AlfalfaGEDB | MS.gene59920

M. sativa cultivar XinJiangDaYe / MS.gene59920

KEGG: -
GO: -
PFAM: PF04640.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59920.t1	XP_003609491.2	96.4	252	7	1	1	250	1	252	5.30E-140	506.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59920.t1	A0A396IEQ3	96.4	252	7	1	1	250	1	252	3.8e-140	506.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene59920.t1	TF	PLATZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene59920	0.827897	1.21E-54	-1.69E-46
MS.gene049488	MS.gene59920	-0.805254	1.46E-49	-1.69E-46
MS.gene049549	MS.gene59920	0.809718	1.65E-50	-1.69E-46
MS.gene049611	MS.gene59920	0.809553	1.79E-50	-1.69E-46
MS.gene050133	MS.gene59920	0.804354	2.25E-49	-1.69E-46
MS.gene050380	MS.gene59920	0.802949	4.40E-49	-1.69E-46
MS.gene050710	MS.gene59920	0.822052	2.91E-53	-1.69E-46
MS.gene050720	MS.gene59920	0.83266	8.33E-56	-1.69E-46
MS.gene050725	MS.gene59920	0.802495	5.46E-49	-1.69E-46
MS.gene050747	MS.gene59920	-0.802977	4.34E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59920.t1	MTR_4g116300	96.400	250	7	1	3	250	1	250	0.0	499
MS.gene59920.t1	MTR_4g094680	43.825	251	102	5	5	249	19	236	4.61e-61	192
MS.gene59920.t1	MTR_2g055210	41.434	251	131	6	5	249	99	339	1.37e-58	189
MS.gene59920.t1	MTR_2g036170	44.033	243	109	7	7	249	36	251	8.26e-54	174
MS.gene59920.t1	MTR_4g078170	34.156	243	110	5	8	249	15	208	4.52e-40	138
MS.gene59920.t1	MTR_5g007230	45.926	135	72	1	8	141	21	155	2.97e-39	135
MS.gene59920.t1	MTR_8g066820	48.462	130	66	1	5	133	30	159	2.21e-38	134
MS.gene59920.t1	MTR_5g030130	45.652	138	74	1	5	141	32	169	7.73e-37	130
MS.gene59920.t1	MTR_5g030130	47.727	132	68	1	5	135	32	163	1.63e-36	128
MS.gene59920.t1	MTR_7g102790	42.647	136	74	1	8	139	7	142	5.74e-33	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59920.t1	AT2G12646	66.667	258	74	5	3	250	1	256	2.36e-117	336
MS.gene59920.t1	AT2G12646	66.667	258	74	5	3	250	1	256	2.36e-117	336
MS.gene59920.t1	AT2G12646	66.535	254	73	5	7	250	2	253	4.06e-115	330
MS.gene59920.t1	AT3G60670	45.455	253	112	4	8	249	7	244	2.92e-72	221
MS.gene59920.t1	AT1G31040	46.311	244	111	6	7	249	18	242	3.09e-61	193
MS.gene59920.t1	AT4G17900	32.669	251	108	5	5	249	31	226	6.57e-37	130
MS.gene59920.t1	AT4G17900	32.669	251	108	5	5	249	17	212	7.40e-37	129
MS.gene59920.t1	AT1G32700	48.485	132	67	1	8	138	12	143	1.15e-36	129
MS.gene59920.t1	AT1G76590	32.922	243	147	3	8	249	18	245	3.53e-35	126
MS.gene59920.t1	AT1G21000	34.375	256	129	6	8	249	13	243	6.86e-35	125

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Find 54 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAAAGCCTGCATGGT+TGG	0.480103	8.1:+10748282	MS.gene59920:CDS
AACAAAGAGGAGATCTATGA+GGG	0.605762	8.1:-10749673	None:intergenic
AACCGCCAATTCAAAGGATC+AGG	0.462617	8.1:+10748751	MS.gene59920:CDS
AACGACGAACTTGAAGAAGG+CGG	0.734968	8.1:-10748438	None:intergenic
AACTTTATTGCTATTATTAT+TGG	0.112766	8.1:-10749603	None:intergenic
AAGACCTTTCACCCTACTTA+AGG	0.378382	8.1:+10749366	MS.gene59920:CDS
AAGTATGTGTGCAAAATTCA+TGG	0.453257	8.1:+10749580	MS.gene59920:CDS
AATGACAAGGTCAACAATTG+TGG	0.532726	8.1:+10749454	MS.gene59920:CDS
AATGGATAAAAGGTTCTTGG+AGG	0.548499	8.1:-10748801	None:intergenic
AGCAATGGATAAAAGGTTCT+TGG	0.405041	8.1:-10748804	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTATGTGTGCAAAATTCA+TGG	+	chr8.1:10749580-10749599	MS.gene59920:CDS	30.0%
ATAGTCAGGACTTAATTGTA+GGG	-	chr8.1:10749402-10749421	None:intergenic	30.0%
ATGGAGTATATATTTGTAGG+TGG	+	chr8.1:10749322-10749341	MS.gene59920:intron	30.0%
ATGTGACCGTTATAAATCAA+GGG	+	chr8.1:10749096-10749115	MS.gene59920:intron	30.0%
ATTGAACATGTATATGTACC+TGG	-	chr8.1:10748525-10748544	None:intergenic	30.0%
TATCTAATTCCACAAGAGAT+GGG	+	chr8.1:10749419-10749438	MS.gene59920:CDS	30.0%
TATGTGACCGTTATAAATCA+AGG	+	chr8.1:10749095-10749114	MS.gene59920:intron	30.0%
AACAAAGAGGAGATCTATGA+GGG	-	chr8.1:10749676-10749695	None:intergenic	35.0%
AATGACAAGGTCAACAATTG+TGG	+	chr8.1:10749454-10749473	MS.gene59920:CDS	35.0%
AATGGATAAAAGGTTCTTGG+AGG	-	chr8.1:10748804-10748823	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	10748163	10749697	10748163	ID=MS.gene59920
chr8.1	mRNA	10748163	10749697	10748163	ID=MS.gene59920.t1;Parent=MS.gene59920
chr8.1	exon	10748163	10748171	10748163	ID=MS.gene59920.t1.exon1;Parent=MS.gene59920.t1
chr8.1	CDS	10748163	10748171	10748163	ID=cds.MS.gene59920.t1;Parent=MS.gene59920.t1
chr8.1	exon	10748280	10748525	10748280	ID=MS.gene59920.t1.exon2;Parent=MS.gene59920.t1
chr8.1	CDS	10748280	10748525	10748280	ID=cds.MS.gene59920.t1;Parent=MS.gene59920.t1
chr8.1	exon	10748700	10748840	10748700	ID=MS.gene59920.t1.exon3;Parent=MS.gene59920.t1
chr8.1	CDS	10748700	10748840	10748700	ID=cds.MS.gene59920.t1;Parent=MS.gene59920.t1
chr8.1	exon	10749341	10749697	10749341	ID=MS.gene59920.t1.exon4;Parent=MS.gene59920.t1
chr8.1	CDS	10749341	10749697	10749341	ID=cds.MS.gene59920.t1;Parent=MS.gene59920.t1

Gene Sequence

>MS.gene59920

ATGATCATGGTTTGTGGAATTCCCTTTGTTTTCTTAAGTCTTTTTCTATCAAAATTCTTATATATTGATGGCTACAATTTTGGTTAAAATGATTTAATTTGGTAATTGTTAATATAGGGAAACCAAAAGCCTGCATGGTTGGAAGCTCTTTATACAGAAAAGTTCTTTGTTGGTTGTTCTTACCATGAGAATGCAAAAAAGAATGAGAAGAATGTTTGTTGCTTAGATTGTTGCACAAGTATTTGTCCTCATTGCTTTCCATCTCATCGCTACCACCGCCTTCTTCAAGTTCGTCGTTATGTTTATCATGATGTTCTTAGATTGGAAGAACTTGAGAAACTTATAGACTGCACCAATGTCCAGGTACATATACATGTTCAATAAAGTAGAATTCTTGTTCACTAGTTATATGTTGCATATTGATTCATAATTGCATACAAGAAAACTTTATTGAATTCCAATTAAATCTTATGTAATTCAACATGGATGTACTTTTAATTTCTGATTGAAAAAGGTTTGAATTATGTTGTTTACCAGGCCTATACTATCAATAGTGCCAAAGTGGTGTTCATCAAGAAGAGACCTCAAAACCGCCAATTCAAAGGATCAGGAAACTACTGCACTTCATGTGATAGAATCCTCCAAGAACCTTTTATCCATTGCTCTCTTGGATGCAAGGTACATATATTAATTATACATAGTATTATGGTTTATACATAGAATTATGGAATATTAATGAAACTGATTGTTCCTTTTTTTTAGTATTTTTTATGGAACATATATATACTTGTATCAATCAAAAACTCATTGAATTAAATGATTGGATATACTTGAATTATCTCATGCTCATTGACTAAAATAAAATTGAAATTGAGCACATATATTGATTGGATATACTTGAATTATACAGCGATTGTAATTGATGCGCAGTGTATGTGACCGTTATAAATCAAGGGATACCGAGTTCAGTTTCCTTCTCATAAAAAAAATATGTACTTGAATTTAATTATATAAAAAAGGATTATAGTTAAAAACTCATTCCATTAAATTCATTTATGCTCATTGACTTGAATTGAAGACACAATTTGAAGCACAAGATATGGGTGATTAATTATAAGAGAAAATTAGTTAATTAGTTAAATATGCTTAATTTGATCATATGGAGTATATATTTGTAGGTGGATTTTGTGCTGAAACACTACAAAGACCTTTCACCCTACTTAAGGATATGCAAGACCCTACAATTAAGTCCTGACTATCTAATTCCACAAGAGATGGGGGATGAATTAGAAATGACAAGGTCAACAATTGTGGATTGTGATGATCCAATGAGTTCATATTCAGGATCATCATCAGGGTCAGAGAATATGAGCATGGCATGCACAGAAATTGTTAGGAAGAGAAGAAGTGGATGGACAAGTATGTGTGCAAAATTCATGGCCAATAATAATAGCAATAAAGTTTCTGATGAAGATATGGCTACTAGTATGATTAGTAGAAGAAAAGGAGTCCCTCATAGATCTCCTCTTTGTTAA

Protein sequence

>MS.gene59920.t1

MIMGNQKPAWLEALYTEKFFVGCSYHENAKKNEKNVCCLDCCTSICPHCFPSHRYHRLLQVRRYVYHDVLRLEELEKLIDCTNVQAYTINSAKVVFIKKRPQNRQFKGSGNYCTSCDRILQEPFIHCSLGCKVDFVLKHYKDLSPYLRICKTLQLSPDYLIPQEMGDELEMTRSTIVDCDDPMSSYSGSSSGSENMSMACTEIVRKRRSGWTSMCAKFMANNNSNKVSDEDMATSMISRRKGVPHRSPLC