Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49665.t1 | BAV14869.1 | 72 | 75 | 15 | 4 | 1 | 75 | 30 | 98 | 2.20E-17 | 97.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49665.t1 | G7K705 | 67.1 | 76 | 24 | 1 | 1 | 75 | 49 | 124 | 4.7e-17 | 96.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene49665 | 0.824154 | 9.41E-54 | -1.69E-46 |
| MS.gene049272 | MS.gene49665 | 0.807924 | 3.98E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene49665 | 0.823764 | 1.16E-53 | -1.69E-46 |
| MS.gene049435 | MS.gene49665 | 0.83239 | 9.72E-56 | -1.69E-46 |
| MS.gene049501 | MS.gene49665 | 0.811172 | 7.99E-51 | -1.69E-46 |
| MS.gene049647 | MS.gene49665 | 0.801004 | 1.10E-48 | -1.69E-46 |
| MS.gene050020 | MS.gene49665 | 0.803665 | 3.13E-49 | -1.69E-46 |
| MS.gene05016 | MS.gene49665 | 0.811816 | 5.79E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene49665 | 0.835909 | 1.28E-56 | -1.69E-46 |
| MS.gene050629 | MS.gene49665 | -0.823004 | 1.75E-53 | -1.69E-46 |
| MS.gene050680 | MS.gene49665 | 0.82099 | 5.12E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene49665 | 0.800135 | 1.66E-48 | -1.69E-46 |
| MS.gene050724 | MS.gene49665 | 0.802926 | 4.45E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene49665 | 0.821821 | 3.29E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene49665 | 0.838662 | 2.52E-57 | -1.69E-46 |
| MS.gene050815 | MS.gene49665 | 0.816915 | 4.32E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene49665 | 0.824515 | 7.74E-54 | -1.69E-46 |
| MS.gene050844 | MS.gene49665 | 0.826002 | 3.44E-54 | -1.69E-46 |
| MS.gene050959 | MS.gene49665 | 0.818976 | 1.48E-52 | -1.69E-46 |
| MS.gene051180 | MS.gene49665 | 0.835438 | 1.68E-56 | -1.69E-46 |
| MS.gene051210 | MS.gene49665 | 0.80706 | 6.08E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene49665 | 0.800738 | 1.25E-48 | -1.69E-46 |
| MS.gene051265 | MS.gene49665 | 0.843197 | 1.62E-58 | -1.69E-46 |
| MS.gene051344 | MS.gene49665 | 0.823932 | 1.06E-53 | -1.69E-46 |
| MS.gene051719 | MS.gene49665 | 0.81275 | 3.62E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene49665 | 0.805912 | 1.06E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene49665 | 0.800407 | 1.46E-48 | -1.69E-46 |
| MS.gene052020 | MS.gene49665 | 0.830629 | 2.64E-55 | -1.69E-46 |
| MS.gene052190 | MS.gene49665 | 0.831048 | 2.08E-55 | -1.69E-46 |
| MS.gene052323 | MS.gene49665 | 0.825101 | 5.63E-54 | -1.69E-46 |
| MS.gene052384 | MS.gene49665 | 0.806606 | 7.58E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene49665 | 0.802148 | 6.44E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene49665 | 0.805174 | 1.52E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene49665 | 0.826173 | 3.14E-54 | -1.69E-46 |
| MS.gene052613 | MS.gene49665 | 0.80889 | 2.48E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene49665 | 0.824283 | 8.78E-54 | -1.69E-46 |
| MS.gene052773 | MS.gene49665 | 0.818616 | 1.79E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene49665 | 0.843071 | 1.76E-58 | -1.69E-46 |
| MS.gene052896 | MS.gene49665 | 0.838057 | 3.60E-57 | -1.69E-46 |
| MS.gene053008 | MS.gene49665 | 0.826189 | 3.11E-54 | -1.69E-46 |
| MS.gene053054 | MS.gene49665 | -0.808414 | 3.13E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene49665 | 0.828596 | 8.23E-55 | -1.69E-46 |
| MS.gene053184 | MS.gene49665 | 0.806828 | 6.80E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene49665 | 0.81313 | 2.99E-51 | -1.69E-46 |
| MS.gene053331 | MS.gene49665 | 0.823248 | 1.53E-53 | -1.69E-46 |
| MS.gene053565 | MS.gene49665 | 0.803421 | 3.52E-49 | -1.69E-46 |
| MS.gene053966 | MS.gene49665 | 0.801879 | 7.31E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene49665 | 0.801393 | 9.20E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene49665 | -0.804975 | 1.67E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene49665 | 0.805793 | 1.12E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene49665 | 0.84812 | 7.51E-60 | -1.69E-46 |
| MS.gene054468 | MS.gene49665 | 0.85314 | 2.91E-61 | -1.69E-46 |
| MS.gene054472 | MS.gene49665 | 0.850946 | 1.22E-60 | -1.69E-46 |
| MS.gene054559 | MS.gene49665 | 0.811149 | 8.09E-51 | -1.69E-46 |
| MS.gene05462 | MS.gene49665 | 0.801844 | 7.43E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene49665 | 0.802706 | 4.94E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene49665 | 0.811835 | 5.74E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene49665 | 0.809509 | 1.83E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene49665 | 0.80913 | 2.20E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene49665 | 0.855769 | 5.05E-62 | -1.69E-46 |
| MS.gene055357 | MS.gene49665 | 0.836528 | 8.87E-57 | -1.69E-46 |
| MS.gene055358 | MS.gene49665 | 0.855866 | 4.73E-62 | -1.69E-46 |
| MS.gene055363 | MS.gene49665 | 0.810131 | 1.34E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene49665 | 0.808933 | 2.43E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene49665 | 0.815581 | 8.59E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene49665 | 0.803731 | 3.03E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene49665 | 0.81065 | 1.04E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene49665 | 0.823119 | 1.64E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene49665 | 0.849241 | 3.67E-60 | -1.69E-46 |
| MS.gene055926 | MS.gene49665 | 0.834839 | 2.38E-56 | -1.69E-46 |
| MS.gene05604 | MS.gene49665 | 0.829049 | 6.40E-55 | -1.69E-46 |
| MS.gene056173 | MS.gene49665 | 0.809277 | 2.05E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene49665 | 0.809355 | 1.97E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene49665 | 0.803834 | 2.89E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene49665 | 0.808934 | 2.43E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene49665 | 0.809793 | 1.59E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene49665 | 0.805732 | 1.16E-49 | -1.69E-46 |
| MS.gene057194 | MS.gene49665 | 0.801908 | 7.21E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene49665 | 0.803832 | 2.89E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene49665 | 0.80723 | 5.59E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene49665 | 0.809322 | 2.00E-50 | -1.69E-46 |
| MS.gene058168 | MS.gene49665 | 0.801228 | 9.94E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene49665 | 0.831672 | 1.46E-55 | -1.69E-46 |
| MS.gene058636 | MS.gene49665 | 0.804564 | 2.03E-49 | -1.69E-46 |
| MS.gene058829 | MS.gene49665 | 0.808866 | 2.51E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene49665 | 0.825503 | 4.53E-54 | -1.69E-46 |
| MS.gene059272 | MS.gene49665 | 0.801084 | 1.06E-48 | -1.69E-46 |
| MS.gene059713 | MS.gene49665 | 0.822283 | 2.57E-53 | -1.69E-46 |
| MS.gene059725 | MS.gene49665 | 0.805019 | 1.63E-49 | -1.69E-46 |
| MS.gene059789 | MS.gene49665 | 0.828716 | 7.70E-55 | -1.69E-46 |
| MS.gene059842 | MS.gene49665 | 0.815325 | 9.79E-52 | -1.69E-46 |
| MS.gene059937 | MS.gene49665 | 0.806739 | 7.11E-50 | -1.69E-46 |
| MS.gene060137 | MS.gene49665 | -0.82259 | 2.18E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene49665 | 0.855743 | 5.14E-62 | -1.69E-46 |
| MS.gene060637 | MS.gene49665 | 0.81043 | 1.16E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene49665 | 0.833461 | 5.26E-56 | -1.69E-46 |
| MS.gene060685 | MS.gene49665 | 0.838268 | 3.18E-57 | -1.69E-46 |
| MS.gene060802 | MS.gene49665 | 0.820278 | 7.46E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene49665 | 0.839185 | 1.84E-57 | -1.69E-46 |
| MS.gene060918 | MS.gene49665 | 0.812914 | 3.34E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene49665 | 0.830694 | 2.54E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 20 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGAGAGCTGGAAATTC+TGG | 0.279686 | 5.1:+27825920 | MS.gene49665:intron |
| TAAACAAACCTGTTGTGAAT+AGG | 0.400300 | 5.1:-27824263 | None:intergenic |
| TTAGTTAGTGGTGGAGGAAC+AGG | 0.433994 | 5.1:+27824092 | MS.gene49665:CDS |
| TTTAGTAGCTTAGTTAGTGG+TGG | 0.443725 | 5.1:+27824083 | None:intergenic |
| TGTCAACCATGATGCACAAT+TGG | 0.454537 | 5.1:+27824196 | MS.gene49665:CDS |
| GACCAGATCCTATTCACAAC+AGG | 0.455835 | 5.1:+27824255 | MS.gene49665:CDS |
| CATGATGAACAAGTTGTTGT+TGG | 0.456308 | 5.1:+27824155 | MS.gene49665:CDS |
| TGAATAGGATCTGGTCCATT+GGG | 0.478116 | 5.1:-27824248 | None:intergenic |
| GGAAATTCTGGTAGACCTCC+TGG | 0.500969 | 5.1:+27825932 | MS.gene49665:CDS |
| AGTAGCTTAGTTAGTGGTGG+AGG | 0.503163 | 5.1:+27824086 | None:intergenic |
| AACCTGTTGTGAATAGGATC+TGG | 0.513984 | 5.1:-27824257 | None:intergenic |
| GTGAATAGGATCTGGTCCAT+TGG | 0.561168 | 5.1:-27824249 | None:intergenic |
| TGAAGTCCAATTGTGCATCA+TGG | 0.582511 | 5.1:-27824202 | None:intergenic |
| TCAGTTGACTAAGTTTGACC+AGG | 0.583639 | 5.1:-27825950 | None:intergenic |
| AGTTGTTGTTGGTAAAGACA+AGG | 0.593670 | 5.1:+27824166 | MS.gene49665:CDS |
| GACAAACAACTACAAGACAT+TGG | 0.623172 | 5.1:+27824114 | MS.gene49665:CDS |
| AACTACAAGACATTGGTCAG+AGG | 0.649811 | 5.1:+27824121 | MS.gene49665:CDS |
| GTTGTTGTTGGTAAAGACAA+GGG | 0.652393 | 5.1:+27824167 | MS.gene49665:CDS |
| AGTAAAAGAAGAGTTCCCAA+TGG | 0.653384 | 5.1:+27824233 | MS.gene49665:CDS |
| GTTGACTAAGTTTGACCAGG+AGG | 0.677258 | 5.1:-27825947 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATACAATATTTAGAAAAT+AGG | + | chr5.1:27824501-27824520 | MS.gene49665:intron | 10.0% |
| !! | TTTGAAGATATTTAATATAT+AGG | - | chr5.1:27825631-27825650 | None:intergenic | 10.0% |
| !!! | TTTGGATTTTTTTTTTTTTT+TGG | + | chr5.1:27825008-27825027 | MS.gene49665:intron | 10.0% |
| !! | AAAAAAAGAGATAAAAACTA+AGG | + | chr5.1:27824879-27824898 | MS.gene49665:intron | 15.0% |
| !! | AAAAAAGAGATAAAAACTAA+GGG | + | chr5.1:27824880-27824899 | MS.gene49665:intron | 15.0% |
| !! | ATTATAGATGAATAATATGT+TGG | - | chr5.1:27825840-27825859 | None:intergenic | 15.0% |
| !! | TATCTGTTAATCTATTATAA+AGG | - | chr5.1:27825265-27825284 | None:intergenic | 15.0% |
| !! | TGACAAATTTATTTAATGTA+AGG | - | chr5.1:27825537-27825556 | None:intergenic | 15.0% |
| !!! | GAATTTTGAAATAGATATTT+AGG | - | chr5.1:27825505-27825524 | None:intergenic | 15.0% |
| !!! | TCTTTTTTTTTTTTTTTGAG+TGG | - | chr5.1:27824868-27824887 | None:intergenic | 15.0% |
| !! | AAGAAAGACAAAAAAAAAGA+AGG | - | chr5.1:27825406-27825425 | None:intergenic | 20.0% |
| !! | AATCTAATTCGATTAGATTA+GGG | + | chr5.1:27824727-27824746 | MS.gene49665:intron | 20.0% |
| !! | ATTAAATATCTTCAAATGCT+TGG | + | chr5.1:27825635-27825654 | MS.gene49665:intron | 20.0% |
| !! | CACAAATTATTAACAAATTC+AGG | + | chr5.1:27825575-27825594 | MS.gene49665:intron | 20.0% |
| !! | GATATATAAGTGAAAAGAAA+AGG | + | chr5.1:27824902-27824921 | MS.gene49665:intron | 20.0% |
| !! | TATTTAGAAAATAGGATATG+AGG | + | chr5.1:27824509-27824528 | MS.gene49665:intron | 20.0% |
| !! | TGAAATAGATATTTAGGAAA+TGG | - | chr5.1:27825499-27825518 | None:intergenic | 20.0% |
| !! | TTAAATATCTTCAAATGCTT+GGG | + | chr5.1:27825636-27825655 | MS.gene49665:intron | 20.0% |
| !!! | AACTTTTGATATTATGCTAA+GGG | + | chr5.1:27824831-27824850 | MS.gene49665:intron | 20.0% |
| !!! | ACGTATTAAACATTAGTTTT+TGG | + | chr5.1:27824990-27825009 | MS.gene49665:intron | 20.0% |
| !!! | TAACTTTTGATATTATGCTA+AGG | + | chr5.1:27824830-27824849 | MS.gene49665:intron | 20.0% |
| !!! | TCATTTGGTAACATTTTTTT+TGG | + | chr5.1:27825888-27825907 | MS.gene49665:intron | 20.0% |
| !!! | TTTTTTGGTAACATTTTTTC+AGG | + | chr5.1:27825903-27825922 | MS.gene49665:intron | 20.0% |
| ! | AAATCTTTATCCTGCTATAT+TGG | + | chr5.1:27825138-27825157 | MS.gene49665:intron | 25.0% |
| ! | AAGAAGATCGAATCTAATTA+AGG | - | chr5.1:27825056-27825075 | None:intergenic | 25.0% |
| ! | ACTAATGTTTAATACGTGTT+AGG | - | chr5.1:27824987-27825006 | None:intergenic | 25.0% |
| ! | CAATCTAATTCGATTAGATT+AGG | + | chr5.1:27824726-27824745 | MS.gene49665:intron | 25.0% |
| ! | GCTTATGAGTAATTAAGAAA+TGG | - | chr5.1:27825334-27825353 | None:intergenic | 25.0% |
| ! | TAAATATCTTCAAATGCTTG+GGG | + | chr5.1:27825637-27825656 | MS.gene49665:intron | 25.0% |
| ! | TACCAAATGATCTCTTAAAA+GGG | - | chr5.1:27825878-27825897 | None:intergenic | 25.0% |
| ! | TTACCAAATGATCTCTTAAA+AGG | - | chr5.1:27825879-27825898 | None:intergenic | 25.0% |
| ! | TTGGTTCAATCAGTTTAAAT+CGG | + | chr5.1:27824689-27824708 | MS.gene49665:intron | 25.0% |
| !! | AGCTCACAAAATTTTAAATG+CGG | + | chr5.1:27825724-27825743 | MS.gene49665:intron | 25.0% |
| !! | GTTTAAATCGGTTCAATTAA+AGG | + | chr5.1:27824701-27824720 | MS.gene49665:intron | 25.0% |
| !! | TTAACCTCTTTTAACATTGA+TGG | + | chr5.1:27825238-27825257 | MS.gene49665:intron | 25.0% |
| !!! | AGATTTTAAAGTCAGAGTTA+AGG | - | chr5.1:27825124-27825143 | None:intergenic | 25.0% |
| !!! | CTTCAATTGTTTTTAGTTCA+TGG | + | chr5.1:27825604-27825623 | MS.gene49665:intron | 25.0% |
| !!! | TAGTTAGCTTTCTTTCTTTT+TGG | - | chr5.1:27825172-27825191 | None:intergenic | 25.0% |
| !!! | TTCAATTTTTGCCACTTATT+AGG | + | chr5.1:27824338-27824357 | MS.gene49665:intron | 25.0% |
| ACTGATTGAACCAATTCAAT+CGG | - | chr5.1:27824683-27824702 | None:intergenic | 30.0% | |
| AGCAATGTATACCTAATAAG+TGG | - | chr5.1:27824352-27824371 | None:intergenic | 30.0% | |
| CTATATTCTAGGTGCAATAT+AGG | + | chr5.1:27824459-27824478 | MS.gene49665:intron | 30.0% | |
| GGTATGTGATAAGAATAGAA+AGG | - | chr5.1:27825035-27825054 | None:intergenic | 30.0% | |
| GTTAAAAAATCAAACCGAAG+AGG | - | chr5.1:27824814-27824833 | None:intergenic | 30.0% | |
| TAAACAAACCTGTTGTGAAT+AGG | - | chr5.1:27824266-27824285 | None:intergenic | 30.0% | |
| TATGTGACACTCTATATTCT+AGG | + | chr5.1:27824448-27824467 | MS.gene49665:intron | 30.0% | |
| TGTTAGGAAAGGAACATAAT+TGG | - | chr5.1:27824971-27824990 | None:intergenic | 30.0% | |
| TGTTTAATACGTGTTAGGAA+AGG | - | chr5.1:27824982-27825001 | None:intergenic | 30.0% | |
| TTCAGAGAGAAAAAATGACA+TGG | - | chr5.1:27825369-27825388 | None:intergenic | 30.0% | |
| ! | AAATTTTAAATGCGGAGAAG+TGG | + | chr5.1:27825732-27825751 | MS.gene49665:intron | 30.0% |
| ! | AATTTTAAATGCGGAGAAGT+GGG | + | chr5.1:27825733-27825752 | MS.gene49665:intron | 30.0% |
| !! | TTCCCTTTTAAGAGATCATT+TGG | + | chr5.1:27825873-27825892 | MS.gene49665:intron | 30.0% |
| ACATTGCATAATATATGCGG+GGG | - | chr5.1:27825781-27825800 | None:intergenic | 35.0% | |
| AGGACCATCAATGTTAAAAG+AGG | - | chr5.1:27825245-27825264 | None:intergenic | 35.0% | |
| AGTAAAAGAAGAGTTCCCAA+TGG | + | chr5.1:27824233-27824252 | MS.gene49665:CDS | 35.0% | |
| ATGAATAATATGTTGGTCCC+TGG | - | chr5.1:27825833-27825852 | None:intergenic | 35.0% | |
| CATGATGAACAAGTTGTTGT+TGG | + | chr5.1:27824155-27824174 | MS.gene49665:CDS | 35.0% | |
| CCAAACAACTGGTCAATTAT+TGG | + | chr5.1:27824770-27824789 | MS.gene49665:intron | 35.0% | |
| CCAATAATTGACCAGTTGTT+TGG | - | chr5.1:27824773-27824792 | None:intergenic | 35.0% | |
| CCAATTGAACCATAACTCAA+AGG | - | chr5.1:27824549-27824568 | None:intergenic | 35.0% | |
| GACAAACAACTACAAGACAT+TGG | + | chr5.1:27824114-27824133 | MS.gene49665:CDS | 35.0% | |
| GACATTGCATAATATATGCG+GGG | - | chr5.1:27825782-27825801 | None:intergenic | 35.0% | |
| GATTAGATTAGGGTTCAAAC+AGG | + | chr5.1:27824737-27824756 | MS.gene49665:intron | 35.0% | |
| GGACATTGCATAATATATGC+GGG | - | chr5.1:27825783-27825802 | None:intergenic | 35.0% | |
| GGGACATTGCATAATATATG+CGG | - | chr5.1:27825784-27825803 | None:intergenic | 35.0% | |
| TAATTGACCAGTTGTTTGGT+TGG | - | chr5.1:27824769-27824788 | None:intergenic | 35.0% | |
| ! | ACCAATTCAATCGGTTCAAT+CGG | - | chr5.1:27824674-27824693 | None:intergenic | 35.0% |
| ! | AGTTGTTGTTGGTAAAGACA+AGG | + | chr5.1:27824166-27824185 | MS.gene49665:CDS | 35.0% |
| ! | ATGGTTCAATTGGTTTATCG+TGG | + | chr5.1:27824556-27824575 | MS.gene49665:intron | 35.0% |
| ! | ATTTTAAATGCGGAGAAGTG+GGG | + | chr5.1:27825734-27825753 | MS.gene49665:intron | 35.0% |
| ! | CCTTTGAGTTATGGTTCAAT+TGG | + | chr5.1:27824546-27824565 | MS.gene49665:intron | 35.0% |
| ! | GTTGTTGTTGGTAAAGACAA+GGG | + | chr5.1:27824167-27824186 | MS.gene49665:CDS | 35.0% |
| !! | ACTAGTTGATTTGACCTCTT+CGG | + | chr5.1:27824797-27824816 | MS.gene49665:intron | 35.0% |
| !!! | TAACATTTTTTCAGGAGAGC+TGG | + | chr5.1:27825911-27825930 | MS.gene49665:intron | 35.0% |
| AACCTGTTGTGAATAGGATC+TGG | - | chr5.1:27824260-27824279 | None:intergenic | 40.0% | |
| AACTACAAGACATTGGTCAG+AGG | + | chr5.1:27824121-27824140 | MS.gene49665:CDS | 40.0% | |
| ACCGATTGAACCGATTGAAT+TGG | + | chr5.1:27824670-27824689 | MS.gene49665:intron | 40.0% | |
| GATCAAACCAACCAAACAAC+TGG | + | chr5.1:27824759-27824778 | MS.gene49665:intron | 40.0% | |
| GGTCAAGTTTCCAATATAGC+AGG | - | chr5.1:27825151-27825170 | None:intergenic | 40.0% | |
| TGAAGTCCAATTGTGCATCA+TGG | - | chr5.1:27824205-27824224 | None:intergenic | 40.0% | |
| TGAATAGGATCTGGTCCATT+GGG | - | chr5.1:27824251-27824270 | None:intergenic | 40.0% | |
| TGTCAACCATGATGCACAAT+TGG | + | chr5.1:27824196-27824215 | MS.gene49665:CDS | 40.0% | |
| TTGTCAAGTACCCTAGTAGT+TGG | + | chr5.1:27825701-27825720 | MS.gene49665:intron | 40.0% | |
| TTTGTGAGCTCCAACTACTA+GGG | - | chr5.1:27825714-27825733 | None:intergenic | 40.0% | |
| ! | CTCATCTGACCTTTGAGTTA+TGG | + | chr5.1:27824537-27824556 | MS.gene49665:intron | 40.0% |
| ! | TTTTGTGAGCTCCAACTACT+AGG | - | chr5.1:27825715-27825734 | None:intergenic | 40.0% |
| GACCAGATCCTATTCACAAC+AGG | + | chr5.1:27824255-27824274 | MS.gene49665:CDS | 45.0% | |
| GTGAATAGGATCTGGTCCAT+TGG | - | chr5.1:27824252-27824271 | None:intergenic | 45.0% | |
| TACCAATTGAGCCAGCTTCA+CGG | + | chr5.1:27825804-27825823 | MS.gene49665:intron | 45.0% | |
| TTCAGGAGAGCTGGAAATTC+TGG | + | chr5.1:27825920-27825939 | MS.gene49665:intron | 45.0% | |
| ! | TGAAGCTGGCTCAATTGGTA+GGG | - | chr5.1:27825804-27825823 | None:intergenic | 45.0% |
| ! | TTAGTTAGTGGTGGAGGAAC+AGG | + | chr5.1:27824092-27824111 | MS.gene49665:CDS | 45.0% |
| ACCAATTGAGCCAGCTTCAC+GGG | + | chr5.1:27825805-27825824 | MS.gene49665:intron | 50.0% | |
| GGAAATTCTGGTAGACCTCC+TGG | + | chr5.1:27825932-27825951 | MS.gene49665:CDS | 50.0% | |
| TGCATAATATATGCGGGGGC+CGG | - | chr5.1:27825777-27825796 | None:intergenic | 50.0% | |
| ! | GTGAAGCTGGCTCAATTGGT+AGG | - | chr5.1:27825805-27825824 | None:intergenic | 50.0% |
| CATAATATATGCGGGGGCCG+GGG | - | chr5.1:27825775-27825794 | None:intergenic | 55.0% | |
| CCAATTGAGCCAGCTTCACG+GGG | + | chr5.1:27825806-27825825 | MS.gene49665:intron | 55.0% | |
| GCATAATATATGCGGGGGCC+GGG | - | chr5.1:27825776-27825795 | None:intergenic | 55.0% | |
| ! | ATGCGGAGAAGTGGGGTGTT+CGG | + | chr5.1:27825741-27825760 | MS.gene49665:intron | 55.0% |
| ! | CCCCGTGAAGCTGGCTCAAT+TGG | - | chr5.1:27825809-27825828 | None:intergenic | 60.0% |
| ! | TGCGGAGAAGTGGGGTGTTC+GGG | + | chr5.1:27825742-27825761 | MS.gene49665:intron | 60.0% |
| AGCCAGCTTCACGGGGACCA+GGG | + | chr5.1:27825813-27825832 | MS.gene49665:intron | 65.0% | |
| GGTGTTCGGGGTTCGAACCC+CGG | + | chr5.1:27825755-27825774 | MS.gene49665:intron | 65.0% | |
| ! | GCGGAGAAGTGGGGTGTTCG+GGG | + | chr5.1:27825743-27825762 | MS.gene49665:intron | 65.0% |
| GAGCCAGCTTCACGGGGACC+AGG | + | chr5.1:27825812-27825831 | MS.gene49665:intron | 70.0% | |
| GTCCCTGGTCCCCGTGAAGC+TGG | - | chr5.1:27825818-27825837 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 27824088 | 27825964 | 27824088 | ID=MS.gene49665 |
| chr5.1 | mRNA | 27824088 | 27825964 | 27824088 | ID=MS.gene49665.t1;Parent=MS.gene49665 |
| chr5.1 | exon | 27824088 | 27824276 | 27824088 | ID=MS.gene49665.t1.exon1;Parent=MS.gene49665.t1 |
| chr5.1 | CDS | 27824088 | 27824276 | 27824088 | ID=cds.MS.gene49665.t1;Parent=MS.gene49665.t1 |
| chr5.1 | exon | 27825925 | 27825964 | 27825925 | ID=MS.gene49665.t1.exon2;Parent=MS.gene49665.t1 |
| chr5.1 | CDS | 27825925 | 27825964 | 27825925 | ID=cds.MS.gene49665.t1;Parent=MS.gene49665.t1 |
| Gene Sequence |
| Protein sequence |
