956.1	93.2	146	9	1	1	145	7	152	1.40E-68	268.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68819.t1	Q9SY29	61.9	134	46	2	1	133	224	353	3.2e-40	166.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68819.t1	A0A2Z6NQR6	93.2	146	9	1	1	145	7	152	1.0e-68	268.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene68819	0.811397	7.15E-51	-1.69E-46
MS.gene049153	MS.gene68819	0.802039	6.78E-49	-1.69E-46
MS.gene049346	MS.gene68819	0.821697	3.52E-53	-1.69E-46
MS.gene049378	MS.gene68819	0.806572	7.71E-50	-1.69E-46
MS.gene049443	MS.gene68819	0.804889	1.74E-49	-1.69E-46
MS.gene049758	MS.gene68819	0.805321	1.41E-49	-1.69E-46
MS.gene049910	MS.gene68819	0.825578	4.34E-54	-1.69E-46
MS.gene049915	MS.gene68819	0.855395	6.50E-62	-1.69E-46
MS.gene050168	MS.gene68819	0.80747	4.98E-50	-1.69E-46
MS.gene050226	MS.gene68819	0.838679	2.49E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68819.t1	MTR_2g437590	94.558	147	8	0	1	147	268	414	1.42e-98	289
MS.gene68819.t1	MTR_2g437580	83.688	141	22	1	1	141	249	388	6.66e-80	241
MS.gene68819.t1	MTR_3g099740	37.903	124	76	1	1	124	232	354	6.22e-21	87.4
MS.gene68819.t1	MTR_5g065080	34.507	142	84	2	1	142	230	362	8.29e-21	87.0
MS.gene68819.t1	MTR_3g099750	35.593	118	75	1	7	124	237	353	7.50e-18	79.0
MS.gene68819.t1	MTR_7g080750	29.323	133	90	2	4	133	220	351	2.01e-17	77.4
MS.gene68819.t1	MTR_2g015470	31.818	132	84	2	7	138	252	377	5.30e-16	73.9
MS.gene68819.t1	MTR_6g082540	33.582	134	81	5	4	135	42	169	5.30e-15	68.6
MS.gene68819.t1	MTR_3g058660	34.328	134	80	5	4	135	224	351	1.22e-13	67.0
MS.gene68819.t1	MTR_8g024620	27.434	113	81	1	1	113	250	361	3.85e-11	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68819.t1	AT1G30840	65.789	114	38	1	1	113	224	337	9.32e-47	155
MS.gene68819.t1	AT1G30840	65.789	114	38	1	1	113	224	337	9.32e-47	155
MS.gene68819.t1	AT1G28230	32.877	146	94	1	1	146	215	356	2.16e-19	83.2
MS.gene68819.t1	AT1G28220	36.000	125	78	2	1	125	209	331	8.37e-19	81.3
MS.gene68819.t1	AT2G33750	36.290	124	76	3	1	124	211	331	4.99e-16	73.6
MS.gene68819.t1	AT1G44750	31.092	119	81	1	4	122	171	288	1.24e-15	72.4
MS.gene68819.t1	AT1G44750	31.092	119	81	1	4	122	171	288	1.24e-15	72.4
MS.gene68819.t1	AT1G44750	31.092	119	81	1	4	122	171	288	1.24e-15	72.4
MS.gene68819.t1	AT1G44750	31.092	119	81	1	4	122	171	288	1.24e-15	72.4
MS.gene68819.t1	AT1G44750	31.092	119	81	1	4	122	171	288	1.24e-15	72.4

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Find 0 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTATAGAGATGAATTTGG+TGG	-	15233:13295-13314	MS.gene68819:CDS	30.0%
TGGTATGTATGTTAAGATGT+TGG	-	15233:13372-13391	MS.gene68819:CDS	30.0%
TTAAGATGTTGGAAGAGAAA+GGG	-	15233:13383-13402	MS.gene68819:CDS	30.0%
TTCTTGACATCTTCATTAAC+TGG	-	15233:13220-13239	MS.gene68819:CDS	30.0%
TTGTTGTCTATGAATGTGTT+GGG	-	15233:13262-13281	MS.gene68819:CDS	30.0%
AAGTAGAGTTTATTGGGTGA+CGG	-	15233:13141-13160	MS.gene68819:CDS	35.0%
AGAAATGAAGAGAGAAAGTG+AGG	-	15233:13102-13121	MS.gene68819:CDS	35.0%
GTTAAGATGTTGGAAGAGAA+AGG	-	15233:13382-13401	MS.gene68819:CDS	35.0%
TGACATCTTCATTAACTGGT+GGG	-	15233:13224-13243	MS.gene68819:CDS	35.0%
TTGACATCTTCATTAACTGG+TGG	-	15233:13223-13242	MS.gene68819:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
15233	gene	13037	13480	13037	ID=MS.gene68819
15233	mRNA	13037	13480	13037	ID=MS.gene68819.t1;Parent=MS.gene68819
15233	exon	13037	13480	13037	ID=MS.gene68819.t1.exon1;Parent=MS.gene68819.t1
15233	CDS	13037	13480	13037	ID=cds.MS.gene68819.t1;Parent=MS.gene68819.t1

Gene Sequence

>MS.gene68819

CTTATAATGGAGATTGCAGCGACGGTTTTAGCGACAGTGGGAATGGCGTGGGACGGCGGATTTAAAGAAATGAAGAGAGAAAGTGAGGAGGTTTTTGATAAGGAAAGTAGAGTTTATTGGGTGACGGTTATGGCGAATGTCGTGACGTGGCAGTTTTGTTTTATGGGGACTGCTGGGATGGTTTTCTTGACATCTTCATTAACTGGTGGGATTTGTATGACAGCTTTGTTGTCTATGAATGTGTTGGGTGGTGTTGTTGTTTATAGAGATGAATTTGGTGGTTTGAAAGCTGTTTCAACTGTTTTGTGTATGTGGGGATTTTGTTCTTATGTTTATGGTATGTATGTTAAGATGTTGGAAGAGAAAGGGAAGATCGTTAAGGAAAGGAATGATTCTTCCATGGAGTTGAGTACTATGAGAAGAAGTGGAGGTGCAGCTGGTTGA

Protein sequence

>MS.gene68819.t1

LIMEIAATVLATVGMAWDGGFKEMKRESEEVFDKESRVYWVTVMANVVTWQFCFMGTAGMVFLTSSLTGGICMTALLSMNVLGGVVVYRDEFGGLKAVSTVLCMWGFCSYVYGMYVKMLEEKGKIVKERNDSSMELSTMRRSGGAAG