Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67145.t1 | XP_003589171.1 | 95.5 | 471 | 21 | 0 | 1 | 471 | 1 | 471 | 7.40E-268 | 932.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67145.t1 | P19515 | 29.1 | 175 | 95 | 6 | 186 | 358 | 156 | 303 | 1.4e-09 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67145.t1 | G7I3I7 | 95.5 | 471 | 21 | 0 | 1 | 471 | 1 | 471 | 5.3e-268 | 932.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene67145 | -0.838767 | 2.36E-57 | -1.69E-46 |
| MS.gene049217 | MS.gene67145 | -0.824008 | 1.02E-53 | -1.69E-46 |
| MS.gene049222 | MS.gene67145 | -0.839693 | 1.36E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene67145 | -0.815102 | 1.10E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene67145 | -0.822328 | 2.51E-53 | -1.69E-46 |
| MS.gene049402 | MS.gene67145 | 0.8315 | 1.61E-55 | -1.69E-46 |
| MS.gene049611 | MS.gene67145 | 0.837233 | 5.86E-57 | -1.69E-46 |
| MS.gene049633 | MS.gene67145 | -0.806797 | 6.91E-50 | -1.69E-46 |
| MS.gene049634 | MS.gene67145 | 0.847656 | 1.01E-59 | -1.69E-46 |
| MS.gene050163 | MS.gene67145 | -0.825312 | 5.02E-54 | -1.69E-46 |
| MS.gene050165 | MS.gene67145 | -0.834536 | 2.83E-56 | -1.69E-46 |
| MS.gene050170 | MS.gene67145 | -0.803604 | 3.22E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene67145 | -0.811965 | 5.38E-51 | -1.69E-46 |
| MS.gene050381 | MS.gene67145 | 0.806216 | 9.16E-50 | -1.69E-46 |
| MS.gene050444 | MS.gene67145 | -0.835654 | 1.48E-56 | -1.69E-46 |
| MS.gene050496 | MS.gene67145 | -0.803167 | 3.97E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene67145 | -0.854271 | 1.38E-61 | -1.69E-46 |
| MS.gene050577 | MS.gene67145 | -0.82162 | 3.67E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene67145 | -0.844436 | 7.57E-59 | -1.69E-46 |
| MS.gene050675 | MS.gene67145 | -0.819672 | 1.03E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene67145 | -0.815225 | 1.03E-51 | -1.69E-46 |
| MS.gene050720 | MS.gene67145 | 0.811772 | 5.92E-51 | -1.69E-46 |
| MS.gene050725 | MS.gene67145 | 0.802911 | 4.48E-49 | -1.69E-46 |
| MS.gene05079 | MS.gene67145 | 0.828249 | 9.99E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene67145 | -0.805634 | 1.21E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene67145 | -0.856109 | 4.02E-62 | -1.69E-46 |
| MS.gene050871 | MS.gene67145 | -0.853127 | 2.94E-61 | -1.69E-46 |
| MS.gene050904 | MS.gene67145 | -0.833534 | 5.05E-56 | -1.69E-46 |
| MS.gene050986 | MS.gene67145 | -0.816454 | 5.49E-52 | -1.69E-46 |
| MS.gene051044 | MS.gene67145 | 0.812899 | 3.36E-51 | -1.69E-46 |
| MS.gene05104 | MS.gene67145 | 0.820382 | 7.06E-53 | -1.69E-46 |
| MS.gene051127 | MS.gene67145 | 0.819641 | 1.04E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene67145 | 0.866919 | 2.00E-65 | -1.69E-46 |
| MS.gene051268 | MS.gene67145 | -0.802541 | 5.34E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene67145 | -0.829865 | 4.05E-55 | -1.69E-46 |
| MS.gene051364 | MS.gene67145 | 0.820234 | 7.64E-53 | -1.69E-46 |
| MS.gene051366 | MS.gene67145 | 0.810544 | 1.09E-50 | -1.69E-46 |
| MS.gene051651 | MS.gene67145 | 0.817688 | 2.90E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene67145 | -0.801196 | 1.01E-48 | -1.69E-46 |
| MS.gene051946 | MS.gene67145 | 0.821259 | 4.44E-53 | -1.69E-46 |
| MS.gene051973 | MS.gene67145 | 0.827753 | 1.31E-54 | -1.69E-46 |
| MS.gene052015 | MS.gene67145 | 0.815765 | 7.82E-52 | -1.69E-46 |
| MS.gene052129 | MS.gene67145 | 0.810428 | 1.16E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene67145 | -0.811501 | 6.78E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene67145 | -0.804965 | 1.68E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene67145 | 0.8069 | 6.57E-50 | -1.69E-46 |
| MS.gene052606 | MS.gene67145 | 0.822652 | 2.11E-53 | -1.69E-46 |
| MS.gene052802 | MS.gene67145 | 0.832934 | 7.12E-56 | -1.69E-46 |
| MS.gene052825 | MS.gene67145 | -0.803152 | 4.00E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene67145 | -0.82067 | 6.07E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene67145 | -0.824768 | 6.75E-54 | -1.69E-46 |
| MS.gene053420 | MS.gene67145 | 0.839031 | 2.02E-57 | -1.69E-46 |
| MS.gene053421 | MS.gene67145 | 0.827183 | 1.80E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene67145 | -0.818521 | 1.88E-52 | -1.69E-46 |
| MS.gene053488 | MS.gene67145 | 0.800293 | 1.54E-48 | -1.69E-46 |
| MS.gene053632 | MS.gene67145 | -0.804345 | 2.26E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene67145 | -0.803682 | 3.10E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene67145 | 0.804673 | 1.93E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene67145 | 0.824257 | 8.90E-54 | -1.69E-46 |
| MS.gene054707 | MS.gene67145 | 0.811967 | 5.37E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene67145 | -0.851574 | 8.12E-61 | -1.69E-46 |
| MS.gene054954 | MS.gene67145 | -0.811138 | 8.13E-51 | -1.69E-46 |
| MS.gene055154 | MS.gene67145 | 0.801235 | 9.91E-49 | -1.69E-46 |
| MS.gene055202 | MS.gene67145 | 0.817741 | 2.82E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene67145 | -0.822464 | 2.34E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene67145 | -0.85067 | 1.46E-60 | -1.69E-46 |
| MS.gene055577 | MS.gene67145 | -0.849843 | 2.49E-60 | -1.69E-46 |
| MS.gene055748 | MS.gene67145 | -0.843245 | 1.58E-58 | -1.69E-46 |
| MS.gene055750 | MS.gene67145 | -0.80939 | 1.94E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene67145 | -0.841656 | 4.16E-58 | -1.69E-46 |
| MS.gene05589 | MS.gene67145 | -0.853558 | 2.21E-61 | -1.69E-46 |
| MS.gene055941 | MS.gene67145 | -0.800408 | 1.46E-48 | -1.69E-46 |
| MS.gene056198 | MS.gene67145 | 0.809415 | 1.91E-50 | -1.69E-46 |
| MS.gene056224 | MS.gene67145 | 0.817919 | 2.57E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene67145 | -0.81335 | 2.68E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene67145 | -0.840343 | 9.21E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene67145 | -0.814261 | 1.69E-51 | -1.69E-46 |
| MS.gene056550 | MS.gene67145 | 0.811287 | 7.55E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene67145 | -0.807827 | 4.18E-50 | -1.69E-46 |
| MS.gene056678 | MS.gene67145 | 0.807922 | 3.99E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene67145 | -0.80354 | 3.32E-49 | -1.69E-46 |
| MS.gene056748 | MS.gene67145 | 0.801113 | 1.05E-48 | -1.69E-46 |
| MS.gene056856 | MS.gene67145 | 0.830624 | 2.64E-55 | -1.69E-46 |
| MS.gene056857 | MS.gene67145 | 0.800682 | 1.29E-48 | -1.69E-46 |
| MS.gene056988 | MS.gene67145 | 0.821714 | 3.49E-53 | -1.69E-46 |
| MS.gene057014 | MS.gene67145 | 0.833261 | 5.90E-56 | -1.69E-46 |
| MS.gene057658 | MS.gene67145 | -0.808676 | 2.76E-50 | -1.69E-46 |
| MS.gene057717 | MS.gene67145 | 0.807328 | 5.33E-50 | -1.69E-46 |
| MS.gene057768 | MS.gene67145 | 0.832192 | 1.09E-55 | -1.69E-46 |
| MS.gene057831 | MS.gene67145 | -0.820015 | 8.58E-53 | -1.69E-46 |
| MS.gene058117 | MS.gene67145 | 0.819784 | 9.69E-53 | -1.69E-46 |
| MS.gene058158 | MS.gene67145 | 0.807056 | 6.09E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene67145 | 0.845593 | 3.69E-59 | -1.69E-46 |
| MS.gene058173 | MS.gene67145 | 0.832389 | 9.72E-56 | -1.69E-46 |
| MS.gene058175 | MS.gene67145 | 0.850857 | 1.29E-60 | -1.69E-46 |
| MS.gene058334 | MS.gene67145 | 0.826678 | 2.38E-54 | -1.69E-46 |
| MS.gene05837 | MS.gene67145 | -0.829556 | 4.82E-55 | -1.69E-46 |
| MS.gene058418 | MS.gene67145 | 0.802268 | 6.08E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene67145 | -0.809867 | 1.53E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene67145 | -0.832803 | 7.67E-56 | -1.69E-46 |
| MS.gene058603 | MS.gene67145 | 0.862487 | 4.90E-64 | -1.69E-46 |
| MS.gene058773 | MS.gene67145 | -0.840323 | 9.32E-58 | -1.69E-46 |
| MS.gene058838 | MS.gene67145 | -0.81037 | 1.19E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene67145 | -0.848106 | 7.57E-60 | -1.69E-46 |
| MS.gene059023 | MS.gene67145 | -0.845996 | 2.87E-59 | -1.69E-46 |
| MS.gene059102 | MS.gene67145 | 0.805724 | 1.16E-49 | -1.69E-46 |
| MS.gene05914 | MS.gene67145 | -0.844445 | 7.53E-59 | -1.69E-46 |
| MS.gene059223 | MS.gene67145 | 0.807878 | 4.08E-50 | -1.69E-46 |
| MS.gene059479 | MS.gene67145 | 0.802152 | 6.43E-49 | -1.69E-46 |
| MS.gene059526 | MS.gene67145 | 0.808518 | 2.98E-50 | -1.69E-46 |
| MS.gene05960 | MS.gene67145 | 0.83405 | 3.75E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene67145 | -0.838849 | 2.25E-57 | -1.69E-46 |
| MS.gene059718 | MS.gene67145 | -0.810131 | 1.34E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene67145 | -0.827185 | 1.80E-54 | -1.69E-46 |
| MS.gene059916 | MS.gene67145 | 0.804718 | 1.89E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene67145 | -0.813303 | 2.74E-51 | -1.69E-46 |
| MS.gene060602 | MS.gene67145 | 0.816965 | 4.21E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene67145 | -0.859378 | 4.31E-63 | -1.69E-46 |
| MS.gene06077 | MS.gene67145 | -0.842999 | 1.83E-58 | -1.69E-46 |
| MS.gene060823 | MS.gene67145 | 0.810056 | 1.39E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene67145 | -0.824281 | 8.79E-54 | -1.69E-46 |
| MS.gene061044 | MS.gene67145 | 0.81433 | 1.63E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene67145 | -0.805363 | 1.38E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67145.t1 | MTR_1g019270 | 95.541 | 471 | 21 | 0 | 1 | 471 | 1 | 471 | 0.0 | 932 |
| MS.gene67145.t1 | MTR_5g017260 | 49.342 | 456 | 228 | 3 | 11 | 464 | 13 | 467 | 2.53e-162 | 467 |
| MS.gene67145.t1 | MTR_3g086880 | 43.074 | 462 | 213 | 7 | 11 | 457 | 13 | 439 | 3.91e-121 | 361 |
| MS.gene67145.t1 | MTR_7g117505 | 40.702 | 484 | 249 | 5 | 11 | 457 | 8 | 490 | 4.33e-121 | 363 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67145.t1 | AT5G42930 | 54.428 | 463 | 202 | 4 | 10 | 464 | 6 | 467 | 0.0 | 537 |
| MS.gene67145.t1 | AT1G56630 | 53.863 | 466 | 196 | 6 | 10 | 457 | 6 | 470 | 1.39e-176 | 504 |
| MS.gene67145.t1 | AT1G45201 | 50.216 | 462 | 222 | 5 | 3 | 459 | 4 | 462 | 7.24e-160 | 461 |
| MS.gene67145.t1 | AT1G45201 | 50.216 | 462 | 222 | 5 | 3 | 459 | 29 | 487 | 1.39e-159 | 461 |
| MS.gene67145.t1 | AT5G42930 | 53.543 | 381 | 169 | 3 | 10 | 383 | 6 | 385 | 4.61e-150 | 434 |
| MS.gene67145.t1 | AT5G67050 | 47.033 | 455 | 227 | 7 | 11 | 456 | 13 | 462 | 1.10e-147 | 430 |
| MS.gene67145.t1 | AT1G45201 | 49.482 | 386 | 187 | 5 | 3 | 383 | 4 | 386 | 1.22e-126 | 373 |
| MS.gene67145.t1 | AT3G14360 | 38.076 | 499 | 266 | 7 | 2 | 457 | 10 | 508 | 1.46e-122 | 367 |
| MS.gene67145.t1 | AT5G18640 | 27.059 | 170 | 85 | 6 | 199 | 358 | 98 | 238 | 2.28e-11 | 65.1 |
| MS.gene67145.t1 | AT5G18640 | 27.059 | 170 | 85 | 6 | 199 | 358 | 98 | 238 | 2.80e-11 | 65.5 |
| MS.gene67145.t1 | AT5G18640 | 27.059 | 170 | 85 | 6 | 199 | 358 | 98 | 238 | 2.80e-11 | 65.5 |
| MS.gene67145.t1 | AT5G18640 | 27.059 | 170 | 85 | 6 | 199 | 358 | 110 | 250 | 3.06e-11 | 65.5 |
| MS.gene67145.t1 | AT5G18640 | 27.059 | 170 | 85 | 6 | 199 | 358 | 110 | 250 | 3.06e-11 | 65.5 |
Find 105 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCCTTCTTGAAAATTAT+TGG | 0.135024 | 1.3:-4201970 | MS.gene67145:CDS |
| CTCTTCTTCAACTTTCTTAA+AGG | 0.156900 | 1.3:-4201892 | MS.gene67145:intron |
| GCAATGCAGTTAGAAATAAT+TGG | 0.189881 | 1.3:-4201561 | MS.gene67145:CDS |
| CAAACTGCGTTTAAGATCTT+TGG | 0.213583 | 1.3:+4199148 | None:intergenic |
| GATGCAAAATTCATATTAAC+AGG | 0.242406 | 1.3:-4199619 | MS.gene67145:CDS |
| AGAACTATTTCTCTTTGTTC+TGG | 0.244149 | 1.3:-4199177 | MS.gene67145:CDS |
| CAAAGATCTTAAACGCAGTT+TGG | 0.279408 | 1.3:-4199147 | MS.gene67145:CDS |
| AGAAATGTTGAAGGAAAATA+AGG | 0.289378 | 1.3:-4199641 | MS.gene67145:CDS |
| TTAGAAGGTGTTTATACATT+TGG | 0.293212 | 1.3:-4199517 | MS.gene67145:CDS |
| CTTGTTGGATTGATAATTCC+AGG | 0.293883 | 1.3:-4199046 | MS.gene67145:CDS |
| CATATTAACAGGGCATAGTT+TGG | 0.299211 | 1.3:-4199608 | MS.gene67145:CDS |
| TTCCTTCTACCATTTGTTAT+AGG | 0.311769 | 1.3:-4199109 | MS.gene67145:CDS |
| ATATGTTTACTCCAATGATA+TGG | 0.321173 | 1.3:-4199416 | MS.gene67145:CDS |
| TAGAAGGTGTTTATACATTT+GGG | 0.324429 | 1.3:-4199516 | MS.gene67145:CDS |
| AAAGAGAAATAGTTCTTGTT+TGG | 0.329154 | 1.3:+4199184 | None:intergenic |
| AGAGTTGGAGACGAGAAGTT+TGG | 0.331097 | 1.3:-4199487 | MS.gene67145:CDS |
| CAATGCAGTTAGAAATAATT+GGG | 0.335327 | 1.3:-4201560 | MS.gene67145:CDS |
| CTTCTTTCATCAATTTCTTT+AGG | 0.343200 | 1.3:+4199706 | None:intergenic |
| TTGATTGTGGTTGCATTTAG+AGG | 0.348509 | 1.3:-4199856 | MS.gene67145:CDS |
| ATCTCCATGTATTTGTTGTT+CGG | 0.358677 | 1.3:+4202170 | None:intergenic |
| ATGGCATTGTTCAGGCTTGT+TGG | 0.361487 | 1.3:-4199061 | MS.gene67145:CDS |
| ATTGGTTCATGGCATTGTTC+AGG | 0.361946 | 1.3:-4199069 | MS.gene67145:CDS |
| GAACTATTTCTCTTTGTTCT+GGG | 0.395273 | 1.3:-4199176 | MS.gene67145:CDS |
| GGTGGGTTCATGAAAGCTTT+GGG | 0.397170 | 1.3:-4199751 | MS.gene67145:CDS |
| GCAGTTTGGGAGGTGATTAG+AGG | 0.398304 | 1.3:-4199133 | MS.gene67145:CDS |
| AAAGATCTTAAACGCAGTTT+GGG | 0.404490 | 1.3:-4199146 | MS.gene67145:CDS |
| TTCTTGCCTCAAGTCCTTGT+GGG | 0.405312 | 1.3:+4202055 | None:intergenic |
| TCAAGTAATGGAGGGCTCAT+TGG | 0.410377 | 1.3:-4201916 | MS.gene67145:CDS |
| GTCGTCGGCGGAGTTCTTAT+CGG | 0.410892 | 1.3:-4201707 | MS.gene67145:CDS |
| AAGAGGGATTTGTCATCATA+AGG | 0.413128 | 1.3:+4199382 | None:intergenic |
| TACCTATAACAAATGGTAGA+AGG | 0.413520 | 1.3:+4199107 | None:intergenic |
| TTGGAGACATGTTGGAGTCT+TGG | 0.414649 | 1.3:-4201951 | MS.gene67145:CDS |
| ATATTAACAGGGCATAGTTT+GGG | 0.421807 | 1.3:-4199607 | MS.gene67145:CDS |
| GTAAAGAGTATAAACAGAAT+TGG | 0.425012 | 1.3:-4199087 | MS.gene67145:CDS |
| AATGCAACCACAATCAAGTT+TGG | 0.425076 | 1.3:+4199862 | None:intergenic |
| CTTAATTGTTTATCAAGTAA+TGG | 0.429403 | 1.3:-4201928 | MS.gene67145:CDS |
| CCGTTGTTAGATCAGTTAGA+AGG | 0.435975 | 1.3:-4199532 | MS.gene67145:CDS |
| AACTTCTCGTCTCCAACTCT+TGG | 0.437079 | 1.3:+4199490 | None:intergenic |
| TTCCATTGCACAGCGTCAAA+TGG | 0.446017 | 1.3:+4199826 | None:intergenic |
| CCATGCATCTTACCCACGTT+TGG | 0.451550 | 1.3:+4199772 | None:intergenic |
| GCATAGACATTAGTCATCCT+TGG | 0.456552 | 1.3:+4198943 | None:intergenic |
| CAAGAAAATTTCGACAAAGA+TGG | 0.458817 | 1.3:-4202038 | MS.gene67145:CDS |
| TGGTGGGTTCATGAAAGCTT+TGG | 0.466070 | 1.3:-4199752 | MS.gene67145:CDS |
| GTGAAATGAGCTGGTAGTCC+TGG | 0.467415 | 1.3:+4199028 | None:intergenic |
| TACTCTTTACCTATAACAAA+TGG | 0.472622 | 1.3:+4199100 | None:intergenic |
| GAAAATTATTGGAGACATGT+TGG | 0.474385 | 1.3:-4201959 | MS.gene67145:CDS |
| GTATAAACAGAATTGGTTCA+TGG | 0.475060 | 1.3:-4199080 | MS.gene67145:CDS |
| TTGTCATCATAAGGGATCCT+AGG | 0.481249 | 1.3:+4199391 | None:intergenic |
| GCATAGTTTGGGTGGAGCAT+TGG | 0.487894 | 1.3:-4199596 | MS.gene67145:CDS |
| GATCCTAGGAACCATATCAT+TGG | 0.488876 | 1.3:+4199405 | None:intergenic |
| CGTAGTAAGCATATTGATGC+TGG | 0.489114 | 1.3:+4199683 | None:intergenic |
| AAAGCAAGTGTTGTGGAACT+AGG | 0.494529 | 1.3:-4202126 | MS.gene67145:CDS |
| ACTCCAATGATATGGTTCCT+AGG | 0.497236 | 1.3:-4199408 | MS.gene67145:CDS |
| ATAAGGATGTAAAGTACAAA+GGG | 0.499364 | 1.3:-4201636 | MS.gene67145:CDS |
| GCAACTGAGAGAAATGTTGA+AGG | 0.501125 | 1.3:-4199650 | MS.gene67145:CDS |
| GTAGATTTCATACCTGCCCT+TGG | 0.504655 | 1.3:+4199317 | None:intergenic |
| CTCCATTTGACGCTGTGCAA+TGG | 0.504884 | 1.3:-4199828 | MS.gene67145:CDS |
| AGCTTCATTGATTGCCCACA+AGG | 0.512388 | 1.3:-4202069 | MS.gene67145:CDS |
| GCGGAGTTCTTATCGGTGGT+TGG | 0.517251 | 1.3:-4201700 | MS.gene67145:CDS |
| AGAGGGATTTGTCATCATAA+GGG | 0.519798 | 1.3:+4199383 | None:intergenic |
| CAAAGGGTTACTATCTATCA+TGG | 0.525614 | 1.3:-4201620 | MS.gene67145:CDS |
| AATCAAGTTTGGCTCAGACT+TGG | 0.525772 | 1.3:+4199873 | None:intergenic |
| ACATTTGGGCAACCAAGAGT+TGG | 0.528038 | 1.3:-4199502 | MS.gene67145:CDS |
| AAACAGACGTTGATATCTCC+TGG | 0.531593 | 1.3:-4199804 | MS.gene67145:CDS |
| TTATGTCAATGCTACCCGAC+TGG | 0.531631 | 1.3:-4198999 | MS.gene67145:CDS |
| CATAAGGATGTAAAGTACAA+AGG | 0.532579 | 1.3:-4201637 | MS.gene67145:CDS |
| CAACAGCTTGTACCAAGGGC+AGG | 0.538318 | 1.3:-4199329 | MS.gene67145:intron |
| GACTGAAGTGCTTAAAGAAG+AGG | 0.539336 | 1.3:+4199365 | None:intergenic |
| TTTCTTGCCTCAAGTCCTTG+TGG | 0.545498 | 1.3:+4202054 | None:intergenic |
| CACGTTTGGTAGGTCATACC+AGG | 0.546792 | 1.3:+4199786 | None:intergenic |
| CTAAGTTTGATGAAAACAAG+AGG | 0.547488 | 1.3:+4202100 | None:intergenic |
| AATTGTTTATCAAGTAATGG+AGG | 0.560190 | 1.3:-4201925 | MS.gene67145:CDS |
| TGAAATCCAGATTCTGGAGG+AGG | 0.561254 | 1.3:-4199209 | MS.gene67145:intron |
| TAATCTGCAGTGAAATGAGC+TGG | 0.562925 | 1.3:+4199019 | None:intergenic |
| ATTGTTTATCAAGTAATGGA+GGG | 0.563370 | 1.3:-4201924 | MS.gene67145:CDS |
| CCTAGAGCTTCTAATTTCCA+AGG | 0.565181 | 1.3:-4198960 | MS.gene67145:CDS |
| CTGGTATGACCTACCAAACG+TGG | 0.574732 | 1.3:-4199785 | MS.gene67145:CDS |
| CCTTGGAAATTAGAAGCTCT+AGG | 0.576959 | 1.3:+4198960 | None:intergenic |
| TGATTGCCCACAAGGACTTG+AGG | 0.576965 | 1.3:-4202061 | MS.gene67145:CDS |
| TATGTCAATGCTACCCGACT+GGG | 0.579643 | 1.3:-4198998 | MS.gene67145:CDS |
| GATCTTAAACGCAGTTTGGG+AGG | 0.582036 | 1.3:-4199143 | MS.gene67145:CDS |
| ACTGAAGTGCTTAAAGAAGA+GGG | 0.583297 | 1.3:+4199366 | None:intergenic |
| GCATCTTACCCACGTTTGGT+AGG | 0.584299 | 1.3:+4199776 | None:intergenic |
| CTAAATCAACTCTTGTGTCA+AGG | 0.587660 | 1.3:+4201674 | None:intergenic |
| ATGGAGATTATCTATTTCTG+AGG | 0.588396 | 1.3:-4202155 | MS.gene67145:CDS |
| GACTATTAGAGAACGGTGGA+TGG | 0.590336 | 1.3:-4199729 | MS.gene67145:CDS |
| GGTTCCGAACAACAAATACA+TGG | 0.590798 | 1.3:-4202174 | MS.gene67145:CDS |
| TTTGTCTAAGAATCCCAGTC+GGG | 0.593613 | 1.3:+4198985 | None:intergenic |
| TTAACAGGGCATAGTTTGGG+TGG | 0.601661 | 1.3:-4199604 | MS.gene67145:CDS |
| GTCGGCGGAGTTCTTATCGG+TGG | 0.625309 | 1.3:-4201704 | MS.gene67145:CDS |
| CCAAACGTGGGTAAGATGCA+TGG | 0.629496 | 1.3:-4199772 | MS.gene67145:CDS |
| GCTTTGGGACTATTAGAGAA+CGG | 0.641017 | 1.3:-4199736 | MS.gene67145:CDS |
| ACGTGGGTAAGATGCATGGT+GGG | 0.641063 | 1.3:-4199768 | MS.gene67145:CDS |
| GTCTGAGCCAAACTTGATTG+TGG | 0.648999 | 1.3:-4199869 | MS.gene67145:CDS |
| GTTTGTCTAAGAATCCCAGT+CGG | 0.657643 | 1.3:+4198984 | None:intergenic |
| TATTGAAATCCAGATTCTGG+AGG | 0.663481 | 1.3:-4199212 | MS.gene67145:intron |
| AATGCAGTTAGAAATAATTG+GGG | 0.668177 | 1.3:-4201559 | MS.gene67145:CDS |
| AACGTGGGTAAGATGCATGG+TGG | 0.670345 | 1.3:-4199769 | MS.gene67145:CDS |
| CCTTCTAACTGATCTAACAA+CGG | 0.677853 | 1.3:+4199532 | None:intergenic |
| GATAACACCGGAAAAGTCGT+CGG | 0.682426 | 1.3:-4201722 | MS.gene67145:CDS |
| TGCAGGAGAGGTGATAACAC+CGG | 0.684829 | 1.3:-4201734 | MS.gene67145:intron |
| TTGGGACTATTAGAGAACGG+TGG | 0.689567 | 1.3:-4199733 | MS.gene67145:CDS |
| ATGCAAAATTCATATTAACA+GGG | 0.695453 | 1.3:-4199618 | MS.gene67145:CDS |
| TGGTATGACCTACCAAACGT+GGG | 0.704433 | 1.3:-4199784 | MS.gene67145:CDS |
| AACACCGGAAAAGTCGTCGG+CGG | 0.722840 | 1.3:-4201719 | MS.gene67145:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGGTTAAATTAAAATATA+AGG | + | chr1.3:4200843-4200862 | None:intergenic | 10.0% |
| !!! | ATTTAATAGTTTTATGTTAT+GGG | + | chr1.3:4200649-4200668 | None:intergenic | 10.0% |
| !!! | ATTTTAATTTAACCTTAATT+GGG | - | chr1.3:4200846-4200865 | MS.gene67145:intron | 10.0% |
| !!! | TAATAAGTTTAATTTTTTTG+AGG | - | chr1.3:4199861-4199880 | MS.gene67145:CDS | 10.0% |
| !!! | TATTTAATAGTTTTATGTTA+TGG | + | chr1.3:4200650-4200669 | None:intergenic | 10.0% |
| !!! | TATTTTAATTTAACCTTAAT+TGG | - | chr1.3:4200845-4200864 | MS.gene67145:intron | 10.0% |
| !! | ATTTACTCTAAATAAAACTA+TGG | + | chr1.3:4199657-4199676 | None:intergenic | 15.0% |
| !! | ATTTCTCTAATTTAAATGAA+GGG | - | chr1.3:4201013-4201032 | MS.gene67145:intron | 15.0% |
| !!! | AATTATATATTGCATTTTGA+AGG | - | chr1.3:4199966-4199985 | MS.gene67145:intron | 15.0% |
| !!! | ATTTTATCATTTGAAAATCA+TGG | + | chr1.3:4201115-4201134 | None:intergenic | 15.0% |
| !!! | GATTTTCAAATGATAAAATT+GGG | - | chr1.3:4201116-4201135 | MS.gene67145:intron | 15.0% |
| !!! | GTTTACATGAATTTAAATTT+TGG | - | chr1.3:4199369-4199388 | MS.gene67145:CDS | 15.0% |
| !!! | TGATTTTCAAATGATAAAAT+TGG | - | chr1.3:4201115-4201134 | MS.gene67145:intron | 15.0% |
| !!! | TTATAATTTTTTTATGTCGA+AGG | - | chr1.3:4200440-4200459 | MS.gene67145:intron | 15.0% |
| !! | AGACAAAAATATTCATCATA+AGG | - | chr1.3:4199476-4199495 | MS.gene67145:CDS | 20.0% |
| !! | ATGCAAAATTCATATTAACA+GGG | - | chr1.3:4201511-4201530 | MS.gene67145:intron | 20.0% |
| !! | CATTTCTCTAATTTAAATGA+AGG | - | chr1.3:4201012-4201031 | MS.gene67145:intron | 20.0% |
| !! | CTTAATTGTTTATCAAGTAA+TGG | - | chr1.3:4199201-4199220 | MS.gene67145:CDS | 20.0% |
| !! | GTATATCTTACAAATTATGA+AGG | + | chr1.3:4199788-4199807 | None:intergenic | 20.0% |
| !! | GTGTTTATAATATTATTGAC+AGG | - | chr1.3:4200671-4200690 | MS.gene67145:intron | 20.0% |
| !! | TCAATATATAACACTTATTG+TGG | - | chr1.3:4200492-4200511 | MS.gene67145:intron | 20.0% |
| !!! | AAAATATGGCATTTTTTTAG+TGG | - | chr1.3:4200467-4200486 | MS.gene67145:intron | 20.0% |
| !!! | GGAAAAATTCTAAAATTATG+AGG | + | chr1.3:4200224-4200243 | None:intergenic | 20.0% |
| !!! | TACATGAATTTAAATTTTGG+TGG | - | chr1.3:4199372-4199391 | MS.gene67145:CDS | 20.0% |
| ! | AAAGAGAAATAGTTCTTGTT+TGG | + | chr1.3:4201948-4201967 | None:intergenic | 25.0% |
| ! | AAATGTTAAAGAATGTCCTT+AGG | + | chr1.3:4200997-4201016 | None:intergenic | 25.0% |
| ! | AATGATAAAATTGGGATATC+TGG | - | chr1.3:4201124-4201143 | MS.gene67145:intron | 25.0% |
| ! | AATGCAGTTAGAAATAATTG+GGG | - | chr1.3:4199570-4199589 | MS.gene67145:CDS | 25.0% |
| ! | AATGTTAAAGAATGTCCTTA+GGG | + | chr1.3:4200996-4201015 | None:intergenic | 25.0% |
| ! | AATTGTTTATCAAGTAATGG+AGG | - | chr1.3:4199204-4199223 | MS.gene67145:intron | 25.0% |
| ! | AGAAATGTTGAAGGAAAATA+AGG | - | chr1.3:4201488-4201507 | MS.gene67145:intron | 25.0% |
| ! | ATAAGGATGTAAAGTACAAA+GGG | - | chr1.3:4199493-4199512 | MS.gene67145:CDS | 25.0% |
| ! | ATATGTTTACTCCAATGATA+TGG | - | chr1.3:4201713-4201732 | MS.gene67145:CDS | 25.0% |
| ! | ATCATTTGAAAATCATGGAA+GGG | + | chr1.3:4201110-4201129 | None:intergenic | 25.0% |
| ! | ATCTTACAAATTATGAAGGA+TGG | + | chr1.3:4199784-4199803 | None:intergenic | 25.0% |
| ! | ATGTCGAAGGAAAAAAAATA+TGG | - | chr1.3:4200453-4200472 | MS.gene67145:intron | 25.0% |
| ! | CAATGCAGTTAGAAATAATT+GGG | - | chr1.3:4199569-4199588 | MS.gene67145:CDS | 25.0% |
| ! | CTTCTTTCATCAATTTCTTT+AGG | + | chr1.3:4201426-4201445 | None:intergenic | 25.0% |
| ! | GATGCAAAATTCATATTAAC+AGG | - | chr1.3:4201510-4201529 | MS.gene67145:intron | 25.0% |
| ! | TAAAATATAAGGTCAATGAG+AGG | + | chr1.3:4200832-4200851 | None:intergenic | 25.0% |
| ! | TACTCTTTACCTATAACAAA+TGG | + | chr1.3:4202032-4202051 | None:intergenic | 25.0% |
| ! | TATAAACTAAACATGTCACA+CGG | + | chr1.3:4200785-4200804 | None:intergenic | 25.0% |
| ! | TATCATTTGAAAATCATGGA+AGG | + | chr1.3:4201111-4201130 | None:intergenic | 25.0% |
| ! | TGAAAAAGTCAAATATGTGT+AGG | + | chr1.3:4200706-4200725 | None:intergenic | 25.0% |
| ! | TGATTATTTACCAATCAACT+TGG | - | chr1.3:4199686-4199705 | MS.gene67145:CDS | 25.0% |
| ! | TTAGAATGTGAATATGATGA+TGG | + | chr1.3:4200257-4200276 | None:intergenic | 25.0% |
| ! | TTTATCTTATTGTTTGCAGA+TGG | - | chr1.3:4199710-4199729 | MS.gene67145:CDS | 25.0% |
| ! | TTTCCATCAATGTAAATGTT+AGG | + | chr1.3:4200135-4200154 | None:intergenic | 25.0% |
| !! | ATTGTTTATCAAGTAATGGA+GGG | - | chr1.3:4199205-4199224 | MS.gene67145:intron | 25.0% |
| !! | GTAAAGAGTATAAACAGAAT+TGG | - | chr1.3:4202042-4202061 | MS.gene67145:CDS | 25.0% |
| !!! | TAAGATAAAACCAAGTTGAT+TGG | + | chr1.3:4199699-4199718 | None:intergenic | 25.0% |
| !!! | TAGAAGGTGTTTATACATTT+GGG | - | chr1.3:4201613-4201632 | MS.gene67145:CDS | 25.0% |
| !!! | TATGATGATGGCAAATTATA+TGG | + | chr1.3:4200245-4200264 | None:intergenic | 25.0% |
| !!! | TATTTTTCCTTTCAAGTTGA+TGG | - | chr1.3:4200362-4200381 | MS.gene67145:intron | 25.0% |
| !!! | TCTCCAATAATTTTCAAGAA+GGG | + | chr1.3:4199165-4199184 | None:intergenic | 25.0% |
| !!! | TTAGAAGGTGTTTATACATT+TGG | - | chr1.3:4201612-4201631 | MS.gene67145:CDS | 25.0% |
| AAAGATCTTAAACGCAGTTT+GGG | - | chr1.3:4201983-4202002 | MS.gene67145:CDS | 30.0% | |
| ATATTAACAGGGCATAGTTT+GGG | - | chr1.3:4201522-4201541 | MS.gene67145:intron | 30.0% | |
| ATGTATTGAAATCCAGATTC+TGG | - | chr1.3:4201914-4201933 | MS.gene67145:CDS | 30.0% | |
| ATGTCACATGTATAGAGATA+TGG | + | chr1.3:4200741-4200760 | None:intergenic | 30.0% | |
| ATGTTCTCAAAAGTCAACTT+AGG | + | chr1.3:4199898-4199917 | None:intergenic | 30.0% | |
| CAAGAAAATTTCGACAAAGA+TGG | - | chr1.3:4199091-4199110 | MS.gene67145:CDS | 30.0% | |
| CATAAGGATGTAAAGTACAA+AGG | - | chr1.3:4199492-4199511 | MS.gene67145:CDS | 30.0% | |
| CATCAATGTAAATGTTAGGT+GGG | + | chr1.3:4200131-4200150 | None:intergenic | 30.0% | |
| CTAAGTTTGATGAAAACAAG+AGG | + | chr1.3:4199032-4199051 | None:intergenic | 30.0% | |
| CTCTTCTTCAACTTTCTTAA+AGG | - | chr1.3:4199237-4199256 | MS.gene67145:intron | 30.0% | |
| GAAAATAATGCAATGCTACT+AGG | - | chr1.3:4200052-4200071 | MS.gene67145:intron | 30.0% | |
| GAAAATTATTGGAGACATGT+TGG | - | chr1.3:4199170-4199189 | MS.gene67145:CDS | 30.0% | |
| GATATACGAACGTAGAAATT+TGG | - | chr1.3:4199801-4199820 | MS.gene67145:CDS | 30.0% | |
| GATCCCTTCTTGAAAATTAT+TGG | - | chr1.3:4199159-4199178 | MS.gene67145:CDS | 30.0% | |
| GCAATGCAGTTAGAAATAAT+TGG | - | chr1.3:4199568-4199587 | MS.gene67145:CDS | 30.0% | |
| TACCTATAACAAATGGTAGA+AGG | + | chr1.3:4202025-4202044 | None:intergenic | 30.0% | |
| TTAACTACCATCAACTTGAA+AGG | + | chr1.3:4200372-4200391 | None:intergenic | 30.0% | |
| TTGTTAGCATAACCCAATTA+AGG | + | chr1.3:4200861-4200880 | None:intergenic | 30.0% | |
| TTTATAACAGCATTGTTTCG+TGG | - | chr1.3:4200083-4200102 | MS.gene67145:intron | 30.0% | |
| TTTGCTTTACTTGTCTAGAA+AGG | - | chr1.3:4201868-4201887 | MS.gene67145:intron | 30.0% | |
| ! | AGAACTATTTCTCTTTGTTC+TGG | - | chr1.3:4201952-4201971 | MS.gene67145:CDS | 30.0% |
| ! | GAACTATTTCTCTTTGTTCT+GGG | - | chr1.3:4201953-4201972 | MS.gene67145:CDS | 30.0% |
| ! | GTATAAACAGAATTGGTTCA+TGG | - | chr1.3:4202049-4202068 | MS.gene67145:CDS | 30.0% |
| ! | GTCATTCTCAACATCAATTT+TGG | + | chr1.3:4200299-4200318 | None:intergenic | 30.0% |
| ! | TGTTTGCAGATGGAATTTTT+GGG | - | chr1.3:4199720-4199739 | MS.gene67145:CDS | 30.0% |
| ! | TTGTTTGCAGATGGAATTTT+TGG | - | chr1.3:4199719-4199738 | MS.gene67145:CDS | 30.0% |
| !! | AATTTTCAAGAAGGGATCTA+TGG | + | chr1.3:4199157-4199176 | None:intergenic | 30.0% |
| !! | ATCTCCATGTATTTGTTGTT+CGG | + | chr1.3:4198962-4198981 | None:intergenic | 30.0% |
| !! | ATGGAGATTATCTATTTCTG+AGG | - | chr1.3:4198974-4198993 | MS.gene67145:CDS | 30.0% |
| !! | CTTTTGTAGACTCCATTTTT+TGG | + | chr1.3:4201218-4201237 | None:intergenic | 30.0% |
| !! | GTCTCCAATAATTTTCAAGA+AGG | + | chr1.3:4199166-4199185 | None:intergenic | 30.0% |
| !! | TTCCTTCTACCATTTGTTAT+AGG | - | chr1.3:4202020-4202039 | MS.gene67145:CDS | 30.0% |
| !!! | AATTTAAATTTTGGTGGTGC+AGG | - | chr1.3:4199378-4199397 | MS.gene67145:CDS | 30.0% |
| AAAGAATGTCCTTAGGGTAT+TGG | + | chr1.3:4200990-4201009 | None:intergenic | 35.0% | |
| AACGTAAGCACATGTATTTG+GGG | - | chr1.3:4199934-4199953 | MS.gene67145:intron | 35.0% | |
| AAGAGGGATTTGTCATCATA+AGG | + | chr1.3:4201750-4201769 | None:intergenic | 35.0% | |
| AAGCTGTTGAAAAACAGACA+AGG | + | chr1.3:4201789-4201808 | None:intergenic | 35.0% | |
| AATGCAACCACAATCAAGTT+TGG | + | chr1.3:4201270-4201289 | None:intergenic | 35.0% | |
| ACAACGTAAGCACATGTATT+TGG | - | chr1.3:4199932-4199951 | MS.gene67145:intron | 35.0% | |
| AGAGGGATTTGTCATCATAA+GGG | + | chr1.3:4201749-4201768 | None:intergenic | 35.0% | |
| AGTCAAATATGTGTAGGACT+AGG | + | chr1.3:4200700-4200719 | None:intergenic | 35.0% | |
| CAAAGATCTTAAACGCAGTT+TGG | - | chr1.3:4201982-4202001 | MS.gene67145:CDS | 35.0% | |
| CAAAGGGTTACTATCTATCA+TGG | - | chr1.3:4199509-4199528 | MS.gene67145:CDS | 35.0% | |
| CAACGTAAGCACATGTATTT+GGG | - | chr1.3:4199933-4199952 | MS.gene67145:intron | 35.0% | |
| CATATTAACAGGGCATAGTT+TGG | - | chr1.3:4201521-4201540 | MS.gene67145:intron | 35.0% | |
| CCACCTAACATTTACATTGA+TGG | - | chr1.3:4200129-4200148 | MS.gene67145:intron | 35.0% | |
| CCATCAATGTAAATGTTAGG+TGG | + | chr1.3:4200132-4200151 | None:intergenic | 35.0% | |
| CCATGCAGATTACCAAAAAA+TGG | - | chr1.3:4201203-4201222 | MS.gene67145:intron | 35.0% | |
| CCTTCTAACTGATCTAACAA+CGG | + | chr1.3:4201600-4201619 | None:intergenic | 35.0% | |
| CTAAATCAACTCTTGTGTCA+AGG | + | chr1.3:4199458-4199477 | None:intergenic | 35.0% | |
| TATTGAAATCCAGATTCTGG+AGG | - | chr1.3:4201917-4201936 | MS.gene67145:CDS | 35.0% | |
| TTGATTGTGGTTGCATTTAG+AGG | - | chr1.3:4201273-4201292 | MS.gene67145:intron | 35.0% | |
| ! | ACTGAAGTGCTTAAAGAAGA+GGG | + | chr1.3:4201766-4201785 | None:intergenic | 35.0% |
| ! | CAAACTGCGTTTAAGATCTT+TGG | + | chr1.3:4201984-4202003 | None:intergenic | 35.0% |
| ! | CTTGTTGGATTGATAATTCC+AGG | - | chr1.3:4202083-4202102 | MS.gene67145:CDS | 35.0% |
| ! | GTTTGCAGATGGAATTTTTG+GGG | - | chr1.3:4199721-4199740 | MS.gene67145:CDS | 35.0% |
| ! | TTTTCAACAGCTTGTACCAA+GGG | - | chr1.3:4201796-4201815 | MS.gene67145:intron | 35.0% |
| !! | TTTTTCAACAGCTTGTACCA+AGG | - | chr1.3:4201795-4201814 | MS.gene67145:intron | 35.0% |
| !!! | CCATTTTTTGGTAATCTGCA+TGG | + | chr1.3:4201206-4201225 | None:intergenic | 35.0% |
| AAACAGACGTTGATATCTCC+TGG | - | chr1.3:4201325-4201344 | MS.gene67145:intron | 40.0% | |
| ACTCCAATGATATGGTTCCT+AGG | - | chr1.3:4201721-4201740 | MS.gene67145:CDS | 40.0% | |
| AGGTGGGAAACCAATTGTTA+GGG | + | chr1.3:4200115-4200134 | None:intergenic | 40.0% | |
| CCGTTGTTAGATCAGTTAGA+AGG | - | chr1.3:4201597-4201616 | MS.gene67145:CDS | 40.0% | |
| CCTAGAGCTTCTAATTTCCA+AGG | - | chr1.3:4202169-4202188 | MS.gene67145:CDS | 40.0% | |
| CCTTGGAAATTAGAAGCTCT+AGG | + | chr1.3:4202172-4202191 | None:intergenic | 40.0% | |
| CGTAGTAAGCATATTGATGC+TGG | + | chr1.3:4201449-4201468 | None:intergenic | 40.0% | |
| GATCCTAGGAACCATATCAT+TGG | + | chr1.3:4201727-4201746 | None:intergenic | 40.0% | |
| GCAACTGAGAGAAATGTTGA+AGG | - | chr1.3:4201479-4201498 | MS.gene67145:intron | 40.0% | |
| GGTTCCGAACAACAAATACA+TGG | - | chr1.3:4198955-4198974 | MS.gene67145:CDS | 40.0% | |
| GTTTGTCTAAGAATCCCAGT+CGG | + | chr1.3:4202148-4202167 | None:intergenic | 40.0% | |
| TAATCTGCAGTGAAATGAGC+TGG | + | chr1.3:4202113-4202132 | None:intergenic | 40.0% | |
| TAGGTGGGAAACCAATTGTT+AGG | + | chr1.3:4200116-4200135 | None:intergenic | 40.0% | |
| TCCTCTTTACCAATACCCTA+AGG | - | chr1.3:4200978-4200997 | MS.gene67145:intron | 40.0% | |
| TTGTCATCATAAGGGATCCT+AGG | + | chr1.3:4201741-4201760 | None:intergenic | 40.0% | |
| TTTGTCTAAGAATCCCAGTC+GGG | + | chr1.3:4202147-4202166 | None:intergenic | 40.0% | |
| ! | AAAGCAAGTGTTGTGGAACT+AGG | - | chr1.3:4199003-4199022 | MS.gene67145:CDS | 40.0% |
| ! | AATCAAGTTTGGCTCAGACT+TGG | + | chr1.3:4201259-4201278 | None:intergenic | 40.0% |
| ! | ATTGGTTCATGGCATTGTTC+AGG | - | chr1.3:4202060-4202079 | MS.gene67145:CDS | 40.0% |
| ! | GACTGAAGTGCTTAAAGAAG+AGG | + | chr1.3:4201767-4201786 | None:intergenic | 40.0% |
| !! | GCTTTGGGACTATTAGAGAA+CGG | - | chr1.3:4201393-4201412 | MS.gene67145:CDS | 40.0% |
| !! | TCCTTAGGGTATTGGTAAAG+AGG | + | chr1.3:4200982-4201001 | None:intergenic | 40.0% |
| !!! | TCCACAACACTTGCTTTTTG+TGG | + | chr1.3:4199000-4199019 | None:intergenic | 40.0% |
| !!! | TTTTGGGGCTATACAGCTTT+TGG | - | chr1.3:4199736-4199755 | MS.gene67145:CDS | 40.0% |
| AACTTCTCGTCTCCAACTCT+TGG | + | chr1.3:4201642-4201661 | None:intergenic | 45.0% | |
| ACATTTGGGCAACCAAGAGT+TGG | - | chr1.3:4201627-4201646 | MS.gene67145:CDS | 45.0% | |
| AGAGTTGGAGACGAGAAGTT+TGG | - | chr1.3:4201642-4201661 | MS.gene67145:CDS | 45.0% | |
| ATGGCATTGTTCAGGCTTGT+TGG | - | chr1.3:4202068-4202087 | MS.gene67145:CDS | 45.0% | |
| GACTATTAGAGAACGGTGGA+TGG | - | chr1.3:4201400-4201419 | MS.gene67145:CDS | 45.0% | |
| GATAACACCGGAAAAGTCGT+CGG | - | chr1.3:4199407-4199426 | MS.gene67145:CDS | 45.0% | |
| GATCTTAAACGCAGTTTGGG+AGG | - | chr1.3:4201986-4202005 | MS.gene67145:CDS | 45.0% | |
| GTAGATTTCATACCTGCCCT+TGG | + | chr1.3:4201815-4201834 | None:intergenic | 45.0% | |
| GTCTGAGCCAAACTTGATTG+TGG | - | chr1.3:4201260-4201279 | MS.gene67145:intron | 45.0% | |
| GTGGAATCTGCCCTAACAAT+TGG | - | chr1.3:4200102-4200121 | MS.gene67145:intron | 45.0% | |
| TATGTCAATGCTACCCGACT+GGG | - | chr1.3:4202131-4202150 | MS.gene67145:CDS | 45.0% | |
| TGGTATGACCTACCAAACGT+GGG | - | chr1.3:4201345-4201364 | MS.gene67145:intron | 45.0% | |
| TTAACAGGGCATAGTTTGGG+TGG | - | chr1.3:4201525-4201544 | MS.gene67145:intron | 45.0% | |
| TTATGTCAATGCTACCCGAC+TGG | - | chr1.3:4202130-4202149 | MS.gene67145:CDS | 45.0% | |
| TTCCATTGCACAGCGTCAAA+TGG | + | chr1.3:4201306-4201325 | None:intergenic | 45.0% | |
| TTCTTGCCTCAAGTCCTTGT+GGG | + | chr1.3:4199077-4199096 | None:intergenic | 45.0% | |
| TTGGAGACATGTTGGAGTCT+TGG | - | chr1.3:4199178-4199197 | MS.gene67145:CDS | 45.0% | |
| TTGGGACTATTAGAGAACGG+TGG | - | chr1.3:4201396-4201415 | MS.gene67145:CDS | 45.0% | |
| TTTCTTGCCTCAAGTCCTTG+TGG | + | chr1.3:4199078-4199097 | None:intergenic | 45.0% | |
| ! | AGCTTCATTGATTGCCCACA+AGG | - | chr1.3:4199060-4199079 | MS.gene67145:CDS | 45.0% |
| ! | GCCACAAAAAGCAAGTGTTG+TGG | - | chr1.3:4198996-4199015 | MS.gene67145:CDS | 45.0% |
| ! | GGTGGGTTCATGAAAGCTTT+GGG | - | chr1.3:4201378-4201397 | MS.gene67145:intron | 45.0% |
| ! | TCAAGTAATGGAGGGCTCAT+TGG | - | chr1.3:4199213-4199232 | MS.gene67145:intron | 45.0% |
| ! | TGAAATCCAGATTCTGGAGG+AGG | - | chr1.3:4201920-4201939 | MS.gene67145:CDS | 45.0% |
| !! | GGGCTATACAGCTTTTGGAA+CGG | - | chr1.3:4199741-4199760 | MS.gene67145:CDS | 45.0% |
| !! | TGGTGGGTTCATGAAAGCTT+TGG | - | chr1.3:4201377-4201396 | MS.gene67145:intron | 45.0% |
| !!! | AAATTTTGGTGGTGCAGGAG+AGG | - | chr1.3:4199383-4199402 | MS.gene67145:CDS | 45.0% |
| !! | AAAAAAATTAAACTTATTAT+AGG | + | chr1.3:4199860-4199879 | None:intergenic | 5.0% |
| AACGTGGGTAAGATGCATGG+TGG | - | chr1.3:4201360-4201379 | MS.gene67145:intron | 50.0% | |
| ACGTGGGTAAGATGCATGGT+GGG | - | chr1.3:4201361-4201380 | MS.gene67145:intron | 50.0% | |
| CACGTTTGGTAGGTCATACC+AGG | + | chr1.3:4201346-4201365 | None:intergenic | 50.0% | |
| CCAAACGTGGGTAAGATGCA+TGG | - | chr1.3:4201357-4201376 | MS.gene67145:intron | 50.0% | |
| CCATGCATCTTACCCACGTT+TGG | + | chr1.3:4201360-4201379 | None:intergenic | 50.0% | |
| CTCCATTTGACGCTGTGCAA+TGG | - | chr1.3:4201301-4201320 | MS.gene67145:intron | 50.0% | |
| CTGGTATGACCTACCAAACG+TGG | - | chr1.3:4201344-4201363 | MS.gene67145:intron | 50.0% | |
| GCAGTTTGGGAGGTGATTAG+AGG | - | chr1.3:4201996-4202015 | MS.gene67145:CDS | 50.0% | |
| GCATAGTTTGGGTGGAGCAT+TGG | - | chr1.3:4201533-4201552 | MS.gene67145:intron | 50.0% | |
| GCATCTTACCCACGTTTGGT+AGG | + | chr1.3:4201356-4201375 | None:intergenic | 50.0% | |
| GTGAAATGAGCTGGTAGTCC+TGG | + | chr1.3:4202104-4202123 | None:intergenic | 50.0% | |
| TGATTGCCCACAAGGACTTG+AGG | - | chr1.3:4199068-4199087 | MS.gene67145:CDS | 50.0% | |
| TGCAGGAGAGGTGATAACAC+CGG | - | chr1.3:4199395-4199414 | MS.gene67145:CDS | 50.0% | |
| AACACCGGAAAAGTCGTCGG+CGG | - | chr1.3:4199410-4199429 | MS.gene67145:CDS | 55.0% | |
| CAACAGCTTGTACCAAGGGC+AGG | - | chr1.3:4201800-4201819 | MS.gene67145:intron | 55.0% | |
| GCGGAGTTCTTATCGGTGGT+TGG | - | chr1.3:4199429-4199448 | MS.gene67145:CDS | 55.0% | |
| GTCGTCGGCGGAGTTCTTAT+CGG | - | chr1.3:4199422-4199441 | MS.gene67145:CDS | 55.0% | |
| TTGGCTCCTCCTCCAGAATC+TGG | + | chr1.3:4201929-4201948 | None:intergenic | 55.0% | |
| ! | AACTCCGCCGACGACTTTTC+CGG | + | chr1.3:4199417-4199436 | None:intergenic | 55.0% |
| GTCGGCGGAGTTCTTATCGG+TGG | - | chr1.3:4199425-4199444 | MS.gene67145:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 4198952 | 4202199 | 4198952 | ID=MS.gene67145 |
| chr1.3 | mRNA | 4198952 | 4202199 | 4198952 | ID=MS.gene67145.t1;Parent=MS.gene67145 |
| chr1.3 | exon | 4201893 | 4202199 | 4201893 | ID=MS.gene67145.t1.exon1;Parent=MS.gene67145.t1 |
| chr1.3 | CDS | 4201893 | 4202199 | 4201893 | ID=cds.MS.gene67145.t1;Parent=MS.gene67145.t1 |
| chr1.3 | exon | 4201558 | 4201751 | 4201558 | ID=MS.gene67145.t1.exon2;Parent=MS.gene67145.t1 |
| chr1.3 | CDS | 4201558 | 4201751 | 4201558 | ID=cds.MS.gene67145.t1;Parent=MS.gene67145.t1 |
| chr1.3 | exon | 4201389 | 4201422 | 4201389 | ID=MS.gene67145.t1.exon3;Parent=MS.gene67145.t1 |
| chr1.3 | CDS | 4201389 | 4201422 | 4201389 | ID=cds.MS.gene67145.t1;Parent=MS.gene67145.t1 |
| chr1.3 | exon | 4199330 | 4199940 | 4199330 | ID=MS.gene67145.t1.exon4;Parent=MS.gene67145.t1 |
| chr1.3 | CDS | 4199330 | 4199940 | 4199330 | ID=cds.MS.gene67145.t1;Parent=MS.gene67145.t1 |
| chr1.3 | exon | 4198952 | 4199221 | 4198952 | ID=MS.gene67145.t1.exon5;Parent=MS.gene67145.t1 |
| chr1.3 | CDS | 4198952 | 4199221 | 4198952 | ID=cds.MS.gene67145.t1;Parent=MS.gene67145.t1 |
| Gene Sequence |
| Protein sequence |
