Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72557.t1 | XP_013455414.1 | 95.7 | 258 | 11 | 0 | 1 | 258 | 184 | 441 | 7.20E-140 | 506.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72557.t1 | Q9FGN3 | 65.1 | 258 | 90 | 0 | 1 | 258 | 169 | 426 | 4.6e-95 | 349.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72557.t1 | A0A072UUB0 | 95.7 | 258 | 11 | 0 | 1 | 258 | 184 | 441 | 5.2e-140 | 506.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene72557 | 0.830462 | 2.90E-55 | -1.69E-46 |
| MS.gene049435 | MS.gene72557 | 0.809085 | 2.25E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene72557 | 0.800854 | 1.19E-48 | -1.69E-46 |
| MS.gene050226 | MS.gene72557 | 0.816637 | 4.99E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene72557 | 0.804716 | 1.89E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene72557 | 0.809458 | 1.87E-50 | -1.69E-46 |
| MS.gene050376 | MS.gene72557 | 0.815102 | 1.10E-51 | -1.69E-46 |
| MS.gene050438 | MS.gene72557 | 0.821348 | 4.24E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene72557 | 0.819816 | 9.52E-53 | -1.69E-46 |
| MS.gene050586 | MS.gene72557 | 0.813654 | 2.29E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene72557 | -0.805865 | 1.09E-49 | -1.69E-46 |
| MS.gene050680 | MS.gene72557 | 0.806576 | 7.69E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene72557 | 0.81297 | 3.24E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene72557 | 0.810877 | 9.26E-51 | -1.69E-46 |
| MS.gene050724 | MS.gene72557 | 0.829866 | 4.05E-55 | -1.69E-46 |
| MS.gene050762 | MS.gene72557 | 0.80398 | 2.69E-49 | -1.69E-46 |
| MS.gene050763 | MS.gene72557 | 0.80513 | 1.55E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene72557 | 0.813475 | 2.51E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene72557 | 0.813912 | 2.01E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene72557 | 0.819726 | 9.98E-53 | -1.69E-46 |
| MS.gene050959 | MS.gene72557 | 0.803995 | 2.67E-49 | -1.69E-46 |
| MS.gene051210 | MS.gene72557 | 0.808591 | 2.87E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene72557 | 0.813286 | 2.76E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene72557 | 0.816003 | 6.92E-52 | -1.69E-46 |
| MS.gene052020 | MS.gene72557 | 0.842363 | 2.71E-58 | -1.69E-46 |
| MS.gene052323 | MS.gene72557 | 0.806705 | 7.23E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene72557 | 0.806024 | 1.01E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene72557 | 0.830563 | 2.74E-55 | -1.69E-46 |
| MS.gene052860 | MS.gene72557 | 0.80582 | 1.11E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene72557 | 0.838014 | 3.70E-57 | -1.69E-46 |
| MS.gene053221 | MS.gene72557 | 0.822179 | 2.72E-53 | -1.69E-46 |
| MS.gene053584 | MS.gene72557 | 0.80575 | 1.15E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene72557 | 0.814242 | 1.70E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene72557 | 0.801281 | 9.70E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene72557 | 0.802831 | 4.66E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene72557 | 0.817712 | 2.86E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene72557 | 0.804894 | 1.73E-49 | -1.69E-46 |
| MS.gene054833 | MS.gene72557 | 0.817579 | 3.06E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene72557 | 0.810941 | 8.97E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene72557 | 0.80921 | 2.12E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene72557 | 0.820566 | 6.41E-53 | -1.69E-46 |
| MS.gene055608 | MS.gene72557 | 0.822696 | 2.06E-53 | -1.69E-46 |
| MS.gene056875 | MS.gene72557 | 0.805461 | 1.32E-49 | -1.69E-46 |
| MS.gene057200 | MS.gene72557 | 0.822756 | 2.00E-53 | -1.69E-46 |
| MS.gene057750 | MS.gene72557 | 0.820584 | 6.35E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene72557 | 0.800563 | 1.36E-48 | -1.69E-46 |
| MS.gene058168 | MS.gene72557 | 0.811796 | 5.85E-51 | -1.69E-46 |
| MS.gene058851 | MS.gene72557 | 0.805225 | 1.48E-49 | -1.69E-46 |
| MS.gene059124 | MS.gene72557 | 0.810971 | 8.84E-51 | -1.69E-46 |
| MS.gene059128 | MS.gene72557 | 0.818548 | 1.85E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene72557 | -0.804508 | 2.09E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene72557 | 0.819518 | 1.11E-52 | -1.69E-46 |
| MS.gene060404 | MS.gene72557 | 0.803917 | 2.77E-49 | -1.69E-46 |
| MS.gene060480 | MS.gene72557 | 0.817344 | 3.46E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene72557 | 0.82387 | 1.10E-53 | -1.69E-46 |
| MS.gene060685 | MS.gene72557 | 0.821785 | 3.36E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene72557 | 0.828586 | 8.28E-55 | -1.69E-46 |
| MS.gene060803 | MS.gene72557 | 0.830784 | 2.42E-55 | -1.69E-46 |
| MS.gene060998 | MS.gene72557 | 0.805051 | 1.61E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72557.t1 | MTR_4g036815 | 99.225 | 258 | 2 | 0 | 1 | 258 | 184 | 441 | 0.0 | 521 |
| MS.gene72557.t1 | MTR_3g408430 | 73.256 | 258 | 69 | 0 | 1 | 258 | 169 | 426 | 3.59e-138 | 397 |
| MS.gene72557.t1 | MTR_2g021030 | 32.558 | 258 | 160 | 9 | 8 | 257 | 129 | 380 | 1.45e-20 | 90.5 |
| MS.gene72557.t1 | MTR_2g021030 | 29.362 | 235 | 126 | 7 | 53 | 256 | 128 | 353 | 6.51e-11 | 62.4 |
| MS.gene72557.t1 | MTR_2g021030 | 28.774 | 212 | 111 | 9 | 6 | 209 | 256 | 435 | 9.35e-11 | 62.0 |
| MS.gene72557.t1 | MTR_2g021030 | 32.558 | 258 | 160 | 9 | 8 | 257 | 129 | 380 | 1.97e-20 | 90.5 |
| MS.gene72557.t1 | MTR_2g021030 | 27.848 | 237 | 130 | 10 | 6 | 233 | 256 | 460 | 1.08e-11 | 64.7 |
| MS.gene72557.t1 | MTR_2g021030 | 29.362 | 235 | 126 | 7 | 53 | 256 | 128 | 353 | 6.64e-11 | 62.4 |
| MS.gene72557.t1 | MTR_4g013255 | 27.753 | 227 | 152 | 6 | 33 | 254 | 324 | 543 | 6.17e-13 | 68.6 |
| MS.gene72557.t1 | MTR_7g112570 | 29.032 | 248 | 155 | 9 | 6 | 242 | 401 | 638 | 4.76e-12 | 65.9 |
| MS.gene72557.t1 | MTR_1g114610 | 28.646 | 192 | 109 | 6 | 69 | 257 | 81 | 247 | 1.91e-11 | 63.9 |
| MS.gene72557.t1 | MTR_4g114640 | 26.199 | 271 | 165 | 10 | 5 | 241 | 218 | 487 | 2.11e-11 | 63.9 |
| MS.gene72557.t1 | MTR_7g112570 | 27.686 | 242 | 133 | 8 | 13 | 244 | 329 | 538 | 6.68e-11 | 62.4 |
| MS.gene72557.t1 | MTR_7g112570 | 27.686 | 242 | 133 | 8 | 13 | 244 | 329 | 538 | 7.34e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72557.t1 | AT5G07670 | 68.340 | 259 | 79 | 2 | 1 | 258 | 167 | 423 | 5.26e-119 | 348 |
| MS.gene72557.t1 | AT5G51380 | 65.116 | 258 | 90 | 0 | 1 | 258 | 169 | 426 | 1.67e-114 | 337 |
| MS.gene72557.t1 | AT5G51370 | 62.403 | 258 | 97 | 0 | 1 | 258 | 133 | 390 | 4.19e-109 | 322 |
| MS.gene72557.t1 | AT5G51370 | 61.435 | 223 | 86 | 0 | 1 | 223 | 133 | 355 | 3.29e-92 | 276 |
| MS.gene72557.t1 | AT4G15475 | 28.516 | 256 | 171 | 7 | 6 | 254 | 127 | 377 | 1.55e-18 | 85.1 |
| MS.gene72557.t1 | AT4G15475 | 26.639 | 244 | 146 | 7 | 6 | 244 | 256 | 471 | 6.78e-14 | 71.6 |
| MS.gene72557.t1 | AT2G25490 | 25.362 | 276 | 172 | 9 | 6 | 247 | 216 | 491 | 9.42e-14 | 70.9 |
| MS.gene72557.t1 | AT5G23340 | 26.337 | 243 | 170 | 7 | 20 | 256 | 76 | 315 | 1.20e-11 | 64.3 |
Find 61 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGGACTTGATGAGTATT+TGG | 0.154013 | 4.1:-62162328 | MS.gene72557:CDS |
| GGTTCGGTTGTTTCGGATAT+TGG | 0.212698 | 4.1:-62162573 | MS.gene72557:CDS |
| ACTTGAACCCTTCTCAAATT+AGG | 0.239059 | 4.1:+62162756 | None:intergenic |
| TGCTAGGGAGATTATTATTC+AGG | 0.242284 | 4.1:-62162214 | MS.gene72557:CDS |
| CCTGTTGAGGTTATTGATAA+TGG | 0.245467 | 4.1:-62162804 | MS.gene72557:CDS |
| GTAAAATTGCTTTACTTAGA+AGG | 0.276039 | 4.1:-62161411 | MS.gene72557:CDS |
| TTTGATGGGATTAAGGCTAT+TGG | 0.316937 | 4.1:-62162483 | MS.gene72557:CDS |
| CTGTTGAGGTTATTGATAAT+GGG | 0.336909 | 4.1:-62162803 | MS.gene72557:CDS |
| TCGGCTTTGCAACTGTTTGC+AGG | 0.351431 | 4.1:-62162164 | MS.gene72557:intron |
| CCGGGACTTGATGAGTATTT+GGG | 0.353254 | 4.1:-62162327 | MS.gene72557:CDS |
| GTGTTCTACATTGCAGGAAT+TGG | 0.354359 | 4.1:-62162691 | MS.gene72557:CDS |
| TGAAATGGGTTTGTTAAGTT+TGG | 0.356585 | 4.1:-62162721 | MS.gene72557:CDS |
| GGGTTAGTTGCTTTAGCTAA+TGG | 0.358130 | 4.1:-62162783 | MS.gene72557:CDS |
| AGATTATTATTCAGGATTGC+TGG | 0.374839 | 4.1:-62162206 | MS.gene72557:CDS |
| GATTGCTGGGGATTTGATAA+TGG | 0.380312 | 4.1:-62162192 | MS.gene72557:CDS |
| TTGTGAAGCTTGAGCTTTGT+GGG | 0.380521 | 4.1:-62162518 | MS.gene72557:CDS |
| TAAGAAGATTGATTTGAATC+CGG | 0.381569 | 4.1:-62162346 | MS.gene72557:CDS |
| TTGAGAAGGGTTCAAGTGAT+TGG | 0.391585 | 4.1:-62162750 | MS.gene72557:CDS |
| TTGATGGGATTAAGGCTATT+GGG | 0.396993 | 4.1:-62162482 | MS.gene72557:CDS |
| TTTCTGTTTGCAGGGTTGCT+AGG | 0.398905 | 4.1:-62162230 | MS.gene72557:CDS |
| GTGTAGTGATAATGTGTTAA+GGG | 0.403587 | 4.1:-62162658 | MS.gene72557:CDS |
| TGAAGAGTGTTCTACATTGC+AGG | 0.404045 | 4.1:-62162697 | MS.gene72557:CDS |
| TTTGCAAAAGTGTCAGTTGC+GGG | 0.408350 | 4.1:-62162277 | MS.gene72557:CDS |
| ATTGCTAACAACAGAAGGTT+TGG | 0.408544 | 4.1:-62161382 | MS.gene72557:CDS |
| TTCTGTTTGCAGGGTTGCTA+GGG | 0.414617 | 4.1:-62162229 | MS.gene72557:CDS |
| GGATTTGATAATGGCATGTT+CGG | 0.419974 | 4.1:-62162183 | MS.gene72557:CDS |
| CTTGTGAAGCTTGAGCTTTG+TGG | 0.422001 | 4.1:-62162519 | MS.gene72557:CDS |
| AGTGATTGGTGCTAGTGAAA+TGG | 0.438381 | 4.1:-62162736 | MS.gene72557:CDS |
| AGTGTAGTGATAATGTGTTA+AGG | 0.449338 | 4.1:-62162659 | MS.gene72557:CDS |
| CCATTATCAATAACCTCAAC+AGG | 0.455104 | 4.1:+62162804 | None:intergenic |
| AAGAAGATTGATTTGAATCC+GGG | 0.456191 | 4.1:-62162345 | MS.gene72557:CDS |
| TGGAGTCTGTAATACATTCA+TGG | 0.461431 | 4.1:-62161362 | MS.gene72557:CDS |
| GATTATTATTCAGGATTGCT+GGG | 0.464395 | 4.1:-62162205 | MS.gene72557:CDS |
| GTGATTGGTGCTAGTGAAAT+GGG | 0.480614 | 4.1:-62162735 | MS.gene72557:CDS |
| GCTTACATGAGACTACTCTA+AGG | 0.483154 | 4.1:+62161325 | None:intergenic |
| AGTTGACATTGTGTGATCAT+AGG | 0.504164 | 4.1:-62162437 | MS.gene72557:CDS |
| GGAGAATATGCTTCCTGTTG+AGG | 0.516115 | 4.1:-62162817 | None:intergenic |
| AAATTGGTTGGGAATGTTGA+GGG | 0.518791 | 4.1:-62162603 | MS.gene72557:CDS |
| CTTGAGCTTTGTGGGTGTGA+AGG | 0.531367 | 4.1:-62162510 | MS.gene72557:CDS |
| CCCAAATACTCATCAAGTCC+CGG | 0.535072 | 4.1:+62162327 | None:intergenic |
| ATGGTTGTCCTAATTTGAGA+AGG | 0.537606 | 4.1:-62162764 | MS.gene72557:CDS |
| ATCATAGGATGGATGATGGA+TGG | 0.540837 | 4.1:-62162422 | MS.gene72557:CDS |
| TGGGAAGTGTTGTCAGATGT+TGG | 0.541636 | 4.1:-62162463 | MS.gene72557:CDS |
| TGTAGTGATAATGTGTTAAG+GGG | 0.549508 | 4.1:-62162657 | MS.gene72557:CDS |
| TTGAGCTTTGTGGGTGTGAA+GGG | 0.551393 | 4.1:-62162509 | MS.gene72557:CDS |
| TGCTCATTGCTAACAACAGA+AGG | 0.553995 | 4.1:-62161387 | MS.gene72557:CDS |
| AAATGCAGCCTCTCAAGTGC+AGG | 0.555404 | 4.1:+62162297 | None:intergenic |
| GTTCTTGTCCTGCACTTGAG+AGG | 0.559400 | 4.1:-62162305 | MS.gene72557:CDS |
| TGGTTGTCCTAATTTGAGAA+GGG | 0.574459 | 4.1:-62162763 | MS.gene72557:CDS |
| TGTGATCATAGGATGGATGA+TGG | 0.581367 | 4.1:-62162426 | MS.gene72557:CDS |
| GTGAGAATTTGAAGACGTTG+AGG | 0.581735 | 4.1:-62162380 | MS.gene72557:CDS |
| GTCTGTAATACATTCATGGA+AGG | 0.593439 | 4.1:-62161358 | MS.gene72557:CDS |
| GGATGATGGATGGATGGCTG+CGG | 0.600102 | 4.1:-62162412 | MS.gene72557:CDS |
| GAAATTGGTTGGGAATGTTG+AGG | 0.606598 | 4.1:-62162604 | MS.gene72557:CDS |
| TAGGATGGATGATGGATGGA+TGG | 0.622771 | 4.1:-62162418 | MS.gene72557:CDS |
| ATTTGCAAAAGTGTCAGTTG+CGG | 0.627786 | 4.1:-62162278 | MS.gene72557:CDS |
| GACATTGTGTGATCATAGGA+TGG | 0.643629 | 4.1:-62162433 | MS.gene72557:CDS |
| ATTATTATTCAGGATTGCTG+GGG | 0.650156 | 4.1:-62162204 | MS.gene72557:CDS |
| GTAGTGATAATGTGTTAAGG+GGG | 0.652549 | 4.1:-62162656 | MS.gene72557:CDS |
| GCGGGATAAGAAGAGTGTGT+CGG | 0.662114 | 4.1:-62162259 | MS.gene72557:CDS |
| GAAGTGTTGTCAGATGTTGG+AGG | 0.680445 | 4.1:-62162460 | MS.gene72557:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATTCTATTGTGTAAT+TGG | - | chr4.1:62162308-62162327 | MS.gene72557:CDS | 20.0% |
| !!! | AGTAATTTTTTCTTTCAGTA+TGG | - | chr4.1:62162400-62162419 | MS.gene72557:CDS | 20.0% |
| ! | CTCTAATCATAGATGTATAT+TGG | - | chr4.1:62162346-62162365 | MS.gene72557:CDS | 25.0% |
| ! | GTAAAATTGCTTTACTTAGA+AGG | - | chr4.1:62162730-62162749 | MS.gene72557:CDS | 25.0% |
| ! | GTTACTTCTATATGTCTATA+TGG | + | chr4.1:62162652-62162671 | None:intergenic | 25.0% |
| !! | CATAACACAAATTAGTTTAG+AGG | - | chr4.1:62162252-62162271 | MS.gene72557:CDS | 25.0% |
| !!! | ATTTTTTCTTTCAGTATGGT+TGG | - | chr4.1:62162404-62162423 | MS.gene72557:CDS | 25.0% |
| !!! | GAATTTGCAGATTTTGAAAT+TGG | - | chr4.1:62161522-62161541 | MS.gene72557:intron | 25.0% |
| !!! | TAAGAAGATTGATTTGAATC+CGG | - | chr4.1:62161795-62161814 | MS.gene72557:intron | 25.0% |
| !!! | TCATATTTTAACTTACCTCT+CGG | - | chr4.1:62162229-62162248 | MS.gene72557:CDS | 25.0% |
| !!! | TTTTGTGTATTGTTTGAAGT+TGG | - | chr4.1:62162602-62162621 | MS.gene72557:CDS | 25.0% |
| AACCTTAAGTCTTAAGTTAG+AGG | + | chr4.1:62162474-62162493 | None:intergenic | 30.0% | |
| AGATTATTATTCAGGATTGC+TGG | - | chr4.1:62161935-62161954 | MS.gene72557:intron | 30.0% | |
| ATAGATGTATATTGGCAATC+TGG | - | chr4.1:62162354-62162373 | MS.gene72557:CDS | 30.0% | |
| ATTATTATTCAGGATTGCTG+GGG | - | chr4.1:62161937-62161956 | MS.gene72557:intron | 30.0% | |
| CTTGTTGCAATATTGGAATA+AGG | + | chr4.1:62162525-62162544 | None:intergenic | 30.0% | |
| GATTAGAGACATTTCAACAT+TGG | + | chr4.1:62162334-62162353 | None:intergenic | 30.0% | |
| GATTATTATTCAGGATTGCT+GGG | - | chr4.1:62161936-62161955 | MS.gene72557:intron | 30.0% | |
| GCAATATTGGAATAAGGAAA+AGG | + | chr4.1:62162519-62162538 | None:intergenic | 30.0% | |
| ! | ACCAAATTTAACGCTTTAGA+TGG | + | chr4.1:62162168-62162187 | None:intergenic | 30.0% |
| ! | AGTGTAGTGATAATGTGTTA+AGG | - | chr4.1:62161482-62161501 | MS.gene72557:intron | 30.0% |
| ! | ATTGATTGCTGTTCTATTTC+AGG | - | chr4.1:62162704-62162723 | MS.gene72557:CDS | 30.0% |
| ! | CTGTTGAGGTTATTGATAAT+GGG | - | chr4.1:62161338-62161357 | MS.gene72557:CDS | 30.0% |
| ! | GTGTAGTGATAATGTGTTAA+GGG | - | chr4.1:62161483-62161502 | MS.gene72557:intron | 30.0% |
| ! | TCCATCTAAAGCGTTAAATT+TGG | - | chr4.1:62162164-62162183 | MS.gene72557:intron | 30.0% |
| ! | TCTAAAGCGTTAAATTTGGT+CGG | - | chr4.1:62162168-62162187 | MS.gene72557:CDS | 30.0% |
| ! | TGTAGTGATAATGTGTTAAG+GGG | - | chr4.1:62161484-62161503 | MS.gene72557:intron | 30.0% |
| !! | AAGAAGATTGATTTGAATCC+GGG | - | chr4.1:62161796-62161815 | MS.gene72557:intron | 30.0% |
| !! | CTATCAACTTGTTGCAATAT+TGG | + | chr4.1:62162532-62162551 | None:intergenic | 30.0% |
| !! | TGAAATGGGTTTGTTAAGTT+TGG | - | chr4.1:62161420-62161439 | MS.gene72557:intron | 30.0% |
| !!! | ATTTTATGGTTCGGTTGTTT+CGG | - | chr4.1:62161561-62161580 | MS.gene72557:intron | 30.0% |
| !!! | TGCAGATTTTGAAATTGGTT+GGG | - | chr4.1:62161527-62161546 | MS.gene72557:intron | 30.0% |
| !!! | TTGCAGATTTTGAAATTGGT+TGG | - | chr4.1:62161526-62161545 | MS.gene72557:intron | 30.0% |
| AAATTGGTTGGGAATGTTGA+GGG | - | chr4.1:62161538-62161557 | MS.gene72557:intron | 35.0% | |
| AATTCAACACATAGTATCCC+AGG | + | chr4.1:62162286-62162305 | None:intergenic | 35.0% | |
| ACTTGAACCCTTCTCAAATT+AGG | + | chr4.1:62161388-62161407 | None:intergenic | 35.0% | |
| AGTTGACATTGTGTGATCAT+AGG | - | chr4.1:62161704-62161723 | MS.gene72557:intron | 35.0% | |
| ATGGTTGTCCTAATTTGAGA+AGG | - | chr4.1:62161377-62161396 | MS.gene72557:CDS | 35.0% | |
| ATGTATATTGGCAATCTGGT+CGG | - | chr4.1:62162358-62162377 | MS.gene72557:CDS | 35.0% | |
| ATTCAACACATAGTATCCCA+GGG | + | chr4.1:62162285-62162304 | None:intergenic | 35.0% | |
| ATTGCTAACAACAGAAGGTT+TGG | - | chr4.1:62162759-62162778 | MS.gene72557:CDS | 35.0% | |
| CACAAATTAGTTCATCACCA+GGG | + | chr4.1:62162208-62162227 | None:intergenic | 35.0% | |
| CACCTCTAACTTAAGACTTA+AGG | - | chr4.1:62162469-62162488 | MS.gene72557:CDS | 35.0% | |
| CCATTATCAATAACCTCAAC+AGG | + | chr4.1:62161340-62161359 | None:intergenic | 35.0% | |
| CCTGTTGAGGTTATTGATAA+TGG | - | chr4.1:62161337-62161356 | MS.gene72557:CDS | 35.0% | |
| GTCTGTAATACATTCATGGA+AGG | - | chr4.1:62162783-62162802 | MS.gene72557:CDS | 35.0% | |
| TGCTAGGGAGATTATTATTC+AGG | - | chr4.1:62161927-62161946 | MS.gene72557:intron | 35.0% | |
| TGGAGTCTGTAATACATTCA+TGG | - | chr4.1:62162779-62162798 | MS.gene72557:CDS | 35.0% | |
| TGGTTGTCCTAATTTGAGAA+GGG | - | chr4.1:62161378-62161397 | MS.gene72557:CDS | 35.0% | |
| TTCTTTCAGTATGGTTGGAA+TGG | - | chr4.1:62162409-62162428 | MS.gene72557:CDS | 35.0% | |
| TTGATGGGATTAAGGCTATT+GGG | - | chr4.1:62161659-62161678 | MS.gene72557:intron | 35.0% | |
| TTTCCTGTTTGATTGACGAT+TGG | - | chr4.1:62162076-62162095 | MS.gene72557:intron | 35.0% | |
| TTTGATGGGATTAAGGCTAT+TGG | - | chr4.1:62161658-62161677 | MS.gene72557:intron | 35.0% | |
| ! | GCTATACTGTCTAGAACTTA+TGG | - | chr4.1:62162047-62162066 | MS.gene72557:intron | 35.0% |
| ! | GTAGTGATAATGTGTTAAGG+GGG | - | chr4.1:62161485-62161504 | MS.gene72557:intron | 35.0% |
| ! | TAAGGTTGTTGACTAGAACA+AGG | - | chr4.1:62162487-62162506 | MS.gene72557:CDS | 35.0% |
| ! | TGTTGAGGGATTTTATGGTT+CGG | - | chr4.1:62161552-62161571 | MS.gene72557:intron | 35.0% |
| !! | ATGGCTTTGTCGACTAAAAT+TGG | + | chr4.1:62162633-62162652 | None:intergenic | 35.0% |
| !! | ATTTGCAAAAGTGTCAGTTG+CGG | - | chr4.1:62161863-62161882 | MS.gene72557:intron | 35.0% |
| !! | GGATTTGATAATGGCATGTT+CGG | - | chr4.1:62161958-62161977 | MS.gene72557:intron | 35.0% |
| !!! | TTTTAGCTCAAGGTTGTAAG+AGG | - | chr4.1:62161599-62161618 | MS.gene72557:intron | 35.0% |
| AACTAACGCTCAACACATCA+TGG | + | chr4.1:62162134-62162153 | None:intergenic | 40.0% | |
| CCACAAATTAGTTCATCACC+AGG | + | chr4.1:62162209-62162228 | None:intergenic | 40.0% | |
| GAAATTGGTTGGGAATGTTG+AGG | - | chr4.1:62161537-62161556 | MS.gene72557:intron | 40.0% | |
| GACATTGTGTGATCATAGGA+TGG | - | chr4.1:62161708-62161727 | MS.gene72557:intron | 40.0% | |
| GATTGCTGGGGATTTGATAA+TGG | - | chr4.1:62161949-62161968 | MS.gene72557:intron | 40.0% | |
| GTGAGAATTTGAAGACGTTG+AGG | - | chr4.1:62161761-62161780 | MS.gene72557:intron | 40.0% | |
| GTGTTCTACATTGCAGGAAT+TGG | - | chr4.1:62161450-62161469 | MS.gene72557:intron | 40.0% | |
| TAATGTGTTAAGGGGGATTG+CGG | - | chr4.1:62161492-62161511 | MS.gene72557:intron | 40.0% | |
| TGCTCATTGCTAACAACAGA+AGG | - | chr4.1:62162754-62162773 | MS.gene72557:CDS | 40.0% | |
| TGTATATTGGCAATCTGGTC+GGG | - | chr4.1:62162359-62162378 | MS.gene72557:CDS | 40.0% | |
| TGTGATCATAGGATGGATGA+TGG | - | chr4.1:62161715-62161734 | MS.gene72557:intron | 40.0% | |
| TTGAGAAGGGTTCAAGTGAT+TGG | - | chr4.1:62161391-62161410 | MS.gene72557:CDS | 40.0% | |
| TTGCCAATCGTCAATCAAAC+AGG | + | chr4.1:62162082-62162101 | None:intergenic | 40.0% | |
| ! | CCTGGTGATGAACTAATTTG+TGG | - | chr4.1:62162206-62162225 | MS.gene72557:CDS | 40.0% |
| ! | CTAATTTGTGTTATGCCGAG+AGG | + | chr4.1:62162247-62162266 | None:intergenic | 40.0% |
| ! | GGGAATGTTGAGGGATTTTA+TGG | - | chr4.1:62161547-62161566 | MS.gene72557:intron | 40.0% |
| ! | TTGTGAAGCTTGAGCTTTGT+GGG | - | chr4.1:62161623-62161642 | MS.gene72557:intron | 40.0% |
| !! | AGGGAGTTTTGATGGGATTA+AGG | - | chr4.1:62161651-62161670 | MS.gene72557:intron | 40.0% |
| !! | AGTGATTGGTGCTAGTGAAA+TGG | - | chr4.1:62161405-62161424 | MS.gene72557:CDS | 40.0% |
| !! | ATCATAGGATGGATGATGGA+TGG | - | chr4.1:62161719-62161738 | MS.gene72557:intron | 40.0% |
| !! | GGGTTAGTTGCTTTAGCTAA+TGG | - | chr4.1:62161358-62161377 | MS.gene72557:CDS | 40.0% |
| !! | GTGATTGGTGCTAGTGAAAT+GGG | - | chr4.1:62161406-62161425 | MS.gene72557:CDS | 40.0% |
| !! | TGAAGAGTGTTCTACATTGC+AGG | - | chr4.1:62161444-62161463 | MS.gene72557:intron | 40.0% |
| !! | TTTGCAAAAGTGTCAGTTGC+GGG | - | chr4.1:62161864-62161883 | MS.gene72557:intron | 40.0% |
| !!! | GGCTTTGTTTTCTGTTTGCA+GGG | - | chr4.1:62161903-62161922 | MS.gene72557:intron | 40.0% |
| !!! | GGTTTGACGATTTTAGCTCA+AGG | - | chr4.1:62161589-62161608 | MS.gene72557:intron | 40.0% |
| ACACATAGTATCCCAGGGAA+AGG | + | chr4.1:62162280-62162299 | None:intergenic | 45.0% | |
| CACATAGTATCCCAGGGAAA+GGG | + | chr4.1:62162279-62162298 | None:intergenic | 45.0% | |
| CCCAAATACTCATCAAGTCC+CGG | + | chr4.1:62161817-62161836 | None:intergenic | 45.0% | |
| CCGGGACTTGATGAGTATTT+GGG | - | chr4.1:62161814-62161833 | MS.gene72557:intron | 45.0% | |
| CTTGTGAAGCTTGAGCTTTG+TGG | - | chr4.1:62161622-62161641 | MS.gene72557:intron | 45.0% | |
| GTATATTGGCAATCTGGTCG+GGG | - | chr4.1:62162360-62162379 | MS.gene72557:CDS | 45.0% | |
| TATATTGGCAATCTGGTCGG+GGG | - | chr4.1:62162361-62162380 | MS.gene72557:CDS | 45.0% | |
| TCCGGGACTTGATGAGTATT+TGG | - | chr4.1:62161813-62161832 | MS.gene72557:intron | 45.0% | |
| TTCTGTTTGCAGGGTTGCTA+GGG | - | chr4.1:62161912-62161931 | MS.gene72557:intron | 45.0% | |
| TTTCTGTTTGCAGGGTTGCT+AGG | - | chr4.1:62161911-62161930 | MS.gene72557:intron | 45.0% | |
| ! | GGTTCGGTTGTTTCGGATAT+TGG | - | chr4.1:62161568-62161587 | MS.gene72557:intron | 45.0% |
| ! | TTGAGCTTTGTGGGTGTGAA+GGG | - | chr4.1:62161632-62161651 | MS.gene72557:intron | 45.0% |
| !! | GAAGTGTTGTCAGATGTTGG+AGG | - | chr4.1:62161681-62161700 | MS.gene72557:intron | 45.0% |
| !! | GGTGTGAAGGGAGTTTTGAT+GGG | - | chr4.1:62161644-62161663 | MS.gene72557:intron | 45.0% |
| !! | TAGGATGGATGATGGATGGA+TGG | - | chr4.1:62161723-62161742 | MS.gene72557:intron | 45.0% |
| !! | TGGGAAGTGTTGTCAGATGT+TGG | - | chr4.1:62161678-62161697 | MS.gene72557:intron | 45.0% |
| !!! | CGGCTTTGTTTTCTGTTTGC+AGG | - | chr4.1:62161902-62161921 | MS.gene72557:intron | 45.0% |
| AAATGCAGCCTCTCAAGTGC+AGG | + | chr4.1:62161847-62161866 | None:intergenic | 50.0% | |
| AGTTTAGAGGTCCCTTTCCC+TGG | - | chr4.1:62162265-62162284 | MS.gene72557:CDS | 50.0% | |
| ATATTGGCAATCTGGTCGGG+GGG | - | chr4.1:62162362-62162381 | MS.gene72557:CDS | 50.0% | |
| GTTCTTGTCCTGCACTTGAG+AGG | - | chr4.1:62161836-62161855 | MS.gene72557:intron | 50.0% | |
| GTTTAGAGGTCCCTTTCCCT+GGG | - | chr4.1:62162266-62162285 | MS.gene72557:CDS | 50.0% | |
| TCATCACCAGGGATCGAACT+CGG | + | chr4.1:62162197-62162216 | None:intergenic | 50.0% | |
| TCGGCTTTGCAACTGTTTGC+AGG | - | chr4.1:62161977-62161996 | MS.gene72557:intron | 50.0% | |
| ! | CTTGAGCTTTGTGGGTGTGA+AGG | - | chr4.1:62161631-62161650 | MS.gene72557:intron | 50.0% |
| ! | GCGGGATAAGAAGAGTGTGT+CGG | - | chr4.1:62161882-62161901 | MS.gene72557:intron | 50.0% |
| !! | GGGTGTGAAGGGAGTTTTGA+TGG | - | chr4.1:62161643-62161662 | MS.gene72557:intron | 50.0% |
| CATCACCAGGGATCGAACTC+GGG | + | chr4.1:62162196-62162215 | None:intergenic | 55.0% | |
| TATTGGCAATCTGGTCGGGG+GGG | - | chr4.1:62162363-62162382 | MS.gene72557:CDS | 55.0% | |
| !! | GGATGATGGATGGATGGCTG+CGG | - | chr4.1:62161729-62161748 | MS.gene72557:intron | 55.0% |
| TAAGGGGGATTGCGGCGTGT+GGG | - | chr4.1:62161500-62161519 | MS.gene72557:intron | 60.0% | |
| TTAAGGGGGATTGCGGCGTG+TGG | - | chr4.1:62161499-62161518 | MS.gene72557:intron | 60.0% | |
| CGGTACCCGAGTTCGATCCC+TGG | - | chr4.1:62162188-62162207 | MS.gene72557:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 62161331 | 62162832 | 62161331 | ID=MS.gene72557 |
| chr4.1 | mRNA | 62161331 | 62162832 | 62161331 | ID=MS.gene72557.t1;Parent=MS.gene72557 |
| chr4.1 | exon | 62162165 | 62162832 | 62162165 | ID=MS.gene72557.t1.exon1;Parent=MS.gene72557.t1 |
| chr4.1 | CDS | 62162165 | 62162832 | 62162165 | ID=cds.MS.gene72557.t1;Parent=MS.gene72557.t1 |
| chr4.1 | exon | 62161331 | 62161437 | 62161331 | ID=MS.gene72557.t1.exon2;Parent=MS.gene72557.t1 |
| chr4.1 | CDS | 62161331 | 62161437 | 62161331 | ID=cds.MS.gene72557.t1;Parent=MS.gene72557.t1 |
| Gene Sequence |
| Protein sequence |
