Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59920.t1 | XP_003609491.2 | 96.4 | 252 | 7 | 1 | 1 | 250 | 1 | 252 | 5.30E-140 | 506.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59920.t1 | A0A396IEQ3 | 96.4 | 252 | 7 | 1 | 1 | 250 | 1 | 252 | 3.8e-140 | 506.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene59920.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene59920 | 0.827897 | 1.21E-54 | -1.69E-46 |
| MS.gene049488 | MS.gene59920 | -0.805254 | 1.46E-49 | -1.69E-46 |
| MS.gene049549 | MS.gene59920 | 0.809718 | 1.65E-50 | -1.69E-46 |
| MS.gene049611 | MS.gene59920 | 0.809553 | 1.79E-50 | -1.69E-46 |
| MS.gene050133 | MS.gene59920 | 0.804354 | 2.25E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene59920 | 0.802949 | 4.40E-49 | -1.69E-46 |
| MS.gene050710 | MS.gene59920 | 0.822052 | 2.91E-53 | -1.69E-46 |
| MS.gene050720 | MS.gene59920 | 0.83266 | 8.33E-56 | -1.69E-46 |
| MS.gene050725 | MS.gene59920 | 0.802495 | 5.46E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene59920 | -0.802977 | 4.34E-49 | -1.69E-46 |
| MS.gene050809 | MS.gene59920 | 0.823892 | 1.08E-53 | -1.69E-46 |
| MS.gene05081 | MS.gene59920 | -0.800517 | 1.39E-48 | -1.69E-46 |
| MS.gene050868 | MS.gene59920 | -0.802095 | 6.60E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene59920 | -0.801635 | 8.20E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene59920 | 0.812403 | 4.31E-51 | -1.69E-46 |
| MS.gene051158 | MS.gene59920 | 0.803024 | 4.25E-49 | -1.69E-46 |
| MS.gene051385 | MS.gene59920 | 0.808969 | 2.39E-50 | -1.69E-46 |
| MS.gene051552 | MS.gene59920 | 0.838289 | 3.14E-57 | -1.69E-46 |
| MS.gene051838 | MS.gene59920 | -0.815029 | 1.14E-51 | -1.69E-46 |
| MS.gene051907 | MS.gene59920 | 0.809726 | 1.64E-50 | -1.69E-46 |
| MS.gene051996 | MS.gene59920 | 0.845992 | 2.87E-59 | -1.69E-46 |
| MS.gene052211 | MS.gene59920 | 0.808256 | 3.39E-50 | -1.69E-46 |
| MS.gene052223 | MS.gene59920 | 0.832352 | 9.93E-56 | -1.69E-46 |
| MS.gene05234 | MS.gene59920 | 0.812333 | 4.47E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene59920 | 0.81892 | 1.52E-52 | -1.69E-46 |
| MS.gene052606 | MS.gene59920 | 0.819858 | 9.31E-53 | -1.69E-46 |
| MS.gene052702 | MS.gene59920 | 0.804278 | 2.33E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene59920 | 0.822204 | 2.68E-53 | -1.69E-46 |
| MS.gene053421 | MS.gene59920 | 0.804953 | 1.69E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene59920 | 0.826416 | 2.74E-54 | -1.69E-46 |
| MS.gene054290 | MS.gene59920 | 0.818467 | 1.93E-52 | -1.69E-46 |
| MS.gene054706 | MS.gene59920 | 0.824746 | 6.83E-54 | -1.69E-46 |
| MS.gene054742 | MS.gene59920 | 0.872466 | 3.11E-67 | -1.69E-46 |
| MS.gene055158 | MS.gene59920 | 0.808714 | 2.70E-50 | -1.69E-46 |
| MS.gene055159 | MS.gene59920 | 0.824521 | 7.72E-54 | -1.69E-46 |
| MS.gene055240 | MS.gene59920 | 0.811296 | 7.52E-51 | -1.69E-46 |
| MS.gene056330 | MS.gene59920 | 0.870335 | 1.58E-66 | -1.69E-46 |
| MS.gene056387 | MS.gene59920 | -0.805652 | 1.20E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene59920 | 0.803435 | 3.49E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene59920 | 0.803856 | 2.86E-49 | -1.69E-46 |
| MS.gene056678 | MS.gene59920 | 0.80754 | 4.81E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene59920 | 0.837128 | 6.24E-57 | -1.69E-46 |
| MS.gene056688 | MS.gene59920 | 0.827467 | 1.54E-54 | -1.69E-46 |
| MS.gene056690 | MS.gene59920 | 0.809214 | 2.11E-50 | -1.69E-46 |
| MS.gene056691 | MS.gene59920 | 0.805796 | 1.12E-49 | -1.69E-46 |
| MS.gene056748 | MS.gene59920 | 0.804133 | 2.50E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene59920 | 0.84379 | 1.13E-58 | -1.69E-46 |
| MS.gene056922 | MS.gene59920 | 0.81971 | 1.01E-52 | -1.69E-46 |
| MS.gene056923 | MS.gene59920 | 0.810955 | 8.91E-51 | -1.69E-46 |
| MS.gene056924 | MS.gene59920 | 0.82122 | 4.53E-53 | -1.69E-46 |
| MS.gene057081 | MS.gene59920 | 0.814583 | 1.43E-51 | -1.69E-46 |
| MS.gene057261 | MS.gene59920 | 0.813138 | 2.98E-51 | -1.69E-46 |
| MS.gene057544 | MS.gene59920 | 0.82991 | 3.95E-55 | -1.69E-46 |
| MS.gene057717 | MS.gene59920 | 0.805109 | 1.56E-49 | -1.69E-46 |
| MS.gene058157 | MS.gene59920 | -0.802064 | 6.70E-49 | -1.69E-46 |
| MS.gene058158 | MS.gene59920 | 0.831973 | 1.23E-55 | -1.69E-46 |
| MS.gene058177 | MS.gene59920 | 0.818198 | 2.22E-52 | -1.69E-46 |
| MS.gene058376 | MS.gene59920 | -0.805133 | 1.55E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene59920 | -0.800652 | 1.30E-48 | -1.69E-46 |
| MS.gene058418 | MS.gene59920 | 0.841194 | 5.51E-58 | -1.69E-46 |
| MS.gene058444 | MS.gene59920 | -0.805768 | 1.14E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene59920 | 0.804636 | 1.96E-49 | -1.69E-46 |
| MS.gene05926 | MS.gene59920 | 0.806182 | 9.31E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene59920 | 0.814131 | 1.80E-51 | -1.69E-46 |
| MS.gene05960 | MS.gene59920 | 0.801538 | 8.59E-49 | -1.69E-46 |
| MS.gene059891 | MS.gene59920 | 0.814154 | 1.78E-51 | -1.69E-46 |
| MS.gene059892 | MS.gene59920 | 0.816136 | 6.46E-52 | -1.69E-46 |
| MS.gene059922 | MS.gene59920 | 0.800971 | 1.12E-48 | -1.69E-46 |
| MS.gene060087 | MS.gene59920 | 0.847265 | 1.29E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59920.t1 | MTR_4g116300 | 96.400 | 250 | 7 | 1 | 3 | 250 | 1 | 250 | 0.0 | 499 |
| MS.gene59920.t1 | MTR_4g094680 | 43.825 | 251 | 102 | 5 | 5 | 249 | 19 | 236 | 4.61e-61 | 192 |
| MS.gene59920.t1 | MTR_2g055210 | 41.434 | 251 | 131 | 6 | 5 | 249 | 99 | 339 | 1.37e-58 | 189 |
| MS.gene59920.t1 | MTR_2g036170 | 44.033 | 243 | 109 | 7 | 7 | 249 | 36 | 251 | 8.26e-54 | 174 |
| MS.gene59920.t1 | MTR_4g078170 | 34.156 | 243 | 110 | 5 | 8 | 249 | 15 | 208 | 4.52e-40 | 138 |
| MS.gene59920.t1 | MTR_5g007230 | 45.926 | 135 | 72 | 1 | 8 | 141 | 21 | 155 | 2.97e-39 | 135 |
| MS.gene59920.t1 | MTR_8g066820 | 48.462 | 130 | 66 | 1 | 5 | 133 | 30 | 159 | 2.21e-38 | 134 |
| MS.gene59920.t1 | MTR_5g030130 | 45.652 | 138 | 74 | 1 | 5 | 141 | 32 | 169 | 7.73e-37 | 130 |
| MS.gene59920.t1 | MTR_5g030130 | 47.727 | 132 | 68 | 1 | 5 | 135 | 32 | 163 | 1.63e-36 | 128 |
| MS.gene59920.t1 | MTR_7g102790 | 42.647 | 136 | 74 | 1 | 8 | 139 | 7 | 142 | 5.74e-33 | 119 |
| MS.gene59920.t1 | MTR_1g062160 | 42.188 | 128 | 72 | 2 | 8 | 133 | 7 | 134 | 2.11e-29 | 110 |
| MS.gene59920.t1 | MTR_2g084525 | 39.007 | 141 | 76 | 4 | 8 | 138 | 5 | 145 | 2.08e-24 | 97.8 |
| MS.gene59920.t1 | MTR_8g105930 | 32.704 | 159 | 80 | 4 | 1 | 133 | 1 | 158 | 2.67e-21 | 89.7 |
| MS.gene59920.t1 | MTR_2g084495 | 37.857 | 140 | 76 | 4 | 10 | 138 | 6 | 145 | 7.04e-21 | 88.2 |
| MS.gene59920.t1 | MTR_2g084510 | 34.752 | 141 | 82 | 4 | 8 | 138 | 4 | 144 | 4.83e-20 | 86.3 |
| MS.gene59920.t1 | MTR_2g060500 | 37.226 | 137 | 69 | 5 | 10 | 132 | 12 | 145 | 2.29e-18 | 79.3 |
| MS.gene59920.t1 | MTR_2g060540 | 37.857 | 140 | 70 | 6 | 10 | 135 | 12 | 148 | 4.04e-18 | 79.0 |
| MS.gene59920.t1 | MTR_8g097310 | 33.929 | 112 | 66 | 2 | 36 | 145 | 2 | 107 | 1.75e-14 | 69.3 |
| MS.gene59920.t1 | MTR_5g077740 | 31.868 | 91 | 59 | 2 | 7 | 95 | 22 | 111 | 4.63e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59920.t1 | AT2G12646 | 66.667 | 258 | 74 | 5 | 3 | 250 | 1 | 256 | 2.36e-117 | 336 |
| MS.gene59920.t1 | AT2G12646 | 66.667 | 258 | 74 | 5 | 3 | 250 | 1 | 256 | 2.36e-117 | 336 |
| MS.gene59920.t1 | AT2G12646 | 66.535 | 254 | 73 | 5 | 7 | 250 | 2 | 253 | 4.06e-115 | 330 |
| MS.gene59920.t1 | AT3G60670 | 45.455 | 253 | 112 | 4 | 8 | 249 | 7 | 244 | 2.92e-72 | 221 |
| MS.gene59920.t1 | AT1G31040 | 46.311 | 244 | 111 | 6 | 7 | 249 | 18 | 242 | 3.09e-61 | 193 |
| MS.gene59920.t1 | AT4G17900 | 32.669 | 251 | 108 | 5 | 5 | 249 | 31 | 226 | 6.57e-37 | 130 |
| MS.gene59920.t1 | AT4G17900 | 32.669 | 251 | 108 | 5 | 5 | 249 | 17 | 212 | 7.40e-37 | 129 |
| MS.gene59920.t1 | AT1G32700 | 48.485 | 132 | 67 | 1 | 8 | 138 | 12 | 143 | 1.15e-36 | 129 |
| MS.gene59920.t1 | AT1G76590 | 32.922 | 243 | 147 | 3 | 8 | 249 | 18 | 245 | 3.53e-35 | 126 |
| MS.gene59920.t1 | AT1G21000 | 34.375 | 256 | 129 | 6 | 8 | 249 | 13 | 243 | 6.86e-35 | 125 |
| MS.gene59920.t1 | AT1G21000 | 34.363 | 259 | 125 | 6 | 8 | 249 | 16 | 246 | 7.08e-35 | 125 |
| MS.gene59920.t1 | AT1G43000 | 43.077 | 130 | 73 | 1 | 8 | 136 | 16 | 145 | 1.07e-32 | 119 |
| MS.gene59920.t1 | AT1G43000 | 43.077 | 130 | 73 | 1 | 8 | 136 | 9 | 138 | 1.14e-32 | 119 |
| MS.gene59920.t1 | AT5G46710 | 41.985 | 131 | 74 | 2 | 5 | 133 | 25 | 155 | 6.32e-30 | 110 |
| MS.gene59920.t1 | AT5G46710 | 41.985 | 131 | 74 | 2 | 5 | 133 | 9 | 139 | 7.37e-30 | 111 |
| MS.gene59920.t1 | AT5G46710 | 41.985 | 131 | 74 | 2 | 5 | 133 | 25 | 155 | 9.49e-30 | 111 |
| MS.gene59920.t1 | AT2G01818 | 39.860 | 143 | 76 | 3 | 9 | 141 | 12 | 154 | 1.38e-28 | 108 |
| MS.gene59920.t1 | AT2G27930 | 41.844 | 141 | 71 | 3 | 6 | 135 | 2 | 142 | 3.48e-28 | 105 |
| MS.gene59920.t1 | AT2G27930 | 41.844 | 141 | 71 | 3 | 6 | 135 | 2 | 142 | 3.48e-28 | 105 |
| MS.gene59920.t1 | AT2G27930 | 41.429 | 140 | 71 | 3 | 6 | 134 | 2 | 141 | 8.87e-28 | 105 |
| MS.gene59920.t1 | AT2G27930 | 41.429 | 140 | 71 | 3 | 6 | 134 | 2 | 141 | 8.87e-28 | 105 |
| MS.gene59920.t1 | AT1G32700 | 49.020 | 102 | 51 | 1 | 38 | 138 | 3 | 104 | 2.33e-26 | 101 |
| MS.gene59920.t1 | AT2G27930 | 44.186 | 86 | 39 | 1 | 58 | 134 | 59 | 144 | 3.89e-17 | 77.4 |
| MS.gene59920.t1 | AT2G27930 | 44.186 | 86 | 39 | 1 | 58 | 134 | 59 | 144 | 3.89e-17 | 77.4 |
| MS.gene59920.t1 | AT2G01818 | 36.471 | 85 | 48 | 2 | 63 | 141 | 6 | 90 | 2.36e-12 | 63.5 |
Find 54 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTTATTGCTATTATTAT+TGG | 0.112766 | 8.1:-10749603 | None:intergenic |
| CCAAGAGAGCAATGGATAAA+AGG | 0.296836 | 8.1:-10748811 | None:intergenic |
| CTTCCAACCATGCAGGCTTT+TGG | 0.312977 | 8.1:-10748285 | None:intergenic |
| TATACAGAAAAGTTCTTTGT+TGG | 0.345795 | 8.1:+10748313 | MS.gene59920:CDS |
| AAGACCTTTCACCCTACTTA+AGG | 0.378382 | 8.1:+10749366 | MS.gene59920:CDS |
| GATCCAATGAGTTCATATTC+AGG | 0.387250 | 8.1:+10749485 | MS.gene59920:CDS |
| TAAAGTTTCTGATGAAGATA+TGG | 0.401550 | 8.1:+10749619 | MS.gene59920:CDS |
| GATAGTCAGGACTTAATTGT+AGG | 0.404339 | 8.1:-10749400 | None:intergenic |
| AGTATGATTAGTAGAAGAAA+AGG | 0.404960 | 8.1:+10749647 | MS.gene59920:CDS |
| AGCAATGGATAAAAGGTTCT+TGG | 0.405041 | 8.1:-10748804 | None:intergenic |
| TTATCATGATGTTCTTAGAT+TGG | 0.410755 | 8.1:+10748465 | MS.gene59920:CDS |
| TTCCTGATCCTTTGAATTGG+CGG | 0.427487 | 8.1:-10748753 | None:intergenic |
| TGGCATGCACAGAAATTGTT+AGG | 0.429624 | 8.1:+10749537 | MS.gene59920:CDS |
| TCATATTCAGGATCATCATC+AGG | 0.433500 | 8.1:+10749497 | MS.gene59920:CDS |
| TCTTGTGGAATTAGATAGTC+AGG | 0.440473 | 8.1:-10749413 | None:intergenic |
| AGTTTCCTGATCCTTTGAAT+TGG | 0.442272 | 8.1:-10748756 | None:intergenic |
| AAGTATGTGTGCAAAATTCA+TGG | 0.453257 | 8.1:+10749580 | MS.gene59920:CDS |
| CTTCTTGATGAACACCACTT+TGG | 0.453482 | 8.1:-10748719 | None:intergenic |
| TTTGGCACTATTGATAGTAT+AGG | 0.459040 | 8.1:-10748701 | None:intergenic |
| AACCGCCAATTCAAAGGATC+AGG | 0.462617 | 8.1:+10748751 | MS.gene59920:CDS |
| GATCCTGAATATGAACTCAT+TGG | 0.472047 | 8.1:-10749488 | None:intergenic |
| AGTCTTCATATATATGATCA+TGG | 0.477545 | 8.1:+10748150 | None:intergenic |
| AAACCAAAAGCCTGCATGGT+TGG | 0.480103 | 8.1:+10748282 | MS.gene59920:CDS |
| GGTCTTGCATATCCTTAAGT+AGG | 0.485067 | 8.1:-10749378 | None:intergenic |
| ATTGTTAGGAAGAGAAGAAG+TGG | 0.501836 | 8.1:+10749551 | MS.gene59920:CDS |
| CCATTGCTCTCTTGGATGCA+AGG | 0.504085 | 8.1:+10748819 | MS.gene59920:CDS |
| CTATCTAATTCCACAAGAGA+TGG | 0.516025 | 8.1:+10749418 | MS.gene59920:CDS |
| TATCTAATTCCACAAGAGAT+GGG | 0.519713 | 8.1:+10749419 | MS.gene59920:CDS |
| AATGACAAGGTCAACAATTG+TGG | 0.532726 | 8.1:+10749454 | MS.gene59920:CDS |
| CCTCAAAACCGCCAATTCAA+AGG | 0.532742 | 8.1:+10748745 | MS.gene59920:CDS |
| GTCTTGCATATCCTTAAGTA+GGG | 0.540564 | 8.1:-10749377 | None:intergenic |
| AGGCGGTGGTAGCGATGAGA+TGG | 0.543611 | 8.1:-10748421 | None:intergenic |
| AATGGATAAAAGGTTCTTGG+AGG | 0.548499 | 8.1:-10748801 | None:intergenic |
| ATAGTCAGGACTTAATTGTA+GGG | 0.550330 | 8.1:-10749399 | None:intergenic |
| TAAAGAGCTTCCAACCATGC+AGG | 0.552228 | 8.1:-10748292 | None:intergenic |
| TAACAAAGAGGAGATCTATG+AGG | 0.552341 | 8.1:-10749674 | None:intergenic |
| TATAGACTGCACCAATGTCC+AGG | 0.557416 | 8.1:+10748504 | MS.gene59920:CDS |
| TACTATCAATAGTGCCAAAG+TGG | 0.558364 | 8.1:+10748705 | MS.gene59920:CDS |
| ATCTAATTCCACAAGAGATG+GGG | 0.572263 | 8.1:+10749420 | MS.gene59920:CDS |
| TTAGGAAGAGAAGAAGTGGA+TGG | 0.575841 | 8.1:+10749555 | MS.gene59920:CDS |
| AGGGAAACCAAAAGCCTGCA+TGG | 0.579853 | 8.1:+10748278 | MS.gene59920:intron |
| CATAACGACGAACTTGAAGA+AGG | 0.581891 | 8.1:-10748441 | None:intergenic |
| AACAAAGAGGAGATCTATGA+GGG | 0.605762 | 8.1:-10749673 | None:intergenic |
| GCTAACACTAATTAACAAAG+AGG | 0.610407 | 8.1:-10749686 | None:intergenic |
| ATATCCTTAAGTAGGGTGAA+AGG | 0.612227 | 8.1:-10749370 | None:intergenic |
| CCTTGCATCCAAGAGAGCAA+TGG | 0.619111 | 8.1:-10748819 | None:intergenic |
| CGATGAGATGGAAAGCAATG+AGG | 0.624526 | 8.1:-10748409 | None:intergenic |
| CATATTCAGGATCATCATCA+GGG | 0.632732 | 8.1:+10749498 | MS.gene59920:CDS |
| AGGGTCAGAGAATATGAGCA+TGG | 0.657131 | 8.1:+10749517 | MS.gene59920:CDS |
| TCTAATTCCACAAGAGATGG+GGG | 0.658047 | 8.1:+10749421 | MS.gene59920:CDS |
| GACGAACTTGAAGAAGGCGG+TGG | 0.658588 | 8.1:-10748435 | None:intergenic |
| ATGTATATGTACCTGGACAT+TGG | 0.663071 | 8.1:-10748515 | None:intergenic |
| GGGATGAATTAGAAATGACA+AGG | 0.706223 | 8.1:+10749441 | MS.gene59920:CDS |
| AACGACGAACTTGAAGAAGG+CGG | 0.734968 | 8.1:-10748438 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTATACATAGTATTA+TGG | + | chr8.1:10748849-10748868 | MS.gene59920:intron | 10.0% |
| !! | CATAAAAAATACTAAAAAAA+AGG | - | chr8.1:10748916-10748935 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTAGTATTTTTTA+TGG | + | chr8.1:10748914-10748933 | MS.gene59920:intron | 10.0% |
| !! | TCAAAATTCTTATATATTGA+TGG | + | chr8.1:10748211-10748230 | MS.gene59920:intron | 15.0% |
| !! | TGAATTACATAAGATTTAAT+TGG | - | chr8.1:10748623-10748642 | None:intergenic | 15.0% |
| !! | TTGGTTAAAATGATTTAATT+TGG | + | chr8.1:10748242-10748261 | MS.gene59920:intron | 15.0% |
| !!! | AACTTTATTGCTATTATTAT+TGG | - | chr8.1:10749606-10749625 | None:intergenic | 15.0% |
| !!! | AATTTGGTAATTGTTAATAT+AGG | + | chr8.1:10748258-10748277 | MS.gene59920:intron | 15.0% |
| !!! | ATTTGGTAATTGTTAATATA+GGG | + | chr8.1:10748259-10748278 | MS.gene59920:intron | 15.0% |
| !!! | TACATATTTTTTTTATGAGA+AGG | - | chr8.1:10749138-10749157 | None:intergenic | 15.0% |
| !!! | TTTTAATTTCTGATTGAAAA+AGG | + | chr8.1:10748655-10748674 | MS.gene59920:intron | 15.0% |
| !! | AAAAAGACTTAAGAAAACAA+AGG | - | chr8.1:10748188-10748207 | None:intergenic | 20.0% |
| !! | AAAAGACTTAAGAAAACAAA+GGG | - | chr8.1:10748187-10748206 | None:intergenic | 20.0% |
| !! | AAATCTTATGTAATTCAACA+TGG | + | chr8.1:10748626-10748645 | MS.gene59920:intron | 20.0% |
| !! | AACTCATTGAATTAAATGAT+TGG | + | chr8.1:10748964-10748983 | MS.gene59920:intron | 20.0% |
| !! | ATGAGCATAAATGAATTTAA+TGG | - | chr8.1:10749206-10749225 | None:intergenic | 20.0% |
| !! | ATGGTTTATACATAGAATTA+TGG | + | chr8.1:10748868-10748887 | MS.gene59920:intron | 20.0% |
| !!! | ATATGCTTAATTTGATCATA+TGG | + | chr8.1:10749303-10749322 | MS.gene59920:intron | 20.0% |
| ! | AATTGAGCACATATATTGAT+TGG | + | chr8.1:10749031-10749050 | MS.gene59920:intron | 25.0% |
| ! | AGTATGATTAGTAGAAGAAA+AGG | + | chr8.1:10749647-10749666 | MS.gene59920:CDS | 25.0% |
| ! | CATATGGAGTATATATTTGT+AGG | + | chr8.1:10749319-10749338 | MS.gene59920:intron | 25.0% |
| ! | TAAAGTTTCTGATGAAGATA+TGG | + | chr8.1:10749619-10749638 | MS.gene59920:CDS | 25.0% |
| ! | TATACAGAAAAGTTCTTTGT+TGG | + | chr8.1:10748313-10748332 | MS.gene59920:CDS | 25.0% |
| ! | TTATCATGATGTTCTTAGAT+TGG | + | chr8.1:10748465-10748484 | MS.gene59920:CDS | 25.0% |
| !! | TTTGAATTATGTTGTTTACC+AGG | + | chr8.1:10748678-10748697 | MS.gene59920:intron | 25.0% |
| !!! | TATATTGATGGCTACAATTT+TGG | + | chr8.1:10748223-10748242 | MS.gene59920:intron | 25.0% |
| AAGTATGTGTGCAAAATTCA+TGG | + | chr8.1:10749580-10749599 | MS.gene59920:CDS | 30.0% | |
| ATAGTCAGGACTTAATTGTA+GGG | - | chr8.1:10749402-10749421 | None:intergenic | 30.0% | |
| ATGGAGTATATATTTGTAGG+TGG | + | chr8.1:10749322-10749341 | MS.gene59920:intron | 30.0% | |
| ATGTGACCGTTATAAATCAA+GGG | + | chr8.1:10749096-10749115 | MS.gene59920:intron | 30.0% | |
| ATTGAACATGTATATGTACC+TGG | - | chr8.1:10748525-10748544 | None:intergenic | 30.0% | |
| TATCTAATTCCACAAGAGAT+GGG | + | chr8.1:10749419-10749438 | MS.gene59920:CDS | 30.0% | |
| TATGTGACCGTTATAAATCA+AGG | + | chr8.1:10749095-10749114 | MS.gene59920:intron | 30.0% | |
| ! | ACAATTTGAAGCACAAGATA+TGG | + | chr8.1:10749243-10749262 | MS.gene59920:intron | 30.0% |
| ! | CAATTTGAAGCACAAGATAT+GGG | + | chr8.1:10749244-10749263 | MS.gene59920:intron | 30.0% |
| ! | TTTGGCACTATTGATAGTAT+AGG | - | chr8.1:10748704-10748723 | None:intergenic | 30.0% |
| !!! | CATTCTTTTTTGCATTCTCA+TGG | - | chr8.1:10748348-10748367 | None:intergenic | 30.0% |
| AACAAAGAGGAGATCTATGA+GGG | - | chr8.1:10749676-10749695 | None:intergenic | 35.0% | |
| AATGACAAGGTCAACAATTG+TGG | + | chr8.1:10749454-10749473 | MS.gene59920:CDS | 35.0% | |
| AATGGATAAAAGGTTCTTGG+AGG | - | chr8.1:10748804-10748823 | None:intergenic | 35.0% | |
| AGCAATGGATAAAAGGTTCT+TGG | - | chr8.1:10748807-10748826 | None:intergenic | 35.0% | |
| AGTTTCCTGATCCTTTGAAT+TGG | - | chr8.1:10748759-10748778 | None:intergenic | 35.0% | |
| ATATCCTTAAGTAGGGTGAA+AGG | - | chr8.1:10749373-10749392 | None:intergenic | 35.0% | |
| ATCTAATTCCACAAGAGATG+GGG | + | chr8.1:10749420-10749439 | MS.gene59920:CDS | 35.0% | |
| ATGTATATGTACCTGGACAT+TGG | - | chr8.1:10748518-10748537 | None:intergenic | 35.0% | |
| ATTGTTAGGAAGAGAAGAAG+TGG | + | chr8.1:10749551-10749570 | MS.gene59920:CDS | 35.0% | |
| CATATTCAGGATCATCATCA+GGG | + | chr8.1:10749498-10749517 | MS.gene59920:CDS | 35.0% | |
| CGGTATCCCTTGATTTATAA+CGG | - | chr8.1:10749105-10749124 | None:intergenic | 35.0% | |
| CTATCTAATTCCACAAGAGA+TGG | + | chr8.1:10749418-10749437 | MS.gene59920:CDS | 35.0% | |
| GATAGTCAGGACTTAATTGT+AGG | - | chr8.1:10749403-10749422 | None:intergenic | 35.0% | |
| GATCCAATGAGTTCATATTC+AGG | + | chr8.1:10749485-10749504 | MS.gene59920:CDS | 35.0% | |
| GATCCTGAATATGAACTCAT+TGG | - | chr8.1:10749491-10749510 | None:intergenic | 35.0% | |
| GGGATGAATTAGAAATGACA+AGG | + | chr8.1:10749441-10749460 | MS.gene59920:CDS | 35.0% | |
| GTCTTGCATATCCTTAAGTA+GGG | - | chr8.1:10749380-10749399 | None:intergenic | 35.0% | |
| TAACAAAGAGGAGATCTATG+AGG | - | chr8.1:10749677-10749696 | None:intergenic | 35.0% | |
| TACTATCAATAGTGCCAAAG+TGG | + | chr8.1:10748705-10748724 | MS.gene59920:CDS | 35.0% | |
| TATGAGAAGGAAACTGAACT+CGG | - | chr8.1:10749125-10749144 | None:intergenic | 35.0% | |
| TCATATTCAGGATCATCATC+AGG | + | chr8.1:10749497-10749516 | MS.gene59920:CDS | 35.0% | |
| TCTTGTGGAATTAGATAGTC+AGG | - | chr8.1:10749416-10749435 | None:intergenic | 35.0% | |
| AAGACCTTTCACCCTACTTA+AGG | + | chr8.1:10749366-10749385 | MS.gene59920:CDS | 40.0% | |
| CATAACGACGAACTTGAAGA+AGG | - | chr8.1:10748444-10748463 | None:intergenic | 40.0% | |
| CCAAGAGAGCAATGGATAAA+AGG | - | chr8.1:10748814-10748833 | None:intergenic | 40.0% | |
| CTTCTTGATGAACACCACTT+TGG | - | chr8.1:10748722-10748741 | None:intergenic | 40.0% | |
| GGTCTTGCATATCCTTAAGT+AGG | - | chr8.1:10749381-10749400 | None:intergenic | 40.0% | |
| TCTAATTCCACAAGAGATGG+GGG | + | chr8.1:10749421-10749440 | MS.gene59920:CDS | 40.0% | |
| TGGCATGCACAGAAATTGTT+AGG | + | chr8.1:10749537-10749556 | MS.gene59920:CDS | 40.0% | |
| TTAGGAAGAGAAGAAGTGGA+TGG | + | chr8.1:10749555-10749574 | MS.gene59920:CDS | 40.0% | |
| TTCCTGATCCTTTGAATTGG+CGG | - | chr8.1:10748756-10748775 | None:intergenic | 40.0% | |
| ! | CACTATTGATAGTATAGGCC+TGG | - | chr8.1:10748699-10748718 | None:intergenic | 40.0% |
| ! | CCTTTTATCCATTGCTCTCT+TGG | + | chr8.1:10748811-10748830 | MS.gene59920:CDS | 40.0% |
| AAACCAAAAGCCTGCATGGT+TGG | + | chr8.1:10748282-10748301 | MS.gene59920:CDS | 45.0% | |
| AACCGCCAATTCAAAGGATC+AGG | + | chr8.1:10748751-10748770 | MS.gene59920:CDS | 45.0% | |
| AACGACGAACTTGAAGAAGG+CGG | - | chr8.1:10748441-10748460 | None:intergenic | 45.0% | |
| AATTCATCCCCCATCTCTTG+TGG | - | chr8.1:10749431-10749450 | None:intergenic | 45.0% | |
| AGGGTCAGAGAATATGAGCA+TGG | + | chr8.1:10749517-10749536 | MS.gene59920:CDS | 45.0% | |
| CCTCAAAACCGCCAATTCAA+AGG | + | chr8.1:10748745-10748764 | MS.gene59920:CDS | 45.0% | |
| CGATGAGATGGAAAGCAATG+AGG | - | chr8.1:10748412-10748431 | None:intergenic | 45.0% | |
| TAAAGAGCTTCCAACCATGC+AGG | - | chr8.1:10748295-10748314 | None:intergenic | 45.0% | |
| TATAGACTGCACCAATGTCC+AGG | + | chr8.1:10748504-10748523 | MS.gene59920:CDS | 45.0% | |
| ! | CCTTTGAATTGGCGGTTTTG+AGG | - | chr8.1:10748748-10748767 | None:intergenic | 45.0% |
| !! | TGAATTTAATTATATAAAAA+AGG | + | chr8.1:10749160-10749179 | MS.gene59920:intron | 5.0% |
| AGGGAAACCAAAAGCCTGCA+TGG | + | chr8.1:10748278-10748297 | MS.gene59920:intron | 50.0% | |
| CCATTGCTCTCTTGGATGCA+AGG | + | chr8.1:10748819-10748838 | MS.gene59920:CDS | 50.0% | |
| CCTTGCATCCAAGAGAGCAA+TGG | - | chr8.1:10748822-10748841 | None:intergenic | 50.0% | |
| ! | CTTCCAACCATGCAGGCTTT+TGG | - | chr8.1:10748288-10748307 | None:intergenic | 50.0% |
| GACGAACTTGAAGAAGGCGG+TGG | - | chr8.1:10748438-10748457 | None:intergenic | 55.0% | |
| ! | AGGCGGTGGTAGCGATGAGA+TGG | - | chr8.1:10748424-10748443 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 10748163 | 10749697 | 10748163 | ID=MS.gene59920 |
| chr8.1 | mRNA | 10748163 | 10749697 | 10748163 | ID=MS.gene59920.t1;Parent=MS.gene59920 |
| chr8.1 | exon | 10748163 | 10748171 | 10748163 | ID=MS.gene59920.t1.exon1;Parent=MS.gene59920.t1 |
| chr8.1 | CDS | 10748163 | 10748171 | 10748163 | ID=cds.MS.gene59920.t1;Parent=MS.gene59920.t1 |
| chr8.1 | exon | 10748280 | 10748525 | 10748280 | ID=MS.gene59920.t1.exon2;Parent=MS.gene59920.t1 |
| chr8.1 | CDS | 10748280 | 10748525 | 10748280 | ID=cds.MS.gene59920.t1;Parent=MS.gene59920.t1 |
| chr8.1 | exon | 10748700 | 10748840 | 10748700 | ID=MS.gene59920.t1.exon3;Parent=MS.gene59920.t1 |
| chr8.1 | CDS | 10748700 | 10748840 | 10748700 | ID=cds.MS.gene59920.t1;Parent=MS.gene59920.t1 |
| chr8.1 | exon | 10749341 | 10749697 | 10749341 | ID=MS.gene59920.t1.exon4;Parent=MS.gene59920.t1 |
| chr8.1 | CDS | 10749341 | 10749697 | 10749341 | ID=cds.MS.gene59920.t1;Parent=MS.gene59920.t1 |
| Gene Sequence |
| Protein sequence |
